| Modifier and Type | Method and Description |
|---|---|
String |
JIPipeJsonPlugin.getDependencyId() |
String |
JIPipeMutableDependency.getDependencyId() |
StringList |
JIPipeJsonPlugin.getDependencyProvides() |
StringList |
JIPipeMutableDependency.getDependencyProvides() |
String |
JIPipeJsonPlugin.getDependencyVersion() |
String |
JIPipeMutableDependency.getDependencyVersion() |
String |
JIPipeImageJUpdateSiteDependency.getDescription() |
String |
JIPipeImageJUpdateSiteDependency.getMaintainer() |
JIPipeStandardMetadata |
JIPipeJsonPlugin.getMetadata() |
JIPipeStandardMetadata |
JIPipeMutableDependency.getMetadata() |
String |
JIPipeImageJUpdateSiteDependency.getName() |
JIPipeImageJUpdateSiteDependency.List |
JIPipeJsonPlugin.getUpdateSiteDependenciesParameter() |
String |
JIPipeImageJUpdateSiteDependency.getUrl() |
| Modifier and Type | Method and Description |
|---|---|
JIPipeAuthorMetadata.List |
JIPipeStandardMetadata.getAcknowledgements()
Gets the list of acknowledged authors
|
StringList |
JIPipeAuthorMetadata.getAffiliations() |
JIPipeAuthorMetadata.List |
JIPipeStandardMetadata.getAuthors() |
Color |
JIPipeNodeTemplate.getBorderColor() |
PluginCategoriesEnumParameter.List |
JIPipeStandardMetadata.getCategories() |
String |
JIPipeStandardMetadata.getCitation() |
String |
JIPipeAuthorMetadata.getContact() |
HTMLText |
JIPipeAuthorMetadata.getCustomText() |
String |
JIPipeNodeTemplate.getData() |
StringList |
JIPipeStandardMetadata.getDependencyCitations() |
HTMLText |
JIPipeStandardMetadata.getDescription() |
HTMLText |
JIPipeNodeTemplate.getDescription() |
Color |
JIPipeNodeTemplate.getFillColor() |
String |
JIPipeAuthorMetadata.getFirstName() |
IconRef |
JIPipeNodeTemplate.getIcon() |
String |
JIPipeAuthorMetadata.getLastName() |
String |
JIPipeStandardMetadata.getLicense() |
StringList |
JIPipeNodeTemplate.getMenuPath() |
String |
JIPipeStandardMetadata.getName() |
String |
JIPipeNodeTemplate.getName() |
String |
JIPipeAuthorMetadata.getOrcid() |
String |
JIPipeNodeTemplate.getSource() |
HTMLText |
JIPipeStandardMetadata.getSummary() |
String |
JIPipeAuthorMetadata.getTitle() |
String |
JIPipeAuthorMetadata.getWebsite() |
String |
JIPipeStandardMetadata.getWebsite() |
boolean |
JIPipeAuthorMetadata.isCorrespondingAuthor() |
boolean |
JIPipeAuthorMetadata.isFirstAuthor() |
| Modifier and Type | Method and Description |
|---|---|
JIPipeExpressionParameter |
JIPipeDataByMetadataExporter.getFileNameGenerator() |
boolean |
JIPipeDataByMetadataExporter.isForceName() |
boolean |
JIPipeDataByMetadataExporter.isMakeFilesystemCompatible() |
| Modifier and Type | Method and Description |
|---|---|
String |
JIPipeArtifact.getArtifactId() |
String |
JIPipeArtifact.getClassifier() |
String |
JIPipeArtifact.getGroupId() |
String |
JIPipeArtifactRepositoryReference.getRepository() |
JIPipeArtifactRepositoryType |
JIPipeArtifactRepositoryReference.getType() |
String |
JIPipeArtifactRepositoryReference.getUrl() |
String |
JIPipeArtifact.getVersion() |
| Modifier and Type | Class and Description |
|---|---|
class |
IOInterfaceAlgorithm
Algorithm that passes the input to the output
|
class |
JIPipeProjectCompartment
A project compartment.
|
class |
JIPipeProjectCompartmentOutput
A graph compartment output
Transfers data 1:1 from input to output
|
| Modifier and Type | Method and Description |
|---|---|
GraphNodeParameterReferenceGroupCollection |
JIPipeProjectCompartment.getExportedParameters() |
String |
JIPipeProjectCompartmentOutput.getName() |
OptionalColorParameter |
JIPipeProjectCompartmentOutput.getProjectOverviewColor() |
OptionalColorParameter |
JIPipeProjectCompartment.getProjectOverviewColor() |
boolean |
JIPipeProjectCompartmentOutput.isShowInProjectOverview() |
boolean |
JIPipeProjectCompartment.isShowInProjectOverview() |
boolean |
JIPipeProjectCompartment.isShowLimitedParameters() |
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeCompartmentOutputData
Represents an
JIPipeProjectCompartmentOutput in the compartment graph. |
| Modifier and Type | Class and Description |
|---|---|
class |
DataTableImageJDataExporter
The fallback/default data adapter that can handle any data type.
|
class |
DataTableImageJDataImporter
The fallback/default data adapter that can handle any data type.
|
class |
EmptyImageJDataExporter
An exporter that does nothing
|
class |
EmptyImageJDataImporter
An importer that does nothing
|
| Modifier and Type | Method and Description |
|---|---|
String |
ImageJDataExportOperation.getExporterId() |
String |
ImageJDataImportOperation.getImporterId() |
String |
ImageJExportParameters.getName() |
String |
ImageJImportParameters.getName() |
boolean |
ImageJExportParameters.isActivate() |
boolean |
ImageJExportParameters.isAppend() |
boolean |
ImageJExportParameters.isDuplicate() |
boolean |
ImageJImportParameters.isDuplicate() |
boolean |
ImageJExportParameters.isNoWindows() |
| Modifier and Type | Interface and Description |
|---|---|
interface |
JIPipeData
Base class for any JIPipe data wrapper class
There must be a static function importData(
JIPipeReadDataStorage, JIPipeProgressInfo) that imports the data from a row storage folder. |
class |
JIPipeDataTable |
class |
JIPipeEmptyData |
| Modifier and Type | Method and Description |
|---|---|
String |
JIPipeDataSlotInfo.getCustomName() |
String |
JIPipeDataSlotInfo.getDescription() |
boolean |
JIPipeDataSlotInfo.isOptional() |
boolean |
JIPipeDataSlotInfo.isStoreToDisk() |
boolean |
JIPipeDataSlotInfo.isVirtual() |
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeEmptyThumbnailData |
class |
JIPipeGridThumbnailData |
class |
JIPipeIconLabelThumbnailData |
class |
JIPipeImageThumbnailData |
class |
JIPipeTextThumbnailData |
interface |
JIPipeThumbnailData |
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeWeakDataReferenceData
A helper data type that weakly references other data
|
| Modifier and Type | Method and Description |
|---|---|
JIPipeExpressionParameter |
JIPipeProcessArtifactEnvironment.getArguments() |
JIPipeArtifactQueryParameter |
JIPipeArtifactEnvironment.getArtifactQuery() |
StringQueryExpressionAndStringPairParameter.List |
JIPipeProcessArtifactEnvironment.getEnvironmentVariables() |
Path |
JIPipeProcessArtifactEnvironment.getExecutablePath() |
String |
JIPipeEnvironment.getName() |
String |
JIPipeEnvironment.getSource() |
String |
JIPipeEnvironment.getVersion() |
boolean |
JIPipeArtifactEnvironment.isLoadFromArtifact() |
| Modifier and Type | Class and Description |
|---|---|
class |
GraphWrapperAlgorithmInput |
class |
GraphWrapperAlgorithmOutput |
class |
JIPipeNodeGroup
A sub-graph algorithm that can be defined by a user
|
| Modifier and Type | Method and Description |
|---|---|
HTMLText |
GraphNodeParameterReference.getCustomDescription() |
String |
GraphNodeParameterReference.getCustomName() |
HTMLText |
GraphNodeParameterReferenceGroup.getDescription() |
String |
GraphNodeParameterReferenceGroup.getName() |
String |
GraphNodeParameterReference.getPath() |
| Modifier and Type | Class and Description |
|---|---|
class |
LoopEndNode
Deprecated.
|
class |
LoopStartNode
Deprecated.
|
| Modifier and Type | Method and Description |
|---|---|
JIPipeMergingAlgorithmIterationStepGenerationSettings |
LoopStartNode.getBatchGenerationSettings()
Deprecated.
|
JIPipeGraphWrapperAlgorithm.IterationMode |
LoopStartNode.getIterationMode()
Deprecated.
|
| Modifier and Type | Method and Description |
|---|---|
HTMLText |
JIPipeGraphNode.getCustomDescription()
Returns the custom description that is set by the user
|
JIPipeCustomExpressionVariablesParameter |
JIPipeAlgorithm.getDefaultCustomExpressionVariables() |
String |
JIPipeGraphNode.getName()
Returns the algorithm name
|
StringQueryExpressionAndStringPairParameter.List |
JIPipeAdaptiveParameterSettings.getOverriddenParameters() |
String |
JIPipeAdaptiveParameterSettings.getParameterAnnotationsPrefix() |
RuntimePartitionReferenceParameter |
JIPipeAlgorithm.getRuntimePartition() |
boolean |
JIPipeAdaptiveParameterSettings.isAttachOnlyNonDefaultParameterAnnotations() |
boolean |
JIPipeAdaptiveParameterSettings.isAttachParameterAnnotations() |
boolean |
JIPipeGraphNode.isBookmarked() |
boolean |
JIPipeAdaptiveParameterSettings.isEnabled() |
boolean |
JIPipeAlgorithm.isEnabled() |
boolean |
JIPipeAdaptiveParameterSettings.isParameterAnnotationsUseInternalNames() |
boolean |
JIPipeAlgorithm.isPassThrough() |
boolean |
JIPipeGraphNode.isUiLocked() |
| Modifier and Type | Method and Description |
|---|---|
JIPipeAdaptiveParameterSettings |
JIPipeSingleIterationAlgorithm.getAdaptiveParameterSettings() |
JIPipeAdaptiveParameterSettings |
JIPipeMergingAlgorithm.getAdaptiveParameterSettings() |
JIPipeAdaptiveParameterSettings |
JIPipeSimpleIteratingAlgorithm.getAdaptiveParameterSettings() |
JIPipeAdaptiveParameterSettings |
JIPipeIteratingAlgorithm.getAdaptiveParameterSettings() |
JIPipeTextAnnotationMatchingMethod |
JIPipeMergingAlgorithmIterationStepGenerationSettings.getAnnotationMatchingMethod() |
JIPipeTextAnnotationMatchingMethod |
JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.getAnnotationMatchingMethod() |
JIPipeTextAnnotationMatchingMethod |
JIPipeIteratingAlgorithmIterationStepGenerationSettings.getAnnotationMatchingMethod() |
JIPipeTextAnnotationMergeMode |
JIPipeMergingAlgorithmIterationStepGenerationSettings.getAnnotationMergeStrategy() |
JIPipeTextAnnotationMergeMode |
JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.getAnnotationMergeStrategy() |
JIPipeTextAnnotationMergeMode |
JIPipeIteratingAlgorithmIterationStepGenerationSettings.getAnnotationMergeStrategy() |
JIPipeTextAnnotationMergeMode |
JIPipeSingleIterationAlgorithmIterationStepGenerationSettings.getAnnotationMergeStrategy() |
JIPipeTextAnnotationMergeMode |
JIPipeMissingDataGeneratorIterationStepGenerationSettings.getAnnotationMergeStrategy() |
JIPipeColumMatching |
JIPipeMergingAlgorithmIterationStepGenerationSettings.getColumnMatching() |
JIPipeColumMatching |
JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.getColumnMatching() |
JIPipeColumMatching |
JIPipeIteratingAlgorithmIterationStepGenerationSettings.getColumnMatching() |
JIPipeExpressionParameter |
JIPipeMergingAlgorithmIterationStepGenerationSettings.getCustomAnnotationMatching() |
JIPipeExpressionParameter |
JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.getCustomAnnotationMatching() |
JIPipeExpressionParameter |
JIPipeIteratingAlgorithmIterationStepGenerationSettings.getCustomAnnotationMatching() |
StringQueryExpression |
JIPipeMergingAlgorithmIterationStepGenerationSettings.getCustomColumns() |
StringQueryExpression |
JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.getCustomColumns() |
StringQueryExpression |
JIPipeIteratingAlgorithmIterationStepGenerationSettings.getCustomColumns() |
StringQueryExpression |
JIPipeMissingDataGeneratorIterationStepGenerationSettings.getCustomColumns() |
JIPipeDataAnnotationMergeMode |
JIPipeMergingAlgorithmIterationStepGenerationSettings.getDataAnnotationMergeStrategy() |
JIPipeDataAnnotationMergeMode |
JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.getDataAnnotationMergeStrategy() |
JIPipeDataAnnotationMergeMode |
JIPipeIteratingAlgorithmIterationStepGenerationSettings.getDataAnnotationMergeStrategy() |
JIPipeDataAnnotationMergeMode |
JIPipeSingleIterationAlgorithmIterationStepGenerationSettings.getDataAnnotationMergeStrategy() |
JIPipeDataAnnotationMergeMode |
JIPipeMissingDataGeneratorIterationStepGenerationSettings.getDataAnnotationMergeStrategy() |
JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings |
JIPipeIteratingMissingDataGeneratorAlgorithm.getDataBatchGenerationSettings() |
JIPipeSingleIterationAlgorithmIterationStepGenerationSettings |
JIPipeSingleIterationAlgorithm.getDataBatchGenerationSettings() |
JIPipeMergingAlgorithmIterationStepGenerationSettings |
JIPipeMergingAlgorithm.getDataBatchGenerationSettings() |
JIPipeMissingDataGeneratorIterationStepGenerationSettings |
JIPipeMissingDataGeneratorAlgorithm.getDataBatchGenerationSettings() |
JIPipeSimpleIteratingAlgorithmIterationStepGenerationSettings |
JIPipeSimpleIteratingAlgorithm.getDataBatchGenerationSettings() |
JIPipeParameterlessSimpleIteratingAlgorithm.IterationStepGenerationSettings |
JIPipeParameterlessSimpleIteratingAlgorithm.getDataBatchGenerationSettings() |
JIPipeIteratingAlgorithmIterationStepGenerationSettings |
JIPipeIteratingAlgorithm.getDataBatchGenerationSettings() |
JIPipeColumMatching |
JIPipeMissingDataGeneratorIterationStepGenerationSettings.getDataSetMatching() |
OptionalIntegerRange |
JIPipeMergingAlgorithmIterationStepGenerationSettings.getLimit() |
OptionalIntegerRange |
JIPipeParameterlessSimpleIteratingAlgorithm.IterationStepGenerationSettings.getLimit() |
OptionalIntegerRange |
JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.getLimit() |
OptionalIntegerRange |
JIPipeIteratingAlgorithmIterationStepGenerationSettings.getLimit() |
OptionalIntegerRange |
JIPipeMissingDataGeneratorIterationStepGenerationSettings.getLimit() |
OptionalIntegerRange |
JIPipeSimpleIteratingAlgorithmIterationStepGenerationSettings.getLimit() |
String |
JIPipeParameterSlotAlgorithmSettings.getParameterAnnotationsPrefix() |
JIPipeParameterSlotAlgorithmSettings |
JIPipeParameterSlotAlgorithm.getParameterSlotAlgorithmSettings() |
boolean |
JIPipeMissingDataGeneratorIterationStepGenerationSettings.isAllowMerging() |
boolean |
JIPipeParameterSlotAlgorithmSettings.isAttachOnlyNonDefaultParameterAnnotations() |
boolean |
JIPipeParameterSlotAlgorithmSettings.isAttachParameterAnnotations() |
boolean |
JIPipeMergingAlgorithmIterationStepGenerationSettings.isForceFlowGraphSolver() |
boolean |
JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.isForceFlowGraphSolver() |
boolean |
JIPipeIteratingAlgorithmIterationStepGenerationSettings.isForceFlowGraphSolver() |
boolean |
JIPipeMissingDataGeneratorIterationStepGenerationSettings.isForceFlowGraphSolver() |
boolean |
JIPipeMergingAlgorithmIterationStepGenerationSettings.isForceNAIsAny() |
boolean |
JIPipeParameterSlotAlgorithmSettings.isHasParameterSlot() |
boolean |
JIPipeIteratingMissingDataGeneratorAlgorithm.isKeepOriginalAnnotations() |
boolean |
JIPipeMissingDataGeneratorAlgorithm.isKeepOriginalAnnotations() |
boolean |
JIPipeParameterSlotAlgorithmSettings.isParameterAnnotationsUseInternalNames() |
boolean |
JIPipeMergingAlgorithmIterationStepGenerationSettings.isSkipIncompleteDataSets() |
boolean |
JIPipeIteratingAlgorithmIterationStepGenerationSettings.isSkipIncompleteDataSets() |
| Modifier and Type | Method and Description |
|---|---|
int |
JIPipeAnnotationGraphNode.getGridHeight() |
int |
JIPipeAnnotationGraphNode.getGridWidth() |
int |
JIPipeAnnotationGraphNode.getzOrder() |
| Modifier and Type | Method and Description |
|---|---|
SetJIPipeDocumentation |
JIPipeReflectionParameterCollectionContextAction.getDocumentation() |
SetJIPipeDocumentation |
JIPipeDefaultParameterCollectionContextAction.getDocumentation() |
SetJIPipeDocumentation |
JIPipeParameterCollectionContextAction.getDocumentation()
Documentation of this action
|
SetJIPipeDocumentation |
JIPipeReflectionParameterAccess.getDocumentation() |
SetJIPipeDocumentation |
JIPipeParameterTree.getSourceDocumentation(JIPipeParameterCollection source)
Gets source documentation
|
| Modifier and Type | Method and Description |
|---|---|
void |
JIPipeReflectionParameterAccess.setDocumentation(SetJIPipeDocumentation documentation) |
| Constructor and Description |
|---|
JIPipeDefaultParameterCollectionContextAction(SetJIPipeDocumentation documentation,
URL iconURL,
Consumer<JIPipeWorkbench> function) |
JIPipeReflectionParameterCollectionContextAction(Object target,
Method function,
URL iconURL,
SetJIPipeDocumentation documentation) |
| Modifier and Type | Method and Description |
|---|---|
String |
JIPipeProjectDirectories.DirectoryEntry.getDescription() |
JIPipeProjectDirectories |
JIPipeProjectMetadata.getDirectories() |
ParameterCollectionList |
JIPipeProjectDirectories.getDirectories() |
JIPipeDynamicParameterCollection |
JIPipeProjectMetadata.getGlobalParameters() |
String |
JIPipeProjectDirectories.DirectoryEntry.getKey() |
String |
JIPipeProjectDirectories.DirectoryEntry.getName() |
JIPipeNodeTemplate.List |
JIPipeProjectMetadata.getNodeTemplates() |
Path |
JIPipeProjectDirectories.DirectoryEntry.getPath() |
JIPipeProjectPermissions |
JIPipeProjectMetadata.getPermissions() |
String |
JIPipeProjectMetadata.getTemplateDescription() |
JIPipeImageJUpdateSiteDependency.List |
JIPipeProjectMetadata.getUpdateSiteDependencies() |
boolean |
JIPipeProjectMetadata.isAutoAddAuthors() |
boolean |
JIPipeProjectDirectories.DirectoryEntry.isMustExist() |
boolean |
JIPipeProjectPermissions.isPreventAddingDeletingNodes() |
boolean |
JIPipeProjectPermissions.isPreventModifyingSlots() |
boolean |
JIPipeProjectMetadata.isRestoreTabs() |
boolean |
JIPipeProjectMetadata.isShowCompartmentsRunPanelInOverview() |
| Modifier and Type | Method and Description |
|---|---|
OptionalColorParameter |
JIPipeProjectRunSet.getColor() |
HTMLText |
JIPipeProjectRunSet.getDescription() |
String |
JIPipeProjectRunSet.getName() |
GraphNodeReferenceParameter.List |
JIPipeProjectRunSet.getNodes() |
int |
JIPipeGraphRunConfiguration.getNumThreads() |
Path |
JIPipeGraphRunConfiguration.getOutputPath() |
boolean |
JIPipeGraphRunConfiguration.isCleanupOutputsAfterFailure() |
boolean |
JIPipeGraphRunConfiguration.isCleanupOutputsAfterSuccess() |
boolean |
JIPipeGraphRunConfiguration.isLoadFromCache() |
boolean |
JIPipeGraphRunConfiguration.isStoreToCache() |
boolean |
JIPipeGraphRunConfiguration.isStoreToDisk() |
| Modifier and Type | Method and Description |
|---|---|
OptionalColorParameter |
JIPipeRuntimePartition.getColor() |
JIPipeRuntimePartition.ContinueOnFailureSettings |
JIPipeRuntimePartition.getContinueOnFailureSettings() |
HTMLText |
JIPipeRuntimePartition.getDescription() |
JIPipeGraphWrapperAlgorithm.IterationMode |
JIPipeRuntimePartition.getIterationMode() |
JIPipeIteratingAlgorithmIterationStepGenerationSettings |
JIPipeRuntimePartition.getLoopIterationIteratingSettings() |
JIPipeMergingAlgorithmIterationStepGenerationSettings |
JIPipeRuntimePartition.getLoopIterationMergingSettings() |
String |
JIPipeRuntimePartition.getName() |
JIPipeRuntimePartition.OutputSettings |
JIPipeRuntimePartition.getOutputSettings() |
boolean |
JIPipeRuntimePartition.OutputSettings.isAlwaysExportCompartmentOutputs() |
boolean |
JIPipeRuntimePartition.ContinueOnFailureSettings.isContinueOnFailure() |
boolean |
JIPipeRuntimePartition.ContinueOnFailureSettings.isDisableOnUpdateCache() |
boolean |
JIPipeRuntimePartition.isEnableParallelization() |
boolean |
JIPipeRuntimePartition.ContinueOnFailureSettings.isExportFailedLoopInputs() |
boolean |
JIPipeRuntimePartition.ContinueOnFailureSettings.isExportFailedPartitionInputs() |
boolean |
JIPipeRuntimePartition.OutputSettings.isExportHeavyData() |
boolean |
JIPipeRuntimePartition.OutputSettings.isExportLightweightData() |
boolean |
JIPipeRuntimePartition.OutputSettings.isExportLoopIntermediateResults() |
boolean |
JIPipeRuntimePartition.OutputSettings.isExportLoopTerminating() |
boolean |
JIPipeRuntimePartition.isForcePassThroughLoopIterationInCaching() |
| Modifier and Type | Method and Description |
|---|---|
boolean |
JIPipeDesktopProjectReportUI.ReportSettings.isAddAcknowledgements() |
boolean |
JIPipeDesktopProjectReportUI.ReportSettings.isAddAuthors() |
boolean |
JIPipeDesktopProjectReportUI.ReportSettings.isAddCitation() |
boolean |
JIPipeDesktopProjectReportUI.ReportSettings.isAddDependencies() |
boolean |
JIPipeDesktopProjectReportUI.ReportSettings.isAddDependencyCitations() |
boolean |
JIPipeDesktopProjectReportUI.ReportSettings.isAddDescription() |
boolean |
JIPipeDesktopProjectReportUI.ReportSettings.isAddGlobalParameters() |
boolean |
JIPipeDesktopProjectReportUI.ReportSettings.isAddLicence() |
boolean |
JIPipeDesktopProjectReportUI.ReportSettings.isAddListOfUsedNodes() |
boolean |
JIPipeDesktopProjectReportUI.ReportSettings.isAddPipelineTextDescription() |
boolean |
JIPipeDesktopProjectReportUI.ReportSettings.isAddSummary() |
boolean |
JIPipeDesktopProjectReportUI.ReportSettings.isAddTitle() |
boolean |
JIPipeDesktopProjectReportUI.ReportSettings.isAddUserDirectories() |
boolean |
JIPipeDesktopProjectReportUI.ReportSettings.isAddWebsite() |
| Modifier and Type | Method and Description |
|---|---|
JIPipeDataByMetadataExporter |
JIPipeDesktopDataTableToFilesByMetadataExporterRun.Settings.getExporter() |
boolean |
JIPipeDesktopDataTableToFilesByMetadataExporterRun.Settings.isRememberSettings() |
boolean |
JIPipeDesktopDataTableToFilesByMetadataExporterRun.Settings.isSplitBySlotName() |
| Modifier and Type | Method and Description |
|---|---|
JIPipeDynamicParameterCollection |
JIPipeDesktopPlotSeriesEditor.getColumnAssignments() |
JFreeChartPlotData |
JFreeChartPlotEditor.getCurrentPlot() |
String |
JIPipeDesktopPlotSeriesEditor.getName() |
JIPipeDataInfoRef |
JFreeChartPlotEditor.getPlotType() |
boolean |
JIPipeDesktopPlotSeriesEditor.isEnabled() |
| Modifier and Type | Method and Description |
|---|---|
int |
JIPipeDesktopQuickRunSettings.getNumThreads() |
Path |
JIPipeDesktopQuickRunSettings.getOutputPath() |
boolean |
JIPipeDesktopQuickRunSettings.isExcludeSelected() |
boolean |
JIPipeDesktopQuickRunSettings.isLoadFromCache() |
boolean |
JIPipeDesktopQuickRunSettings.isSaveToDisk() |
boolean |
JIPipeDesktopQuickRunSettings.isStoreIntermediateResults() |
boolean |
JIPipeDesktopQuickRunSettings.isStoreToCache() |
| Modifier and Type | Method and Description |
|---|---|
JIPipeParameterCollection |
JIPipeDesktopProjectSettingsUI.SettingsSheetWrapper.getWrapped() |
| Modifier and Type | Method and Description |
|---|---|
JIPipeDynamicParameterCollection |
JIPipeDesktopMergedProjectSettings.getGlobalParameters() |
JIPipeDesktopMergedProjectSettingsUserDirectories |
JIPipeDesktopMergedProjectSettings.getUserDirectoriesSettings() |
| Modifier and Type | Method and Description |
|---|---|
HTMLText |
JIPipeDesktopAddParameterDialog.Settings.getDescription() |
String |
JIPipeDesktopAddParameterDialog.Settings.getId() |
String |
JIPipeDesktopAddParameterDialog.Settings.getName() |
| Modifier and Type | Method and Description |
|---|---|
HTMLText |
JIPipeDesktopDynamicParameterEditorDialog.ParameterEntry.getDescription() |
String |
JIPipeDesktopDynamicParameterEditorDialog.ParameterEntry.getKey() |
String |
JIPipeDesktopDynamicParameterEditorDialog.ParameterEntry.getName() |
JIPipeParameterTypeInfoRef |
JIPipeDesktopDynamicParameterEditorDialog.ParameterEntry.getType() |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateByExpression
Algorithm that annotates all data with the same annotation
|
class |
AnnotateByProjectPaths |
class |
AnnotateWithAnnotationTable
Algorithm that merges the annotations of all inputs and outputs the data with the shared annotations
|
class |
AnnotateWithData |
class |
AnnotateWithDataString
Generates annotations from filenames
|
class |
AnnotateWithSourceSlot
Generates annotations from filenames
|
class |
ConvertToAnnotationTable
Removes a specified annotation
|
class |
DataAnnotationToStringAnnotation |
class |
ExtractAndReplaceAnnotation
Generates annotations from filenames
|
class |
ExtractDataAnnotation |
class |
FilterByAnnotation
Algorithm that splits the input data by a specified annotation
|
class |
FilterByAnnotationIfElse
Algorithm that splits the input data by a specified annotation
|
class |
GenerateRandomUniqueAnnotation
Generates annotations from filenames
|
class |
GenerateUniqueAnnotation
Generates annotations from filenames
|
class |
MergeAnnotations
Algorithm that merges the annotations of all inputs and outputs the data with the shared annotations
|
class |
MergeDataSlots
Merges the input slot tables into one data slot
|
class |
ModifyAnnotationScript
Algorithm that annotates all data with the same annotation
|
class |
OverwriteAnnotations |
class |
RemoveAnnotationAlgorithm
Removes a specified annotation
|
class |
RemoveArrayAnnotationsAlgorithm |
class |
RemoveDataAnnotations |
class |
RemoveNAAnnotationColumnsAlgorithm |
class |
RenameAnnotation
Generates annotations from filenames
|
class |
RenameDataAnnotation
Generates annotations from filenames
|
class |
SetSingleAnnotation
Algorithm that annotates all data with the same annotation
|
class |
SimplifyAnnotationsAlgorithm |
class |
SplitByAnnotation
Algorithm that splits the input data by a specified annotation
|
class |
SplitByAnnotationScript
Algorithm that annotates all data with the same annotation
|
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotationTableFromFile
Imports
AnnotationTableData from a file |
| Modifier and Type | Method and Description |
|---|---|
JIPipeArtifactAccelerationPreference |
JIPipeArtifactApplicationSettings.getAccelerationPreference() |
Vector2iParameter |
JIPipeArtifactApplicationSettings.getAccelerationPreferenceVersions() |
OptionalPathParameter |
JIPipeArtifactApplicationSettings.getOverrideInstallationPath() |
JIPipeArtifactRepositoryReferenceList |
JIPipeArtifactApplicationSettings.getRepositories() |
boolean |
JIPipeArtifactApplicationSettings.isAutoConfigureAccelerationOnNextStartup() |
boolean |
JIPipeArtifactApplicationSettings.isAutoDownload() |
boolean |
JIPipeArtifactApplicationSettings.isShowConnectionIssueBallon() |
| Modifier and Type | Class and Description |
|---|---|
class |
DataBatchStatusData |
| Modifier and Type | Method and Description |
|---|---|
OptionalPythonEnvironment |
CellposePluginProjectSettings.getCellpose2Environment() |
OptionalPythonEnvironment |
CellposePluginProjectSettings.getCellpose3Environment() |
OptionalPythonEnvironment |
Cellpose2PluginApplicationSettings.getDefaultEnvironment() |
OptionalPythonEnvironment |
Cellpose3PluginApplicationSettings.getDefaultEnvironment() |
| Modifier and Type | Class and Description |
|---|---|
class |
ImportCellposeModelFromFileAlgorithm |
class |
ImportCellposeSizeModelFromFileAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
Cellpose2SegmentationInferenceAlgorithm |
class |
Cellpose2TrainingAlgorithm |
class |
ImportPretrainedCellpose2ModelAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
Cellpose2ChannelSettings |
Cellpose2SegmentationInferenceAlgorithm.getChannelSettings() |
Cellpose2ChannelSettings |
Cellpose2TrainingAlgorithm.getChannelSettings() |
OptionalDoubleParameter |
Cellpose2SegmentationInferenceAlgorithm.getDiameter() |
OptionalDoubleParameter |
Cellpose2TrainingAlgorithm.getDiameter() |
OptionalTextAnnotationNameParameter |
Cellpose2SegmentationInferenceAlgorithm.getDiameterAnnotation() |
Cellpose2SegmentationTweaksSettings |
Cellpose2SegmentationInferenceAlgorithm.getEnhancementParameters() |
Cellpose2GPUSettings |
Cellpose2SegmentationInferenceAlgorithm.getGpuSettings() |
Cellpose2GPUSettings |
Cellpose2TrainingAlgorithm.getGpuSettings() |
DataAnnotationQueryExpression |
Cellpose2TrainingAlgorithm.getLabelDataAnnotation() |
OptionalTextAnnotationNameParameter |
ImportPretrainedCellpose2ModelAlgorithm.getModelNameAnnotation() |
PretrainedCellpose2SegmentationModelList |
ImportPretrainedCellpose2ModelAlgorithm.getModels() |
int |
Cellpose2TrainingAlgorithm.getNumEpochs() |
OptionalPythonEnvironment |
Cellpose2SegmentationInferenceAlgorithm.getOverrideEnvironment() |
OptionalPythonEnvironment |
Cellpose2TrainingAlgorithm.getOverrideEnvironment() |
Cellpose2SegmentationOutputSettings |
Cellpose2SegmentationInferenceAlgorithm.getSegmentationOutputSettings() |
Cellpose2SegmentationThresholdSettings |
Cellpose2SegmentationInferenceAlgorithm.getThresholdParameters() |
Cellpose2TrainingTweaksSettings |
Cellpose2TrainingAlgorithm.getTweaksSettings() |
boolean |
Cellpose2SegmentationInferenceAlgorithm.isCleanUpAfterwards() |
boolean |
Cellpose2TrainingAlgorithm.isCleanUpAfterwards() |
boolean |
Cellpose2SegmentationInferenceAlgorithm.isEnable3D() |
boolean |
Cellpose2TrainingAlgorithm.isEnable3D() |
boolean |
Cellpose2SegmentationInferenceAlgorithm.isEnableMultiChannel() |
boolean |
Cellpose2SegmentationInferenceAlgorithm.isSuppressLogs() |
boolean |
Cellpose2TrainingAlgorithm.isSuppressLogs() |
boolean |
Cellpose2TrainingAlgorithm.isTrainSizeModel() |
| Modifier and Type | Class and Description |
|---|---|
class |
Cellpose3DenoiseInferenceAlgorithm |
class |
Cellpose3DenoiseTrainingAlgorithm |
class |
Cellpose3SegmentationInferenceAlgorithm |
class |
Cellpose3SegmentationTrainingAlgorithm |
class |
ImportPretrainedCellpose3DenoiseModelAlgorithm |
class |
ImportPretrainedCellpose3SegmentationModelAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
Cellpose2ChannelSettings |
Cellpose3DenoiseInferenceAlgorithm.getChannelSettings() |
Cellpose2ChannelSettings |
Cellpose3SegmentationInferenceAlgorithm.getChannelSettings() |
Cellpose2ChannelSettings |
Cellpose3SegmentationTrainingAlgorithm.getChannelSettings() |
OptionalDoubleParameter |
Cellpose3DenoiseInferenceAlgorithm.getDiameter() |
OptionalDoubleParameter |
Cellpose3SegmentationInferenceAlgorithm.getDiameter() |
OptionalDoubleParameter |
Cellpose3SegmentationTrainingAlgorithm.getDiameter() |
OptionalDoubleParameter |
Cellpose3DenoiseTrainingAlgorithm.getDiameter() |
OptionalTextAnnotationNameParameter |
Cellpose3DenoiseInferenceAlgorithm.getDiameterAnnotation() |
OptionalTextAnnotationNameParameter |
Cellpose3SegmentationInferenceAlgorithm.getDiameterAnnotation() |
Cellpose3SegmentationTweaksSettings |
Cellpose3SegmentationInferenceAlgorithm.getEnhancementParameters() |
Cellpose2GPUSettings |
Cellpose3DenoiseInferenceAlgorithm.getGpuSettings() |
Cellpose2GPUSettings |
Cellpose3SegmentationInferenceAlgorithm.getGpuSettings() |
Cellpose2GPUSettings |
Cellpose3SegmentationTrainingAlgorithm.getGpuSettings() |
Cellpose2GPUSettings |
Cellpose3DenoiseTrainingAlgorithm.getGpuSettings() |
DataAnnotationQueryExpression |
Cellpose3SegmentationTrainingAlgorithm.getLabelDataAnnotation() |
DataAnnotationQueryExpression |
Cellpose3DenoiseTrainingAlgorithm.getLabelDataAnnotation() |
OptionalTextAnnotationNameParameter |
ImportPretrainedCellpose3DenoiseModelAlgorithm.getModelNameAnnotation() |
OptionalTextAnnotationNameParameter |
ImportPretrainedCellpose3SegmentationModelAlgorithm.getModelNameAnnotation() |
PretrainedCellpose3DenoiseModelList |
ImportPretrainedCellpose3DenoiseModelAlgorithm.getModels() |
PretrainedCellpose3SegmentationModelList |
ImportPretrainedCellpose3SegmentationModelAlgorithm.getModels() |
Cellpose3DenoiseTrainingNoiseSettings |
Cellpose3DenoiseTrainingAlgorithm.getNoiseSettings() |
int |
Cellpose3SegmentationTrainingAlgorithm.getNumEpochs() |
int |
Cellpose3DenoiseTrainingAlgorithm.getNumEpochs() |
OptionalPythonEnvironment |
Cellpose3DenoiseInferenceAlgorithm.getOverrideEnvironment() |
OptionalPythonEnvironment |
Cellpose3SegmentationInferenceAlgorithm.getOverrideEnvironment() |
OptionalPythonEnvironment |
Cellpose3SegmentationTrainingAlgorithm.getOverrideEnvironment() |
OptionalPythonEnvironment |
Cellpose3DenoiseTrainingAlgorithm.getOverrideEnvironment() |
Cellpose2SegmentationOutputSettings |
Cellpose3SegmentationInferenceAlgorithm.getSegmentationOutputSettings() |
Cellpose2SegmentationThresholdSettings |
Cellpose3SegmentationInferenceAlgorithm.getThresholdParameters() |
Cellpose3SegmentationTrainingTweaksSettings |
Cellpose3SegmentationTrainingAlgorithm.getTweaksSettings() |
Cellpose3DenoiseTrainingTweaksSettings |
Cellpose3DenoiseTrainingAlgorithm.getTweaksSettings() |
boolean |
Cellpose3DenoiseInferenceAlgorithm.isCleanUpAfterwards() |
boolean |
Cellpose3SegmentationInferenceAlgorithm.isCleanUpAfterwards() |
boolean |
Cellpose3SegmentationTrainingAlgorithm.isCleanUpAfterwards() |
boolean |
Cellpose3DenoiseTrainingAlgorithm.isCleanUpAfterwards() |
boolean |
Cellpose3SegmentationInferenceAlgorithm.isEnable3D() |
boolean |
Cellpose3DenoiseInferenceAlgorithm.isEnable3DDenoising() |
boolean |
Cellpose3SegmentationTrainingAlgorithm.isEnable3DSegmentation() |
boolean |
Cellpose3DenoiseTrainingAlgorithm.isEnable3DSegmentation() |
boolean |
Cellpose3DenoiseInferenceAlgorithm.isEnableMultiChannel() |
boolean |
Cellpose3SegmentationInferenceAlgorithm.isEnableMultiChannel() |
boolean |
Cellpose3DenoiseInferenceAlgorithm.isSuppressLogs() |
boolean |
Cellpose3SegmentationInferenceAlgorithm.isSuppressLogs() |
boolean |
Cellpose3SegmentationTrainingAlgorithm.isSuppressLogs() |
boolean |
Cellpose3DenoiseTrainingAlgorithm.isSuppressLogs() |
boolean |
Cellpose3SegmentationTrainingAlgorithm.isTrainSizeModel() |
| Modifier and Type | Class and Description |
|---|---|
class |
CellposeModelData
Wrapper around Cellpose models
|
class |
CellposeSizeModelData
Wrapper around Cellpose models
|
| Modifier and Type | Class and Description |
|---|---|
class |
Cellpose1InferenceAlgorithm
Deprecated.
New implementation will be CellposeAlgorithm2 that is based around the Cellpose CLI
|
class |
Cellpose1TrainingAlgorithm
Deprecated.
|
class |
ImportLegacyCellposeModelAlgorithm
Deprecated.
|
class |
ImportLegacyCellposeSizeModelAlgorithm
Deprecated.
|
class |
LegacyCellpose2InferenceAlgorithm
Deprecated.
|
class |
LegacyCellpose2TrainingAlgorithm
Deprecated.
|
| Modifier and Type | Method and Description |
|---|---|
int |
Cellpose1TrainingAlgorithm.getBatchSize()
Deprecated.
|
Cellpose2ChannelSettings |
LegacyCellpose2InferenceAlgorithm.getChannelSettings()
Deprecated.
|
Cellpose2ChannelSettings |
LegacyCellpose2TrainingAlgorithm.getChannelSettings()
Deprecated.
|
int |
Cellpose1TrainingAlgorithm.getDiameter()
Deprecated.
|
OptionalDoubleParameter |
LegacyCellpose2InferenceAlgorithm.getDiameter()
Deprecated.
|
OptionalDoubleParameter |
LegacyCellpose2TrainingAlgorithm.getDiameter()
Deprecated.
|
OptionalDoubleParameter |
Cellpose1InferenceAlgorithm.getDiameter()
Deprecated.
|
OptionalTextAnnotationNameParameter |
LegacyCellpose2InferenceAlgorithm.getDiameterAnnotation()
Deprecated.
|
OptionalTextAnnotationNameParameter |
Cellpose1InferenceAlgorithm.getDiameterAnnotation()
Deprecated.
|
Cellpose2SegmentationTweaksSettings |
LegacyCellpose2InferenceAlgorithm.getEnhancementParameters()
Deprecated.
|
CellposeSegmentationEnhancementSettings_Old |
Cellpose1InferenceAlgorithm.getEnhancementParameters()
Deprecated.
|
Cellpose2GPUSettings |
Cellpose1TrainingAlgorithm.getGpuSettings()
Deprecated.
|
Cellpose2GPUSettings |
LegacyCellpose2InferenceAlgorithm.getGpuSettings()
Deprecated.
|
Cellpose2GPUSettings |
LegacyCellpose2TrainingAlgorithm.getGpuSettings()
Deprecated.
|
DataAnnotationQueryExpression |
Cellpose1TrainingAlgorithm.getLabelDataAnnotation()
Deprecated.
|
DataAnnotationQueryExpression |
LegacyCellpose2TrainingAlgorithm.getLabelDataAnnotation()
Deprecated.
|
double |
Cellpose1TrainingAlgorithm.getLearningRate()
Deprecated.
|
int |
Cellpose1TrainingAlgorithm.getMinTrainMasks()
Deprecated.
|
PretrainedLegacyCellpose2InferenceModel |
LegacyCellpose2InferenceAlgorithm.getModel()
Deprecated.
|
CellposeSegmentationModelSettings_Old |
Cellpose1InferenceAlgorithm.getModelParameters()
Deprecated.
|
OptionalIntegerParameter |
Cellpose1TrainingAlgorithm.getNuclearChannel()
Deprecated.
|
int |
Cellpose1TrainingAlgorithm.getNumEpochs()
Deprecated.
|
int |
LegacyCellpose2TrainingAlgorithm.getNumEpochs()
Deprecated.
|
CellposeSegmentationOutputSettings_Old |
Cellpose1InferenceAlgorithm.getOutputParameters()
Deprecated.
|
OptionalPythonEnvironment |
Cellpose1TrainingAlgorithm.getOverrideEnvironment()
Deprecated.
|
OptionalPythonEnvironment |
LegacyCellpose2InferenceAlgorithm.getOverrideEnvironment()
Deprecated.
|
OptionalPythonEnvironment |
LegacyCellpose2TrainingAlgorithm.getOverrideEnvironment()
Deprecated.
|
OptionalPythonEnvironment |
Cellpose1InferenceAlgorithm.getOverrideEnvironment()
Deprecated.
|
CellposeSegmentationPerformanceSettings_Old |
Cellpose1InferenceAlgorithm.getPerformanceParameters()
Deprecated.
|
PretrainedLegacyCellpose2TrainingModel |
Cellpose1TrainingAlgorithm.getPretrainedModel()
Deprecated.
|
PretrainedLegacyCellpose2TrainingModel |
LegacyCellpose2TrainingAlgorithm.getPretrainedModel()
Deprecated.
|
Cellpose2SegmentationOutputSettings |
LegacyCellpose2InferenceAlgorithm.getSegmentationOutputSettings()
Deprecated.
|
OptionalIntegerParameter |
Cellpose1TrainingAlgorithm.getSegmentedChannel()
Deprecated.
|
Cellpose2SegmentationThresholdSettings |
LegacyCellpose2InferenceAlgorithm.getThresholdParameters()
Deprecated.
|
CellposeSegmentationThresholdSettings_Old |
Cellpose1InferenceAlgorithm.getThresholdParameters()
Deprecated.
|
Cellpose2TrainingTweaksSettings |
LegacyCellpose2TrainingAlgorithm.getTweaksSettings()
Deprecated.
|
double |
Cellpose1TrainingAlgorithm.getWeightDecay()
Deprecated.
|
boolean |
Cellpose1TrainingAlgorithm.isCleanUpAfterwards()
Deprecated.
|
boolean |
LegacyCellpose2InferenceAlgorithm.isCleanUpAfterwards()
Deprecated.
|
boolean |
LegacyCellpose2TrainingAlgorithm.isCleanUpAfterwards()
Deprecated.
|
boolean |
Cellpose1InferenceAlgorithm.isCleanUpAfterwards()
Deprecated.
|
boolean |
Cellpose1TrainingAlgorithm.isConcatenateDownsampledLayers()
Deprecated.
|
boolean |
Cellpose1TrainingAlgorithm.isEnable3DSegmentation()
Deprecated.
|
boolean |
LegacyCellpose2InferenceAlgorithm.isEnable3DSegmentation()
Deprecated.
|
boolean |
LegacyCellpose2TrainingAlgorithm.isEnable3DSegmentation()
Deprecated.
|
boolean |
Cellpose1InferenceAlgorithm.isEnable3DSegmentation()
Deprecated.
|
boolean |
Cellpose1TrainingAlgorithm.isGenerateConnectedComponents()
Deprecated.
|
boolean |
LegacyCellpose2InferenceAlgorithm.isSuppressLogs()
Deprecated.
|
boolean |
LegacyCellpose2TrainingAlgorithm.isSuppressLogs()
Deprecated.
|
boolean |
Cellpose1TrainingAlgorithm.isTrainSizeModel()
Deprecated.
|
boolean |
LegacyCellpose2TrainingAlgorithm.isTrainSizeModel()
Deprecated.
|
boolean |
Cellpose1TrainingAlgorithm.isUseResidualConnections()
Deprecated.
|
boolean |
Cellpose1TrainingAlgorithm.isUseStyleVector()
Deprecated.
|
| Modifier and Type | Class and Description |
|---|---|
class |
LegacyCellposeModelImageJExporter |
class |
LegacyCellposeModelImageJImporter |
class |
LegacyCellposeSizeModelImageJExporter |
class |
LegacyCellposeSizeModelImageJImporter |
| Modifier and Type | Class and Description |
|---|---|
class |
LegacyCellposeModelData
Deprecated.
|
class |
LegacyCellposeSizeModelData
Deprecated.
|
| Modifier and Type | Method and Description |
|---|---|
OptionalDoubleParameter |
CellposeSegmentationEnhancementSettings_Old.getAnisotropy()
Deprecated.
|
int |
CellposeSegmentationPerformanceSettings_Old.getBatchSize()
Deprecated.
|
double |
CellposeSegmentationThresholdSettings_Old.getCellProbabilityThreshold()
Deprecated.
|
double |
CellposeSegmentationThresholdSettings_Old.getFlowThreshold()
Deprecated.
|
double |
CellposeSegmentationModelSettings_Old.getMeanDiameter()
Deprecated.
|
int |
CellposeSegmentationThresholdSettings_Old.getMinSize()
Deprecated.
|
PretrainedLegacyCellpose2InferenceModel |
CellposeSegmentationModelSettings_Old.getModel()
Deprecated.
|
double |
CellposeSegmentationThresholdSettings_Old.getStitchThreshold()
Deprecated.
|
double |
CellposeSegmentationPerformanceSettings_Old.getTileOverlap()
Deprecated.
|
boolean |
CellposeSegmentationEnhancementSettings_Old.isAugment()
Deprecated.
|
boolean |
CellposeSegmentationModelSettings_Old.isEnableGPU()
Deprecated.
|
boolean |
CellposeSegmentationEnhancementSettings_Old.isInterpolate()
Deprecated.
|
boolean |
CellposeSegmentationEnhancementSettings_Old.isNetAverage()
Deprecated.
|
boolean |
CellposeSegmentationEnhancementSettings_Old.isNormalize()
Deprecated.
|
boolean |
CellposeSegmentationOutputSettings_Old.isOutputFlows()
Deprecated.
|
boolean |
CellposeSegmentationOutputSettings_Old.isOutputLabels()
Deprecated.
|
boolean |
CellposeSegmentationOutputSettings_Old.isOutputProbabilities()
Deprecated.
|
boolean |
CellposeSegmentationOutputSettings_Old.isOutputROI()
Deprecated.
|
boolean |
CellposeSegmentationOutputSettings_Old.isOutputStyles()
Deprecated.
|
boolean |
CellposeSegmentationPerformanceSettings_Old.isResample()
Deprecated.
|
boolean |
CellposeSegmentationPerformanceSettings_Old.isTile()
Deprecated.
|
| Modifier and Type | Method and Description |
|---|---|
OptionalDoubleParameter |
Cellpose2SegmentationTweaksSettings.getAnisotropy() |
int |
Cellpose2TrainingTweaksSettings.getBatchSize() |
double |
Cellpose2SegmentationThresholdSettings.getCellProbabilityThreshold() |
double |
Cellpose2SegmentationThresholdSettings.getFlowThreshold() |
OptionalIntegerParameter |
Cellpose2GPUSettings.getGpuDevice() |
double |
Cellpose2TrainingTweaksSettings.getLearningRate() |
int |
Cellpose2TrainingTweaksSettings.getMinTrainMasks() |
OptionalIntegerParameter |
Cellpose2ChannelSettings.getNuclearChannel() |
OptionalIntegerParameter |
Cellpose2ChannelSettings.getSegmentedChannel() |
OptionalDoubleParameter |
Cellpose2SegmentationThresholdSettings.getStitchThreshold() |
double |
Cellpose2TrainingTweaksSettings.getWeightDecay() |
boolean |
Cellpose2ChannelSettings.isAllChannels() |
boolean |
Cellpose2TrainingTweaksSettings.isConcatenateDownsampledLayers() |
boolean |
Cellpose2SegmentationTweaksSettings.isDisableResample() |
boolean |
Cellpose2GPUSettings.isEnableGPU() |
boolean |
Cellpose2SegmentationThresholdSettings.isExcludeOnEdges() |
boolean |
Cellpose2TrainingTweaksSettings.isGenerateConnectedComponents() |
boolean |
Cellpose2SegmentationTweaksSettings.isInterpolate() |
boolean |
Cellpose2ChannelSettings.isInvert() |
boolean |
Cellpose2SegmentationTweaksSettings.isNetAverage() |
boolean |
Cellpose2SegmentationTweaksSettings.isNormalize() |
boolean |
Cellpose2SegmentationOutputSettings.isOutputFlowsD() |
boolean |
Cellpose2SegmentationOutputSettings.isOutputFlowsXY() |
boolean |
Cellpose2SegmentationOutputSettings.isOutputFlowsZ() |
boolean |
Cellpose2SegmentationOutputSettings.isOutputLabels() |
boolean |
Cellpose2SegmentationOutputSettings.isOutputProbabilities() |
boolean |
Cellpose2SegmentationOutputSettings.isOutputROI() |
boolean |
Cellpose2TrainingTweaksSettings.isUseResidualConnections() |
boolean |
Cellpose2TrainingTweaksSettings.isUseStyleVector() |
| Modifier and Type | Method and Description |
|---|---|
OptionalDoubleParameter |
Cellpose3SegmentationTweaksSettings.getAnisotropy() |
int |
Cellpose3SegmentationTrainingTweaksSettings.getBatchSize() |
double |
Cellpose3DenoiseTrainingNoiseSettings.getCustomBeta() |
double |
Cellpose3DenoiseTrainingNoiseSettings.getCustomBlur() |
double |
Cellpose3DenoiseTrainingNoiseSettings.getCustomDownsample() |
double |
Cellpose3DenoiseTrainingNoiseSettings.getCustomGBlur() |
double |
Cellpose3DenoiseTrainingNoiseSettings.getCustomPoisson() |
double |
Cellpose3SegmentationTweaksSettings.getFlow3DSmoothing() |
double |
Cellpose3DenoiseTrainingTweaksSettings.getLambdaPerceptual() |
double |
Cellpose3DenoiseTrainingTweaksSettings.getLambdaReconstruction() |
double |
Cellpose3DenoiseTrainingTweaksSettings.getLambdaSegmentation() |
double |
Cellpose3SegmentationTrainingTweaksSettings.getLearningRate() |
double |
Cellpose3DenoiseTrainingTweaksSettings.getLearningRate() |
OptionalIntegerParameter |
Cellpose3DenoiseTrainingNoiseSettings.getMaxDownsampling() |
int |
Cellpose3SegmentationTrainingTweaksSettings.getMinTrainMasks() |
int |
Cellpose3SegmentationTweaksSettings.getNiter() |
Cellpose3DenoiseTrainingNoiseType |
Cellpose3DenoiseTrainingNoiseSettings.getNoiseType() |
OptionalVector2iParameter |
Cellpose3SegmentationTweaksSettings.getNormalizePercentile() |
OptionalIntegerParameter |
Cellpose3SegmentationTrainingTweaksSettings.getNumTestImagesPerEpoch() |
OptionalIntegerParameter |
Cellpose3DenoiseTrainingTweaksSettings.getNumTestImagesPerEpoch() |
OptionalIntegerParameter |
Cellpose3SegmentationTrainingTweaksSettings.getNumTrainingImagesPerEpoch() |
OptionalIntegerParameter |
Cellpose3DenoiseTrainingTweaksSettings.getNumTrainingImagesPerEpoch() |
PretrainedCellpose3SegmentationModel |
Cellpose3DenoiseTrainingTweaksSettings.getSegmentationModel() |
double |
Cellpose3SegmentationTrainingTweaksSettings.getWeightDecay() |
double |
Cellpose3DenoiseTrainingTweaksSettings.getWeightDecay() |
boolean |
Cellpose3SegmentationTrainingTweaksSettings.isGenerateConnectedComponents() |
boolean |
Cellpose3DenoiseTrainingTweaksSettings.isGenerateConnectedComponents() |
boolean |
Cellpose3SegmentationTweaksSettings.isInterpolate() |
boolean |
Cellpose3SegmentationTweaksSettings.isNormalize() |
boolean |
Cellpose3SegmentationTweaksSettings.isResample() |
OptionalIntegerParameter |
Cellpose3SegmentationTrainingTweaksSettings.isUseSGD() |
| Modifier and Type | Method and Description |
|---|---|
ImageJCalibrationMode |
CLIJPluginApplicationSettings.ContrastEnhancerSettings.getCalibrationMode() |
JIPipeDynamicParameterCollection |
CLIJCommandNode.getClijParameters() |
CLIJPluginApplicationSettings.ContrastEnhancerSettings |
CLIJPluginApplicationSettings.getContrastEnhancerSettings() |
double |
CLIJPluginApplicationSettings.ContrastEnhancerSettings.getCustomMax() |
double |
CLIJPluginApplicationSettings.ContrastEnhancerSettings.getCustomMin() |
int |
CLIJPluginApplicationSettings.getDevice() |
CLIJSplitMode |
CLIJCommandNode.getSplitMode() |
boolean |
CLIJPluginApplicationSettings.ContrastEnhancerSettings.isApplyToAllPlanes() |
boolean |
CLIJPluginApplicationSettings.isAutoCalibrateAfterPulling() |
boolean |
CLIJCommandNode.isAvoidGPUMemory() |
boolean |
CLIJPluginApplicationSettings.ContrastEnhancerSettings.isDuplicateImage() |
boolean |
CLIJCommandNode.isEqualizeReplicateLast() |
| Modifier and Type | Class and Description |
|---|---|
class |
Clij2ExecuteKernelIterating |
class |
Clij2ExecuteKernelSimpleIterating |
class |
Clij2PullAlgorithm |
class |
Clij2PushAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
String |
Clij2ExecuteKernelIterating.getKernelFunction() |
String |
Clij2ExecuteKernelSimpleIterating.getKernelFunction() |
OpenCLKernelScript |
Clij2ExecuteKernelIterating.getKernelScript() |
OpenCLKernelScript |
Clij2ExecuteKernelSimpleIterating.getKernelScript() |
PythonScript |
Clij2ExecuteKernelIterating.getPreprocessingScript() |
PythonScript |
Clij2ExecuteKernelSimpleIterating.getPreprocessingScript() |
JIPipeDynamicParameterCollection |
Clij2ExecuteKernelIterating.getScriptParameters() |
JIPipeDynamicParameterCollection |
Clij2ExecuteKernelSimpleIterating.getScriptParameters() |
boolean |
Clij2PullAlgorithm.isDeallocate() |
| Modifier and Type | Class and Description |
|---|---|
class |
CLIIJ2DataToImageWindowImageJExporter |
class |
CLIJ2DataFromImageWindowImageJImporter |
| Modifier and Type | Class and Description |
|---|---|
class |
CLIJImageData
Contains a CLIJ image
|
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeCommentNode |
| Modifier and Type | Method and Description |
|---|---|
Color |
JIPipeCommentNode.getBackgroundColor() |
IconRef |
JIPipeCommentNode.getIcon() |
Color |
JIPipeCommentNode.getTextColor() |
| Modifier and Type | Method and Description |
|---|---|
Path |
JIPipeDataDirectoryEnvironment.getDirectory() |
JIPipeDataDirectoryEnvironment.List |
JIPipeDataDirectoryEnvironmentApplicationSettings.getPresets() |
| Modifier and Type | Class and Description |
|---|---|
class |
BooleanFalseConstant |
class |
BooleanTrueConstant |
class |
NewLineConstant |
class |
NullConstant |
class |
NumericEulerConstant |
class |
NumericInfinityConstant |
class |
NumericNaNInfinityConstant |
class |
NumericNegativeInfinityConstant |
class |
NumericPiConstant |
class |
NumericTauConstant |
| Modifier and Type | Class and Description |
|---|---|
class |
ContainsStringPredicateFunction |
class |
CopyNFunction |
class |
EvaluateFunction |
class |
ExpressionSequenceFunction |
class |
ForEachFunction |
class |
GlobStringPredicateFunction |
class |
IsNullFunction |
class |
LengthFunction |
class |
ParseJsonFunction |
class |
RemoveDuplicatesFunction |
class |
RunFunctionFunction |
class |
SequenceFunction |
class |
SummarizeVariablesFunction |
class |
VariableExistsFunction |
| Modifier and Type | Class and Description |
|---|---|
class |
CreateArrayFunction |
class |
CreateMapFunction |
class |
CreatePairArrayFunction |
class |
FirstIndexOfFunction |
class |
GetFirstItemFunction |
class |
GetItemFunction |
class |
GetItemOrDefaultFunction |
class |
GetLastItemFunction |
class |
GetMapKeysFunction |
class |
GetMapValuesFunction |
class |
InvertFunction |
class |
LastIndexOfFunction |
class |
SliceAfterFunction |
class |
SliceBeforeFunction |
class |
SliceFunction |
class |
SortAscendingArrayFunction |
class |
SortDescendingArrayFunction |
class |
SummarizeAnnotationsMapFunction |
class |
SummarizeMapFunction |
| Modifier and Type | Class and Description |
|---|---|
class |
CreateHSBColorFunction |
class |
CreateLABColorFunction |
class |
CreateRGBColorFunction |
class |
FalseColorsFunction |
class |
HexToRGBFunction |
class |
HSBToLABFunction |
class |
HSBToRGBFunction |
class |
LABToHSBFunction |
class |
LABToRGBFunction |
class |
RGBToHexFunction |
class |
RGBToHSBFunction |
class |
RGBToLABFunction |
| Modifier and Type | Class and Description |
|---|---|
class |
CaseFunction |
class |
IfElseExprFunction |
class |
IfElseFunction |
class |
SwitchCaseFunction |
class |
SwitchFunction |
class |
SwitchMapFunction |
class |
WhereFunction |
| Modifier and Type | Class and Description |
|---|---|
class |
ToBooleanFunction |
class |
ToIntegerFunction |
class |
ToJsonFunction |
class |
ToNumber2Function |
class |
ToNumberFunction |
class |
ToStringFunction |
| Modifier and Type | Class and Description |
|---|---|
class |
GetDateDayFunction |
class |
GetDateMonthFunction |
class |
GetDateYearFunction |
class |
GetTimeHoursFunction |
class |
GetTimeMinutesFunction |
class |
GetTimeSecondsFunction |
| Modifier and Type | Class and Description |
|---|---|
class |
GetParentDirectoryFunction |
class |
GetPathNameFunction |
class |
IsDirectoryFunction |
class |
IsFileFunction |
class |
PathCombineFunction |
class |
PathExistsFunction |
| Modifier and Type | Class and Description |
|---|---|
class |
DefineUserFunction |
class |
EvaluateUserFunction |
| Modifier and Type | Class and Description |
|---|---|
class |
ClampFunction |
class |
DoubleToStringFunction |
class |
IsFiniteFunction |
class |
IsInfiniteFunction |
class |
IsNaNFunction |
class |
NaNToNumFunction |
class |
PercentageFunction |
class |
RandomFunction |
class |
RoundToDecimalsFunction |
class |
RoundToEvenFunction |
class |
RoundToOddFunction |
| Modifier and Type | Class and Description |
|---|---|
class |
QuantityConvertFunction |
class |
QuantityGetUnitFunction |
class |
QuantityGetValueFunction |
| Modifier and Type | Class and Description |
|---|---|
class |
JavaScriptFunction |
class |
JythonScriptFunction |
| Modifier and Type | Class and Description |
|---|---|
class |
AccumulateFunction |
class |
CumulativeTransformArrayFunction |
class |
HistogramFunction |
class |
HistogramThresholdHuang |
class |
HistogramThresholdImageJDefault |
class |
HistogramThresholdImageJIsoData |
class |
HistogramThresholdIntermodes |
class |
HistogramThresholdIsoData |
class |
HistogramThresholdLi |
class |
HistogramThresholdMaxEntropy |
class |
HistogramThresholdMean |
class |
HistogramThresholdMinError |
class |
HistogramThresholdMinimum |
class |
HistogramThresholdMoments |
class |
HistogramThresholdOtsu |
class |
HistogramThresholdPercentile |
class |
HistogramThresholdRenyi |
class |
HistogramThresholdShanbhag |
class |
HistogramThresholdTriangle |
class |
HistogramThresholdYen |
class |
PercentileFunction |
class |
TransformArrayFunction |
| Modifier and Type | Class and Description |
|---|---|
class |
EqualsStringPredicateFunction |
class |
ExtractRegexMatchesFunction |
class |
RegexStringPredicateFunction |
class |
StringEndsWithPredicateFunction |
class |
StringFirstIndexOfFunction |
class |
StringFixFileNameFunction |
class |
StringFormatFunction |
class |
StringJoinFunction |
class |
StringLastIndexOfFunction |
class |
StringRegexReplaceFunction |
class |
StringReplaceFunction |
class |
StringSliceBeforeFunction |
class |
StringSliceFunction |
class |
StringSplitFunction |
class |
StringStartsWithPredicateFunction |
class |
StringToLowerCaseFunction |
class |
StringToUpperCaseFunction |
class |
StringTrimFunction |
class |
StringTruncateFunction |
| Modifier and Type | Class and Description |
|---|---|
class |
PrintFunction |
| Modifier and Type | Class and Description |
|---|---|
class |
GetVariableFunction |
class |
GetVariableKeysFunction |
class |
GetVariablesAsMapFunction |
class |
GetVariableValuesFunction |
class |
HasVariableFunction |
class |
SetMissingVariableFunction |
class |
SetVariableFunction |
class |
SetVariableIfFunction |
class |
SetVariablesFunction |
| Modifier and Type | Class and Description |
|---|---|
class |
VectorAddFunction |
class |
VectorEuclideanNormFunction |
class |
VectorManhattanNormFunction |
class |
VectorMaximumNormFunction |
class |
VectorMultiplyScalarFunction |
class |
VectorNormalizeFunction |
class |
VectorScalarProductFunction |
class |
VectorSubtractFunction |
| Modifier and Type | Method and Description |
|---|---|
boolean |
JIPipeFilesystemPluginApplicationSettings.isAutoLabelOutputWithFileName() |
boolean |
JIPipeFilesystemPluginApplicationSettings.isRelativizePaths() |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateWithPathProperties |
class |
AnnotationTableToPaths
Filters input files
|
class |
AnnotationToPath
Filters input files
|
class |
ConcatenateByParameter
Applies subfolder navigation to each input folder
|
class |
ConcatenatePaths
Applies subfolder navigation to each input folder
|
class |
ConvertDataToOutputPath
Applies subfolder navigation to each input folder
|
class |
ConvertToExportedPath |
class |
CopyPath
Applies subfolder navigation to each input folder
|
class |
CreateDirectory
Applies subfolder navigation to each input folder
|
class |
ExportData |
class |
ExportDataByParameter |
class |
ExportDataByParameter2 |
class |
ExportDataTable |
class |
ExportDataTableByParameter |
class |
ExtractFileName
Applies subfolder navigation to each input folder
|
class |
ExtractParent
Applies subfolder navigation to each input folder
|
class |
FilterPaths
Filters input files
|
class |
ImportDataRowFolder |
class |
ImportDataTableArchive |
class |
ImportDataTableDirectory |
class |
ListFiles
Algorithm that lists files in each folder
|
class |
ListSubfolders
Algorithms that lists the sub folders for each input folder
|
class |
ModifyPath |
class |
ModifyPathWithExpression |
class |
RelativizeByParameter
Applies subfolder navigation to each input folder
|
class |
RelativizePaths
Applies subfolder navigation to each input folder
|
class |
RenameByString
Applies subfolder navigation to each input folder
|
class |
SimpleFileAnnotationGenerator
Generates annotations from filenames
|
class |
SimpleFolderAnnotationGenerator
Algorithm that generates annotations from folder names
|
class |
SimplePathAnnotationGenerator
Algorithm that generates annotations from folder names
|
| Modifier and Type | Class and Description |
|---|---|
class |
ListZARRDirectoryZIPDatasetsAlgorithm |
class |
ListZARRURIDatasetsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
PathDataFromTableImageJImporter |
class |
PathDataToTableImageJExporter |
| Modifier and Type | Class and Description |
|---|---|
class |
DownloadFilesDataSource |
class |
FileDataSource
Provides an input file
|
class |
FileListDataSource
Provides an input file
|
class |
FolderDataSource
Provides an input folder
|
class |
FolderListDataSource
Provides an input folder
|
class |
OutputFolderDataSource |
class |
PathDataSource
Provides an input file
|
class |
PathFromUserDataSource |
class |
PathListDataSource
Provides an input folder
|
class |
ProjectUserFolderDataSource |
class |
TemporaryFileDataSource |
class |
TemporaryFolderDataSource |
class |
URIListDataSource |
| Modifier and Type | Method and Description |
|---|---|
void |
FileListDataSource.convertPathsToAbsolute() |
void |
PathListDataSource.convertPathsToAbsolute() |
void |
FolderListDataSource.convertPathsToAbsolute() |
void |
FileListDataSource.convertPathsToRelative() |
void |
PathListDataSource.convertPathsToRelative() |
void |
FolderListDataSource.convertPathsToRelative() |
String |
TemporaryFolderDataSource.getBaseName() |
Path |
FileDataSource.getFileName() |
PathList |
FileListDataSource.getFiles() |
Path |
FolderDataSource.getFolderPath() |
PathList |
FolderListDataSource.getFolderPaths() |
String |
ProjectUserFolderDataSource.getKey() |
Path |
PathDataSource.getPath() |
PathIOMode |
PathFromUserDataSource.getPathIOMode() |
PathList |
PathListDataSource.getPaths() |
PathType |
PathFromUserDataSource.getPathType() |
String |
TemporaryFileDataSource.getPrefix() |
String |
TemporaryFileDataSource.getSuffix() |
StringList |
URIListDataSource.getUriList() |
StringList |
DownloadFilesDataSource.getUrls() |
boolean |
PathFromUserDataSource.isMultiple() |
boolean |
PathDataSource.isNeedsToExist() |
boolean |
FolderDataSource.isNeedsToExist() |
boolean |
FileDataSource.isNeedsToExist() |
boolean |
TemporaryFolderDataSource.isUseScratchDirectory() |
| Modifier and Type | Class and Description |
|---|---|
class |
FileData
Data containing a file
|
class |
FolderData
Data that stores a folder
|
class |
PathData
Encapsulates a
Path |
| Modifier and Type | Class and Description |
|---|---|
class |
IteratingFormProcessorAlgorithm |
class |
MergingFormProcessorAlgorithm |
class |
SimpleIteratingFormProcessorAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
JIPipeMergingAlgorithmIterationStepGenerationSettings |
IteratingFormProcessorAlgorithm.getDataBatchGenerationSettings() |
JIPipeSimpleIteratingAlgorithmIterationStepGenerationSettings |
SimpleIteratingFormProcessorAlgorithm.getDataBatchGenerationSettings() |
JIPipeMergingAlgorithmIterationStepGenerationSettings |
MergingFormProcessorAlgorithm.getDataBatchGenerationSettings() |
FormData |
SimpleFormGeneratorAlgorithm.getFormData() |
String |
IteratingFormProcessorAlgorithm.getTabAnnotation() |
String |
SimpleIteratingFormProcessorAlgorithm.getTabAnnotation() |
String |
MergingFormProcessorAlgorithm.getTabAnnotation() |
boolean |
IteratingFormProcessorAlgorithm.isRestoreAnnotations() |
| Modifier and Type | Class and Description |
|---|---|
class |
BooleanFormGeneratorAlgorithm |
class |
DoubleFormGeneratorAlgorithm |
class |
EnumFormGeneratorAlgorithm |
class |
GroupHeaderFormGeneratorAlgorithm |
class |
IntegerFormGeneratorAlgorithm |
class |
PathFormGeneratorAlgorithm |
class |
StringFormGeneratorAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
BooleanFormData |
class |
DoubleFormData |
class |
EnumFormData |
class |
FormData
Base class for any form data.
|
class |
GroupHeaderFormData |
class |
IntegerFormData |
class |
PathFormData |
class |
StringFormData |
| Modifier and Type | Method and Description |
|---|---|
JIPipeTextAnnotationMergeMode |
SingleAnnotationIOSettings.getAnnotationMergeStrategy() |
OptionalTextAnnotationNameParameter |
SingleAnnotationIOSettings.getInputAnnotation() |
OptionalTextAnnotationNameParameter |
SingleAnnotationIOSettings.getOutputAnnotation() |
| Modifier and Type | Class and Description |
|---|---|
class |
ArrowAnnotationGraphNode |
class |
GroupBoxAnnotationGraphNode |
class |
ImageBoxAnnotationGraphNode |
class |
TextBoxAnnotationGraphNode |
| Modifier and Type | Method and Description |
|---|---|
Anchor |
ImageBoxAnnotationGraphNode.ImageParameters.getAnchor() |
Anchor |
AbstractTextBoxAnnotationGraphNode.TextLocationParameters.getAnchor() |
int |
ArrowAnnotationGraphNode.getAngle() |
int |
ArrowAnnotationGraphNode.getArrowSize() |
OptionalColorParameter |
ImageBoxAnnotationGraphNode.ImageParameters.getBackgroundColor() |
Color |
ImageBoxAnnotationGraphNode.ImageParameters.getBorderColor() |
Color |
TextBoxAnnotationGraphNode.ShapeParameters.getBorderColor() |
int |
ImageBoxAnnotationGraphNode.ImageParameters.getBorderThickness() |
int |
TextBoxAnnotationGraphNode.ShapeParameters.getBorderThickness() |
Color |
ArrowAnnotationGraphNode.getColor() |
Color |
AbstractTextBoxAnnotationGraphNode.TextRenderParameters.getColor() |
AbstractTextBoxAnnotationGraphNode.TextRenderParameters |
AbstractTextBoxAnnotationGraphNode.getContentStyle() |
OptionalColorParameter |
TextBoxAnnotationGraphNode.ShapeParameters.getFillColor() |
SizeFitMode |
ImageBoxAnnotationGraphNode.ImageParameters.getFitMode() |
FontFamilyParameter |
AbstractTextBoxAnnotationGraphNode.TextRenderParameters.getFontFamily() |
int |
AbstractTextBoxAnnotationGraphNode.TextRenderParameters.getFontSize() |
FontStyleParameter |
AbstractTextBoxAnnotationGraphNode.TextRenderParameters.getFontStyle() |
ImageParameter |
ImageBoxAnnotationGraphNode.ImageParameters.getImage() |
ImageBoxAnnotationGraphNode.ImageParameters |
ImageBoxAnnotationGraphNode.getImageParameters() |
int |
ArrowAnnotationGraphNode.getLineThickness() |
int |
ImageBoxAnnotationGraphNode.ImageParameters.getMarginBottom() |
int |
AbstractTextBoxAnnotationGraphNode.TextLocationParameters.getMarginBottom() |
int |
ImageBoxAnnotationGraphNode.ImageParameters.getMarginLeft() |
int |
AbstractTextBoxAnnotationGraphNode.TextLocationParameters.getMarginLeft() |
int |
ImageBoxAnnotationGraphNode.ImageParameters.getMarginRight() |
int |
AbstractTextBoxAnnotationGraphNode.TextLocationParameters.getMarginRight() |
int |
ImageBoxAnnotationGraphNode.ImageParameters.getMarginTop() |
int |
AbstractTextBoxAnnotationGraphNode.TextLocationParameters.getMarginTop() |
double |
ImageBoxAnnotationGraphNode.ImageParameters.getScaleX() |
double |
ImageBoxAnnotationGraphNode.ImageParameters.getScaleY() |
TextBoxAnnotationGraphNode.ShapeParameters |
TextBoxAnnotationGraphNode.getShapeParameters() |
String |
AbstractTextBoxAnnotationGraphNode.getTextContent() |
AbstractTextBoxAnnotationGraphNode.TextLocationParameters |
AbstractTextBoxAnnotationGraphNode.getTextLocation() |
String |
AbstractTextBoxAnnotationGraphNode.getTextTitle() |
AbstractTextBoxAnnotationGraphNode.TextRenderParameters |
AbstractTextBoxAnnotationGraphNode.getTitleStyle() |
| Modifier and Type | Class and Description |
|---|---|
class |
ROI3DImageJExporter |
class |
ROI3DImageJImporter |
| Modifier and Type | Class and Description |
|---|---|
class |
ROI3DListData |
| Modifier and Type | Method and Description |
|---|---|
ROI3DMeasurementSetParameter |
Measurement3DSettings.getStatistics() |
boolean |
Measurement3DSettings.isMeasureInPhysicalUnits() |
boolean |
ImageViewerUIROI3DDisplayApplicationSettings.isRenderROIAsVolume() |
boolean |
ImageViewerUIROI3DDisplayApplicationSettings.isShowROI() |
| Modifier and Type | Class and Description |
|---|---|
class |
ImportROI3DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
DistanceMap3DAlgorithm |
class |
ErodedVolumeFraction3DAlgorithm |
class |
Voronoi3DAlgorithm |
class |
Watershed3DSplittingAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
float |
Voronoi3DAlgorithm.getMaxRadius() |
int |
Watershed3DSplittingAlgorithm.getRadius() |
int |
DistanceMap3DAlgorithm.getThreshold() |
int |
ErodedVolumeFraction3DAlgorithm.getThreshold() |
boolean |
DistanceMap3DAlgorithm.isInverse() |
boolean |
ErodedVolumeFraction3DAlgorithm.isInverse() |
| Modifier and Type | Class and Description |
|---|---|
class |
EdgeFilter3DAlgorithm |
class |
FindMaxima3DAlgorithm |
class |
SymmetryFilter3DAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
double |
SymmetryFilter3DAlgorithm.getAlpha() |
double |
EdgeFilter3DAlgorithm.getAlpha() |
float |
FindMaxima3DAlgorithm.getMinThreshold() |
float |
FindMaxima3DAlgorithm.getNoise() |
double |
SymmetryFilter3DAlgorithm.getNormalize() |
int |
SymmetryFilter3DAlgorithm.getRadius() |
float |
FindMaxima3DAlgorithm.getRadiusXY() |
float |
FindMaxima3DAlgorithm.getRadiusZ() |
double |
SymmetryFilter3DAlgorithm.getScaling() |
boolean |
SymmetryFilter3DAlgorithm.isImproved() |
| Modifier and Type | Class and Description |
|---|---|
class |
Fast3DFiltersAdaptiveAlgorithm |
class |
Fast3DFiltersCloseAlgorithm |
class |
Fast3DFiltersLocalMaxAlgorithm |
class |
Fast3DFiltersMaxAlgorithm |
class |
Fast3DFiltersMeanAlgorithm |
class |
Fast3DFiltersMedianAlgorithm |
class |
Fast3DFiltersMinAlgorithm |
class |
Fast3DFiltersOpenAlgorithm |
class |
Fast3DFiltersSobelAlgorithm |
class |
Fast3DFiltersTopHatAlgorithm |
class |
Fast3DFiltersVarianceAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
Quantity |
Fast3DFiltersAlgorithm.getKernelX() |
Quantity |
Fast3DFiltersAlgorithm.getKernelY() |
Quantity |
Fast3DFiltersAlgorithm.getKernelZ() |
int |
Fast3DFiltersAlgorithm.getNumThreads() |
boolean |
Fast3DFiltersAlgorithm.isPreferIsotropicFilter() |
| Modifier and Type | Class and Description |
|---|---|
class |
ExtractOverlay3DAlgorithm |
class |
RemoveOverlay3DAlgorithm |
class |
RenderOverlay3DAlgorithm
Wrapper around
RoiDrawer |
class |
SetOverlay3DAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
Roi3DDrawer |
RenderOverlay3DAlgorithm.getDrawer() |
| Modifier and Type | Class and Description |
|---|---|
class |
ExportROI3DAlgorithm
Deprecated.
|
class |
ExportROI3DAlgorithm2 |
| Modifier and Type | Method and Description |
|---|---|
JIPipeDataByMetadataExporter |
ExportROI3DAlgorithm.getExporter()
Deprecated.
|
DataExportExpressionParameter |
ExportROI3DAlgorithm2.getFilePath() |
Path |
ExportROI3DAlgorithm.getOutputDirectory()
Deprecated.
|
boolean |
ExportROI3DAlgorithm.isRelativeToProjectDir()
Deprecated.
|
| Modifier and Type | Class and Description |
|---|---|
class |
Roi2DToRoi3DConverterAlgorithm |
class |
Roi3DTo3DMeshAlgorithm |
class |
Roi3DToLabelsAlgorithm |
class |
Roi3DToMaskAlgorithm |
class |
Roi3DToRGBAlgorithm |
class |
Roi3DToRoi2DConverterAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
Roi3DDrawer |
Roi3DToRGBAlgorithm.getDrawer() |
Quantity.LengthUnit |
Roi3DTo3DMeshAlgorithm.getMeshLengthUnit() |
String |
Roi3DTo3DMeshAlgorithm.getMeshNamePrefix() |
Neighborhood3D |
Roi2DToRoi3DConverterAlgorithm.getNeighborhood() |
OptionalColorParameter |
Roi3DTo3DMeshAlgorithm.getOverrideMeshColor() |
boolean |
Roi2DToRoi3DConverterAlgorithm.isFast() |
boolean |
Roi2DToRoi3DConverterAlgorithm.isForce2D() |
boolean |
Roi3DTo3DMeshAlgorithm.isForceMeshLengthUnit() |
boolean |
Roi3DTo3DMeshAlgorithm.isPhysicalSizes() |
boolean |
Roi3DTo3DMeshAlgorithm.isSmooth() |
| Modifier and Type | Class and Description |
|---|---|
class |
FilterRoi3DByOverlapAlgorithm |
class |
FilterRoi3DByStatisticsAlgorithm
Wrapper around
RoiManager |
class |
FilterRoi3DListsAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
JIPipeExpressionParameter |
FilterRoi3DListsAlgorithm.getFilter() |
JIPipeExpressionParameter |
FilterRoi3DByStatisticsAlgorithm.getFilters() |
ROI3DMeasurementSetParameter |
FilterRoi3DByStatisticsAlgorithm.getMeasurements() |
JIPipeExpressionParameter |
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.getOverlapFilter() |
ROI3DRelationMeasurementSetParameter |
FilterRoi3DByOverlapAlgorithm.getOverlapFilterMeasurements() |
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings |
FilterRoi3DByOverlapAlgorithm.getRoi1Settings() |
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings |
FilterRoi3DByOverlapAlgorithm.getRoi2Settings() |
boolean |
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.isConsumeOnOverlap() |
boolean |
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.isEnabled() |
boolean |
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.isIgnoreC() |
boolean |
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.isIgnoreT() |
boolean |
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.isInvert() |
boolean |
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.isMeasureInPhysicalUnits() |
boolean |
FilterRoi3DByStatisticsAlgorithm.isMeasureInPhysicalUnits() |
boolean |
FilterRoi3DListsAlgorithm.isOutputEmptyLists() |
boolean |
FilterRoi3DByStatisticsAlgorithm.isOutputEmptyLists() |
boolean |
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.isOutputOverlaps() |
boolean |
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.isPreciseColocalization() |
boolean |
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.isRequireColocalization() |
| Modifier and Type | Class and Description |
|---|---|
class |
FindParticles3DAlgorithm |
class |
Roi3DFromLabelsAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
double |
Roi3DFromLabelsAlgorithm.getMaxParticleSize() |
double |
FindParticles3DAlgorithm.getMaxParticleSize() |
double |
Roi3DFromLabelsAlgorithm.getMaxParticleSphericity() |
double |
FindParticles3DAlgorithm.getMaxParticleSphericity() |
double |
Roi3DFromLabelsAlgorithm.getMinParticleSize() |
double |
FindParticles3DAlgorithm.getMinParticleSize() |
double |
Roi3DFromLabelsAlgorithm.getMinParticleSphericity() |
double |
FindParticles3DAlgorithm.getMinParticleSphericity() |
Neighborhood3D |
FindParticles3DAlgorithm.getNeighborhood() |
boolean |
FindParticles3DAlgorithm.isBlackBackground() |
boolean |
Roi3DFromLabelsAlgorithm.isExcludeEdges() |
boolean |
FindParticles3DAlgorithm.isExcludeEdges() |
boolean |
Roi3DFromLabelsAlgorithm.isMeasureInPhysicalUnits() |
boolean |
FindParticles3DAlgorithm.isMeasureInPhysicalUnits() |
| Modifier and Type | Class and Description |
|---|---|
class |
ExtractRoi3DRelationStatisticsAlgorithm |
class |
ExtractRoi3DStatisticsAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
ROI3DMeasurementSetParameter |
ExtractRoi3DStatisticsAlgorithm.getMeasurements() |
ROI3DRelationMeasurementSetParameter |
ExtractRoi3DRelationStatisticsAlgorithm.getMeasurements() |
boolean |
ExtractRoi3DRelationStatisticsAlgorithm.isIgnoreC() |
boolean |
ExtractRoi3DRelationStatisticsAlgorithm.isIgnoreT() |
boolean |
ExtractRoi3DStatisticsAlgorithm.isMeasureInPhysicalUnits() |
boolean |
ExtractRoi3DRelationStatisticsAlgorithm.isMeasureInPhysicalUnits() |
boolean |
ExtractRoi3DRelationStatisticsAlgorithm.isPreciseColocalization() |
boolean |
ExtractRoi3DRelationStatisticsAlgorithm.isRequireColocalization() |
| Modifier and Type | Class and Description |
|---|---|
class |
MergeROI3DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ExtractROI3DMetadataAlgorithm |
class |
RemoveROI3DMetadataAlgorithm |
class |
SetROI3DMetadataFromTableAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
JIPipeExpressionParameter |
RemoveROI3DMetadataAlgorithm.getFilterExpression() |
OptionalStringParameter |
ExtractROI3DMetadataAlgorithm.getIndexColumn() |
OptionalStringParameter |
ExtractROI3DMetadataAlgorithm.getNameColumn() |
TableColumnSourceExpressionParameter |
SetROI3DMetadataFromTableAlgorithm.getRoiIndexColumn() |
boolean |
SetROI3DMetadataFromTableAlgorithm.isClearBeforeWrite() |
boolean |
SetROI3DMetadataFromTableAlgorithm.isIgnoreMissingRoiIndices() |
| Modifier and Type | Class and Description |
|---|---|
class |
ChangeRoi3DPropertiesAlgorithm |
class |
ChangeRoi3DPropertiesFromExpressionsAlgorithm |
class |
ChangeRoi3DPropertiesFromTableAlgorithm |
class |
ColorRoi3DByNameAlgorithm |
class |
ColorRoi3DByStatisticsAlgorithm
Wrapper around
RoiManager |
class |
ROI3DCalculatorAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
OptionalJIPipeExpressionParameter |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.getCenterX() |
OptionalJIPipeExpressionParameter |
ChangeRoi3DPropertiesFromTableAlgorithm.getCenterX() |
OptionalDoubleParameter |
ChangeRoi3DPropertiesAlgorithm.getCenterX() |
OptionalJIPipeExpressionParameter |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.getCenterY() |
OptionalJIPipeExpressionParameter |
ChangeRoi3DPropertiesFromTableAlgorithm.getCenterY() |
OptionalDoubleParameter |
ChangeRoi3DPropertiesAlgorithm.getCenterY() |
OptionalJIPipeExpressionParameter |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.getCenterZ() |
OptionalJIPipeExpressionParameter |
ChangeRoi3DPropertiesFromTableAlgorithm.getCenterZ() |
OptionalDoubleParameter |
ChangeRoi3DPropertiesAlgorithm.getCenterZ() |
OptionalJIPipeExpressionParameter |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.getChannelLocation() |
OptionalJIPipeExpressionParameter |
ChangeRoi3DPropertiesFromTableAlgorithm.getChannelLocation() |
OptionalIntegerParameter |
ChangeRoi3DPropertiesAlgorithm.getChannelLocation() |
OptionalJIPipeExpressionParameter |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.getFillColor() |
OptionalJIPipeExpressionParameter |
ChangeRoi3DPropertiesFromTableAlgorithm.getFillColor() |
OptionalColorParameter |
ChangeRoi3DPropertiesAlgorithm.getFillColor() |
ROI3DMeasurementColumn |
ColorRoi3DByStatisticsAlgorithm.getFillMeasurement() |
OptionalJIPipeExpressionParameter |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.getFrameLocation() |
OptionalJIPipeExpressionParameter |
ChangeRoi3DPropertiesFromTableAlgorithm.getFrameLocation() |
OptionalIntegerParameter |
ChangeRoi3DPropertiesAlgorithm.getFrameLocation() |
OptionalColorMapParameter |
ColorRoi3DByStatisticsAlgorithm.getMapFillColor() |
OptionalColorMapParameter |
ColorRoi3DByNameAlgorithm.getMapFillColor() |
ROI3DMeasurementSetParameter |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.getMeasurements() |
ParameterCollectionList |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.getMetadataEntries() |
ParameterCollectionList |
ChangeRoi3DPropertiesFromTableAlgorithm.getMetadataEntries() |
String |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.MetadataEntry.getMetadataName() |
String |
ChangeRoi3DPropertiesFromTableAlgorithm.MetadataEntry.getMetadataName() |
OptionalJIPipeExpressionParameter |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.MetadataEntry.getMetadataValue() |
OptionalJIPipeExpressionParameter |
ChangeRoi3DPropertiesFromTableAlgorithm.MetadataEntry.getMetadataValue() |
LogicalOperation |
ROI3DCalculatorAlgorithm.getOperation() |
OptionalJIPipeExpressionParameter |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.getRoiComment() |
OptionalJIPipeExpressionParameter |
ChangeRoi3DPropertiesFromTableAlgorithm.getRoiComment() |
OptionalStringParameter |
ChangeRoi3DPropertiesAlgorithm.getRoiComment() |
OptionalJIPipeExpressionParameter |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.getRoiName() |
OptionalJIPipeExpressionParameter |
ChangeRoi3DPropertiesFromTableAlgorithm.getRoiName() |
OptionalStringParameter |
ChangeRoi3DPropertiesAlgorithm.getRoiName() |
JIPipeExpressionParameter |
ChangeRoi3DPropertiesFromTableAlgorithm.getRowSelector() |
boolean |
ColorRoi3DByStatisticsAlgorithm.isMeasureInPhysicalUnits() |
boolean |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.isMeasureInPhysicalUnits() |
| Modifier and Type | Class and Description |
|---|---|
class |
OutlineRoi3DAlgorithm
Wrapper around
RoiManager |
class |
RemoveBorderRoi3DAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
double |
RemoveBorderRoi3DAlgorithm.getBorderDistance() |
ROI3DOutline |
OutlineRoi3DAlgorithm.getOutline() |
boolean |
OutlineRoi3DAlgorithm.isIgnoreErrors() |
boolean |
RemoveBorderRoi3DAlgorithm.isRemoveInX() |
boolean |
RemoveBorderRoi3DAlgorithm.isRemoveInY() |
boolean |
RemoveBorderRoi3DAlgorithm.isRemoveInZ() |
| Modifier and Type | Class and Description |
|---|---|
class |
ExplodeRoi3DListAlgorithm |
class |
SplitRoi3DIntoConnectedComponentsAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
JIPipeExpressionParameter |
ExplodeRoi3DListAlgorithm.getAnnotationValue() |
OptionalTextAnnotationNameParameter |
SplitRoi3DIntoConnectedComponentsAlgorithm.getComponentNameAnnotation() |
OptionalStringParameter |
ExplodeRoi3DListAlgorithm.getGeneratedAnnotation() |
JIPipeExpressionParameter |
SplitRoi3DIntoConnectedComponentsAlgorithm.getOverlapFilter() |
ROI3DRelationMeasurementSetParameter |
SplitRoi3DIntoConnectedComponentsAlgorithm.getOverlapFilterMeasurements() |
boolean |
SplitRoi3DIntoConnectedComponentsAlgorithm.isIgnoreC() |
boolean |
SplitRoi3DIntoConnectedComponentsAlgorithm.isIgnoreT() |
boolean |
SplitRoi3DIntoConnectedComponentsAlgorithm.isMeasureInPhysicalUnits() |
boolean |
SplitRoi3DIntoConnectedComponentsAlgorithm.isPreciseColocalization() |
boolean |
SplitRoi3DIntoConnectedComponentsAlgorithm.isRequireColocalization() |
| Modifier and Type | Class and Description |
|---|---|
class |
ConstantSpotSegmentation3DAlgorithm |
class |
DifferenceSpotSegmentation3DAlgorithm |
class |
GaussianFitSpotSegmentation3DAlgorithm |
class |
HysteresisSegmentation3DAlgorithm |
class |
IterativeThreshold3DAlgorithm |
class |
LocalMeanSpotSegmentation3DAlgorithm |
class |
NucleiSegmentation3DAlgorithm |
class |
Watershed3DSegmentationAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
ij.process.AutoThresholder.Method |
NucleiSegmentation3DAlgorithm.getAutoThresholdMethod() |
IterativeThreshold3DAlgorithm.CriteriaMethod |
IterativeThreshold3DAlgorithm.getCriteriaMethod() |
OptionalIntegerParameter |
NucleiSegmentation3DAlgorithm.getCustomThreshold() |
float |
DifferenceSpotSegmentation3DAlgorithm.getDifference() |
double |
GaussianFitSpotSegmentation3DAlgorithm.getGaussPC() |
float |
HysteresisSegmentation3DAlgorithm.getHighThreshold() |
int |
ConstantSpotSegmentation3DAlgorithm.getLocalBackground() |
float |
HysteresisSegmentation3DAlgorithm.getLowThreshold() |
int |
GaussianFitSpotSegmentation3DAlgorithm.getMaxRadius() |
int |
SpotSegmentation3DAlgorithm.getMaxVolumePixels() |
int |
IterativeThreshold3DAlgorithm.getMaxVolumePixels() |
int |
IterativeThreshold3DAlgorithm.getMinContrastExp() |
int |
IterativeThreshold3DAlgorithm.getMinThreshold() |
int |
SpotSegmentation3DAlgorithm.getMinVolumePixels() |
int |
IterativeThreshold3DAlgorithm.getMinVolumePixels() |
float |
SeedSegmentationSettings.getRadius() |
float |
LocalMeanSpotSegmentation3DAlgorithm.getRadius0() |
float |
LocalMeanSpotSegmentation3DAlgorithm.getRadius1() |
float |
LocalMeanSpotSegmentation3DAlgorithm.getRadius2() |
SeedSegmentationSettings |
SpotSegmentation3DAlgorithm.getSeedSegmentationSettings() |
SeedSegmentationSettings |
Watershed3DSegmentationAlgorithm.getSeedSegmentationSettings() |
int |
SpotSegmentation3DAlgorithm.getSeedsThreshold() |
int |
Watershed3DSegmentationAlgorithm.getSeedsThreshold() |
SpotSegmentation3DAlgorithm.SpotSegmentationMethod |
SpotSegmentation3DAlgorithm.SpotSegmentationSettings.getSegmentationMethod() |
IterativeThreshold3DAlgorithm.SegmentResultsMethod |
IterativeThreshold3DAlgorithm.getSegmentResultsMethod() |
SpotSegmentation3DAlgorithm.SpotSegmentationSettings |
SpotSegmentation3DAlgorithm.getSpotSegmentationSettings() |
IterativeThreshold3DAlgorithm.ThresholdMethod |
IterativeThreshold3DAlgorithm.getThresholdMethod() |
int |
IterativeThreshold3DAlgorithm.getValueMethod() |
int |
Watershed3DSegmentationAlgorithm.getVoxelsThreshold() |
float |
LocalMeanSpotSegmentation3DAlgorithm.getWeight() |
boolean |
IterativeThreshold3DAlgorithm.isEnableFiltering() |
boolean |
SpotSegmentation3DAlgorithm.isEnableWatershed() |
boolean |
HysteresisSegmentation3DAlgorithm.isLabeling() |
boolean |
SpotSegmentation3DAlgorithm.isOutput32bit() |
boolean |
NucleiSegmentation3DAlgorithm.isSeparateNuclei() |
boolean |
IterativeThreshold3DAlgorithm.isStartsAtMean() |
| Modifier and Type | Method and Description |
|---|---|
double |
Roi3DDrawer.getOpacity() |
OptionalColorParameter |
Roi3DDrawer.getOverrideFillColor() |
boolean |
Roi3DDrawer.isDrawOver() |
| Modifier and Type | Class and Description |
|---|---|
class |
Filaments3DGraphData |
| Modifier and Type | Class and Description |
|---|---|
class |
ConvertFilamentCyclesToROIAlgorithm |
class |
ConvertFilamentsTo3DMeshAlgorithm |
class |
ConvertFilamentsToLabels2Algorithm |
class |
ConvertFilamentsToLabelsAlgorithm |
class |
ConvertFilamentsToMaskAlgorithm |
class |
ConvertFilamentsToRGBAlgorithm |
class |
ConvertFilamentsToRoi3DAlgorithm |
class |
ConvertFilamentsToRoiAlgorithm |
class |
ConvertROIToFilamentsAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
CycleFinderAlgorithm |
ConvertFilamentCyclesToROIAlgorithm.getCycleFinderAlgorithm() |
FilamentsDrawer |
ConvertFilamentsToRGBAlgorithm.getFilamentsDrawer() |
OptionalIntegerParameter |
ConvertFilamentsToLabels2Algorithm.getForcedLineThickness() |
OptionalIntegerParameter |
ConvertFilamentsToRoi3DAlgorithm.getForcedLineThickness() |
OptionalIntegerParameter |
ConvertFilamentsToMaskAlgorithm.getForcedLineThickness() |
OptionalIntegerParameter |
ConvertFilamentsToLabelsAlgorithm.getForcedLineThickness() |
OptionalIntegerParameter |
ConvertFilamentsToRoiAlgorithm.getForcedLineThickness() |
OptionalIntegerParameter |
ConvertFilamentsToLabels2Algorithm.getForcedVertexRadius() |
OptionalIntegerParameter |
ConvertFilamentsToRoi3DAlgorithm.getForcedVertexRadius() |
OptionalIntegerParameter |
ConvertFilamentsToMaskAlgorithm.getForcedVertexRadius() |
OptionalIntegerParameter |
ConvertFilamentsToLabelsAlgorithm.getForcedVertexRadius() |
OptionalIntegerParameter |
ConvertFilamentsToRoiAlgorithm.getForcedVertexRadius() |
Quantity.LengthUnit |
ConvertFilamentsTo3DMeshAlgorithm.getMeshLengthUnit() |
String |
ConvertFilamentsTo3DMeshAlgorithm.getMeshNamePrefix() |
OptionalColorParameter |
ConvertFilamentsTo3DMeshAlgorithm.getOverrideEdgeColor() |
OptionalFloatParameter |
ConvertFilamentsTo3DMeshAlgorithm.getOverrideEdgeRadius() |
OptionalColorParameter |
ConvertFilamentsTo3DMeshAlgorithm.getOverrideVertexColor() |
OptionalFloatParameter |
ConvertFilamentsTo3DMeshAlgorithm.getOverrideVertexRadius() |
JIPipeExpressionParameter |
ConvertFilamentCyclesToROIAlgorithm.getRoiName() |
boolean |
ConvertFilamentsToRGBAlgorithm.isDrawOverReference() |
boolean |
ConvertFilamentsTo3DMeshAlgorithm.isForceMeshLengthUnit() |
boolean |
ConvertFilamentsToLabels2Algorithm.isHollowVertices() |
boolean |
ConvertFilamentsToLabels2Algorithm.isIgnoreC() |
boolean |
ConvertFilamentsToRoiAlgorithm.isIgnoreNon2DEdges() |
boolean |
ConvertFilamentsToLabels2Algorithm.isIgnoreT() |
boolean |
ConvertFilamentsToLabels2Algorithm.isIgnoreZ() |
boolean |
ConvertFilamentsTo3DMeshAlgorithm.isPhysicalSizes() |
boolean |
ConvertFilamentsTo3DMeshAlgorithm.isSplitIntoConnectedComponents() |
boolean |
ConvertFilamentsToRoiAlgorithm.isThinLines() |
boolean |
ConvertFilamentsToLabels2Algorithm.isWithEdges() |
boolean |
ConvertFilamentsToRoi3DAlgorithm.isWithEdges() |
boolean |
ConvertFilamentsTo3DMeshAlgorithm.isWithEdges() |
boolean |
ConvertFilamentsToMaskAlgorithm.isWithEdges() |
boolean |
ConvertFilamentsToLabelsAlgorithm.isWithEdges() |
boolean |
ConvertFilamentsToRoiAlgorithm.isWithEdges() |
boolean |
ConvertFilamentsToLabels2Algorithm.isWithVertices() |
boolean |
ConvertFilamentsToRoi3DAlgorithm.isWithVertices() |
boolean |
ConvertFilamentsTo3DMeshAlgorithm.isWithVertices() |
boolean |
ConvertFilamentsToMaskAlgorithm.isWithVertices() |
boolean |
ConvertFilamentsToLabelsAlgorithm.isWithVertices() |
boolean |
ConvertFilamentsToRoiAlgorithm.isWithVertices() |
| Modifier and Type | Class and Description |
|---|---|
class |
FilterFilamentEdgesByProperties |
class |
FilterFilamentsByProperties |
class |
FilterFilamentVerticesByProperties |
class |
RemoveBorderFilaments |
| Modifier and Type | Method and Description |
|---|---|
double |
RemoveBorderFilaments.getBorderDistance() |
JIPipeExpressionParameter |
FilterFilamentVerticesByProperties.getFilter() |
JIPipeExpressionParameter |
FilterFilamentEdgesByProperties.getFilter() |
JIPipeExpressionParameter |
FilterFilamentsByProperties.getFilter() |
boolean |
RemoveBorderFilaments.isRemoveInX() |
boolean |
RemoveBorderFilaments.isRemoveInY() |
boolean |
RemoveBorderFilaments.isRemoveInZ() |
boolean |
RemoveBorderFilaments.isUseThickness() |
| Modifier and Type | Class and Description |
|---|---|
class |
ImportFilamentsFromJsonAlgorithm |
class |
SkeletonToFilaments2DAlgorithm |
class |
SkeletonToFilaments3DAlgorithm |
class |
SkeletonToSimplifiedFilamentsFijiAlgorithm |
class |
TSOAX2DAlgorithm |
class |
TSOAX3DAlgorithm |
class |
TSOAXResultAnalysisAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
double |
TSOAXEvolutionParameters.getAlpha() |
double |
TSOAXEvolutionParameters.getAssociationThreshold() |
double |
TSOAXEvolutionParameters.getBackgroundZXYRatio() |
double |
TSOAXEvolutionParameters.getBeta() |
double |
TSOAXEvolutionParameters.getC() |
double |
TSOAXConvergenceParameters.getChangeThreshold() |
int |
TSOAXConvergenceParameters.getCheckPeriod() |
TSOAXConvergenceParameters |
TSOAXAlgorithm.getConvergenceParameters() |
double |
TSOAXEvolutionParameters.getDelta() |
TSOAXEvolutionParameters |
TSOAXAlgorithm.getEvolutionParameters() |
double |
TSOAXEvolutionParameters.getExternalFactor() |
double |
TSOAXEvolutionParameters.getGamma() |
double |
TSOAXInitializationParameters.getGaussianStd() |
int |
TSOAXEvolutionParameters.getGroupingDelta() |
double |
TSOAXEvolutionParameters.getGroupingDistanceThreshold() |
TSOAXInitializationParameters |
TSOAXAlgorithm.getInitializationParameters() |
double |
TSOAXInitializationParameters.getIntensityScaling() |
double |
TSOAXInitializationParameters.getMaximumForeground() |
int |
TSOAXConvergenceParameters.getMaximumIterations() |
double |
TSOAXEvolutionParameters.getMinimumAngleForSOACLinking() |
double |
TSOAXInitializationParameters.getMinimumForeground() |
int |
TSOAXConvergenceParameters.getMinimumSnakeLength() |
int |
TSOAXEvolutionParameters.getNumberOfBackgroundRadialSectors() |
double |
TSOAXEvolutionParameters.getOverlapThreshold() |
OptionalTSOAXEnvironment |
TSOAXAlgorithm.getOverrideEnvironment() |
AnalyzeSkeleton2D3DAlgorithm.CycleRemovalMethod |
SkeletonToSimplifiedFilamentsFijiAlgorithm.getPruneCyclesMethod() |
AnalyzeSkeleton2D3DAlgorithm.EndRemovalMethod |
SkeletonToSimplifiedFilamentsFijiAlgorithm.getPruneEndsMethod() |
double |
TSOAXEvolutionParameters.getRadialFar() |
double |
TSOAXEvolutionParameters.getRadialNear() |
double |
TSOAXInitializationParameters.getRidgeThreshold() |
double |
TSOAXInitializationParameters.getSnakePointSpacing() |
double |
TSOAXEvolutionParameters.getStretchFactor() |
OptionalTextAnnotationNameParameter |
TSOAXAlgorithm.getTrackAnnotationName() |
OptionalTextAnnotationNameParameter |
TSOAXResultAnalysisAlgorithm.getTrackAnnotationName() |
OptionalTextAnnotationNameParameter |
TSOAX2DAlgorithm.getzAnnotationName() |
boolean |
TSOAXAlgorithm.isCleanUpAfterwards() |
boolean |
TSOAXEvolutionParameters.isDampZ() |
boolean |
SkeletonToFilaments2DAlgorithm.isForce2D() |
boolean |
TSOAXEvolutionParameters.isGrouping() |
boolean |
TSOAXInitializationParameters.isInitZ() |
boolean |
TSOAXAlgorithm.isSplitByTrack() |
boolean |
TSOAXResultAnalysisAlgorithm.isSplitByTrack() |
| Modifier and Type | Class and Description |
|---|---|
class |
MeasureEdgesAlgorithm |
class |
MeasureFilamentsAlgorithm |
class |
MeasureVerticesAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
MergeFilamentsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ChangeFilamentEdgePropertiesExpressionAlgorithm |
class |
ChangeFilamentEdgePropertiesManuallyAlgorithm |
class |
ChangeFilamentVertexPropertiesExpressionAlgorithm |
class |
ChangeFilamentVertexPropertiesManuallyAlgorithm |
class |
ConnectVerticesAlgorithm |
class |
ConnectVerticesFastAlgorithm |
class |
ErodeEndVerticesAlgorithm |
class |
FilamentCyclesToComponentsAlgorithm |
class |
FindLinearFilamentVertexOrderAlgorithm |
class |
FlattenFilamentsAlgorithm |
class |
GrowEndVerticesAlgorithm |
class |
RemoveVertexValueBackupsAlgorithm |
class |
RestoreVertexValueBackupAlgorithm |
class |
SetFilamentMetadataToComponentIndexAlgorithm |
class |
SetVertexMetadataFromImageAlgorithm |
class |
SetVertexPhysicalSizeFromImageAlgorithm |
class |
SetVertexRadiusFromImageAlgorithm |
class |
SetVertexValueFromImageAlgorithm |
class |
SubdivideFilamentEdges |
| Modifier and Type | Method and Description |
|---|---|
StringAndStringPairParameter.List |
SubdivideFilamentEdges.getAddMetadata() |
JIPipeExpressionParameter |
GrowEndVerticesAlgorithm.getAttitudeExpression() |
JIPipeExpressionParameter |
GrowEndVerticesAlgorithm.getAzimuthExpression() |
JIPipeExpressionParameter |
RemoveVertexValueBackupsAlgorithm.getBackupFilter() |
StringQueryExpression |
RestoreVertexValueBackupAlgorithm.getBackupFilter() |
OptionalStringParameter |
RestoreVertexValueBackupAlgorithm.getBackupOldValue() |
OptionalStringParameter |
SetVertexValueFromImageAlgorithm.getBackupOldValue() |
OptionalStringParameter |
SetVertexValueFromImageAlgorithm.getBackupOldValueToMetadata() |
Vector2iParameter |
ConnectVerticesFastAlgorithm.getCandidateVertexDegreeLimit() |
Vector2dParameter |
ConnectVerticesFastAlgorithm.getCandidateVertexValueLimit() |
JIPipeExpressionParameter |
ChangeFilamentVertexPropertiesExpressionAlgorithm.getCentroidC() |
OptionalIntegerParameter |
ChangeFilamentVertexPropertiesManuallyAlgorithm.getCentroidC() |
JIPipeExpressionParameter |
ChangeFilamentVertexPropertiesExpressionAlgorithm.getCentroidT() |
OptionalIntegerParameter |
ChangeFilamentVertexPropertiesManuallyAlgorithm.getCentroidT() |
JIPipeExpressionParameter |
ChangeFilamentVertexPropertiesExpressionAlgorithm.getCentroidX() |
OptionalDoubleParameter |
ChangeFilamentVertexPropertiesManuallyAlgorithm.getCentroidX() |
JIPipeExpressionParameter |
ChangeFilamentVertexPropertiesExpressionAlgorithm.getCentroidY() |
OptionalDoubleParameter |
ChangeFilamentVertexPropertiesManuallyAlgorithm.getCentroidY() |
JIPipeExpressionParameter |
ChangeFilamentVertexPropertiesExpressionAlgorithm.getCentroidZ() |
OptionalDoubleParameter |
ChangeFilamentVertexPropertiesManuallyAlgorithm.getCentroidZ() |
JIPipeExpressionParameter |
ChangeFilamentVertexPropertiesExpressionAlgorithm.getColor() |
OptionalColorParameter |
ChangeFilamentVertexPropertiesManuallyAlgorithm.getColor() |
JIPipeExpressionParameter |
ChangeFilamentEdgePropertiesExpressionAlgorithm.getColor() |
OptionalColorParameter |
ChangeFilamentEdgePropertiesManuallyAlgorithm.getColor() |
CycleFinderAlgorithm |
FilamentCyclesToComponentsAlgorithm.getCycleFinderAlgorithm() |
OptionalStringParameter |
FilamentCyclesToComponentsAlgorithm.getCycleIdAnnotation() |
JIPipeExpressionParameter |
GrowEndVerticesAlgorithm.getDistanceExpression() |
OptionalStringParameter |
FindLinearFilamentVertexOrderAlgorithm.getDistanceMetadataKey() |
EdgeMaskParameter |
ChangeFilamentEdgePropertiesExpressionAlgorithm.getEdgeMask() |
EdgeMaskParameter |
ChangeFilamentEdgePropertiesManuallyAlgorithm.getEdgeMask() |
JIPipeExpressionParameter |
ConnectVerticesAlgorithm.getFilterFunction() |
int |
ErodeEndVerticesAlgorithm.getIterations() |
int |
GrowEndVerticesAlgorithm.getIterations() |
Vector2dParameter |
ConnectVerticesFastAlgorithm.getLengthRange() |
OptionalIntegerParameter |
ConnectVerticesFastAlgorithm.getLimitConnections() |
OptionalIntegerParameter |
ConnectVerticesAlgorithm.getLimitConnections() |
SortOrder |
ConnectVerticesFastAlgorithm.getLimitConnectionsLengthSortOrder() |
OptionalStringParameter |
FindLinearFilamentVertexOrderAlgorithm.getMaxDistanceMetadataKey() |
OptionalQuantity |
SubdivideFilamentEdges.getMaximumLength() |
OptionalIntegerParameter |
SubdivideFilamentEdges.getMaximumNumIterations() |
ParameterCollectionList |
ChangeFilamentVertexPropertiesExpressionAlgorithm.getMetadata() |
StringAndStringPairParameter.List |
ChangeFilamentVertexPropertiesManuallyAlgorithm.getMetadata() |
ParameterCollectionList |
ChangeFilamentEdgePropertiesExpressionAlgorithm.getMetadata() |
StringAndStringPairParameter.List |
ChangeFilamentEdgePropertiesManuallyAlgorithm.getMetadata() |
String |
SetVertexMetadataFromImageAlgorithm.getMetadataKey() |
String |
SetFilamentMetadataToComponentIndexAlgorithm.getMetadataKey() |
JIPipeExpressionParameter |
RestoreVertexValueBackupAlgorithm.getMissingValue() |
OptionalColorParameter |
ConnectVerticesFastAlgorithm.getNewEdgeColor() |
OptionalColorParameter |
ConnectVerticesAlgorithm.getNewEdgeColor() |
StringAndStringPairParameter.List |
ConnectVerticesFastAlgorithm.getNewEdgeMetadata() |
StringAndStringPairParameter.List |
ConnectVerticesAlgorithm.getNewEdgeMetadata() |
OptionalStringParameter |
FindLinearFilamentVertexOrderAlgorithm.getOrderMetadataKey() |
OptionalDoubleParameter |
SubdivideFilamentEdges.getOverrideRadius() |
OptionalDoubleParameter |
SubdivideFilamentEdges.getOverrideValue() |
JIPipeExpressionParameter |
ChangeFilamentVertexPropertiesExpressionAlgorithm.getPhysicalSizeX() |
OptionalQuantity |
ChangeFilamentVertexPropertiesManuallyAlgorithm.getPhysicalSizeX() |
JIPipeExpressionParameter |
ChangeFilamentVertexPropertiesExpressionAlgorithm.getPhysicalSizeY() |
OptionalQuantity |
ChangeFilamentVertexPropertiesManuallyAlgorithm.getPhysicalSizeY() |
JIPipeExpressionParameter |
ChangeFilamentVertexPropertiesExpressionAlgorithm.getPhysicalSizeZ() |
OptionalQuantity |
ChangeFilamentVertexPropertiesManuallyAlgorithm.getPhysicalSizeZ() |
JIPipeExpressionParameter |
ChangeFilamentVertexPropertiesExpressionAlgorithm.getRadius() |
OptionalDoubleParameter |
ChangeFilamentVertexPropertiesManuallyAlgorithm.getRadius() |
JIPipeExpressionParameter |
ConnectVerticesAlgorithm.getScoringFunction() |
OptionalJIPipeExpressionParameter |
ConnectVerticesFastAlgorithm.getSourceVertexFilter() |
OptionalJIPipeExpressionParameter |
ConnectVerticesAlgorithm.getSourceVertexFilter() |
JIPipeExpressionParameter |
FindLinearFilamentVertexOrderAlgorithm.getStartPointSelectorFunction() |
OptionalJIPipeExpressionParameter |
ConnectVerticesFastAlgorithm.getTargetVertexFilter() |
OptionalJIPipeExpressionParameter |
ConnectVerticesAlgorithm.getTargetVertexFilter() |
JIPipeExpressionParameter |
ChangeFilamentVertexPropertiesExpressionAlgorithm.getValue() |
OptionalDoubleParameter |
ChangeFilamentVertexPropertiesManuallyAlgorithm.getValue() |
VertexMaskParameter |
RemoveVertexValueBackupsAlgorithm.getVertexMask() |
VertexMaskParameter |
ChangeFilamentVertexPropertiesExpressionAlgorithm.getVertexMask() |
VertexMaskParameter |
SetVertexRadiusFromImageAlgorithm.getVertexMask() |
VertexMaskParameter |
ErodeEndVerticesAlgorithm.getVertexMask() |
VertexMaskParameter |
RestoreVertexValueBackupAlgorithm.getVertexMask() |
VertexMaskParameter |
SetVertexValueFromImageAlgorithm.getVertexMask() |
VertexMaskParameter |
ChangeFilamentVertexPropertiesManuallyAlgorithm.getVertexMask() |
VertexMaskParameter |
GrowEndVerticesAlgorithm.getVertexMask() |
boolean |
ConnectVerticesFastAlgorithm.isConnectAcrossC() |
boolean |
ConnectVerticesAlgorithm.isConnectAcrossC() |
boolean |
ConnectVerticesFastAlgorithm.isConnectAcrossT() |
boolean |
ConnectVerticesAlgorithm.isConnectAcrossT() |
boolean |
ConnectVerticesFastAlgorithm.isEnable3D() |
boolean |
ConnectVerticesAlgorithm.isEnable3D() |
boolean |
ConnectVerticesFastAlgorithm.isEnforceEdgesWithinMask() |
boolean |
ConnectVerticesAlgorithm.isEnforceEdgesWithinMask() |
boolean |
ConnectVerticesAlgorithm.isFindPath() |
boolean |
ConnectVerticesFastAlgorithm.isIgnoreIfHasPath() |
boolean |
ConnectVerticesFastAlgorithm.isIgnoreLimitConnectionsForSource() |
boolean |
ConnectVerticesAlgorithm.isIgnoreLimitConnectionsForSource() |
boolean |
ConnectVerticesFastAlgorithm.isIgnoreLimitConnectionsForTarget() |
boolean |
ConnectVerticesAlgorithm.isIgnoreLimitConnectionsForTarget() |
boolean |
ConnectVerticesAlgorithm.isRequireDirection() |
| Modifier and Type | Class and Description |
|---|---|
class |
SetOverlayFilamentsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
CopyFilamentsAcrossZCTAlgorithm |
class |
FixOverlapsNonBranchingAlgorithm |
class |
RemoveDuplicateVerticesAlgorithm |
class |
SimplifyFilamentsAlgorithm |
class |
SmoothFilamentsAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
JIPipeExpressionParameter |
CopyFilamentsAcrossZCTAlgorithm.NewEdgesSettings.getColor() |
CopyFilamentsAcrossZCTAlgorithm.NewEdgesSettings |
CopyFilamentsAcrossZCTAlgorithm.getConnectNewVerticesToStartSettings() |
CopyFilamentsAcrossZCTAlgorithm.NewEdgesSettings |
CopyFilamentsAcrossZCTAlgorithm.getConnectOverDimensionLinearSettings() |
HyperstackDimension |
CopyFilamentsAcrossZCTAlgorithm.getDimension() |
double |
SmoothFilamentsAlgorithm.getFactorX() |
double |
SmoothFilamentsAlgorithm.getFactorY() |
double |
SmoothFilamentsAlgorithm.getFactorZ() |
OptionalJIPipeExpressionParameter |
CopyFilamentsAcrossZCTAlgorithm.NewEdgesSettings.getFilter() |
JIPipeExpressionParameter |
FixOverlapsNonBranchingAlgorithm.getFilterFunction() |
JIPipeExpressionParameter |
SmoothFilamentsAlgorithm.getLocationMergingFunction() |
JIPipeExpressionParameter |
CopyFilamentsAcrossZCTAlgorithm.getLocations() |
ParameterCollectionList |
CopyFilamentsAcrossZCTAlgorithm.NewEdgesSettings.getMetadata() |
OptionalColorParameter |
FixOverlapsNonBranchingAlgorithm.getNewEdgeColor() |
JIPipeExpressionParameter |
FixOverlapsNonBranchingAlgorithm.getScoringFunction() |
VertexMaskParameter |
CopyFilamentsAcrossZCTAlgorithm.getVertexMask() |
boolean |
FixOverlapsNonBranchingAlgorithm.isConnectAcrossC() |
boolean |
FixOverlapsNonBranchingAlgorithm.isConnectAcrossT() |
boolean |
CopyFilamentsAcrossZCTAlgorithm.isConnectNewVerticesToStart() |
boolean |
CopyFilamentsAcrossZCTAlgorithm.isConnectOverDimensionLinear() |
boolean |
CopyFilamentsAcrossZCTAlgorithm.isCopyOriginalEdges() |
boolean |
FixOverlapsNonBranchingAlgorithm.isEnable3D() |
boolean |
FixOverlapsNonBranchingAlgorithm.isEnforceEdgesWithinMask() |
boolean |
SmoothFilamentsAlgorithm.isEnforceSameComponent() |
boolean |
FixOverlapsNonBranchingAlgorithm.isEnforceSameComponent() |
boolean |
FixOverlapsNonBranchingAlgorithm.isEnsureNoPathExists() |
boolean |
FixOverlapsNonBranchingAlgorithm.isExcludeExistingEndpoints() |
boolean |
RemoveDuplicateVerticesAlgorithm.isOnlySameComponent() |
| Modifier and Type | Class and Description |
|---|---|
class |
SplitFilamentsIntoConnectedComponentsAlgorithm |
class |
SplitFilamentsIntoCyclesAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
OptionalTextAnnotationNameParameter |
SplitFilamentsIntoConnectedComponentsAlgorithm.getComponentIdAnnotation() |
OptionalTextAnnotationNameParameter |
SplitFilamentsIntoCyclesAlgorithm.getCycleIdAnnotation() |
| Modifier and Type | Method and Description |
|---|---|
String |
FilamentsVertexMetadataEntry.getKey() |
String |
FilamentEdgeMetadataEntry.getKey() |
JIPipeExpressionParameter |
FilamentsVertexMetadataEntry.getValue() |
JIPipeExpressionParameter |
FilamentEdgeMetadataEntry.getValue() |
| Modifier and Type | Method and Description |
|---|---|
JIPipeExpressionParameter |
EdgeMaskParameter.getFilter() |
OptionalJIPipeExpressionParameter |
VertexMaskParameter.getFilter() |
| Modifier and Type | Method and Description |
|---|---|
OptionalTSOAXEnvironment |
TSOAXApplicationSettings.getDefaultEnvironment() |
FilamentsDrawer |
ImageViewerUIFilamentDisplayApplicationSettings.getFilamentDrawer() |
TSOAXEnvironment.List |
TSOAXApplicationSettings.getPresets() |
OptionalTSOAXEnvironment |
FilamentsPluginProjectSettings.getProjectDefaultTSOAXEnvironment() |
boolean |
ImageViewerUIFilamentDisplayApplicationSettings.isShowFilaments() |
| Modifier and Type | Method and Description |
|---|---|
ImageBlendMode |
FilamentsDrawer.getBlendMode() |
double |
FilamentsDrawer.getOpacity() |
OptionalColorParameter |
FilamentsDrawer.getOverrideEdgeColor() |
OptionalIntegerParameter |
FilamentsDrawer.getOverrideEdgeThickness() |
OptionalColorParameter |
FilamentsDrawer.getOverrideVertexColor() |
OptionalIntegerParameter |
FilamentsDrawer.getOverrideVertexRadius() |
boolean |
FilamentsDrawer.isDrawEdges() |
boolean |
FilamentsDrawer.isDrawVertices() |
boolean |
FilamentsDrawer.isHollowVertices() |
boolean |
FilamentsDrawer.isIgnoreC() |
boolean |
FilamentsDrawer.isIgnoreT() |
boolean |
FilamentsDrawer.isIgnoreZ() |
| Modifier and Type | Class and Description |
|---|---|
class |
MultiTemplateMatchingAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
void |
MultiTemplateMatchingAlgorithm.generateRotations(JIPipeWorkbench workbench) |
OptionalColorParameter |
MultiTemplateMatchingAlgorithm.getAssembleTemplatesBackground() |
OptionalDataInfoRefParameter |
MultiTemplateMatchingAlgorithm.getAssembleTemplatesOutput() |
int |
MultiTemplateMatchingAlgorithm.getExpectedNumberOfObjects() |
double |
MultiTemplateMatchingAlgorithm.getMultiObjectMaximumBoundingBoxOverlap() |
double |
MultiTemplateMatchingAlgorithm.getMultiObjectScoreThreshold() |
IntegerRange |
MultiTemplateMatchingAlgorithm.getRotateTemplate() |
TemplateMatchingMethod |
MultiTemplateMatchingAlgorithm.getTemplateMatchingMethod() |
boolean |
MultiTemplateMatchingAlgorithm.isAssembleTemplates() |
boolean |
MultiTemplateMatchingAlgorithm.isFlipTemplateHorizontally() |
boolean |
MultiTemplateMatchingAlgorithm.isFlipTemplateVertically() |
boolean |
MultiTemplateMatchingAlgorithm.isOutputMatchedTemplates() |
boolean |
MultiTemplateMatchingAlgorithm.isRestrictToROI() |
boolean |
MultiTemplateMatchingAlgorithm.isWithNonMaximaSuppression() |
| Modifier and Type | Class and Description |
|---|---|
class |
TesseractOCRAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
TesseractOCREngineMode |
TesseractOCRAlgorithm.getEngineMode() |
DynamicStringSetParameter |
TesseractOCRAlgorithm.getLanguages() |
OptionalJIPipeExpressionParameter |
TesseractOCRAlgorithm.getOverrideCharAllowList() |
OptionalJIPipeExpressionParameter |
TesseractOCRAlgorithm.getOverrideDPI() |
OptionalTesseractOCREnvironment |
TesseractOCRAlgorithm.getOverrideTesseractOCREnvironment() |
TesseractPageSegmentationMethod |
TesseractOCRAlgorithm.getPageSegmentationMethod() |
| Modifier and Type | Method and Description |
|---|---|
OptionalTesseractOCREnvironment |
TesseractOCRApplicationSettings.getDefaultEnvironment() |
TesseractOCREnvironment.List |
TesseractOCRApplicationSettings.getPresets() |
OptionalTesseractOCREnvironment |
OCRPluginProjectSettings.getProjectDefaultEnvironment() |
| Modifier and Type | Class and Description |
|---|---|
class |
ModelData |
class |
SpotDetectorData |
class |
SpotsCollectionData |
class |
SpotTrackerData |
class |
TrackCollectionData |
| Modifier and Type | Class and Description |
|---|---|
class |
ConvertSpotsToRoiNode |
class |
ConvertTracksToRoiNode |
| Modifier and Type | Method and Description |
|---|---|
NamedTextAnnotationGeneratorExpression.List |
ConvertTracksToRoiNode.getAnnotationGenerator() |
OptionalJIPipeExpressionParameter |
ConvertSpotsToRoiNode.getFillColor() |
OptionalJIPipeExpressionParameter |
ConvertTracksToRoiNode.getFillColor() |
OptionalJIPipeExpressionParameter |
ConvertSpotsToRoiNode.getLineColor() |
OptionalJIPipeExpressionParameter |
ConvertTracksToRoiNode.getLineColor() |
OptionalJIPipeExpressionParameter |
ConvertSpotsToRoiNode.getLineWidth() |
OptionalJIPipeExpressionParameter |
ConvertTracksToRoiNode.getLineWidth() |
OptionalJIPipeExpressionParameter |
ConvertSpotsToRoiNode.getRoiName() |
OptionalJIPipeExpressionParameter |
ConvertTracksToRoiNode.getRoiName() |
| Modifier and Type | Method and Description |
|---|---|
JIPipeDynamicParameterCollection |
CreateSpotTrackerNode.getParameters() |
JIPipeDynamicParameterCollection |
CreateSpotDetectorNode.getParameters() |
| Modifier and Type | Class and Description |
|---|---|
class |
MeasureSpotsNode |
class |
MergeSpotsNode |
class |
SplitSpotsNode |
class |
SpotDetectorNode |
class |
SpotFilterNode |
class |
SpotsToRGBNode |
| Modifier and Type | Method and Description |
|---|---|
NamedTextAnnotationGeneratorExpression.List |
SplitSpotsNode.getAnnotationGenerator() |
JIPipeExpressionParameter |
SpotFilterNode.getFilter() |
double |
SpotsToRGBNode.getMagnification() |
SpotDrawer |
SpotsToRGBNode.getSpotDrawer() |
| Modifier and Type | Class and Description |
|---|---|
class |
FollowSpotsPerTrackNode |
class |
MeasureBranchesNode |
class |
MeasureEdgesNode |
class |
MeasureTracksNode |
class |
MergeTracksNode |
class |
SplitTracksNode |
class |
TrackFilterNode |
class |
TrackingNode |
class |
TrackSchemeRendererNode |
class |
TracksToRGBNode |
| Modifier and Type | Method and Description |
|---|---|
NamedTextAnnotationGeneratorExpression.List |
SplitTracksNode.getAnnotationGenerator() |
JIPipeExpressionParameter |
TrackFilterNode.getFilter() |
double |
TracksToRGBNode.getMagnification() |
int |
FollowSpotsPerTrackNode.getMinHeight() |
int |
FollowSpotsPerTrackNode.getMinWidth() |
TrackDrawer |
TracksToRGBNode.getTrackDrawer() |
OptionalTextAnnotationNameParameter |
FollowSpotsPerTrackNode.getTrackIDAnnotation() |
boolean |
FollowSpotsPerTrackNode.isCropT() |
boolean |
FollowSpotsPerTrackNode.isCropXY() |
boolean |
FollowSpotsPerTrackNode.isCropZ() |
| Modifier and Type | Method and Description |
|---|---|
SpotFeature |
SpotFeatureFilterParameter.getFeature() |
SpotFeature |
SpotFeaturePenaltyParameter.getFeature() |
TrackFeature |
TrackFeatureFilterParameter.getFeature() |
double |
SpotFeaturePenaltyParameter.getPenalty() |
double |
SpotFeatureFilterParameter.getValue() |
double |
TrackFeatureFilterParameter.getValue() |
boolean |
SpotFeatureFilterParameter.isAbove() |
boolean |
TrackFeatureFilterParameter.isAbove() |
| Modifier and Type | Method and Description |
|---|---|
SpotDrawer |
ImageViewerUISpotsDisplayApplicationSettings.getSpotDrawer() |
TrackDrawer |
ImageViewerUITracksDisplayApplicationSettings.getTrackDrawer() |
boolean |
ImageViewerUISpotsDisplayApplicationSettings.isShowSpots() |
boolean |
ImageViewerUITracksDisplayApplicationSettings.isShowTracks() |
| Modifier and Type | Method and Description |
|---|---|
SpotFeature |
SpotDrawer.LabelSettings.getDrawnFeature() |
int |
TrackDrawer.getFadeTrackRange() |
OptionalColorParameter |
DrawerLabelSettings.getLabelBackground() |
Color |
DrawerLabelSettings.getLabelForeground() |
SpotDrawer.LabelSettings |
SpotDrawer.getLabelSettings() |
int |
DrawerLabelSettings.getLabelSize() |
Color |
TrackDrawer.getStrokeColor() |
Color |
SpotDrawer.getStrokeColor() |
EdgeFeature |
TrackDrawer.getStrokeColorEdgeFeature() |
SpotFeature |
SpotDrawer.getStrokeColorFeature() |
TrackDrawer.StrokeColorMode |
TrackDrawer.getStrokeColorMode() |
TrackFeature |
TrackDrawer.getStrokeColorTrackFeature() |
int |
TrackDrawer.getStrokeWidth() |
int |
SpotDrawer.getStrokeWidth() |
fiji.plugin.trackmate.gui.displaysettings.DisplaySettings.TrackDisplayMode |
TrackDrawer.getTrackDisplayMode() |
boolean |
DrawerLabelSettings.isDrawLabels() |
boolean |
SpotDrawer.LabelSettings.isDrawName() |
boolean |
SpotDrawer.isFillSpots() |
boolean |
SpotDrawer.isUniformStrokeColor() |
| Modifier and Type | Class and Description |
|---|---|
class |
WekaModelData
Wrapper around Cellpose models
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImportWekaModelFromFileAlgorithm |
class |
WekaClassification2DAlgorithm |
class |
WekaClassification3DAlgorithm |
class |
WekaTrainingLabels2DAlgorithm |
class |
WekaTrainingLabels2DAlgorithm2 |
class |
WekaTrainingMask2DAlgorithm |
class |
WekaTrainingMask2DAlgorithm2 |
class |
WekaTrainingROI2DAlgorithm |
class |
WekaTrainingROI3DAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
WekaClassifierParameter |
WekaClassifierSettings.getClassifier() |
boolean |
WekaClassifierSettings.isBalanceClasses() |
| Modifier and Type | Method and Description |
|---|---|
BorderMode |
WekaTiling2DSettings.getBorderMode() |
float |
WekaFeature3DSettings.getMaxSigma() |
float |
WekaFeature2DSettings.getMaxSigma() |
int |
WekaFeature3DSettings.getMembranePatchSize() |
int |
WekaFeature2DSettings.getMembranePatchSize() |
int |
WekaFeature3DSettings.getMembraneSize() |
int |
WekaFeature2DSettings.getMembraneSize() |
float |
WekaFeature3DSettings.getMinSigma() |
float |
WekaFeature2DSettings.getMinSigma() |
int |
WekaTiling2DSettings.getOverlapX() |
int |
WekaTiling2DSettings.getOverlapY() |
int |
WekaTiling3DSettings.getTileSizeX() |
int |
WekaTiling2DSettings.getTileSizeX() |
int |
WekaTiling3DSettings.getTileSizeY() |
int |
WekaTiling2DSettings.getTileSizeY() |
int |
WekaTiling3DSettings.getTileSizeZ() |
WekaFeatureSet3D |
WekaFeature3DSettings.getTrainingFeatures() |
WekaFeatureSet2D |
WekaFeature2DSettings.getTrainingFeatures() |
boolean |
WekaTiling3DSettings.isApplyTiling() |
boolean |
WekaTiling2DSettings.isApplyTiling() |
boolean |
WekaFeature3DSettings.isUseNeighbors() |
boolean |
WekaFeature2DSettings.isUseNeighbors() |
boolean |
WekaTiling2DSettings.isUseWekaNativeTiling() |
| Modifier and Type | Class and Description |
|---|---|
class |
IlastikModelData |
| Modifier and Type | Class and Description |
|---|---|
class |
ExportIlastikHDF5ImageAlgorithm |
class |
IlastikAutoContextAlgorithm |
class |
IlastikObjectClassificationAlgorithm |
class |
IlastikPixelClassificationAlgorithm |
class |
IlastikPredictionMapsObjectClassificationAlgorithm |
class |
IlastikSegmentationImageObjectClassificationAlgorithm |
class |
ImportIlastikHDF5ImageAlgorithm |
class |
ImportIlastikModel |
| Modifier and Type | Method and Description |
|---|---|
CalibrationParameters |
ImportIlastikHDF5ImageAlgorithm.getCalibrationParameters() |
DataExportExpressionParameter |
ExportIlastikHDF5ImageAlgorithm.getFilePath() |
JIPipeExpressionParameter |
ExportIlastikHDF5ImageAlgorithm.getHdf5Path() |
JIPipeExpressionParameter |
ImportIlastikHDF5ImageAlgorithm.getHdf5Path() |
IlastikAutoContextAlgorithm.OutputParameters |
IlastikAutoContextAlgorithm.getOutputParameters() |
IlastikPredictionMapsObjectClassificationAlgorithm.OutputParameters |
IlastikPredictionMapsObjectClassificationAlgorithm.getOutputParameters() |
IlastikSegmentationImageObjectClassificationAlgorithm.OutputParameters |
IlastikSegmentationImageObjectClassificationAlgorithm.getOutputParameters() |
IlastikPixelClassificationAlgorithm.OutputParameters |
IlastikPixelClassificationAlgorithm.getOutputParameters() |
IlastikObjectClassificationAlgorithm.OutputParameters |
IlastikObjectClassificationAlgorithm.getOutputParameters() |
OptionalStringParameter |
ExportIlastikHDF5ImageAlgorithm.getOverrideAxes() |
OptionalStringParameter |
ImportIlastikHDF5ImageAlgorithm.getOverrideAxes() |
OptionalIlastikEnvironment |
IlastikAutoContextAlgorithm.getOverrideEnvironment() |
OptionalIlastikEnvironment |
IlastikPredictionMapsObjectClassificationAlgorithm.getOverrideEnvironment() |
OptionalIlastikEnvironment |
IlastikSegmentationImageObjectClassificationAlgorithm.getOverrideEnvironment() |
OptionalIlastikEnvironment |
IlastikPixelClassificationAlgorithm.getOverrideEnvironment() |
OptionalIlastikEnvironment |
IlastikObjectClassificationAlgorithm.getOverrideEnvironment() |
DataAnnotationQueryExpression |
IlastikPredictionMapsObjectClassificationAlgorithm.getPredictionMapsDataAnnotation() |
IlastikProjectValidationMode |
IlastikAutoContextAlgorithm.getProjectValidationMode() |
IlastikProjectValidationMode |
IlastikPredictionMapsObjectClassificationAlgorithm.getProjectValidationMode() |
IlastikProjectValidationMode |
IlastikSegmentationImageObjectClassificationAlgorithm.getProjectValidationMode() |
IlastikProjectValidationMode |
IlastikPixelClassificationAlgorithm.getProjectValidationMode() |
IlastikProjectValidationMode |
IlastikObjectClassificationAlgorithm.getProjectValidationMode() |
DataAnnotationQueryExpression |
IlastikSegmentationImageObjectClassificationAlgorithm.getSegmentationImageDataAnnotation() |
boolean |
IlastikAutoContextAlgorithm.isCleanUpAfterwards() |
boolean |
IlastikPredictionMapsObjectClassificationAlgorithm.isCleanUpAfterwards() |
boolean |
IlastikSegmentationImageObjectClassificationAlgorithm.isCleanUpAfterwards() |
boolean |
IlastikPixelClassificationAlgorithm.isCleanUpAfterwards() |
boolean |
IlastikObjectClassificationAlgorithm.isCleanUpAfterwards() |
boolean |
ImportIlastikModel.isLink() |
boolean |
IlastikPredictionMapsObjectClassificationAlgorithm.OutputParameters.isOutputBlockwiseObjectPredictions() |
boolean |
IlastikSegmentationImageObjectClassificationAlgorithm.OutputParameters.isOutputBlockwiseObjectPredictions() |
boolean |
IlastikObjectClassificationAlgorithm.OutputParameters.isOutputBlockwiseObjectPredictions() |
boolean |
IlastikPredictionMapsObjectClassificationAlgorithm.OutputParameters.isOutputBlockwiseObjectProbabilities() |
boolean |
IlastikSegmentationImageObjectClassificationAlgorithm.OutputParameters.isOutputBlockwiseObjectProbabilities() |
boolean |
IlastikObjectClassificationAlgorithm.OutputParameters.isOutputBlockwiseObjectProbabilities() |
boolean |
IlastikPredictionMapsObjectClassificationAlgorithm.OutputParameters.isOutputFeatures() |
boolean |
IlastikSegmentationImageObjectClassificationAlgorithm.OutputParameters.isOutputFeatures() |
boolean |
IlastikPixelClassificationAlgorithm.OutputParameters.isOutputFeatures() |
boolean |
IlastikObjectClassificationAlgorithm.OutputParameters.isOutputFeatures() |
boolean |
IlastikAutoContextAlgorithm.OutputParameters.isOutputFeaturesStage1() |
boolean |
IlastikAutoContextAlgorithm.OutputParameters.isOutputFeaturesStage2() |
boolean |
IlastikAutoContextAlgorithm.OutputParameters.isOutputInputStage1() |
boolean |
IlastikAutoContextAlgorithm.OutputParameters.isOutputInputStage2() |
boolean |
IlastikPixelClassificationAlgorithm.OutputParameters.isOutputLabels() |
boolean |
IlastikAutoContextAlgorithm.OutputParameters.isOutputLabelsStage1() |
boolean |
IlastikAutoContextAlgorithm.OutputParameters.isOutputLabelsStage2() |
boolean |
IlastikPredictionMapsObjectClassificationAlgorithm.OutputParameters.isOutputObjectPredictions() |
boolean |
IlastikSegmentationImageObjectClassificationAlgorithm.OutputParameters.isOutputObjectPredictions() |
boolean |
IlastikObjectClassificationAlgorithm.OutputParameters.isOutputObjectPredictions() |
boolean |
IlastikPredictionMapsObjectClassificationAlgorithm.OutputParameters.isOutputObjectProbabilities() |
boolean |
IlastikSegmentationImageObjectClassificationAlgorithm.OutputParameters.isOutputObjectProbabilities() |
boolean |
IlastikObjectClassificationAlgorithm.OutputParameters.isOutputObjectProbabilities() |
boolean |
IlastikPredictionMapsObjectClassificationAlgorithm.OutputParameters.isOutputPixelProbabilities() |
boolean |
IlastikSegmentationImageObjectClassificationAlgorithm.OutputParameters.isOutputPixelProbabilities() |
boolean |
IlastikObjectClassificationAlgorithm.OutputParameters.isOutputPixelProbabilities() |
boolean |
IlastikPixelClassificationAlgorithm.OutputParameters.isOutputProbabilities() |
boolean |
IlastikAutoContextAlgorithm.OutputParameters.isOutputProbabilitiesAllStages() |
boolean |
IlastikAutoContextAlgorithm.OutputParameters.isOutputProbabilitiesStage1() |
boolean |
IlastikAutoContextAlgorithm.OutputParameters.isOutputProbabilitiesStage2() |
boolean |
IlastikPixelClassificationAlgorithm.OutputParameters.isOutputSimpleSegmentation() |
boolean |
IlastikAutoContextAlgorithm.OutputParameters.isOutputSimpleSegmentationStage1() |
boolean |
IlastikAutoContextAlgorithm.OutputParameters.isOutputSimpleSegmentationStage2() |
boolean |
IlastikPixelClassificationAlgorithm.OutputParameters.isOutputUncertainty() |
boolean |
IlastikAutoContextAlgorithm.OutputParameters.isOutputUncertaintyStage1() |
boolean |
IlastikAutoContextAlgorithm.OutputParameters.isOutputUncertaintyStage2() |
| Modifier and Type | Method and Description |
|---|---|
OptionalIlastikEnvironment |
IlastikPluginApplicationSettings.getDefaultEnvironment() |
int |
IlastikPluginApplicationSettings.getMaxMemory() |
int |
IlastikPluginApplicationSettings.getMaxThreads() |
IlastikEnvironment.List |
IlastikPluginApplicationSettings.getPresets() |
OptionalIlastikEnvironment |
IlastikPluginProjectSettings.getProjectDefaultEnvironment() |
| Modifier and Type | Method and Description |
|---|---|
JIPipeDynamicParameterCollection |
ImageJ2OpNode.getModuleParameters() |
| Modifier and Type | Class and Description |
|---|---|
class |
CreateIJ2OutOfBoundsFactoryAlgorithm |
class |
CreateIJ2ShapeAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
ImageJ2OutOfBoundsFactoryData |
CreateIJ2OutOfBoundsFactoryAlgorithm.getFactoryData() |
JIPipeDataInfoRef |
CreateIJ2OutOfBoundsFactoryAlgorithm.getFactoryType() |
ImageJ2ShapeData |
CreateIJ2ShapeAlgorithm.getShapeData() |
JIPipeDataInfoRef |
CreateIJ2ShapeAlgorithm.getShapeType() |
| Modifier and Type | Class and Description |
|---|---|
class |
IJ2DataFromImageWindowImageJImporter |
class |
IJ2DataToImageWindowImageJExporter |
| Modifier and Type | Class and Description |
|---|---|
class |
ImageJ2DatasetData |
| Modifier and Type | Class and Description |
|---|---|
class |
BorderImageJ2OutOfBoundsFactoryData |
class |
EmptyImageJ2OutOfBoundsFactory |
class |
ImageJ2OutOfBoundsFactoryData |
class |
MirrorImageJ2OutOfBoundsFactoryData |
class |
PeriodicImageJ2OutOfBoundsFactoryData |
| Modifier and Type | Method and Description |
|---|---|
net.imglib2.outofbounds.OutOfBoundsMirrorFactory.Boundary |
MirrorImageJ2OutOfBoundsFactoryData.getBoundary() |
| Modifier and Type | Class and Description |
|---|---|
class |
ByteConstantValueImageJ2OutOfBoundsFactoryData |
class |
DoubleConstantValueImageJ2OutOfBoundsFactoryData |
class |
FloatConstantValueImageJ2OutOfBoundsFactoryData |
class |
IntegerConstantValueImageJ2OutOfBoundsFactoryData |
class |
LongConstantValueImageJ2OutOfBoundsFactoryData |
class |
ShortConstantValueImageJ2OutOfBoundsFactoryData |
| Modifier and Type | Method and Description |
|---|---|
long |
LongConstantValueImageJ2OutOfBoundsFactoryData.getValue() |
short |
ShortConstantValueImageJ2OutOfBoundsFactoryData.getValue() |
byte |
ByteConstantValueImageJ2OutOfBoundsFactoryData.getValue() |
int |
IntegerConstantValueImageJ2OutOfBoundsFactoryData.getValue() |
float |
FloatConstantValueImageJ2OutOfBoundsFactoryData.getValue() |
double |
DoubleConstantValueImageJ2OutOfBoundsFactoryData.getValue() |
| Modifier and Type | Class and Description |
|---|---|
class |
CenteredRectangleImageJ2ShapeData |
class |
DiamondImageJ2ShapeData |
class |
DiamondTipsImageJ2ShapeData |
class |
EmptyImageJ2ShapeData |
class |
HorizontalLineImageJ2ShapeData |
class |
HyperSphereImageJ2ShapeData |
class |
ImageJ2ShapeData |
class |
PairOfPointsImageJ2ShapeData |
class |
PeriodicLineImageJ2ShapeData |
class |
RectangleImageJ2ShapeData |
| Modifier and Type | Method and Description |
|---|---|
IntegerList |
PeriodicLineImageJ2ShapeData.getIncrements() |
int |
HorizontalLineImageJ2ShapeData.getLineDimension() |
LongList |
PairOfPointsImageJ2ShapeData.getOffset() |
long |
HyperSphereImageJ2ShapeData.getRadius() |
long |
DiamondTipsImageJ2ShapeData.getRadius() |
long |
DiamondImageJ2ShapeData.getRadius() |
IntegerList |
CenteredRectangleImageJ2ShapeData.getSpan() |
int |
RectangleImageJ2ShapeData.getSpan() |
long |
HorizontalLineImageJ2ShapeData.getSpan() |
long |
PeriodicLineImageJ2ShapeData.getSpan() |
boolean |
CenteredRectangleImageJ2ShapeData.isSkipCenter() |
boolean |
RectangleImageJ2ShapeData.isSkipCenter() |
boolean |
HorizontalLineImageJ2ShapeData.isSkipCenter() |
| Modifier and Type | Class and Description |
|---|---|
class |
MacroWrapperAlgorithm
An algorithm that wraps around an ImageJ macro
|
| Modifier and Type | Method and Description |
|---|---|
ImageJMacro |
MacroWrapperAlgorithm.getCode() |
int |
MacroWrapperAlgorithm.getExportDelay() |
int |
MacroWrapperAlgorithm.getImportDelay() |
InputSlotMapParameterCollection |
MacroWrapperAlgorithm.getInputToImageJExporters() |
JIPipeDynamicParameterCollection |
MacroWrapperAlgorithm.getMacroParameters() |
OutputSlotMapParameterCollection |
MacroWrapperAlgorithm.getOutputFromImageJImporters() |
| Modifier and Type | Class and Description |
|---|---|
class |
AnalyzeSkeleton2D3DAlgorithm |
class |
AnnotateByImageStatisticsExpressionAlgorithm
Wrapper around
RoiManager |
class |
FindParticles2D
Converts a mask to ROI and ROI measurements
|
class |
ImageStatisticsAlgorithm
Wrapper around
RoiManager |
class |
ImageStatisticsExpressionAlgorithm
Wrapper around
RoiManager |
class |
OrientationVectorField2DAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
ExpressionTableColumnGeneratorProcessorParameterList |
AnnotateByImageStatisticsExpressionAlgorithm.getAnnotations() |
OptionalStringParameter |
FindParticles2D.getAnnotationType() |
ExpressionTableColumnGeneratorProcessorParameterList |
ImageStatisticsExpressionAlgorithm.getColumns() |
int |
OrientationVectorField2DAlgorithm.getGridSize() |
OptionalStringParameter |
ImageStatisticsAlgorithm.getIndexAnnotation() |
double |
FindParticles2D.getMaxParticleCircularity() |
double |
FindParticles2D.getMaxParticleSize() |
ImageStatisticsSetParameter |
ImageStatisticsAlgorithm.getMeasurements() |
double |
FindParticles2D.getMinParticleCircularity() |
double |
FindParticles2D.getMinParticleSize() |
Neighborhood2D |
FindParticles2D.getNeighborhood() |
AnalyzeSkeleton2D3DAlgorithm.OutputParameters |
AnalyzeSkeleton2D3DAlgorithm.getOutputParameters() |
OrientationVectorField2DAlgorithm.OutputParameters |
OrientationVectorField2DAlgorithm.getOutputParameters() |
AnalyzeSkeleton2D3DAlgorithm.CycleRemovalMethod |
AnalyzeSkeleton2D3DAlgorithm.getPruneCyclesMethod() |
AnalyzeSkeleton2D3DAlgorithm.EndRemovalMethod |
AnalyzeSkeleton2D3DAlgorithm.getPruneEndsMethod() |
double |
OrientationVectorField2DAlgorithm.getScaleVectorPercentage() |
ImageStatisticsSetParameter |
FindParticles2D.getStatisticsParameters() |
OrientationJStructureTensorParameters |
OrientationVectorField2DAlgorithm.getStructureTensorParameters() |
ImageROITargetArea |
ImageStatisticsExpressionAlgorithm.getTargetArea() |
ImageROITargetArea |
AnnotateByImageStatisticsExpressionAlgorithm.getTargetArea() |
OrientationJVectorFieldType |
OrientationVectorField2DAlgorithm.getVectorFieldType() |
boolean |
ImageStatisticsExpressionAlgorithm.isApplyPerChannel() |
boolean |
ImageStatisticsAlgorithm.isApplyPerChannel() |
boolean |
ImageStatisticsExpressionAlgorithm.isApplyPerFrame() |
boolean |
ImageStatisticsAlgorithm.isApplyPerFrame() |
boolean |
ImageStatisticsExpressionAlgorithm.isApplyPerSlice() |
boolean |
ImageStatisticsAlgorithm.isApplyPerSlice() |
boolean |
FindParticles2D.isBlackBackground() |
boolean |
FindParticles2D.isCompositeROI() |
boolean |
FindParticles2D.isExcludeEdges() |
boolean |
FindParticles2D.isIncludeHoles() |
boolean |
ImageStatisticsAlgorithm.isMeasureInPhysicalUnits() |
boolean |
FindParticles2D.isMeasureInPhysicalUnits() |
boolean |
AnalyzeSkeleton2D3DAlgorithm.OutputParameters.isOutputBranchTable() |
boolean |
OrientationVectorField2DAlgorithm.OutputParameters.isOutputCoherency() |
boolean |
OrientationVectorField2DAlgorithm.OutputParameters.isOutputEnergy() |
boolean |
AnalyzeSkeleton2D3DAlgorithm.OutputParameters.isOutputLargestShortestPaths() |
boolean |
OrientationVectorField2DAlgorithm.OutputParameters.isOutputOrientation() |
boolean |
AnalyzeSkeleton2D3DAlgorithm.OutputParameters.isOutputSkeletonLabels() |
boolean |
AnalyzeSkeleton2D3DAlgorithm.OutputParameters.isOutputSkeletonTable() |
boolean |
AnalyzeSkeleton2D3DAlgorithm.OutputParameters.isOutputTaggedSkeletons() |
boolean |
OrientationVectorField2DAlgorithm.isRadians() |
boolean |
FindParticles2D.isSplitSlices() |
| Modifier and Type | Class and Description |
|---|---|
class |
RollingBallBackgroundEstimator2DAlgorithm
Wrapper around
RankFilters |
| Modifier and Type | Method and Description |
|---|---|
RollingBallBackgroundEstimator2DAlgorithm.BackgroundType |
RollingBallBackgroundEstimator2DAlgorithm.getBackgroundType() |
RollingBallBackgroundEstimator2DAlgorithm.Method |
RollingBallBackgroundEstimator2DAlgorithm.getMethod() |
double |
RollingBallBackgroundEstimator2DAlgorithm.getRadius() |
boolean |
RollingBallBackgroundEstimator2DAlgorithm.isCorrectCorners() |
boolean |
RollingBallBackgroundEstimator2DAlgorithm.isPreSmoothing() |
boolean |
RollingBallBackgroundEstimator2DAlgorithm.isSeparateChannels() |
boolean |
RollingBallBackgroundEstimator2DAlgorithm.isSubtract() |
| Modifier and Type | Class and Description |
|---|---|
class |
BinarizeAlgorithm |
class |
BitwiseLogicalOperationAlgorithm |
class |
ConditionalInverterAlgorithm |
class |
ConnectedComponentsLabeling2DAlgorithm |
class |
ConnectedComponentsLabeling3DAlgorithm |
class |
ConvexifyAlgorithm |
class |
DistanceTransformWatershed2DAlgorithm
Wrapper around
EDM |
class |
KeepLargestRegionAlgorithm |
class |
RemoveLargestRegionAlgorithm |
class |
UltimateErodedPoints2DAlgorithm
Wrapper around
EDM |
class |
VolumeOpening2DAlgorithm |
class |
VolumeOpening3DAlgorithm |
class |
Voronoi2DAlgorithm
Wrapper around
EDM |
| Modifier and Type | Method and Description |
|---|---|
JIPipeExpressionParameter |
ConditionalInverterAlgorithm.getCondition() |
Neighborhood2D |
ConnectedComponentsLabeling2DAlgorithm.getConnectivity() |
Neighborhood3D |
ConnectedComponentsLabeling3DAlgorithm.getConnectivity() |
int |
RemoveLargestRegionAlgorithm.getIterations() |
LogicalOperation |
BitwiseLogicalOperationAlgorithm.getLogicalOperation() |
int |
VolumeOpening3DAlgorithm.getMinPixels() |
int |
VolumeOpening2DAlgorithm.getMinPixels() |
JIPipeDataInfoRef |
ConnectedComponentsLabeling2DAlgorithm.getOutputType() |
JIPipeDataInfoRef |
ConnectedComponentsLabeling3DAlgorithm.getOutputType() |
boolean |
ConditionalInverterAlgorithm.isApplyPerSlice() |
boolean |
Voronoi2DAlgorithm.isBinarize() |
boolean |
BinarizeAlgorithm.isInvert() |
| Modifier and Type | Class and Description |
|---|---|
class |
BoxFilter2DAlgorithm
Wrapper around
ImageProcessor |
class |
BoxFilter3DAlgorithm
Wrapper around
GaussianBlur |
class |
GaussianBlur2DAlgorithm
Wrapper around
GaussianBlur |
class |
GaussianBlur3DAlgorithm
Wrapper around
GaussianBlur |
class |
MedianBlurFilter2DAlgorithm
Wrapper around
RankFilters |
class |
MedianBlurFilter3DAlgorithm
Wrapper around
GaussianBlur |
class |
MedianBlurGreyscale8U2DAlgorithm
Wrapper around
ImageProcessor |
class |
MedianBlurRGB2DAlgorithm
Wrapper around
ImageProcessor |
| Modifier and Type | Method and Description |
|---|---|
double |
MedianBlurFilter2DAlgorithm.getRadius() |
float |
BoxFilter3DAlgorithm.getRadiusX() |
float |
MedianBlurFilter3DAlgorithm.getRadiusX() |
float |
BoxFilter3DAlgorithm.getRadiusY() |
float |
MedianBlurFilter3DAlgorithm.getRadiusY() |
float |
BoxFilter3DAlgorithm.getRadiusZ() |
float |
MedianBlurFilter3DAlgorithm.getRadiusZ() |
double |
GaussianBlur3DAlgorithm.getSigmaX() |
double |
GaussianBlur2DAlgorithm.getSigmaX() |
double |
GaussianBlur3DAlgorithm.getSigmaY() |
double |
GaussianBlur2DAlgorithm.getSigmaY() |
double |
GaussianBlur3DAlgorithm.getSigmaZ() |
| Modifier and Type | Class and Description |
|---|---|
class |
CopyPhysicalDimensionsBetweenImagesAlgorithm |
class |
DrawScaleBarAlgorithm |
class |
SetPhysicalDimensionsAlgorithm |
class |
SetPhysicalDimensionsByAnnotationsAlgorithm |
class |
SetPhysicalDimensionsByExpressionsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
Coloc2Node |
| Modifier and Type | Method and Description |
|---|---|
String |
Coloc2Node.getChannel1Name() |
String |
Coloc2Node.getChannel2Name() |
int |
Coloc2Node.Settings.getCostesRandomizations() |
OptionalTextAnnotationNameParameter |
Coloc2Node.getHistogramNameAnnotation() |
OptionalTextAnnotationNameParameter |
Coloc2Node.getPlotNameAnnotation() |
int |
Coloc2Node.Settings.getPsf() |
Coloc2Node.Settings |
Coloc2Node.getSettings() |
sc.fiji.coloc.algorithms.AutoThresholdRegression.Implementation |
Coloc2Node.Settings.getThresholdRegression() |
boolean |
Coloc2Node.Settings.isCostesSignificanceTest() |
boolean |
Coloc2Node.isInputMasks() |
boolean |
Coloc2Node.Settings.isIntensityHistogram2D() |
boolean |
Coloc2Node.Settings.isKendallTauRankCorrelation() |
boolean |
Coloc2Node.Settings.isLiHistogramChannel1() |
boolean |
Coloc2Node.Settings.isLiHistogramChannel2() |
boolean |
Coloc2Node.Settings.isLiICQ() |
boolean |
Coloc2Node.Settings.isMandersCorrelation() |
boolean |
Coloc2Node.isOutputWarnings() |
boolean |
Coloc2Node.Settings.isSpearmanRankCorrelation() |
| Modifier and Type | Class and Description |
|---|---|
class |
ArrangeChannelsAlgorithm
Wrapper around
ChannelArranger |
class |
BlendImagesAlgorithm |
class |
ColorToGreyscaleExpression2D |
class |
CombineChannelsToRGBAlgorithm |
class |
InvertColorsAlgorithm
Wrapper around
ImageProcessor |
class |
MergeChannelsAlgorithm
Wrapper around
ImageProcessor |
class |
MergeHSBChannelsAlgorithm |
class |
MergeLABChannelsAlgorithm |
class |
MergeRGBChannelsAlgorithm |
class |
NewSplitChannelsAlgorithm
Wrapper around
ChannelSplitter |
class |
OverlayImagesAlgorithm
Deprecated.
Use
BlendImagesAlgorithm instead |
class |
RenderImageToRGBAlgorithm |
class |
SplitChannelsAlgorithm
Deprecated.
|
class |
SplitChannelsByTableAlgorithm
Wrapper around
ChannelSplitter |
class |
SplitRGBChannelsAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
String |
SplitChannelsAlgorithm.getAnnotationColumnChannelIndex()
Deprecated.
|
JIPipeExpressionParameter |
SplitChannelsByTableAlgorithm.getAnnotationColumnFilter() |
String |
SplitChannelsAlgorithm.getAnnotationColumnSlotName()
Deprecated.
|
InputSlotMapParameterCollection |
MergeChannelsAlgorithm.getChannelColorAssignment() |
InputSlotMapParameterCollection |
OverlayImagesAlgorithm.getChannelColorAssignment()
Deprecated.
|
JIPipeExpressionParameter |
SplitChannelsByTableAlgorithm.getChannelColumnFilter() |
OptionalTextAnnotationNameParameter |
NewSplitChannelsAlgorithm.getChannelIndexAnnotation() |
OptionalTextAnnotationNameParameter |
SplitChannelsByTableAlgorithm.getChannelIndexAnnotation() |
OptionalTextAnnotationNameParameter |
NewSplitChannelsAlgorithm.getChannelNameAnnotation() |
OptionalTextAnnotationNameParameter |
SplitChannelsByTableAlgorithm.getChannelNameAnnotation() |
IntegerAndIntegerPairParameter.List |
ArrangeChannelsAlgorithm.getChannelReordering() |
OutputSlotMapParameterCollection |
NewSplitChannelsAlgorithm.getChannelToSlotAssignment() |
OutputSlotMapParameterCollection |
SplitChannelsAlgorithm.getChannelToSlotAssignment()
Deprecated.
|
Color |
OverlayImagesAlgorithm.Channel.getColor() |
JIPipeExpressionParameter |
ColorToGreyscaleExpression2D.getExpression() |
InputSlotMapParameterCollection |
BlendImagesAlgorithm.getLayers() |
double |
OverlayImagesAlgorithm.Channel.getOpacity() |
JIPipeDataInfoRef |
ColorToGreyscaleExpression2D.getOutputType() |
boolean |
SplitChannelsAlgorithm.isAnnotateWithChannelIndex()
Deprecated.
|
boolean |
SplitChannelsAlgorithm.isAnnotateWithSlotName()
Deprecated.
|
boolean |
OverlayImagesAlgorithm.Channel.isBlackToAlpha() |
boolean |
MergeChannelsAlgorithm.isCreateComposite() |
boolean |
SplitChannelsByTableAlgorithm.isIgnoreAnnotationColumnsOnTrivialMatch() |
boolean |
NewSplitChannelsAlgorithm.isIgnoreMissingChannels() |
boolean |
SplitChannelsAlgorithm.isIgnoreMissingChannels()
Deprecated.
|
boolean |
SplitChannelsByTableAlgorithm.isIgnoreMissingChannels() |
boolean |
SplitChannelsByTableAlgorithm.isIgnoreMissingImages() |
boolean |
SplitChannelsByTableAlgorithm.isIgnoreMissingOutputs() |
boolean |
ArrangeChannelsAlgorithm.isKeepSameChannelCount() |
boolean |
BlendImagesAlgorithm.isRenderGreyscaleImages() |
void |
ArrangeChannelsAlgorithm.setToExample(JIPipeWorkbench parent) |
| Modifier and Type | Class and Description |
|---|---|
class |
CLAHEContrastEnhancer
Applies CLAHE image enhancing
|
class |
HistogramContrastEnhancerAlgorithm
This class is based on
ContrastEnhancer
This class is not very portable, so I adapted the code here |
class |
IlluminationCorrection2DAlgorithm
Applies illumination correction
|
class |
ImageJContrastEnhancerAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
int |
CLAHEContrastEnhancer.getBins() |
int |
CLAHEContrastEnhancer.getBlockRadius() |
ImageJCalibrationMode |
ImageJContrastEnhancerAlgorithm.getCalibrationMode() |
Vector2dParameter |
ImageJContrastEnhancerAlgorithm.getCustomRange() |
GaussianBlur2DAlgorithm |
IlluminationCorrection2DAlgorithm.getGaussianAlgorithm() |
float |
CLAHEContrastEnhancer.getMaxSlope() |
HistogramContrastEnhancerAlgorithm.Method |
HistogramContrastEnhancerAlgorithm.getMethod() |
double |
HistogramContrastEnhancerAlgorithm.getSaturatedPixels() |
boolean |
CLAHEContrastEnhancer.isFastMode() |
boolean |
ImageJContrastEnhancerAlgorithm.isStretchHistogram() |
boolean |
HistogramContrastEnhancerAlgorithm.isUseStackHistogram() |
| Modifier and Type | Class and Description |
|---|---|
class |
ConvertImageAlgorithm |
class |
ConvertImageTo16BitAlgorithm |
class |
ConvertImageTo16BitAutoContrastAlgorithm |
class |
ConvertImageTo32BitAlgorithm |
class |
ConvertImageTo8BitAlgorithm |
class |
ConvertImageTo8BitAutoContrastAlgorithm |
class |
ConvertImageToHSBAlgorithm |
class |
ConvertImageToLABAlgorithm |
class |
ConvertImageToRGBAlgorithm |
class |
ImageToMatrixAlgorithm
Algorithm that generates
ResultsTableData as histogram |
class |
ImageToTableAlgorithm
Algorithm that generates
ResultsTableData as histogram |
class |
ImageToTableColumnAlgorithm |
class |
MatrixToImageAlgorithm |
class |
MultipleImagesToTableAlgorithm
Algorithm that generates
ResultsTableData as histogram |
class |
TableColumnToImageAlgorithm |
class |
TableToImageAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
ImageJCalibrationMode |
ConvertImageTo8BitAutoContrastAlgorithm.getCalibrationMode() |
ImageJCalibrationMode |
ConvertImageTo16BitAutoContrastAlgorithm.getCalibrationMode() |
JIPipeDynamicParameterCollection |
TableToImageAlgorithm.getColumnAssignment() |
OptionalIntegerParameter |
TableToImageAlgorithm.getCustomHeight() |
Vector2dParameter |
ConvertImageTo8BitAutoContrastAlgorithm.getCustomRange() |
Vector2dParameter |
ConvertImageTo16BitAutoContrastAlgorithm.getCustomRange() |
OptionalIntegerParameter |
TableToImageAlgorithm.getCustomSizeC() |
OptionalIntegerParameter |
TableToImageAlgorithm.getCustomSizeT() |
OptionalIntegerParameter |
TableToImageAlgorithm.getCustomSizeZ() |
OptionalIntegerParameter |
TableToImageAlgorithm.getCustomWidth() |
JIPipeDataInfoRef |
ConvertImageAlgorithm.getGeneratedImageType() |
JIPipeDataInfoRef |
TableToImageAlgorithm.getOutputImageType() |
JIPipeDataInfoRef |
MatrixToImageAlgorithm.getOutputImageType() |
TableColumnSourceExpressionParameter |
TableColumnToImageAlgorithm.getSelectedColumn() |
String |
MultipleImagesToTableAlgorithm.getSliceAnnotation() |
String |
ImageToTableAlgorithm.getSliceAnnotation() |
String |
ImageToTableColumnAlgorithm.getTargetColumnName() |
boolean |
MultipleImagesToTableAlgorithm.isApplyPerSlice() |
boolean |
ImageToTableAlgorithm.isApplyPerSlice() |
boolean |
ConvertImageTo8BitAutoContrastAlgorithm.isStretchHistogram() |
boolean |
ConvertImageTo16BitAutoContrastAlgorithm.isStretchHistogram() |
| Modifier and Type | Class and Description |
|---|---|
class |
ConvolveByImage2DAlgorithm
Wrapper around
Convolver |
class |
ConvolveByParameter2DAlgorithm
Wrapper around
Convolver |
| Modifier and Type | Method and Description |
|---|---|
Matrix2DFloat |
ConvolveByParameter2DAlgorithm.getMatrix() |
boolean |
ConvolveByParameter2DAlgorithm.isNormalize() |
boolean |
ConvolveByImage2DAlgorithm.isNormalize() |
| Modifier and Type | Class and Description |
|---|---|
class |
ImageStackFromFolder
Loads an image data from a file via IJ.openFile()
|
class |
OMEImageFromImagePlus |
| Modifier and Type | Method and Description |
|---|---|
OMEExporterSettings |
OMEImageFromImagePlus.getExporterSettings() |
PathQueryExpression |
ImageStackFromFolder.getFilterExpression() |
JIPipeDataInfoRef |
ImageStackFromFolder.getGeneratedImageType() |
HyperstackDimension |
ImageStackFromFolder.getOutputDimension() |
IntegerRange |
ImageStackFromFolder.getSlicesToImport() |
boolean |
ImageStackFromFolder.isForceNativeImport() |
boolean |
ImageStackFromFolder.isIgnoreInvalidSlices() |
boolean |
ImageStackFromFolder.isRemoveLut() |
boolean |
ImageStackFromFolder.isSortFilesNumerically() |
| Modifier and Type | Class and Description |
|---|---|
class |
CircularHoughSegmentation2DAlgorithm
Segments using a Hough circle transform
|
class |
CornerHarris2DAlgorithm |
class |
FastCircularHoughSegmentation2DAlgorithm
Segments using a Hough circle transform
This code is based on ...
|
class |
GlobalLinesHoughDetection2DAlgorithm |
class |
LineSegmentsHoughDetection2DAlgorithm |
class |
LinesHoughDetection2DAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
int |
LinesHoughDetection2DAlgorithm.getAccumulatorThreshold() |
int |
CircularHoughSegmentation2DAlgorithm.getBandwidth() |
double |
LineSegmentsHoughDetection2DAlgorithm.getFillGap() |
double |
CornerHarris2DAlgorithm.getHarrisK() |
int |
CornerHarris2DAlgorithm.getHarrisL() |
OptionalJIPipeExpressionParameter |
GlobalLinesHoughDetection2DAlgorithm.getHoughArrayNMSNeighborhoodSize() |
OptionalJIPipeExpressionParameter |
LineSegmentsHoughDetection2DAlgorithm.getHoughArrayNMSNeighborhoodSize() |
int |
GlobalLinesHoughDetection2DAlgorithm.getInputNMSNeighborhoodSize() |
int |
LineSegmentsHoughDetection2DAlgorithm.getInputNMSNeighborhoodSize() |
int |
CircularHoughSegmentation2DAlgorithm.getLocalRadius() |
int |
CircularHoughSegmentation2DAlgorithm.getMaxNumCircles() |
int |
FastCircularHoughSegmentation2DAlgorithm.getMaxRadius() |
int |
CircularHoughSegmentation2DAlgorithm.getMaxRadius() |
int |
LinesHoughDetection2DAlgorithm.getMaxTheta() |
double |
GlobalLinesHoughDetection2DAlgorithm.getMinLength() |
double |
LineSegmentsHoughDetection2DAlgorithm.getMinLength() |
double |
CornerHarris2DAlgorithm.getMinLevel() |
int |
CircularHoughSegmentation2DAlgorithm.getMinNumCircles() |
int |
FastCircularHoughSegmentation2DAlgorithm.getMinRadius() |
int |
CircularHoughSegmentation2DAlgorithm.getMinRadius() |
double |
FastCircularHoughSegmentation2DAlgorithm.getMinScore() |
int |
LinesHoughDetection2DAlgorithm.getNeighborhoodSize() |
HoughLinesNMSAlgorithm |
GlobalLinesHoughDetection2DAlgorithm.getNmsAlgorithm() |
HoughLinesNMSAlgorithm |
LineSegmentsHoughDetection2DAlgorithm.getNmsAlgorithm() |
int |
GlobalLinesHoughDetection2DAlgorithm.getNumPeaks() |
int |
LineSegmentsHoughDetection2DAlgorithm.getNumPeaks() |
CornerHarris2DAlgorithm.OutputParameters |
CornerHarris2DAlgorithm.getOutputParameters() |
JIPipeExpressionParameter |
GlobalLinesHoughDetection2DAlgorithm.getPeakThreshold() |
JIPipeExpressionParameter |
LineSegmentsHoughDetection2DAlgorithm.getPeakThreshold() |
OptionalFloatParameter |
LinesHoughDetection2DAlgorithm.getPixelThreshold() |
int |
CircularHoughSegmentation2DAlgorithm.getRadiusIncrement() |
double |
CircularHoughSegmentation2DAlgorithm.getRatio() |
int |
CircularHoughSegmentation2DAlgorithm.getResolution() |
JIPipeExpressionParameter |
LinesHoughDetection2DAlgorithm.getRoiNameExpression() |
JIPipeExpressionParameter |
GlobalLinesHoughDetection2DAlgorithm.getRoiNameExpression() |
JIPipeExpressionParameter |
LineSegmentsHoughDetection2DAlgorithm.getRoiNameExpression() |
OptionalIntegerParameter |
LinesHoughDetection2DAlgorithm.getSelectTopN() |
OrientationJStructureTensorParameters |
CornerHarris2DAlgorithm.getStructureTensorParameters() |
JIPipeExpressionParameter |
GlobalLinesHoughDetection2DAlgorithm.getThetas() |
JIPipeExpressionParameter |
LineSegmentsHoughDetection2DAlgorithm.getThetas() |
double |
CircularHoughSegmentation2DAlgorithm.getThreshold() |
boolean |
LineSegmentsHoughDetection2DAlgorithm.isFastSegmentDetection() |
boolean |
CircularHoughSegmentation2DAlgorithm.isLocal() |
boolean |
CornerHarris2DAlgorithm.OutputParameters.isOutputCoherency() |
boolean |
CornerHarris2DAlgorithm.OutputParameters.isOutputEnergy() |
boolean |
CornerHarris2DAlgorithm.OutputParameters.isOutputHarrisIndex() |
boolean |
CornerHarris2DAlgorithm.OutputParameters.isOutputOrientation() |
boolean |
CornerHarris2DAlgorithm.isRadians() |
| Modifier and Type | Class and Description |
|---|---|
class |
CreateStackAlgorithm |
class |
ExpressionSlicerAlgorithm |
class |
HyperstackSlicerAlgorithm |
class |
Merge2DToHyperstackAlgorithm |
class |
NewZProjectorAlgorithm
Wrapper around
ZProjector |
class |
ReorderDimensionsAlgorithm
Algorithm that reorders Hyperstack dimensions
|
class |
ReorderHyperstackSlicesExpressionAlgorithm |
class |
ResliceAlgorithm |
class |
SplitByDimensionAlgorithm |
class |
StackCombinerAlgorithm |
class |
StackInverterAlgorithm
Wrapper around
ImageProcessor |
class |
StackSplitterAlgorithm
Wrapper around
ChannelArranger |
class |
StackTo2DAlgorithm
Wrapper around
ImageProcessor |
class |
StackToDimensionMerger2Algorithm
Wrapper around
ImageProcessor |
class |
StackToDimensionMergerAlgorithm
Wrapper around
ImageProcessor |
class |
ZProjectorAlgorithm
Wrapper around
ZProjector |
| Modifier and Type | Class and Description |
|---|---|
class |
CannyEdgeDetectorAlgorithm
This is the JIPipe version of the ImageJ plugin ...
|
class |
LaplacianEdgeDetectorAlgorithm
Wrapper around
ImageProcessor |
class |
SobelEdgeDetectorAlgorithm
Wrapper around
ImageProcessor |
| Modifier and Type | Method and Description |
|---|---|
float |
CannyEdgeDetectorAlgorithm.getGaussianKernelRadius() |
int |
CannyEdgeDetectorAlgorithm.getGaussianKernelWidth() |
double |
CannyEdgeDetectorAlgorithm.getHighThreshold() |
double |
CannyEdgeDetectorAlgorithm.getLowThreshold() |
LaplacianEdgeDetectorAlgorithm.Mode |
LaplacianEdgeDetectorAlgorithm.getMode() |
boolean |
CannyEdgeDetectorAlgorithm.isNormalizeContrast() |
boolean |
LaplacianEdgeDetectorAlgorithm.isRemoveNegativeValues() |
| Modifier and Type | Class and Description |
|---|---|
class |
AlternatingMorphologicalFilters2DAlgorithm |
class |
DerivativesFeaturesAlgorithm |
class |
DifferenceOfGaussian2DAlgorithm
Wrapper around
GaussianBlur |
class |
DirectionalFilter2DAlgorithm |
class |
FrangiVesselnessFeatures
Applies CLAHE image enhancing
|
class |
HessianFeatureAlgorithm |
class |
LaplacianOfGaussian2DAlgorithm
Based on code by Dimiter Prodanov
...
|
class |
LocalMaxima2DAlgorithm
Wrapper around
MaximumFinder |
class |
MeijeringVesselness2DFeatures
Applies CLAHE image enhancing
|
class |
MorphologicalFeatureContrast2DAlgorithm |
class |
MorphologicalTextureContrast2DAlgorithm |
class |
OrientationFeatures2DAlgorithm |
class |
StructureFeatureAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
double |
MeijeringVesselness2DFeatures.getAlpha() |
double |
LocalMaxima2DAlgorithm.getHeightTolerance() |
double |
StructureFeatureAlgorithm.getIntegrationScale() |
int |
DirectionalFilter2DAlgorithm.getLineLength() |
double |
FrangiVesselnessFeatures.getMaximumScale() |
double |
FrangiVesselnessFeatures.getMinimumScale() |
MorphologicalFeatureContrast2DAlgorithm.Mode |
MorphologicalFeatureContrast2DAlgorithm.getMode() |
int |
DirectionalFilter2DAlgorithm.getnDirections() |
int |
FrangiVesselnessFeatures.getNumScales() |
inra.ijpb.morphology.directional.DirectionalFilter.Operation |
DirectionalFilter2DAlgorithm.getOperation() |
OrientationFeatures2DAlgorithm.OutputParameters |
OrientationFeatures2DAlgorithm.getOutputParameters() |
LocalMaxima2DAlgorithm.OutputType |
LocalMaxima2DAlgorithm.getOutputType() |
int |
LaplacianOfGaussian2DAlgorithm.getRadius() |
int |
AlternatingMorphologicalFilters2DAlgorithm.getRadius1() |
int |
MorphologicalFeatureContrast2DAlgorithm.getRadius1() |
int |
MorphologicalTextureContrast2DAlgorithm.getRadius1() |
int |
AlternatingMorphologicalFilters2DAlgorithm.getRadius2() |
int |
MorphologicalFeatureContrast2DAlgorithm.getRadius2() |
int |
MorphologicalTextureContrast2DAlgorithm.getRadius2() |
DoubleList |
MeijeringVesselness2DFeatures.getScales() |
double |
DifferenceOfGaussian2DAlgorithm.getSigma0X() |
double |
DifferenceOfGaussian2DAlgorithm.getSigma0Y() |
double |
DifferenceOfGaussian2DAlgorithm.getSigma1X() |
double |
DifferenceOfGaussian2DAlgorithm.getSigma1Y() |
FrangiVesselnessFeatures.SlicingMode |
FrangiVesselnessFeatures.getSlicingMode() |
double |
HessianFeatureAlgorithm.getSmoothing() |
double |
StructureFeatureAlgorithm.getSmoothing() |
double |
DerivativesFeaturesAlgorithm.getSmoothingScale() |
inra.ijpb.morphology.Strel.Shape |
AlternatingMorphologicalFilters2DAlgorithm.getStructureElement() |
inra.ijpb.morphology.Strel.Shape |
MorphologicalFeatureContrast2DAlgorithm.getStructureElement() |
inra.ijpb.morphology.Strel.Shape |
MorphologicalTextureContrast2DAlgorithm.getStructureElement() |
OrientationJStructureTensorParameters |
OrientationFeatures2DAlgorithm.getStructureTensorParameters() |
double |
LocalMaxima2DAlgorithm.getThreshold() |
inra.ijpb.morphology.directional.DirectionalFilter.Type |
DirectionalFilter2DAlgorithm.getType() |
int |
DerivativesFeaturesAlgorithm.getxOrder() |
int |
DerivativesFeaturesAlgorithm.getyOrder() |
int |
DerivativesFeaturesAlgorithm.getzOrder() |
boolean |
HessianFeatureAlgorithm.isCompareAbsolute() |
boolean |
LocalMaxima2DAlgorithm.isExcludeOnEdges() |
boolean |
HessianFeatureAlgorithm.isForce2D() |
boolean |
DerivativesFeaturesAlgorithm.isForce2D() |
boolean |
StructureFeatureAlgorithm.isForce2D() |
boolean |
LocalMaxima2DAlgorithm.isInputIsEDM() |
boolean |
FrangiVesselnessFeatures.isInvert() |
boolean |
MeijeringVesselness2DFeatures.isInvert() |
boolean |
HessianFeatureAlgorithm.isIsotropicGaussian() |
boolean |
DerivativesFeaturesAlgorithm.isIsotropicGaussian() |
boolean |
StructureFeatureAlgorithm.isIsotropicGaussian() |
boolean |
OrientationFeatures2DAlgorithm.OutputParameters.isOutputCoherency() |
boolean |
OrientationFeatures2DAlgorithm.OutputParameters.isOutputEnergy() |
boolean |
OrientationFeatures2DAlgorithm.OutputParameters.isOutputGradientX() |
boolean |
OrientationFeatures2DAlgorithm.OutputParameters.isOutputGradientY() |
boolean |
OrientationFeatures2DAlgorithm.OutputParameters.isOutputOrientation() |
boolean |
OrientationFeatures2DAlgorithm.isRadians() |
boolean |
LocalMaxima2DAlgorithm.isStrict() |
| Modifier and Type | Class and Description |
|---|---|
class |
FFT2DForwardTransform
Applies a FFT forward transformation
|
class |
FFT2DInverseTransform
Applies a FFT forward transformation
|
class |
FFT2DSwapQuadrants
Applies a FFT forward transformation
|
class |
FFTBandPassFilter |
class |
FFTCustomFilter |
| Modifier and Type | Method and Description |
|---|---|
double |
FFTBandPassFilter.getFilterLargeDiameter() |
double |
FFTBandPassFilter.getFilterSmallDiameter() |
FFTBandPassFilter.SuppressStripesMode |
FFTBandPassFilter.getSuppressStripesMode() |
double |
FFTBandPassFilter.getToleranceOfDirectionPercentage() |
boolean |
FFTBandPassFilter.isDoScaling() |
boolean |
FFTBandPassFilter.isSaturate() |
| Modifier and Type | Class and Description |
|---|---|
class |
DrawMaskAlgorithm |
class |
DrawROIAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
OptionalIntegerParameter |
DrawMaskAlgorithm.getOverwriteSizeC() |
OptionalIntegerParameter |
DrawROIAlgorithm.getOverwriteSizeC() |
OptionalIntegerParameter |
DrawMaskAlgorithm.getOverwriteSizeT() |
OptionalIntegerParameter |
DrawROIAlgorithm.getOverwriteSizeT() |
OptionalIntegerParameter |
DrawMaskAlgorithm.getOverwriteSizeZ() |
OptionalIntegerParameter |
DrawROIAlgorithm.getOverwriteSizeZ() |
| Modifier and Type | Class and Description |
|---|---|
class |
GenerateLUTImageFromColorMap
Wrapper around
ImageProcessor |
class |
GenerateMissingImageFromMathExpression2D
Wrapper around
ImageProcessor |
class |
GenerateMissingTablesAlgorithm
Deprecated.
|
class |
GenerateMissingTablesAlgorithm2 |
class |
GenerateMissingZeroImage
Wrapper around
ImageProcessor |
class |
GenerateStructureElement2DAlgorithm
Wrapper around
ImageProcessor |
class |
GenerateStructureElement3DAlgorithm
Wrapper around
ImageProcessor |
class |
GenerateZeroImage
Wrapper around
ImageProcessor |
class |
ImageFromMatrix2DAlgorithm
Wrapper around
Convolver |
| Modifier and Type | Method and Description |
|---|---|
ColorMap |
GenerateLUTImageFromColorMap.getColorMap() |
JIPipeDataInfoRef |
GenerateZeroImage.getDataType() |
inra.ijpb.morphology.Strel.Shape |
GenerateStructureElement2DAlgorithm.getElement() |
inra.ijpb.morphology.Strel3D.Shape |
GenerateStructureElement3DAlgorithm.getElement() |
JIPipeExpressionParameter |
GenerateMissingImageFromMathExpression2D.getFunction() |
int |
GenerateZeroImage.getHeight() |
int |
GenerateLUTImageFromColorMap.getHeight() |
Matrix2DFloat |
ImageFromMatrix2DAlgorithm.getMatrix() |
OptionalIntegerParameter |
GenerateMissingZeroImage.getOverwriteHeight() |
OptionalIntegerParameter |
GenerateMissingImageFromMathExpression2D.getOverwriteHeight() |
OptionalBitDepth |
GenerateMissingZeroImage.getOverwriteOutputBitDepth() |
OptionalBitDepth |
GenerateMissingImageFromMathExpression2D.getOverwriteOutputBitDepth() |
OptionalIntegerParameter |
GenerateMissingZeroImage.getOverwriteSizeC() |
OptionalIntegerParameter |
GenerateMissingImageFromMathExpression2D.getOverwriteSizeC() |
OptionalIntegerParameter |
GenerateMissingZeroImage.getOverwriteSizeT() |
OptionalIntegerParameter |
GenerateMissingImageFromMathExpression2D.getOverwriteSizeT() |
OptionalIntegerParameter |
GenerateMissingZeroImage.getOverwriteSizeZ() |
OptionalIntegerParameter |
GenerateMissingImageFromMathExpression2D.getOverwriteSizeZ() |
OptionalIntegerParameter |
GenerateMissingZeroImage.getOverwriteWidth() |
OptionalIntegerParameter |
GenerateMissingImageFromMathExpression2D.getOverwriteWidth() |
ResultsTableData |
GenerateMissingTablesAlgorithm.getPlaceholderTable()
Deprecated.
|
ResultsTableData |
GenerateMissingTablesAlgorithm2.getPlaceholderTable() |
int |
GenerateStructureElement2DAlgorithm.getRadius() |
int |
GenerateStructureElement3DAlgorithm.getRadius() |
int |
GenerateZeroImage.getSizeC() |
int |
GenerateZeroImage.getSizeT() |
int |
GenerateZeroImage.getSizeZ() |
int |
GenerateZeroImage.getWidth() |
int |
GenerateLUTImageFromColorMap.getWidth() |
boolean |
GenerateMissingZeroImage.isGenerateOnePerBatch() |
boolean |
GenerateMissingImageFromMathExpression2D.isGenerateOnePerBatch() |
| Modifier and Type | Class and Description |
|---|---|
class |
ExportImage2Algorithm |
class |
ExportImageAlgorithm
Deprecated.
|
class |
ExportImageDirectorySlotAlgorithm |
class |
ExportROIAlgorithm
Deprecated.
|
class |
ExportROIAlgorithm2 |
class |
ExportTableAlgorithm
Deprecated.
|
class |
ExportTableAlgorithm2 |
class |
ExportTableAsXLSXAlgorithm
Deprecated.
|
class |
ExportTableAsXLSXAlgorithm2 |
class |
ImagePlusFromGUI
Imports
ImagePlusData from the GUI |
class |
ImagePlusToGUI
Imports
ImagePlusData from the GUI |
class |
ResultsTableFromGUI
Imports
ImagePlusData from the GUI |
class |
ResultsTableToGUI
Imports
ImagePlusData from the GUI |
class |
ROIFromGUI
Imports
ImagePlusData from the GUI |
class |
ROIToGUI
Imports
ImagePlusData from the GUI |
class |
RunImageJExporterAlgorithm |
class |
RunImageJImporterAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
AVICompression |
ExportImageAlgorithm.getAviCompression()
Deprecated.
|
AVICompression |
ExportImageDirectorySlotAlgorithm.getAviCompression() |
AVICompression |
ExportImage2Algorithm.getAviCompression() |
JIPipeDataByMetadataExporter |
ExportROIAlgorithm.getExporter()
Deprecated.
|
JIPipeDataByMetadataExporter |
ExportImageAlgorithm.getExporter()
Deprecated.
|
JIPipeDataByMetadataExporter |
ExportTableAsXLSXAlgorithm.getExporter()
Deprecated.
|
JIPipeDataByMetadataExporter |
ExportTableAlgorithm.getExporter()
Deprecated.
|
JIPipeDataByMetadataExporter |
ExportImageDirectorySlotAlgorithm.getExporter() |
ImageJDataExporterRef |
RunImageJExporterAlgorithm.getExporterType() |
ImageJExportParameters |
RunImageJExporterAlgorithm.getExportParameters() |
ExportImageAlgorithm.FileFormat |
ExportImageAlgorithm.getFileFormat()
Deprecated.
|
ExportTableAlgorithm.FileFormat |
ExportTableAlgorithm2.getFileFormat() |
ExportTableAlgorithm.FileFormat |
ExportTableAlgorithm.getFileFormat()
Deprecated.
|
ExportImageAlgorithm.FileFormat |
ExportImageDirectorySlotAlgorithm.getFileFormat() |
ExportImageAlgorithm.FileFormat |
ExportImage2Algorithm.getFileFormat() |
DataExportExpressionParameter |
ExportTableAsXLSXAlgorithm2.getFilePath() |
DataExportExpressionParameter |
ExportTableAlgorithm2.getFilePath() |
DataExportExpressionParameter |
ExportROIAlgorithm2.getFilePath() |
DataExportExpressionParameter |
ExportImage2Algorithm.getFilePath() |
JIPipeExpressionParameter |
ImagePlusFromGUI.getImageFilters() |
LogicalOperation |
ImagePlusFromGUI.getImageFiltersOperation() |
ImageJDataImporterRef |
RunImageJImporterAlgorithm.getImporterType() |
ImageJImportParameters |
RunImageJImporterAlgorithm.getImportParameters() |
int |
ExportImageAlgorithm.getJpegQuality()
Deprecated.
|
int |
ExportImageDirectorySlotAlgorithm.getJpegQuality() |
int |
ExportImage2Algorithm.getJpegQuality() |
HyperstackDimension |
ExportImageAlgorithm.getMovieAnimatedDimension()
Deprecated.
|
HyperstackDimension |
ExportImageDirectorySlotAlgorithm.getMovieAnimatedDimension() |
HyperstackDimension |
ExportImage2Algorithm.getMovieAnimatedDimension() |
int |
ExportImageAlgorithm.getMovieFPS()
Deprecated.
|
int |
ExportImageDirectorySlotAlgorithm.getMovieFPS() |
int |
ExportImage2Algorithm.getMovieFPS() |
JIPipeExpressionParameter |
ExportTableAsXLSXAlgorithm2.getOrderExpression() |
JIPipeExpressionParameter |
ExportTableAsXLSXAlgorithm.getOrderExpression()
Deprecated.
|
Path |
ExportROIAlgorithm.getOutputDirectory()
Deprecated.
|
Path |
ExportImageAlgorithm.getOutputDirectory()
Deprecated.
|
Path |
ExportTableAsXLSXAlgorithm.getOutputDirectory()
Deprecated.
|
Path |
ExportTableAlgorithm.getOutputDirectory()
Deprecated.
|
JIPipeExpressionParameter |
ExportTableAsXLSXAlgorithm2.getSheetNameExpression() |
JIPipeExpressionParameter |
ExportTableAsXLSXAlgorithm.getSheetNameExpression()
Deprecated.
|
JIPipeExpressionParameter |
ResultsTableFromGUI.getTitleFilterExpression() |
boolean |
ExportROIAlgorithm.isExportAsROIFile()
Deprecated.
|
boolean |
ExportROIAlgorithm2.isExportAsROIFile() |
boolean |
ImagePlusFromGUI.isOnlyActiveImage() |
boolean |
ExportROIAlgorithm.isRelativeToProjectDir()
Deprecated.
|
boolean |
ExportImageAlgorithm.isRelativeToProjectDir()
Deprecated.
|
boolean |
ExportTableAsXLSXAlgorithm.isRelativeToProjectDir()
Deprecated.
|
boolean |
ExportTableAlgorithm.isRelativeToProjectDir()
Deprecated.
|
void |
RunImageJExporterAlgorithm.setExporterParametersFromUI(JIPipeWorkbench parent) |
void |
RunImageJImporterAlgorithm.setImporterParametersFromUI(JIPipeWorkbench parent) |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateWithOverlapMeasureLabelsAlgorithm |
class |
CropLabelsAlgorithm |
class |
DilateLabelsAlgorithm |
class |
ExpandLabelsAlgorithm |
class |
ExtractLabelStatisticsAlgorithm |
class |
GetLabelBoundariesAlgorithm |
class |
KeepLargestLabelAlgorithm |
class |
LabelsToMaskAlgorithm |
class |
LabelsToRGBAlgorithm |
class |
LabelsToROIAlgorithm |
class |
MergeLabelsAlgorithm |
class |
MergeLabelsToBinsAlgorithm |
class |
MergeLabelsToThicknessAlgorithm |
class |
MergeSmallLabelsAlgorithm |
class |
OverlapMeasureLabelsAlgorithm |
class |
RemapLabelsAlgorithm |
class |
ReplaceLabelsAlgorithm |
class |
ReplaceLabelsByTableAlgorithm |
class |
SeparateLabelsAlgorithm |
class |
SeparateTouchingLabels2DAlgorithm |
class |
SplitLabelsConnectedComponents2DAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
Color |
LabelsToRGBAlgorithm.getBackgroundColor() |
int |
CropLabelsAlgorithm.getBorder() |
inra.ijpb.color.ColorMaps.CommonLabelMaps |
LabelsToRGBAlgorithm.getColorMap() |
Neighborhood2D |
LabelsToROIAlgorithm.getConnectivity() |
Neighborhood2D |
SplitLabelsConnectedComponents2DAlgorithm.getConnectivity() |
OptionalTextAnnotationNameParameter |
AnnotateWithOverlapMeasureLabelsAlgorithm.getDiceCoefficientAnnotation() |
OptionalTextAnnotationNameParameter |
AnnotateWithOverlapMeasureLabelsAlgorithm.getFalseNegativeErrorAnnotation() |
OptionalTextAnnotationNameParameter |
AnnotateWithOverlapMeasureLabelsAlgorithm.getFalsePositiveErrorAnnotation() |
OptionalTextAnnotationNameParameter |
AnnotateWithOverlapMeasureLabelsAlgorithm.getJaccardIndexAnnotation() |
OptionalTextAnnotationNameParameter |
CropLabelsAlgorithm.getLabelIdAnnotation() |
OptionalIntegerRange |
CropLabelsAlgorithm.getLabelIdLimit() |
OptionalTextAnnotationNameParameter |
SeparateLabelsAlgorithm.getLabelIndexAnnotation() |
JIPipeExpressionParameter |
LabelsToROIAlgorithm.getLabelNameExpression() |
double |
DilateLabelsAlgorithm.getMaxRadius() |
OverlapStatisticsSetParameter |
OverlapMeasureLabelsAlgorithm.getMeasurements() |
ImageStatisticsSetParameter |
ExtractLabelStatisticsAlgorithm.getMeasurements() |
LabelsToROIAlgorithm.Method |
LabelsToROIAlgorithm.getMethod() |
int |
MergeSmallLabelsAlgorithm.getMinimumNumberOfPixels() |
int |
MergeLabelsToThicknessAlgorithm.getMinThickness() |
OptionalJIPipeExpressionParameter |
ReplaceLabelsByTableAlgorithm.getMissingValueReplacement() |
Neighborhood2D |
SeparateTouchingLabels2DAlgorithm.getNeighborhood() |
TableColumnSourceExpressionParameter |
ReplaceLabelsByTableAlgorithm.getNewLabelColumn() |
int |
MergeLabelsToBinsAlgorithm.getNumBins() |
TableColumnSourceExpressionParameter |
ReplaceLabelsByTableAlgorithm.getOldLabelColumn() |
float |
ExpandLabelsAlgorithm.getRatio() |
IntRangeAndIntegerPairParameter.List |
ReplaceLabelsAlgorithm.getReplacements() |
SortOrder |
MergeLabelsToThicknessAlgorithm.getSortOrder() |
SortOrder |
MergeLabelsToBinsAlgorithm.getSortOrder() |
ImageROITargetArea |
MergeLabelsToThicknessAlgorithm.getSourceArea() |
ImageROITargetArea |
MergeSmallLabelsAlgorithm.getSourceArea() |
OptionalTextAnnotationNameParameter |
AnnotateWithOverlapMeasureLabelsAlgorithm.getTotalOverlapAnnotation() |
OptionalTextAnnotationNameParameter |
AnnotateWithOverlapMeasureLabelsAlgorithm.getVolumeSimilarityAnnotation() |
boolean |
MergeLabelsToBinsAlgorithm.isEqualizeFrequencies() |
boolean |
MergeLabelsToThicknessAlgorithm.isExcludeZero() |
boolean |
MergeSmallLabelsAlgorithm.isExcludeZero() |
boolean |
MergeLabelsToBinsAlgorithm.isExcludeZero() |
boolean |
ReplaceLabelsByTableAlgorithm.isIgnoreZero() |
boolean |
ExtractLabelStatisticsAlgorithm.isMeasureInPhysicalUnits() |
boolean |
MergeSmallLabelsAlgorithm.isMergeToLargerLabel() |
boolean |
LabelsToRGBAlgorithm.isShuffleLut() |
| Modifier and Type | Class and Description |
|---|---|
class |
FilterLabelsByExpression2DAlgorithm |
class |
FilterLabelsByExpression3DAlgorithm |
class |
FilterLabelsByIdAlgorithm |
class |
FilterLabelsByMaskAlgorithm |
class |
FilterLabelsByOverlapAlgorithm |
class |
FilterLabelsByStatisticsAlgorithm
Wrapper around
RoiManager |
class |
FilterLabelsByThicknessAlgorithm |
class |
RemoveBorderLabelsAlgorithm |
class |
RemoveLargestLabelAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
float |
FilterLabelsByThicknessAlgorithm.getDeletedLabel() |
JIPipeExpressionParameter |
FilterLabelsByExpression2DAlgorithm.getExpression() |
JIPipeExpressionParameter |
FilterLabelsByExpression3DAlgorithm.getExpression() |
JIPipeExpressionParameter |
FilterLabelsByThicknessAlgorithm.getFilter() |
JIPipeExpressionParameter |
FilterLabelsByStatisticsAlgorithm.getFilters() |
int |
RemoveLargestLabelAlgorithm.getIterations() |
FilterLabelsByOverlapAlgorithm.LabelFilterSettings |
FilterLabelsByOverlapAlgorithm.getLabels1Settings() |
FilterLabelsByOverlapAlgorithm.LabelFilterSettings |
FilterLabelsByOverlapAlgorithm.getLabels2Settings() |
ImageStatisticsSetParameter |
FilterLabelsByStatisticsAlgorithm.getMeasurements() |
JIPipeExpressionParameter |
FilterLabelsByOverlapAlgorithm.LabelFilterSettings.getOverlapFilter() |
ImageStatisticsSetParameter |
FilterLabelsByOverlapAlgorithm.getOverlapFilterMeasurements() |
IntegerRange |
FilterLabelsByIdAlgorithm.getValues() |
boolean |
FilterLabelsByMaskAlgorithm.isDeleteMaskedLabels() |
boolean |
FilterLabelsByOverlapAlgorithm.LabelFilterSettings.isEnabled() |
boolean |
FilterLabelsByOverlapAlgorithm.LabelFilterSettings.isEnforceOverlap() |
boolean |
FilterLabelsByThicknessAlgorithm.isExcludeZero() |
boolean |
FilterLabelsByOverlapAlgorithm.LabelFilterSettings.isInvert() |
boolean |
FilterLabelsByIdAlgorithm.isKeepValues() |
boolean |
FilterLabelsByOverlapAlgorithm.LabelFilterSettings.isMeasureInPhysicalUnits() |
boolean |
FilterLabelsByStatisticsAlgorithm.isMeasureInPhysicalUnits() |
boolean |
FilterLabelsByOverlapAlgorithm.LabelFilterSettings.isOutputOverlaps() |
| Modifier and Type | Class and Description |
|---|---|
class |
ApplyLUTAlgorithm |
class |
LUTInverterAlgorithm |
class |
RemoveLUTAlgorithm |
class |
SetLUTFromColorMapAlgorithm |
class |
SetLUTFromColorsAlgorithm |
class |
SetLUTFromImageAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
ColorMap |
SetLUTFromColorMapAlgorithm.getColorMap() |
Color |
SetLUTFromColorsAlgorithm.getFirstColor() |
OptionalIntegerRange |
SetLUTFromColorsAlgorithm.getRestrictToChannels() |
OptionalIntegerRange |
SetLUTFromColorMapAlgorithm.getRestrictToChannels() |
OptionalIntegerRange |
SetLUTFromImageAlgorithm.getRestrictToChannels() |
OptionalIntegerRange |
RemoveLUTAlgorithm.getRestrictToChannels() |
Color |
SetLUTFromColorsAlgorithm.getSecondColor() |
boolean |
LUTInverterAlgorithm.isApplyToAllPlanes() |
boolean |
SetLUTFromColorsAlgorithm.isDuplicateImage() |
boolean |
SetLUTFromColorMapAlgorithm.isDuplicateImage() |
boolean |
LUTInverterAlgorithm.isDuplicateImage() |
boolean |
SetLUTFromImageAlgorithm.isDuplicateImage() |
boolean |
RemoveLUTAlgorithm.isDuplicateImage() |
| Modifier and Type | Class and Description |
|---|---|
class |
SetToColorAlgorithm |
class |
SetToContentAwareAlgorithm |
class |
SetToValueAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
Color |
SetToColorAlgorithm.getColor() |
SetToContentAwareAlgorithm.Method |
SetToContentAwareAlgorithm.getMethod() |
double |
SetToValueAlgorithm.getValue() |
| Modifier and Type | Class and Description |
|---|---|
class |
ApplyColorMathExpression2DExpression |
class |
ApplyMathExpression2DAlgorithm
Wrapper around
ImageProcessor |
class |
ApplyTransform2DAlgorithm
Wrapper around
ImageProcessor |
class |
ApplyVectorMathExpression2DAlgorithm
Wrapper around
ImageProcessor |
class |
DivideByMaximumAlgorithm
Wrapper around
ImageProcessor |
class |
FastImageArithmeticsAlgorithm |
class |
GenerateFromMathExpression2D
Wrapper around
ImageProcessor |
class |
GenerateVectorFromMathExpression
Wrapper around
ImageProcessor |
class |
Hessian2DAlgorithm
Deprecated.
|
class |
ImageCalculator2DExpression |
class |
ImageComparer2DAlgorithm
Deprecated.
|
class |
LegacyApplyMath2DAlgorithm
Deprecated.
|
class |
LegacyImageCalculator2DAlgorithm
Deprecated.
|
class |
LegacyImageCalculator2DMergingAlgorithm
Deprecated.
|
class |
RemoveNaNFilter2DAlgorithm
Wrapper around
RankFilters |
class |
RoundFloatImageAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
OptionalBitDepth |
FastImageArithmeticsAlgorithm.getBitDepth() |
HyperstackDimension |
ApplyVectorMathExpression2DAlgorithm.getComponentDimension() |
HyperstackDimension |
GenerateVectorFromMathExpression.getComponentDimension() |
int |
RoundFloatImageAlgorithm.getDecimals() |
EigenvalueSelection2D |
Hessian2DAlgorithm.getEigenvalueSelection2D()
Deprecated.
|
JIPipeExpressionParameter |
FastImageArithmeticsAlgorithm.getExpression() |
JIPipeExpressionParameter |
ImageCalculator2DExpression.getExpression() |
JIPipeExpressionParameter |
ApplyColorMathExpression2DExpression.getExpression() |
JIPipeExpressionParameter |
GenerateVectorFromMathExpression.getFunction() |
JIPipeExpressionParameter |
GenerateFromMathExpression2D.getFunction() |
int |
GenerateVectorFromMathExpression.getHeight() |
int |
GenerateFromMathExpression2D.getHeight() |
InputSlotMapParameterCollection |
ImageComparer2DAlgorithm.getOperands()
Deprecated.
|
InputSlotMapParameterCollection |
LegacyImageCalculator2DAlgorithm.getOperands()
Deprecated.
|
ImageComparer2DAlgorithm.Operation |
ImageComparer2DAlgorithm.getOperation()
Deprecated.
|
LegacyImageCalculator2DAlgorithm.Operation |
LegacyImageCalculator2DAlgorithm.getOperation()
Deprecated.
|
LegacyImageCalculator2DAlgorithm.Operation |
LegacyImageCalculator2DMergingAlgorithm.getOperation()
Deprecated.
|
JIPipeDataInfoRef |
ApplyColorMathExpression2DExpression.getOutputType() |
int |
ApplyVectorMathExpression2DAlgorithm.getOutputVectorSize() |
double |
RemoveNaNFilter2DAlgorithm.getRadius() |
int |
GenerateVectorFromMathExpression.getSizeC() |
int |
GenerateFromMathExpression2D.getSizeC() |
int |
GenerateVectorFromMathExpression.getSizeT() |
int |
GenerateFromMathExpression2D.getSizeT() |
int |
GenerateVectorFromMathExpression.getSizeZ() |
int |
GenerateFromMathExpression2D.getSizeZ() |
double |
Hessian2DAlgorithm.getSmoothing()
Deprecated.
|
JIPipeExpressionParameter |
ApplyVectorMathExpression2DAlgorithm.getTransformation() |
ApplyTransform2DAlgorithm.Transformation |
ApplyTransform2DAlgorithm.getTransformation() |
JIPipeExpressionParameter |
ApplyMathExpression2DAlgorithm.getTransformation() |
LegacyApplyMath2DAlgorithm.Transformation |
LegacyApplyMath2DAlgorithm.getTransformation()
Deprecated.
|
double |
LegacyApplyMath2DAlgorithm.getValue()
Deprecated.
|
int |
GenerateVectorFromMathExpression.getWidth() |
int |
GenerateFromMathExpression2D.getWidth() |
boolean |
Hessian2DAlgorithm.isCompareAbsolute()
Deprecated.
|
boolean |
LegacyImageCalculator2DAlgorithm.isFloatingPointOutput()
Deprecated.
|
boolean |
LegacyImageCalculator2DMergingAlgorithm.isFloatingPointOutput()
Deprecated.
|
boolean |
ImageComparer2DAlgorithm.isInvert()
Deprecated.
|
boolean |
DivideByMaximumAlgorithm.isRecalibrate() |
| Modifier and Type | Class and Description |
|---|---|
class |
ApplyDistanceTransform2DAlgorithm
Wrapper around
EDM |
class |
ChamferDistanceMap2DAlgorithm |
class |
ChamferDistanceMap3DAlgorithm |
class |
GeodesicDistanceMap2DAlgorithm |
class |
LabelChamferDistanceMap3DAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
int |
ApplyDistanceTransform2DAlgorithm.getBackgroundValue() |
inra.ijpb.binary.ChamferWeights |
GeodesicDistanceMap2DAlgorithm.getChamferWeights() |
inra.ijpb.binary.ChamferWeights3D |
ChamferDistanceMap3DAlgorithm.getChamferWeights() |
inra.ijpb.binary.ChamferWeights |
ChamferDistanceMap2DAlgorithm.getChamferWeights() |
inra.ijpb.binary.ChamferWeights3D |
LabelChamferDistanceMap3DAlgorithm.getChamferWeights() |
JIPipeDataInfoRef |
GeodesicDistanceMap2DAlgorithm.getOutputType() |
JIPipeDataInfoRef |
ChamferDistanceMap3DAlgorithm.getOutputType() |
JIPipeDataInfoRef |
ChamferDistanceMap2DAlgorithm.getOutputType() |
JIPipeDataInfoRef |
LabelChamferDistanceMap3DAlgorithm.getOutputType() |
boolean |
ApplyDistanceTransform2DAlgorithm.isEdgesAreBackground() |
boolean |
GeodesicDistanceMap2DAlgorithm.isNormalize() |
boolean |
ChamferDistanceMap3DAlgorithm.isNormalize() |
boolean |
ChamferDistanceMap2DAlgorithm.isNormalize() |
boolean |
LabelChamferDistanceMap3DAlgorithm.isNormalize() |
| Modifier and Type | Class and Description |
|---|---|
class |
ExtendedMaxima2DAlgorithm |
class |
ExtendedMaxima3DAlgorithm |
class |
ExtendedMinima2DAlgorithm |
class |
ExtendedMinima3DAlgorithm |
class |
ImposeMaxima2DAlgorithm |
class |
ImposeMaxima3DAlgorithm |
class |
LocalImageCalculator2DExpression |
class |
LocalMaximumFilter2DAlgorithm
Wrapper around
RankFilters |
class |
LocalMaximumFilter3DAlgorithm
Wrapper around
RankFilters |
class |
LocalMinimumFilter2DAlgorithm
Wrapper around
RankFilters |
class |
LocalMinimumFilter3DAlgorithm
Wrapper around
RankFilters |
class |
LocalVarianceFilter2DAlgorithm
Wrapper around
RankFilters |
class |
LocalVarianceFilter3DAlgorithm
Wrapper around
RankFilters |
class |
RegionalMaxima2DAlgorithm |
class |
RegionalMaxima3DAlgorithm |
class |
RegionalMinima2DAlgorithm |
class |
RegionalMinima3DAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
Neighborhood3D |
RegionalMinima3DAlgorithm.getConnectivity() |
Neighborhood3D |
ExtendedMinima3DAlgorithm.getConnectivity() |
Neighborhood3D |
RegionalMaxima3DAlgorithm.getConnectivity() |
Neighborhood2D |
RegionalMaxima2DAlgorithm.getConnectivity() |
Neighborhood2D |
ExtendedMaxima2DAlgorithm.getConnectivity() |
Neighborhood3D |
ExtendedMaxima3DAlgorithm.getConnectivity() |
Neighborhood2D |
RegionalMinima2DAlgorithm.getConnectivity() |
Neighborhood2D |
ExtendedMinima2DAlgorithm.getConnectivity() |
double |
ExtendedMinima3DAlgorithm.getDynamic() |
double |
ExtendedMaxima2DAlgorithm.getDynamic() |
double |
ExtendedMaxima3DAlgorithm.getDynamic() |
double |
ExtendedMinima2DAlgorithm.getDynamic() |
JIPipeExpressionParameter |
LocalImageCalculator2DExpression.getExpression() |
int |
LocalImageCalculator2DExpression.getLocalWindowHeight() |
int |
LocalImageCalculator2DExpression.getLocalWindowWidth() |
double |
LocalMinimumFilter2DAlgorithm.getRadius() |
double |
LocalVarianceFilter2DAlgorithm.getRadius() |
double |
LocalMaximumFilter2DAlgorithm.getRadius() |
float |
LocalMaximumFilter3DAlgorithm.getRadiusX() |
float |
LocalMinimumFilter3DAlgorithm.getRadiusX() |
float |
LocalVarianceFilter3DAlgorithm.getRadiusX() |
float |
LocalMaximumFilter3DAlgorithm.getRadiusY() |
float |
LocalMinimumFilter3DAlgorithm.getRadiusY() |
float |
LocalVarianceFilter3DAlgorithm.getRadiusY() |
float |
LocalMaximumFilter3DAlgorithm.getRadiusZ() |
float |
LocalMinimumFilter3DAlgorithm.getRadiusZ() |
float |
LocalVarianceFilter3DAlgorithm.getRadiusZ() |
SourceWrapMode |
LocalImageCalculator2DExpression.getSourceWrapMode() |
| Modifier and Type | Class and Description |
|---|---|
class |
ChangeImageMetadataFromExpressionsAlgorithm
Wrapper around
RoiManager |
class |
ExtractImageMetadataAlgorithm |
class |
RemoveImageMetadataAlgorithm |
class |
SetImageMetadataFromTableAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
JIPipeExpressionParameter |
RemoveImageMetadataAlgorithm.getFilterExpression() |
OptionalJIPipeExpressionParameter |
ChangeImageMetadataFromExpressionsAlgorithm.getImageTitle() |
boolean |
SetImageMetadataFromTableAlgorithm.isClearBeforeWrite() |
| Modifier and Type | Class and Description |
|---|---|
class |
DataToPreviewAlgorithm |
class |
RenderJIPipeProjectAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
int |
DataToPreviewAlgorithm.getPreviewHeight() |
int |
DataToPreviewAlgorithm.getPreviewWidth() |
RenderPipelineRunSettings |
RenderJIPipeProjectAlgorithm.getSettings() |
| Modifier and Type | Class and Description |
|---|---|
class |
InputImagesToMontage
Deprecated.
|
class |
InputImagesToMontage2 |
class |
MontageToStackAlgorithm
Implementation of
MontageMaker |
class |
StackToMontage2Algorithm
Implementation of
MontageMaker |
class |
StackToMontageAlgorithm
Deprecated.
|
| Modifier and Type | Method and Description |
|---|---|
Color |
StackToMontageAlgorithm.getBackgroundColor()
Deprecated.
|
Color |
InputImagesToMontage.getBackgroundColor()
Deprecated.
|
int |
MontageToStackAlgorithm.getBorderWidth() |
int |
StackToMontageAlgorithm.getBorderWidth()
Deprecated.
|
int |
InputImagesToMontage.getBorderWidth()
Deprecated.
|
CanvasEqualizer |
InputImagesToMontage.getCanvasEqualizer()
Deprecated.
|
int |
MontageToStackAlgorithm.getColumns() |
OptionalIntegerParameter |
StackToMontageAlgorithm.getColumns()
Deprecated.
|
OptionalIntegerParameter |
InputImagesToMontage.getColumns()
Deprecated.
|
OptionalIntegerParameter |
StackToMontageAlgorithm.getFirstIndex()
Deprecated.
|
int |
StackToMontageAlgorithm.getFontSize()
Deprecated.
|
int |
InputImagesToMontage.getFontSize()
Deprecated.
|
Color |
StackToMontageAlgorithm.getForegroundColor()
Deprecated.
|
Color |
InputImagesToMontage.getForegroundColor()
Deprecated.
|
int |
StackToMontageAlgorithm.getIndexIncrement()
Deprecated.
|
JIPipeDataByMetadataExporter |
InputImagesToMontage.getLabelGenerator()
Deprecated.
|
OptionalIntegerParameter |
StackToMontageAlgorithm.getLastIndex()
Deprecated.
|
MontageCreator |
StackToMontage2Algorithm.getMontageCreator() |
MontageCreator |
InputImagesToMontage2.getMontageCreator() |
int |
MontageToStackAlgorithm.getRows() |
OptionalIntegerParameter |
StackToMontageAlgorithm.getRows()
Deprecated.
|
OptionalIntegerParameter |
InputImagesToMontage.getRows()
Deprecated.
|
double |
StackToMontageAlgorithm.getScale()
Deprecated.
|
double |
InputImagesToMontage.getScale()
Deprecated.
|
JIPipeExpressionParameter |
StackToMontage2Algorithm.getSliceFilter() |
JIPipeDataByMetadataExporter |
InputImagesToMontage.getSortingLabelGenerator()
Deprecated.
|
boolean |
InputImagesToMontage.isDrawLabels()
Deprecated.
|
boolean |
StackToMontageAlgorithm.isLabels()
Deprecated.
|
| Modifier and Type | Class and Description |
|---|---|
class |
FindHoles2DAlgorithm |
class |
GrayscaleAttributeFiltering2DAlgorithm |
class |
GrayscaleAttributeFiltering3DAlgorithm |
class |
MorphologicalReconstruction2DAlgorithm |
class |
MorphologicalReconstruction3DAlgorithm |
class |
Morphology2DAlgorithm
Wrapper around
ImageProcessor |
class |
Morphology3DAlgorithm
Wrapper around
ImageProcessor |
class |
MorphologyBinary2DAlgorithm
Wrapper around
ImageProcessor |
class |
MorphologyFillHoles2DAlgorithm
Wrapper around
ImageProcessor |
class |
MorphologyInternalGradient2DAlgorithm
Wrapper around
ImageProcessor |
class |
MorphologyOutline2DAlgorithm
Wrapper around
ImageProcessor |
class |
MorphologySkeletonize2DAlgorithm
Wrapper around
ImageProcessor |
class |
MorphologySkeletonize3DAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
AddBorder2DAlgorithm |
Morphology2DAlgorithm.getAddBorder2DAlgorithm() |
GrayscaleAttributeFiltering2DAlgorithm.Attribute |
GrayscaleAttributeFiltering2DAlgorithm.getAttribute() |
GrayscaleAttributeFiltering3DAlgorithm.Attribute |
GrayscaleAttributeFiltering3DAlgorithm.getAttribute() |
Neighborhood2D |
GrayscaleAttributeFiltering2DAlgorithm.getConnectivity() |
Neighborhood3D |
GrayscaleAttributeFiltering3DAlgorithm.getConnectivity() |
Neighborhood2D |
MorphologicalReconstruction3DAlgorithm.getConnectivity() |
Neighborhood2D |
MorphologicalReconstruction2DAlgorithm.getConnectivity() |
inra.ijpb.morphology.Strel3D.Shape |
Morphology3DAlgorithm.getElement() |
inra.ijpb.morphology.Strel.Shape |
Morphology2DAlgorithm.getElement() |
int |
MorphologyBinary2DAlgorithm.getIterations() |
int |
GrayscaleAttributeFiltering2DAlgorithm.getMinimumValue() |
int |
GrayscaleAttributeFiltering3DAlgorithm.getMinVoxelNumber() |
GrayscaleAttributeFiltering2DAlgorithm.Operation |
GrayscaleAttributeFiltering2DAlgorithm.getOperation() |
GrayscaleAttributeFiltering3DAlgorithm.Operation |
GrayscaleAttributeFiltering3DAlgorithm.getOperation() |
MorphologyBinary2DAlgorithm.Operation |
MorphologyBinary2DAlgorithm.getOperation() |
inra.ijpb.morphology.Morphology.Operation |
Morphology3DAlgorithm.getOperation() |
inra.ijpb.morphology.Morphology.Operation |
Morphology2DAlgorithm.getOperation() |
double |
MorphologyInternalGradient2DAlgorithm.getRadius() |
int |
Morphology3DAlgorithm.getRadius() |
int |
Morphology2DAlgorithm.getRadius() |
boolean |
Morphology2DAlgorithm.isAddBorder() |
boolean |
MorphologicalReconstruction3DAlgorithm.isApplyDilation() |
boolean |
MorphologicalReconstruction2DAlgorithm.isApplyDilation() |
boolean |
FindHoles2DAlgorithm.isBlackBackground() |
boolean |
MorphologyFillHoles2DAlgorithm.isBlackBackground() |
boolean |
MorphologySkeletonize2DAlgorithm.isDarkBackground() |
| Modifier and Type | Class and Description |
|---|---|
class |
AddNoise2DAlgorithm
Wrapper around
ImageProcessor |
class |
AddSaltAndPepperNoise2DAlgorithm
Wrapper around
ImageProcessor |
class |
DespeckleFilter2DAlgorithm
Wrapper around
RankFilters |
class |
RemoveOutliersFilter2DAlgorithm
Wrapper around
RankFilters |
| Modifier and Type | Method and Description |
|---|---|
RemoveOutliersFilter2DAlgorithm.Mode |
RemoveOutliersFilter2DAlgorithm.getMode() |
double |
AddSaltAndPepperNoise2DAlgorithm.getPercent() |
double |
RemoveOutliersFilter2DAlgorithm.getRadius() |
double |
AddNoise2DAlgorithm.getSigma() |
float |
RemoveOutliersFilter2DAlgorithm.getThreshold() |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateOMEWithMetadataAlgorithm |
class |
ExtractOMEROIAlgorithm |
class |
ExtractOMEXMLAlgorithm |
class |
OMEMetadataToTableAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
OMEAccessorParameter |
OMEMetadataToTableAlgorithm.Entry.getAccessor() |
OMEAccessorParameter |
AnnotateOMEWithMetadataAlgorithm.Entry.getAccessor() |
JIPipeTextAnnotationMergeMode |
AnnotateOMEWithMetadataAlgorithm.getAnnotationMergeMode() |
JIPipeExpressionParameter |
AnnotateOMEWithMetadataAlgorithm.Entry.getAnnotationName() |
JIPipeExpressionParameter |
OMEMetadataToTableAlgorithm.Entry.getColumnName() |
ParameterCollectionList |
OMEMetadataToTableAlgorithm.getEntries() |
ParameterCollectionList |
AnnotateOMEWithMetadataAlgorithm.getEntries() |
| Modifier and Type | Class and Description |
|---|---|
class |
MSEBlockFlowAlgorithm
Adapted from
mpicbg.ij.plugin.MSEBlockFlow, as the methods there are all protected/private |
class |
MSEGaussianFlowAlgorithm
Adapted from
mpicbg.ij.plugin.MSEGaussianFlow, as the methods there are all protected/private |
class |
PMCCBlockFlowAlgorithm
Adapted from
mpicbg.ij.plugin.PMCCBlockFlow, as the methods there are all protected/private |
| Modifier and Type | Method and Description |
|---|---|
int |
PMCCBlockFlowAlgorithm.getBlockRadius() |
int |
MSEBlockFlowAlgorithm.getBlockRadius() |
int |
MSEGaussianFlowAlgorithm.getMaxDistance() |
int |
PMCCBlockFlowAlgorithm.getMaxDistance() |
int |
MSEBlockFlowAlgorithm.getMaxDistance() |
int |
MSEGaussianFlowAlgorithm.getSigma() |
boolean |
MSEGaussianFlowAlgorithm.isAddLastIdentityField() |
boolean |
PMCCBlockFlowAlgorithm.isAddLastIdentityField() |
boolean |
MSEBlockFlowAlgorithm.isAddLastIdentityField() |
boolean |
MSEGaussianFlowAlgorithm.isOutputPolarCoordinates() |
boolean |
PMCCBlockFlowAlgorithm.isOutputPolarCoordinates() |
boolean |
MSEBlockFlowAlgorithm.isOutputPolarCoordinates() |
boolean |
MSEGaussianFlowAlgorithm.isRelativeDistances() |
boolean |
PMCCBlockFlowAlgorithm.isRelativeDistances() |
boolean |
MSEBlockFlowAlgorithm.isRelativeDistances() |
| Modifier and Type | Class and Description |
|---|---|
class |
ExtractOverlayAlgorithm |
class |
RemoveOverlayAlgorithm |
class |
RenderOverlayAlgorithm
Wrapper around
RoiDrawer |
class |
SetOverlayAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
ROIElementDrawingMode |
RenderOverlayAlgorithm.getDrawFilledOutlineMode() |
RoiLabel |
RenderOverlayAlgorithm.getDrawnLabel() |
ROIElementDrawingMode |
RenderOverlayAlgorithm.getDrawOutlineMode() |
OptionalColorParameter |
RenderOverlayAlgorithm.getLabelBackground() |
Color |
RenderOverlayAlgorithm.getLabelForeground() |
int |
RenderOverlayAlgorithm.getLabelSize() |
double |
RenderOverlayAlgorithm.getMagnification() |
double |
RenderOverlayAlgorithm.getOpacity() |
OptionalColorParameter |
RenderOverlayAlgorithm.getOverrideFillColor() |
OptionalColorParameter |
RenderOverlayAlgorithm.getOverrideLineColor() |
OptionalDoubleParameter |
RenderOverlayAlgorithm.getOverrideLineWidth() |
boolean |
RenderOverlayAlgorithm.isIgnoreC() |
boolean |
RenderOverlayAlgorithm.isIgnoreT() |
boolean |
RenderOverlayAlgorithm.isIgnoreZ() |
boolean |
RenderOverlayAlgorithm.isPreferRenderViaOverlay() |
| Modifier and Type | Class and Description |
|---|---|
class |
SimpleImageRegistrationAlgorithm
Port of
Register_Virtual_Stack_MT |
| Modifier and Type | Method and Description |
|---|---|
SimpleBUnwarpJParameters |
SimpleImageRegistrationAlgorithm.getbUnwarpJParameters() |
double |
SimpleBUnwarpJParameters.getConsistencyWeight() |
double |
SimpleBUnwarpJParameters.getCurlWeight() |
double |
SimpleBUnwarpJParameters.getDivergenceWeight() |
int |
SIFTParameters.getFeatureDescriptorOrientationBins() |
int |
SIFTParameters.getFeatureDescriptorSize() |
SimpleImageRegistrationFeatureModel |
SimpleImageRegistrationParameters.getImageRegistrationFeatureModel() |
SimpleImageRegistrationModel |
SimpleImageRegistrationParameters.getImageRegistrationModel() |
int |
SimpleBUnwarpJParameters.getImageSubsamplingFactor() |
double |
SimpleBUnwarpJParameters.getImageWeight() |
float |
SIFTParameters.getInitialSigma() |
double |
SimpleBUnwarpJParameters.getLandmarkWeight() |
float |
SimpleImageRegistrationParameters.getMaxEpsilon() |
BUnwarpJMaxScaleDeformation |
SimpleBUnwarpJParameters.getMaxScaleDeformation() |
float |
SimpleImageRegistrationParameters.getMinInlierRatio() |
BUnwarpJMinScaleDeformation |
SimpleBUnwarpJParameters.getMinScaleDeformation() |
BUnwarpJMode |
SimpleBUnwarpJParameters.getMode() |
Vector2iParameter |
SIFTParameters.getOctaveSizeLimits() |
SimpleImageRegistrationParameters |
SimpleImageRegistrationAlgorithm.getParameters() |
float |
SimpleImageRegistrationParameters.getRod() |
SIFTParameters |
SimpleImageRegistrationAlgorithm.getSiftParameters() |
int |
SIFTParameters.getStepsPerScale() |
double |
SimpleBUnwarpJParameters.getStopThreshold() |
boolean |
SimpleImageRegistrationParameters.isInterpolate() |
| Modifier and Type | Class and Description |
|---|---|
class |
TurboRegRegistration2DReferencedAlgorithm
Port of
Register_Virtual_Stack_MT |
class |
TurboRegRegistration2DSingleAlgorithm
Port of
Register_Virtual_Stack_MT |
| Modifier and Type | Method and Description |
|---|---|
AdvancedTurboRegParameters |
TurboRegRegistration2DReferencedAlgorithm.getAdvancedTurboRegParameters() |
AdvancedTurboRegParameters |
TurboRegRegistration2DSingleAlgorithm.getAdvancedTurboRegParameters() |
JIPipeExpressionParameter |
TurboRegRegistrationAlgorithmRule.getCondition() |
int |
AdvancedTurboRegParameters.getMinSize() |
JIPipeExpressionParameter |
TurboRegRegistrationAlgorithmRule.getReferenceCIndex() |
JIPipeExpressionParameter |
TurboRegRegistrationAlgorithmRule.getReferenceTIndex() |
JIPipeExpressionParameter |
TurboRegRegistrationAlgorithmRule.getReferenceZIndex() |
ParameterCollectionList |
TurboRegRegistration2DReferencedAlgorithm.getRules() |
ParameterCollectionList |
TurboRegRegistration2DSingleAlgorithm.getRules() |
TurboRegRegistrationAlgorithmRuleType |
TurboRegRegistrationAlgorithmRule.getRuleType() |
TurboRegTransformationType |
TurboRegRegistration2DReferencedAlgorithm.getTransformationType() |
TurboRegTransformationType |
TurboRegRegistration2DSingleAlgorithm.getTransformationType() |
boolean |
TurboRegRegistration2DReferencedAlgorithm.isRestoreOriginalAnnotations() |
boolean |
TurboRegRegistration2DSingleAlgorithm.isRestoreOriginalAnnotations() |
| Modifier and Type | Class and Description |
|---|---|
class |
CropToRoiAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
OptionalTextAnnotationNameParameter |
CropToRoiAlgorithm.getAnnotationBoundingHeight() |
OptionalTextAnnotationNameParameter |
CropToRoiAlgorithm.getAnnotationBoundingWidth() |
OptionalTextAnnotationNameParameter |
CropToRoiAlgorithm.getAnnotationC() |
JIPipeTextAnnotationMergeMode |
CropToRoiAlgorithm.getAnnotationMergeStrategy() |
OptionalTextAnnotationNameParameter |
CropToRoiAlgorithm.getAnnotationT() |
OptionalTextAnnotationNameParameter |
CropToRoiAlgorithm.getAnnotationX() |
OptionalTextAnnotationNameParameter |
CropToRoiAlgorithm.getAnnotationY() |
OptionalTextAnnotationNameParameter |
CropToRoiAlgorithm.getAnnotationZ() |
boolean |
CropToRoiAlgorithm.isCropC() |
boolean |
CropToRoiAlgorithm.isCropT() |
boolean |
CropToRoiAlgorithm.isCropXY() |
boolean |
CropToRoiAlgorithm.isCropZ() |
| Modifier and Type | Class and Description |
|---|---|
class |
RoiPropertiesToAnnotationsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
AssembleExtractedROIAlgorithm |
class |
ExtractFromROIAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ExtractImageInRoiAlgorithm |
class |
GetRoiImageAlgorithm
Wrapper around
RoiManager |
class |
ROIToLabelsByNameAlgorithm |
class |
ROIToLabelsExpressionAlgorithm |
class |
RoiToMaskAlgorithm
Wrapper around
RoiManager |
class |
RoiToRGBAlgorithm
Wrapper around
RoiDrawer |
class |
UnreferencedRoiToMaskAlgorithm
Wrapper around
RoiManager |
class |
UnreferencedRoiToRGBAlgorithm
Wrapper around
RoiManager |
| Modifier and Type | Method and Description |
|---|---|
OptionalTextAnnotationNameParameter |
ExtractImageInRoiAlgorithm.getAnnotationCLocation() |
OptionalTextAnnotationNameParameter |
ExtractImageInRoiAlgorithm.getAnnotationTLocation() |
OptionalTextAnnotationNameParameter |
ExtractImageInRoiAlgorithm.getAnnotationXLocation() |
OptionalTextAnnotationNameParameter |
ExtractImageInRoiAlgorithm.getAnnotationYLocation() |
OptionalTextAnnotationNameParameter |
ExtractImageInRoiAlgorithm.getAnnotationZLocation() |
ROIElementDrawingMode |
RoiToRGBAlgorithm.getDrawFilledOutlineMode() |
ROIElementDrawingMode |
UnreferencedRoiToRGBAlgorithm.getDrawFilledOutlineMode() |
RoiLabel |
RoiToRGBAlgorithm.getDrawnLabel() |
ROIElementDrawingMode |
RoiToRGBAlgorithm.getDrawOutlineMode() |
ROIElementDrawingMode |
UnreferencedRoiToRGBAlgorithm.getDrawOutlineMode() |
Margin |
UnreferencedRoiToMaskAlgorithm.getImageArea() |
Margin |
UnreferencedRoiToRGBAlgorithm.getImageArea() |
int |
ROIToLabelsByNameAlgorithm.ROINameToLabelEntry.getLabel() |
ParameterCollectionList |
ROIToLabelsByNameAlgorithm.getLabelAssignment() |
OptionalColorParameter |
RoiToRGBAlgorithm.getLabelBackground() |
FontFamilyParameter |
RoiToRGBAlgorithm.getLabelFontFamily() |
Color |
RoiToRGBAlgorithm.getLabelForeground() |
int |
RoiToRGBAlgorithm.getLabelSize() |
int |
RoiToMaskAlgorithm.getLineThickness() |
int |
UnreferencedRoiToMaskAlgorithm.getLineThickness() |
double |
RoiToRGBAlgorithm.getMagnification() |
String |
ROIToLabelsByNameAlgorithm.ROINameToLabelEntry.getName() |
double |
RoiToRGBAlgorithm.getOpacity() |
OptionalColorParameter |
RoiToRGBAlgorithm.getOverrideFillColor() |
OptionalColorParameter |
UnreferencedRoiToRGBAlgorithm.getOverrideFillColor() |
OptionalColorParameter |
RoiToRGBAlgorithm.getOverrideLineColor() |
OptionalColorParameter |
UnreferencedRoiToRGBAlgorithm.getOverrideLineColor() |
OptionalDoubleParameter |
RoiToRGBAlgorithm.getOverrideLineWidth() |
OptionalDoubleParameter |
UnreferencedRoiToRGBAlgorithm.getOverrideLineWidth() |
OptionalJIPipeExpressionParameter |
ROIToLabelsExpressionAlgorithm.getRoiToLabelTransformation() |
boolean |
RoiToMaskAlgorithm.isDrawFilledOutline() |
boolean |
UnreferencedRoiToMaskAlgorithm.isDrawFilledOutline() |
boolean |
UnreferencedRoiToRGBAlgorithm.isDrawLabel() |
boolean |
RoiToMaskAlgorithm.isDrawOutline() |
boolean |
UnreferencedRoiToMaskAlgorithm.isDrawOutline() |
boolean |
ROIToLabelsByNameAlgorithm.isDrawOutline() |
boolean |
ROIToLabelsExpressionAlgorithm.isDrawOutline() |
boolean |
RoiToRGBAlgorithm.isDrawOver() |
boolean |
RoiToMaskAlgorithm.isDrawOver() |
boolean |
UnreferencedRoiToRGBAlgorithm.isDrawOver() |
boolean |
ROIToLabelsByNameAlgorithm.isFillOutline() |
boolean |
ROIToLabelsExpressionAlgorithm.isFillOutline() |
boolean |
RoiToRGBAlgorithm.isIgnoreC() |
boolean |
ExtractImageInRoiAlgorithm.isIgnoreC() |
boolean |
UnreferencedRoiToRGBAlgorithm.isIgnoreC() |
boolean |
RoiToRGBAlgorithm.isIgnoreT() |
boolean |
ExtractImageInRoiAlgorithm.isIgnoreT() |
boolean |
UnreferencedRoiToRGBAlgorithm.isIgnoreT() |
boolean |
RoiToRGBAlgorithm.isIgnoreZ() |
boolean |
ExtractImageInRoiAlgorithm.isIgnoreZ() |
boolean |
UnreferencedRoiToRGBAlgorithm.isIgnoreZ() |
boolean |
UnreferencedRoiToMaskAlgorithm.isPreferAssociatedImage() |
boolean |
UnreferencedRoiToRGBAlgorithm.isPreferAssociatedImage() |
boolean |
RoiToRGBAlgorithm.isPreferRenderViaOverlay() |
| Modifier and Type | Class and Description |
|---|---|
class |
DrawLineOvalRectangleRoiAlgorithm |
class |
DrawOvalRoiAlgorithm
Deprecated.
|
class |
DrawRectangleRoiAlgorithm
Deprecated.
|
class |
DrawScaleBarRoiAlgorithm |
class |
DrawTextRoiAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
double |
DrawTextRoiAlgorithm.getAngle() |
int |
DrawRectangleRoiAlgorithm.getArcHeight()
Deprecated.
|
JIPipeExpressionParameter |
DrawLineOvalRectangleRoiAlgorithm.Entry.getArcHeight() |
int |
DrawRectangleRoiAlgorithm.getArcWidth()
Deprecated.
|
JIPipeExpressionParameter |
DrawLineOvalRectangleRoiAlgorithm.Entry.getArcWidth() |
OptionalColorParameter |
DrawTextRoiAlgorithm.getBackgroundColor() |
OptionalColorParameter |
DrawScaleBarRoiAlgorithm.getBackgroundColor() |
InnerMargin |
DrawTextRoiAlgorithm.getBackgroundMargin() |
Color |
DrawScaleBarRoiAlgorithm.getBarColor() |
int |
DrawScaleBarRoiAlgorithm.getBarThickness() |
ParameterCollectionList |
DrawLineOvalRectangleRoiAlgorithm.getEntries() |
OptionalColorParameter |
VisualLocationROIProperties.getFillColor() |
OptionalColorParameter |
VisualROIProperties.getFillColor() |
FontFamilyParameter |
DrawTextRoiAlgorithm.getFontFamily() |
FontFamilyParameter |
DrawScaleBarRoiAlgorithm.TextSettings.getFontFamily() |
int |
DrawTextRoiAlgorithm.getFontSize() |
int |
DrawScaleBarRoiAlgorithm.TextSettings.getFontSize() |
FontStyleParameter |
DrawTextRoiAlgorithm.getFontStyle() |
FontStyleParameter |
DrawScaleBarRoiAlgorithm.TextSettings.getFontStyle() |
OptionalQuantity |
DrawScaleBarRoiAlgorithm.getHorizontalBarSize() |
JIPipeExpressionParameter |
DrawScaleBarRoiAlgorithm.TextSettings.getHorizontalLabel() |
OptionalColorParameter |
VisualLocationROIProperties.getLineColor() |
OptionalColorParameter |
VisualROIProperties.getLineColor() |
double |
VisualLocationROIProperties.getLineWidth() |
double |
VisualROIProperties.getLineWidth() |
FixedMargin |
DrawTextRoiAlgorithm.getLocation() |
ScaleBarGenerator.ScaleBarPosition |
DrawScaleBarRoiAlgorithm.getLocation() |
int |
VisualLocationROIProperties.getPositionC() |
int |
VisualLocationROIProperties.getPositionT() |
int |
VisualLocationROIProperties.getPositionZ() |
Margin.List |
DrawRectangleRoiAlgorithm.getRectangles()
Deprecated.
|
Margin.List |
DrawOvalRoiAlgorithm.getRectangles()
Deprecated.
|
JIPipeExpressionParameter |
VisualLocationROIProperties.getRoiName() |
OptionalJIPipeExpressionParameter |
VisualROIProperties.getRoiName() |
VisualLocationROIProperties |
DrawTextRoiAlgorithm.getRoiProperties() |
VisualLocationROIProperties |
DrawRectangleRoiAlgorithm.getRoiProperties()
Deprecated.
|
VisualLocationROIProperties |
DrawOvalRoiAlgorithm.getRoiProperties()
Deprecated.
|
VisualLocationROIProperties |
DrawLineOvalRectangleRoiAlgorithm.getRoiProperties() |
JIPipeExpressionParameter |
DrawTextRoiAlgorithm.getText() |
Color |
DrawScaleBarRoiAlgorithm.TextSettings.getTextColor() |
DrawScaleBarRoiAlgorithm.TextSettings |
DrawScaleBarRoiAlgorithm.getTextSettings() |
DrawLineOvalRectangleRoiAlgorithm.RoiType |
DrawLineOvalRectangleRoiAlgorithm.Entry.getType() |
OptionalQuantity |
DrawScaleBarRoiAlgorithm.getVerticalBarSize() |
JIPipeExpressionParameter |
DrawScaleBarRoiAlgorithm.TextSettings.getVerticalLabel() |
JIPipeExpressionParameter |
DrawLineOvalRectangleRoiAlgorithm.Entry.getX1() |
JIPipeExpressionParameter |
DrawLineOvalRectangleRoiAlgorithm.Entry.getX2() |
JIPipeExpressionParameter |
DrawLineOvalRectangleRoiAlgorithm.Entry.getY1() |
JIPipeExpressionParameter |
DrawLineOvalRectangleRoiAlgorithm.Entry.getY2() |
boolean |
DrawTextRoiAlgorithm.isAntialiased() |
boolean |
DrawTextRoiAlgorithm.isCenter() |
boolean |
DrawRectangleRoiAlgorithm.isCenter()
Deprecated.
|
boolean |
DrawOvalRoiAlgorithm.isCenter()
Deprecated.
|
boolean |
DrawScaleBarRoiAlgorithm.isDrawHorizontal() |
boolean |
DrawScaleBarRoiAlgorithm.isDrawVertical() |
boolean |
DrawScaleBarRoiAlgorithm.TextSettings.isHideLabels() |
| Modifier and Type | Class and Description |
|---|---|
class |
FilterRoiByNameAlgorithm
Wrapper around
RoiManager |
class |
FilterROIByOverlapAlgorithm |
class |
FilterRoiByStatisticsAlgorithm
Wrapper around
RoiManager |
class |
FilterRoiByStatisticsScriptAlgorithm
Wrapper around
RoiManager |
class |
FilterROIListsAlgorithm |
class |
RemoveBorderRoisAlgorithm
Wrapper around
RoiManager |
class |
SliceROIListAlgorithm
Wrapper around
RoiManager |
| Modifier and Type | Method and Description |
|---|---|
Margin |
RemoveBorderRoisAlgorithm.getBorderDefinition() |
PythonScript |
FilterRoiByStatisticsScriptAlgorithm.getCode() |
JIPipeExpressionParameter |
FilterROIListsAlgorithm.getFilter() |
JIPipeExpressionParameter |
FilterRoiByNameAlgorithm.getFilters() |
JIPipeExpressionParameter |
FilterRoiByStatisticsAlgorithm.getFilters() |
ImageStatisticsSetParameter |
FilterRoiByStatisticsAlgorithm.getMeasurements() |
RoiOutline |
RemoveBorderRoisAlgorithm.getOutline() |
OptionalJIPipeExpressionParameter |
FilterROIByOverlapAlgorithm.ROIFilterSettings.getOverlapFilter() |
ImageStatisticsSetParameter |
FilterROIByOverlapAlgorithm.getOverlapFilterMeasurements() |
FilterROIByOverlapAlgorithm.ROIFilterSettings |
FilterROIByOverlapAlgorithm.getRoi1Settings() |
FilterROIByOverlapAlgorithm.ROIFilterSettings |
FilterROIByOverlapAlgorithm.getRoi2Settings() |
JIPipeDynamicParameterCollection |
FilterRoiByStatisticsScriptAlgorithm.getScriptParameters() |
IntegerRange |
SliceROIListAlgorithm.getSelectedIndices() |
boolean |
SliceROIListAlgorithm.isAutoClamp() |
boolean |
FilterROIByOverlapAlgorithm.ROIFilterSettings.isConsumeOnOverlap() |
boolean |
FilterROIByOverlapAlgorithm.ROIFilterSettings.isEnabled() |
boolean |
FilterROIByOverlapAlgorithm.ROIFilterSettings.isEnforceOverlap() |
boolean |
FilterROIByOverlapAlgorithm.ROIFilterSettings.isFastMode() |
boolean |
FilterROIByOverlapAlgorithm.ROIFilterSettings.isIgnoreC() |
boolean |
FilterROIByOverlapAlgorithm.ROIFilterSettings.isIgnoreT() |
boolean |
FilterROIByOverlapAlgorithm.ROIFilterSettings.isInvert() |
boolean |
FilterRoiByStatisticsAlgorithm.isMeasureInPhysicalUnits() |
boolean |
FilterROIByOverlapAlgorithm.ROIFilterSettings.isMeasureInPhysicalUnits() |
boolean |
FilterRoiByNameAlgorithm.isOutputEmptyLists() |
boolean |
FilterROIListsAlgorithm.isOutputEmptyLists() |
boolean |
FilterRoiByStatisticsAlgorithm.isOutputEmptyLists() |
boolean |
FilterROIByOverlapAlgorithm.ROIFilterSettings.isOutputOverlaps() |
| Modifier and Type | Class and Description |
|---|---|
class |
AppendRectangularRoiAlgorithm
Deprecated.
|
class |
DefineRectangularRoiAlgorithm
Deprecated.
|
class |
GenerateMissingRoiListsAlgorithm |
class |
MaskToRoiAlgorithm |
class |
ReferencedAppendRectangularRoiAlgorithm
Deprecated.
|
class |
ReferencedDefineRectangularRoiAlgorithm
Deprecated.
|
class |
TableToCircularROIAlgorithm
Wrapper around
RoiManager |
class |
TableToLineROIAlgorithm
Wrapper around
RoiManager |
class |
TableToPointROIAlgorithm
Wrapper around
RoiManager |
class |
TableToRectangularROIAlgorithm
Wrapper around
RoiManager |
class |
TableToTextROIAlgorithm
Wrapper around
RoiManager |
| Modifier and Type | Class and Description |
|---|---|
class |
CountROIAlgorithm |
class |
ExtractRoi2DRelationStatisticsAlgorithm |
class |
ExtractROIProfileAlgorithm |
class |
RoiStatisticsAlgorithm
Wrapper around
RoiManager |
| Modifier and Type | Method and Description |
|---|---|
OptionalStringParameter |
RoiStatisticsAlgorithm.getIndexAnnotation() |
ImageStatisticsSetParameter |
RoiStatisticsAlgorithm.getMeasurements() |
ROI2DRelationMeasurementSetParameter |
ExtractRoi2DRelationStatisticsAlgorithm.getMeasurements() |
ExtractROIProfileAlgorithm.RectangleMode |
ExtractROIProfileAlgorithm.getRectangleMode() |
OptionalDataAnnotationNameParameter |
ExtractROIProfileAlgorithm.getRoiDataAnnotation() |
OptionalTextAnnotationNameParameter |
ExtractROIProfileAlgorithm.getRoiIndexAnnotation() |
OptionalTextAnnotationNameParameter |
ExtractROIProfileAlgorithm.getRoiNameAnnotation() |
boolean |
CountROIAlgorithm.isAddAnnotations() |
boolean |
RoiStatisticsAlgorithm.isAddNameToTable() |
boolean |
RoiStatisticsAlgorithm.isApplyPerChannel() |
boolean |
RoiStatisticsAlgorithm.isApplyPerFrame() |
boolean |
RoiStatisticsAlgorithm.isApplyPerSlice() |
boolean |
ExtractROIProfileAlgorithm.isMeasureInPhysicalUnits() |
boolean |
RoiStatisticsAlgorithm.isMeasureInPhysicalUnits() |
boolean |
ExtractRoi2DRelationStatisticsAlgorithm.isMeasureInPhysicalUnits() |
boolean |
ExtractRoi2DRelationStatisticsAlgorithm.isPreciseColocalization() |
boolean |
ExtractRoi2DRelationStatisticsAlgorithm.isRequireColocalization() |
| Modifier and Type | Class and Description |
|---|---|
class |
FilterAndMergeRoiByStatisticsScriptAlgorithm
Wrapper around
RoiManager |
class |
MergeRoiListsOrderedAlgorithm
Wrapper around
RoiManager |
class |
MergeRoiListsPairwiseOrAlgorithm
Wrapper around
RoiManager |
class |
MergeRoiListsUnorderedAlgorithm
Wrapper around
RoiManager |
| Modifier and Type | Method and Description |
|---|---|
PythonScript |
FilterAndMergeRoiByStatisticsScriptAlgorithm.getCode() |
JIPipeDynamicParameterCollection |
FilterAndMergeRoiByStatisticsScriptAlgorithm.getScriptParameters() |
| Modifier and Type | Class and Description |
|---|---|
class |
ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm |
class |
ChangeRoiPropertiesAlgorithm
Wrapper around
RoiManager |
class |
ChangeRoiPropertiesFromAnnotationsAlgorithm
Wrapper around
RoiManager |
class |
ChangeRoiPropertiesFromExpressionsAlgorithm
Wrapper around
RoiManager |
class |
ChangeRoiPropertiesFromTableAlgorithm
Wrapper around
RoiManager |
class |
ColorRoiByNameAlgorithm |
class |
ColorRoiByStatisticsAlgorithm
Wrapper around
RoiManager |
class |
CropRoiListAlgorithm
Wrapper around
RoiManager |
class |
EnlargeShrinkRoiAlgorithm
Wrapper around
RoiManager |
class |
FlattenRoiAlgorithm
Wrapper around
RoiManager |
class |
OutlineRoiAlgorithm
Wrapper around
RoiManager |
class |
OutlineRoiConcaveHullMoreiraSantosAlgorithm |
class |
ReorderRoiDimensionsAlgorithm
Algorithm that reorders Hyperstack dimensions
|
class |
RoiCalculatorAlgorithm
Wrapper around
RoiManager |
class |
RoiFloodFillAlgorithm
Wrapper around
RoiManager |
class |
RoiToCentroidAlgorithm
Wrapper around
RoiManager |
class |
RotateRoiAlgorithm
Wrapper around
RoiManager |
class |
ScaleRoiAlgorithm
Wrapper around
RoiManager |
class |
SetRoiImageAlgorithm
Wrapper around
RoiManager |
class |
UnsetRoiImageAlgorithm
Wrapper around
RoiManager |
| Modifier and Type | Method and Description |
|---|---|
JIPipeExpressionParameter |
RotateRoiAlgorithm.getAngle() |
OptionalTextAnnotationNameParameter |
ChangeRoiPropertiesFromAnnotationsAlgorithm.getCenterScale() |
boolean |
ScaleRoiAlgorithm.getCenterScale() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromExpressionsAlgorithm.getCenterScale() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromTableAlgorithm.getCenterScale() |
boolean |
ChangeRoiPropertiesAlgorithm.getCenterScale() |
JIPipeExpressionParameter |
RotateRoiAlgorithm.getCenterX() |
JIPipeExpressionParameter |
RotateRoiAlgorithm.getCenterY() |
StringQueryExpression |
ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm.getExpression() |
OptionalTextAnnotationNameParameter |
ChangeRoiPropertiesFromAnnotationsAlgorithm.getFillColor() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromExpressionsAlgorithm.getFillColor() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromTableAlgorithm.getFillColor() |
OptionalColorParameter |
ChangeRoiPropertiesAlgorithm.getFillColor() |
MeasurementColumn |
ColorRoiByStatisticsAlgorithm.getFillMeasurement() |
int |
OutlineRoiConcaveHullMoreiraSantosAlgorithm.getkMeansK() |
OptionalTextAnnotationNameParameter |
ChangeRoiPropertiesFromAnnotationsAlgorithm.getLineColor() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromExpressionsAlgorithm.getLineColor() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromTableAlgorithm.getLineColor() |
OptionalColorParameter |
ChangeRoiPropertiesAlgorithm.getLineColor() |
MeasurementColumn |
ColorRoiByStatisticsAlgorithm.getLineMeasurement() |
OptionalTextAnnotationNameParameter |
ChangeRoiPropertiesFromAnnotationsAlgorithm.getLineWidth() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromExpressionsAlgorithm.getLineWidth() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromTableAlgorithm.getLineWidth() |
OptionalDoubleParameter |
ChangeRoiPropertiesAlgorithm.getLineWidth() |
OptionalColorMapParameter |
ColorRoiByNameAlgorithm.getMapFillColor() |
OptionalColorMapParameter |
ColorRoiByStatisticsAlgorithm.getMapFillColor() |
OptionalColorMapParameter |
ColorRoiByNameAlgorithm.getMapLineColor() |
OptionalColorMapParameter |
ColorRoiByStatisticsAlgorithm.getMapLineColor() |
ImageStatisticsSetParameter |
EnlargeShrinkRoiAlgorithm.getMeasurements() |
ImageStatisticsSetParameter |
ChangeRoiPropertiesFromExpressionsAlgorithm.getMeasurements() |
ImageStatisticsSetParameter |
ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm.getMeasurements() |
RoiFloodFillAlgorithm.Mode |
RoiFloodFillAlgorithm.getMode() |
LogicalOperation |
RoiCalculatorAlgorithm.getOperation() |
RoiOutline |
OutlineRoiAlgorithm.getOutline() |
JIPipeExpressionParameter |
EnlargeShrinkRoiAlgorithm.getPixels() |
OptionalTextAnnotationNameParameter |
ChangeRoiPropertiesFromAnnotationsAlgorithm.getPositionC() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromExpressionsAlgorithm.getPositionC() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromTableAlgorithm.getPositionC() |
OptionalIntegerParameter |
ChangeRoiPropertiesAlgorithm.getPositionC() |
OptionalTextAnnotationNameParameter |
ChangeRoiPropertiesFromAnnotationsAlgorithm.getPositionT() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromExpressionsAlgorithm.getPositionT() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromTableAlgorithm.getPositionT() |
OptionalIntegerParameter |
ChangeRoiPropertiesAlgorithm.getPositionT() |
OptionalTextAnnotationNameParameter |
ChangeRoiPropertiesFromAnnotationsAlgorithm.getPositionX() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromExpressionsAlgorithm.getPositionX() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromTableAlgorithm.getPositionX() |
OptionalDoubleParameter |
ChangeRoiPropertiesAlgorithm.getPositionX() |
OptionalTextAnnotationNameParameter |
ChangeRoiPropertiesFromAnnotationsAlgorithm.getPositionY() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromExpressionsAlgorithm.getPositionY() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromTableAlgorithm.getPositionY() |
OptionalDoubleParameter |
ChangeRoiPropertiesAlgorithm.getPositionY() |
OptionalTextAnnotationNameParameter |
ChangeRoiPropertiesFromAnnotationsAlgorithm.getPositionZ() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromExpressionsAlgorithm.getPositionZ() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromTableAlgorithm.getPositionZ() |
OptionalIntegerParameter |
ChangeRoiPropertiesAlgorithm.getPositionZ() |
OptionalTextAnnotationNameParameter |
ChangeRoiPropertiesFromAnnotationsAlgorithm.getRoiName() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromExpressionsAlgorithm.getRoiName() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromTableAlgorithm.getRoiName() |
OptionalStringParameter |
ChangeRoiPropertiesAlgorithm.getRoiName() |
JIPipeExpressionParameter |
ChangeRoiPropertiesFromTableAlgorithm.getRowSelector() |
OptionalTextAnnotationNameParameter |
ChangeRoiPropertiesFromAnnotationsAlgorithm.getScaleX() |
double |
ScaleRoiAlgorithm.getScaleX() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromExpressionsAlgorithm.getScaleX() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromTableAlgorithm.getScaleX() |
OptionalDoubleParameter |
ChangeRoiPropertiesAlgorithm.getScaleX() |
OptionalTextAnnotationNameParameter |
ChangeRoiPropertiesFromAnnotationsAlgorithm.getScaleY() |
double |
ScaleRoiAlgorithm.getScaleY() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromExpressionsAlgorithm.getScaleY() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromTableAlgorithm.getScaleY() |
OptionalDoubleParameter |
ChangeRoiPropertiesAlgorithm.getScaleY() |
HyperstackDimension |
ReorderRoiDimensionsAlgorithm.getTargetC() |
HyperstackDimension |
ReorderRoiDimensionsAlgorithm.getTargetT() |
HyperstackDimension |
ReorderRoiDimensionsAlgorithm.getTargetZ() |
double |
RoiFloodFillAlgorithm.getTolerance() |
boolean |
RoiCalculatorAlgorithm.isApplyPerChannel() |
boolean |
RoiCalculatorAlgorithm.isApplyPerFrame() |
boolean |
RoiCalculatorAlgorithm.isApplyPerSlice() |
boolean |
CropRoiListAlgorithm.isCropC() |
boolean |
CropRoiListAlgorithm.isCropT() |
boolean |
CropRoiListAlgorithm.isCropXY() |
boolean |
CropRoiListAlgorithm.isCropZ() |
boolean |
FlattenRoiAlgorithm.isFlattenC() |
boolean |
FlattenRoiAlgorithm.isFlattenT() |
boolean |
FlattenRoiAlgorithm.isFlattenZ() |
boolean |
EnlargeShrinkRoiAlgorithm.isMeasureInPhysicalUnits() |
boolean |
ChangeRoiPropertiesFromExpressionsAlgorithm.isMeasureInPhysicalUnits() |
boolean |
ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm.isMeasureInPhysicalUnits() |
boolean |
OutlineRoiConcaveHullMoreiraSantosAlgorithm.isSkipInvalidInputs() |
boolean |
RoiFloodFillAlgorithm.isSmooth() |
boolean |
RoiCalculatorAlgorithm.isSplitAfterwards() |
| Modifier and Type | Class and Description |
|---|---|
class |
ExtractROIMetadataAlgorithm |
class |
RemoveROIMetadataAlgorithm |
class |
SetRoiMetadataByStatisticsAlgorithm
Wrapper around
RoiManager |
class |
SetROIMetadataFromTableAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
JIPipeExpressionParameter |
RemoveROIMetadataAlgorithm.getFilterExpression() |
OptionalStringParameter |
ExtractROIMetadataAlgorithm.getIndexColumn() |
String |
SetRoiMetadataByStatisticsAlgorithm.MetadataProperty.getKey() |
ImageStatisticsSetParameter |
SetRoiMetadataByStatisticsAlgorithm.getMeasurements() |
ParameterCollectionList |
SetRoiMetadataByStatisticsAlgorithm.getMetadataGenerators() |
OptionalStringParameter |
ExtractROIMetadataAlgorithm.getNameColumn() |
TableColumnSourceExpressionParameter |
SetROIMetadataFromTableAlgorithm.getRoiIndexColumn() |
JIPipeExpressionParameter |
SetRoiMetadataByStatisticsAlgorithm.MetadataProperty.getValue() |
boolean |
SetROIMetadataFromTableAlgorithm.isClearBeforeWrite() |
boolean |
SetRoiMetadataByStatisticsAlgorithm.isClearBeforeWrite() |
boolean |
SetROIMetadataFromTableAlgorithm.isIgnoreMissingRoiIndices() |
boolean |
SetRoiMetadataByStatisticsAlgorithm.isMeasureInPhysicalUnits() |
| Modifier and Type | Class and Description |
|---|---|
class |
RegisterRoiToImageByBrightnessAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
JIPipeExpressionParameter |
RegisterRoiToImageByBrightnessAlgorithm.getRotationRange() |
JIPipeExpressionParameter |
RegisterRoiToImageByBrightnessAlgorithm.getScaleRange() |
int |
RegisterRoiToImageByBrightnessAlgorithm.getXyStep() |
| Modifier and Type | Class and Description |
|---|---|
class |
SortAndExtractRoiByStatisticsAlgorithm
Deprecated.
|
class |
SortAndExtractRoiByStatisticsAlgorithm2
Wrapper around
RoiManager |
class |
SortRoiListByExpressionsAndMeasurementsAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
StringQueryExpression |
SortRoiListByExpressionsAndMeasurementsAlgorithm.getExpression() |
OptionalColorMapParameter |
SortAndExtractRoiByStatisticsAlgorithm2.getMapFillColor() |
OptionalColorMapParameter |
SortAndExtractRoiByStatisticsAlgorithm.getMapFillColor()
Deprecated.
|
OptionalColorMapParameter |
SortAndExtractRoiByStatisticsAlgorithm2.getMapLineColor() |
OptionalColorMapParameter |
SortAndExtractRoiByStatisticsAlgorithm.getMapLineColor()
Deprecated.
|
ImageStatisticsSetParameter |
SortRoiListByExpressionsAndMeasurementsAlgorithm.getMeasurements() |
OptionalIntegerRange |
SortAndExtractRoiByStatisticsAlgorithm2.getSelectedIndices() |
NumericFunctionExpression |
SortAndExtractRoiByStatisticsAlgorithm.getSelection()
Deprecated.
|
MeasurementColumnSortOrder.List |
SortAndExtractRoiByStatisticsAlgorithm2.getSortOrderList() |
MeasurementColumnSortOrder.List |
SortAndExtractRoiByStatisticsAlgorithm.getSortOrderList()
Deprecated.
|
boolean |
SortAndExtractRoiByStatisticsAlgorithm2.isAutoClamp() |
boolean |
SortAndExtractRoiByStatisticsAlgorithm.isAutoClamp()
Deprecated.
|
boolean |
SortRoiListByExpressionsAndMeasurementsAlgorithm.isMeasureInPhysicalUnits() |
boolean |
SortRoiListByExpressionsAndMeasurementsAlgorithm.isReverseSortOrder() |
| Modifier and Type | Class and Description |
|---|---|
class |
ExplodeRoiAlgorithm
Wrapper around
RoiManager |
class |
SplitRoiAlgorithm
Wrapper around
RoiManager |
class |
SplitRoiConnectedComponentsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ClassicWatershedSegmentationAlgorithm |
class |
RidgeDetector2DAlgorithm |
class |
SeededWatershedSegmentationAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
Neighborhood2D3D |
ClassicWatershedSegmentationAlgorithm.getConnectivity() |
Neighborhood2D3D |
SeededWatershedSegmentationAlgorithm.getConnectivity() |
double |
RidgeDetector2DAlgorithm.getContrastHigh() |
double |
RidgeDetector2DAlgorithm.getContrastLow() |
OptionalDoubleParameter |
ClassicWatershedSegmentationAlgorithm.getCustomHMax() |
OptionalDoubleParameter |
ClassicWatershedSegmentationAlgorithm.getCustomHMin() |
double |
RidgeDetector2DAlgorithm.getLineWidth() |
double |
RidgeDetector2DAlgorithm.getLowerThreshold() |
double |
RidgeDetector2DAlgorithm.getMaxLength() |
double |
RidgeDetector2DAlgorithm.getMinLength() |
de.biomedical_imaging.ij.steger.OverlapOption |
RidgeDetector2DAlgorithm.getOverlapResolution() |
double |
RidgeDetector2DAlgorithm.getSigma() |
ImageROITargetArea |
ClassicWatershedSegmentationAlgorithm.getTargetArea() |
ImageROITargetArea |
SeededWatershedSegmentationAlgorithm.getTargetArea() |
double |
RidgeDetector2DAlgorithm.getUpperThreshold() |
boolean |
ClassicWatershedSegmentationAlgorithm.isApplyPerSlice() |
boolean |
SeededWatershedSegmentationAlgorithm.isApplyPerSlice() |
boolean |
RidgeDetector2DAlgorithm.isDarkLine() |
boolean |
RidgeDetector2DAlgorithm.isDoCorrectPosition() |
boolean |
RidgeDetector2DAlgorithm.isDoEstimateWidth() |
boolean |
RidgeDetector2DAlgorithm.isDoExtendLine() |
boolean |
RidgeDetector2DAlgorithm.isEstimateHighThreshold() |
boolean |
RidgeDetector2DAlgorithm.isEstimateLowThreshold() |
boolean |
RidgeDetector2DAlgorithm.isEstimateSigma() |
boolean |
SeededWatershedSegmentationAlgorithm.isGetDams() |
| Modifier and Type | Class and Description |
|---|---|
class |
LaplacianSharpen2DAlgorithm
Wrapper around
ImageProcessor |
| Modifier and Type | Class and Description |
|---|---|
class |
AverageKeyValueThresholdStatisticsGenerator |
class |
FastKeyValueThresholdStatisticsGenerator |
class |
HistogramGenerator
Algorithm that generates
ResultsTableData as histogram |
class |
KeyValueAveragesGenerator |
class |
KeyValueHistogramGenerator |
class |
KeyValueThresholdPartitionAveragesGenerator |
class |
KeyValueThresholdPartitionGenerator |
class |
KeyValueThresholdStatisticsGenerator |
| Modifier and Type | Method and Description |
|---|---|
OptionalStringParameter |
KeyValueThresholdPartitionAveragesGenerator.getClass0CountColumnName() |
OptionalStringParameter |
KeyValueThresholdPartitionAveragesGenerator.getClass0MeanColumnName() |
OptionalStringParameter |
KeyValueThresholdPartitionAveragesGenerator.getClass0SumColumnName() |
OptionalStringParameter |
KeyValueThresholdPartitionAveragesGenerator.getClass1CountColumnName() |
OptionalStringParameter |
KeyValueThresholdPartitionAveragesGenerator.getClass1MeanColumnName() |
OptionalStringParameter |
KeyValueThresholdPartitionAveragesGenerator.getClass1SumColumnName() |
OptionalStringParameter |
KeyValueAveragesGenerator.getCountColumnName() |
ParameterCollectionList |
KeyValueThresholdPartitionGenerator.getGeneratedColumns() |
JIPipeExpressionParameter |
KeyValueHistogramGenerator.getIntegrationFunction() |
JIPipeExpressionParameter |
KeyValueThresholdStatisticsGenerator.getIntegrationFunctionBackground() |
TableColumnIntegrationParameter |
FastKeyValueThresholdStatisticsGenerator.getIntegrationFunctionBackground() |
JIPipeExpressionParameter |
KeyValueThresholdStatisticsGenerator.getIntegrationFunctionForeground() |
TableColumnIntegrationParameter |
FastKeyValueThresholdStatisticsGenerator.getIntegrationFunctionForeground() |
OptionalStringParameter |
KeyValueThresholdPartitionAveragesGenerator.getKeyColumnName() |
OptionalStringParameter |
KeyValueAveragesGenerator.getKeyColumnName() |
OptionalStringParameter |
KeyValueAveragesGenerator.getMeanColumnName() |
HistogramGenerator.MultiChannelMode |
HistogramGenerator.getMultiChannelMode() |
String |
KeyValueThresholdPartitionGenerator.GeneratedColumn.getName() |
String |
AverageKeyValueThresholdStatisticsGenerator.getOutputBackgroundColumn() |
String |
KeyValueThresholdStatisticsGenerator.getOutputBackgroundColumn() |
String |
FastKeyValueThresholdStatisticsGenerator.getOutputBackgroundColumn() |
String |
AverageKeyValueThresholdStatisticsGenerator.getOutputForegroundColumn() |
String |
KeyValueThresholdStatisticsGenerator.getOutputForegroundColumn() |
String |
FastKeyValueThresholdStatisticsGenerator.getOutputForegroundColumn() |
String |
KeyValueHistogramGenerator.getOutputKeyColumn() |
String |
AverageKeyValueThresholdStatisticsGenerator.getOutputThresholdColumn() |
String |
KeyValueThresholdStatisticsGenerator.getOutputThresholdColumn() |
String |
FastKeyValueThresholdStatisticsGenerator.getOutputThresholdColumn() |
String |
KeyValueHistogramGenerator.getOutputValueColumn() |
String |
HistogramGenerator.getSliceAnnotation() |
ImageROITargetArea |
KeyValueThresholdPartitionAveragesGenerator.getSourceArea() |
ImageROITargetArea |
KeyValueThresholdPartitionGenerator.getSourceArea() |
ImageROITargetArea |
KeyValueHistogramGenerator.getSourceArea() |
ImageROITargetArea |
KeyValueAveragesGenerator.getSourceArea() |
OptionalStringParameter |
KeyValueAveragesGenerator.getSumColumnName() |
JIPipeExpressionParameter |
KeyValueThresholdPartitionGenerator.GeneratedColumn.getValue() |
boolean |
HistogramGenerator.isApplyPerSlice() |
boolean |
KeyValueHistogramGenerator.isCumulative() |
boolean |
AverageKeyValueThresholdStatisticsGenerator.isInvertThreshold() |
boolean |
KeyValueThresholdStatisticsGenerator.isInvertThreshold() |
boolean |
FastKeyValueThresholdStatisticsGenerator.isInvertThreshold() |
boolean |
KeyValueHistogramGenerator.isNormalize() |
boolean |
HistogramGenerator.isNormalize() |
boolean |
KeyValueThresholdPartitionGenerator.GeneratedColumn.isSkipEmpty() |
| Modifier and Type | Class and Description |
|---|---|
class |
AutoThreshold2DAlgorithm
Thresholding node that thresholds via an auto threshold
|
class |
BrightSpotsSegmentation2DAlgorithm
Applies Bright spots segmentation
|
class |
CustomAutoThreshold2D16UAlgorithm
Thresholding node that thresholds via an auto threshold
|
class |
CustomAutoThreshold2D16Uv2Algorithm
Thresholding node that thresholds via an auto threshold
|
class |
CustomAutoThreshold2D32FAlgorithm
Thresholding node that thresholds via an auto threshold
|
class |
CustomAutoThreshold2D32Fv2Algorithm
Thresholding node that thresholds via an auto threshold
|
class |
CustomAutoThreshold2D8UAlgorithm
Thresholding node that thresholds via an auto threshold
|
class |
CustomAutoThreshold2D8Uv2Algorithm
Thresholding node that thresholds via an auto threshold
|
class |
HessianSegmentation2DAlgorithm
Segments using a Hessian
|
class |
InternalGradientSegmentation2DAlgorithm
Internal gradient segmenter
|
class |
ManualThreshold16U2DAlgorithm
Wrapper around
ImageProcessor |
class |
ManualThreshold32F2DAlgorithm
Wrapper around
ImageProcessor |
class |
ManualThreshold8U2DAlgorithm
Wrapper around
ImageProcessor |
class |
PercentileThreshold8U2DAlgorithm
Wrapper around
ImageProcessor |
class |
ThresholdByAnnotation2DAlgorithm
Wrapper around
ImageProcessor |
| Modifier and Type | Class and Description |
|---|---|
class |
ColorThresholdExpression2D |
class |
ManualHSBThreshold2DAlgorithm |
class |
ManualLABThreshold2DAlgorithm |
class |
ManualRGBThreshold2DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
IterativeThresholdByROIStatistics2DAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
IterativeThresholdByROIStatistics2DAlgorithm.FilteringParameters |
IterativeThresholdByROIStatistics2DAlgorithm.getFilteringParameters() |
ImageStatisticsSetParameter |
IterativeThresholdByROIStatistics2DAlgorithm.getMeasurements() |
JIPipeExpressionParameter |
IterativeThresholdByROIStatistics2DAlgorithm.FilteringParameters.getRoiFilterExpression() |
JIPipeExpressionParameter |
IterativeThresholdByROIStatistics2DAlgorithm.ScoreParameters.getScoreAccumulationExpression() |
OptionalJIPipeExpressionParameter |
IterativeThresholdByROIStatistics2DAlgorithm.ScoreParameters.getScoreExpression() |
IterativeThresholdByROIStatistics2DAlgorithm.ScoreParameters |
IterativeThresholdByROIStatistics2DAlgorithm.getScoreParameters() |
OptionalTextAnnotationNameParameter |
IterativeThresholdByROIStatistics2DAlgorithm.getThresholdAnnotation() |
JIPipeTextAnnotationMergeMode |
IterativeThresholdByROIStatistics2DAlgorithm.getThresholdAnnotationStrategy() |
JIPipeExpressionParameter |
IterativeThresholdByROIStatistics2DAlgorithm.getThresholdCombinationExpression() |
JIPipeExpressionParameter |
IterativeThresholdByROIStatistics2DAlgorithm.FilteringParameters.getThresholdCriteriaExpression() |
IntegerRange |
IterativeThresholdByROIStatistics2DAlgorithm.getThresholds() |
boolean |
IterativeThresholdByROIStatistics2DAlgorithm.isExcludeEdgeROIs() |
boolean |
IterativeThresholdByROIStatistics2DAlgorithm.isMeasureInPhysicalUnits() |
| Modifier and Type | Class and Description |
|---|---|
class |
BernsenLocalAutoThreshold2DAlgorithm
Segmenter node that thresholds via an auto threshold
Based on code from
fiji.threshold.Auto_Local_Threshold |
class |
ContrastLocalAutoThreshold2DAlgorithm
Segmenter node that thresholds via an auto threshold
Based on code from
fiji.threshold.Auto_Local_Threshold |
class |
LocalAutoThreshold2DAlgorithm
Segmenter node that thresholds via an auto threshold
Based on code from
fiji.threshold.Auto_Local_Threshold |
class |
NiblackLocalAutoThreshold2DAlgorithm
Segmenter node that thresholds via an auto threshold
Based on code from
fiji.threshold.Auto_Local_Threshold |
class |
PhansalkarLocalAutoThreshold2DAlgorithm
Segmenter node that thresholds via an auto threshold
Based on code from
fiji.threshold.Auto_Local_Threshold |
class |
SauvolaLocalAutoThreshold2DAlgorithm
Segmenter node that thresholds via an auto threshold
Based on code from
fiji.threshold.Auto_Local_Threshold |
| Modifier and Type | Method and Description |
|---|---|
int |
BernsenLocalAutoThreshold2DAlgorithm.getContrastThreshold() |
double |
PhansalkarLocalAutoThreshold2DAlgorithm.getK() |
double |
SauvolaLocalAutoThreshold2DAlgorithm.getK() |
double |
NiblackLocalAutoThreshold2DAlgorithm.getK() |
LocalAutoThreshold2DAlgorithm.Method |
LocalAutoThreshold2DAlgorithm.getMethod() |
int |
NiblackLocalAutoThreshold2DAlgorithm.getModifier() |
int |
LocalAutoThreshold2DAlgorithm.getModifier() |
double |
PhansalkarLocalAutoThreshold2DAlgorithm.getP() |
double |
PhansalkarLocalAutoThreshold2DAlgorithm.getQ() |
double |
PhansalkarLocalAutoThreshold2DAlgorithm.getR() |
double |
SauvolaLocalAutoThreshold2DAlgorithm.getR() |
int |
PhansalkarLocalAutoThreshold2DAlgorithm.getRadius() |
int |
SauvolaLocalAutoThreshold2DAlgorithm.getRadius() |
int |
BernsenLocalAutoThreshold2DAlgorithm.getRadius() |
int |
NiblackLocalAutoThreshold2DAlgorithm.getRadius() |
int |
ContrastLocalAutoThreshold2DAlgorithm.getRadius() |
int |
LocalAutoThreshold2DAlgorithm.getRadius() |
boolean |
PhansalkarLocalAutoThreshold2DAlgorithm.isDarkBackground() |
boolean |
SauvolaLocalAutoThreshold2DAlgorithm.isDarkBackground() |
boolean |
BernsenLocalAutoThreshold2DAlgorithm.isDarkBackground() |
boolean |
NiblackLocalAutoThreshold2DAlgorithm.isDarkBackground() |
boolean |
ContrastLocalAutoThreshold2DAlgorithm.isDarkBackground() |
boolean |
LocalAutoThreshold2DAlgorithm.isDarkBackground() |
| Modifier and Type | Method and Description |
|---|---|
Color |
MontageCreator.CanvasParameters.getBorderColor() |
int |
MontageCreator.CanvasParameters.getBorderSize() |
Anchor |
MontageCreator.CanvasParameters.getCanvasAnchor() |
Color |
MontageCreator.CanvasParameters.getCanvasBackgroundColor() |
MontageCreator.CanvasParameters |
MontageCreator.getCanvasParameters() |
OptionalIntegerParameter |
MontageCreator.getForceNumColumns() |
OptionalIntegerParameter |
MontageCreator.getForceNumRows() |
OrientationJGradientOperator |
OrientationJStructureTensorParameters.getGradient() |
MontageCreator.ImageParameters |
MontageCreator.getImageParameters() |
InterpolationMethod |
MontageCreator.ImageParameters.getInterpolationMethod() |
OptionalColorParameter |
MontageCreator.LabelParameters.getLabelBackground() |
JIPipeExpressionParameter |
MontageCreator.getLabelExpression() |
FontFamilyParameter |
MontageCreator.LabelParameters.getLabelFontFamily() |
Color |
MontageCreator.LabelParameters.getLabelForeground() |
Anchor |
MontageCreator.LabelParameters.getLabelLocation() |
MontageCreator.LabelParameters |
MontageCreator.getLabelParameters() |
int |
MontageCreator.LabelParameters.getLabelSize() |
int |
OrientationJStructureTensorParameters.getLocalWindowSigma() |
ScaleMode |
MontageCreator.ImageParameters.getScaleMode() |
OptionalJIPipeExpressionParameter |
MontageCreator.getSortingLabelExpression() |
ImageROITargetArea |
SimpleImageAndRoiIteratingAlgorithm.getTargetArea() |
JIPipeExpressionParameter |
MontageCreator.getTileHeight() |
JIPipeExpressionParameter |
MontageCreator.getTileWidth() |
boolean |
MontageCreator.LabelParameters.isAvoidLabelOnImage() |
boolean |
MontageCreator.ImageParameters.isAvoidScaling() |
boolean |
MontageCreator.LabelParameters.isDrawLabel() |
boolean |
MontageCreator.isForceRGB() |
boolean |
MontageCreator.LabelParameters.isLimitWithEllipsis() |
boolean |
MontageCreator.isRgbUseRender() |
| Modifier and Type | Method and Description |
|---|---|
OMETIFFCompression |
ImageJDataTypesApplicationSettings.getBioFormatsCompression() |
boolean |
ImageJDataTypesApplicationSettings.isSaveRGBWithImageJ() |
boolean |
ImageJDataTypesApplicationSettings.isUseBioFormats() |
| Modifier and Type | Class and Description |
|---|---|
class |
ApplyDisplayContrastAlgorithm |
class |
DisplayRangeCalibrationAlgorithm |
class |
ExtractRoi2DFromOMEImageAlgorithm
Loads ROI data from a file via IJ.openFile()
|
class |
SetBioFormatsExporterSettings |
| Modifier and Type | Method and Description |
|---|---|
ImageJCalibrationMode |
DisplayRangeCalibrationAlgorithm.getCalibrationMode() |
double |
DisplayRangeCalibrationAlgorithm.getCustomMax() |
double |
DisplayRangeCalibrationAlgorithm.getCustomMin() |
OMEExporterSettings |
SetBioFormatsExporterSettings.getExporterSettings() |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateDataWithImagePropertiesAlgorithm
Adds data annotations that contain the image properties
|
class |
BioFormatsAnnotatorAlgorithm
BioFormats importer wrapper
|
class |
ImagePropertiesToAnnotationAlgorithm
Adds data annotations that contain the image properties
|
| Modifier and Type | Class and Description |
|---|---|
class |
ToHSBColorSpaceConverterAlgorithm |
class |
ToLABColorSpaceConverterAlgorithm |
class |
ToRGBColorSpaceConverterAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
boolean |
ColorSpaceConverterAlgorithm.isReinterpret() |
| Modifier and Type | Class and Description |
|---|---|
class |
BioFormatsExporter2Algorithm |
class |
BioFormatsExporterAlgorithm
Deprecated.
|
class |
BioFormatsImporterAlgorithm
BioFormats importer wrapper
|
class |
ExportImagePlusAsOMEZARRAlgorithm |
class |
ImportImageJSampleAlgorithm |
class |
ImportImagePlusAlgorithm
Loads an image data from a file via IJ.openFile()
|
class |
ImportLUTAsRGBFromFileAlgorithm |
class |
ImportOMEZARRFromURIAsImagePlusAlgorithm |
class |
ImportOMEZARRFromZipDirectoryAsImagePlusAlgorithm |
class |
ImportResultsTableAlgorithm
Imports
ResultsTableData from a file |
class |
ImportRoi2DAlgorithm
Loads ROI data from a file via IJ.openFile()
|
| Modifier and Type | Method and Description |
|---|---|
OptionalJIPipeExpressionParameter |
ExportImagePlusAsOMEZARRAlgorithm.getChunkSizeExpression() |
OMEColorMode |
BioFormatsImporterAlgorithm.getColorMode() |
ExportImagePlusAsOMEZARRAlgorithm.Compression |
ExportImagePlusAsOMEZARRAlgorithm.getCompression() |
RectangleList |
BioFormatsImporterAlgorithm.getCropRegions() |
OptionalJIPipeExpressionParameter |
ImportOMEZARRFromURIAsImagePlusAlgorithm.getDatasetFilter() |
OptionalJIPipeExpressionParameter |
ImportOMEZARRFromZipDirectoryAsImagePlusAlgorithm.getDatasetFilter() |
OptionalTextAnnotationNameParameter |
ImportOMEZARRFromURIAsImagePlusAlgorithm.getDatasetNameAnnotation() |
OptionalTextAnnotationNameParameter |
ImportOMEZARRFromZipDirectoryAsImagePlusAlgorithm.getDatasetNameAnnotation() |
JIPipeDataByMetadataExporter |
BioFormatsExporterAlgorithm.getExporter()
Deprecated.
|
OMEExporterSettings |
BioFormatsExporterAlgorithm.getExporterSettings()
Deprecated.
|
OMEExporterSettings |
BioFormatsExporter2Algorithm.getExporterSettings() |
ImportResultsTableAlgorithm.FileFormat |
ImportResultsTableAlgorithm.getFileFormat() |
DataExportExpressionParameter |
ExportImagePlusAsOMEZARRAlgorithm.getFilePath() |
DataExportExpressionParameter |
BioFormatsExporter2Algorithm.getFilePath() |
JIPipeDataInfoRef |
ImportImagePlusAlgorithm.getGeneratedImageType() |
Path |
BioFormatsExporterAlgorithm.getOutputDirectory()
Deprecated.
|
ExportImagePlusAsOMEZARRAlgorithm.OutputFormat |
ExportImagePlusAsOMEZARRAlgorithm.getOutputFormat() |
ImportImageJSampleAlgorithm.Sample |
ImportImageJSampleAlgorithm.getSample() |
OptionalTextAnnotationNameParameter |
BioFormatsImporterAlgorithm.getSeriesAnnotation() |
IntegerList |
BioFormatsImporterAlgorithm.getSeriesToImport() |
OptionalTextAnnotationNameParameter |
ImportResultsTableAlgorithm.getSheetNameAnnotation() |
StringList |
ImportResultsTableAlgorithm.getSheets() |
ome.xml.model.enums.DimensionOrder |
BioFormatsImporterAlgorithm.getStackOrder() |
OptionalTextAnnotationNameParameter |
BioFormatsImporterAlgorithm.getTitleAnnotation() |
OptionalTextAnnotationNameParameter |
ImportImagePlusAlgorithm.getTitleAnnotation() |
boolean |
BioFormatsImporterAlgorithm.isAutoScale() |
boolean |
BioFormatsImporterAlgorithm.isConcatenate() |
boolean |
ExportImagePlusAsOMEZARRAlgorithm.isCreatePyramid() |
boolean |
BioFormatsImporterAlgorithm.isCrop() |
boolean |
BioFormatsImporterAlgorithm.isExtractRois() |
boolean |
ImportImagePlusAlgorithm.isForceNativeImport() |
boolean |
ImportResultsTableAlgorithm.isIgnoreMissingSheets() |
boolean |
BioFormatsImporterAlgorithm.isOpenAllSeries() |
boolean |
ImportImagePlusAlgorithm.isRemoveLut() |
boolean |
ImportImagePlusAlgorithm.isRemoveOverlay() |
boolean |
BioFormatsImporterAlgorithm.isSplitChannels() |
boolean |
BioFormatsImporterAlgorithm.isSplitFocalPlanes() |
boolean |
BioFormatsImporterAlgorithm.isSplitTimePoints() |
boolean |
BioFormatsImporterAlgorithm.isStitchTiles() |
boolean |
BioFormatsImporterAlgorithm.isSwapDimensions() |
void |
BioFormatsImporterAlgorithm.setToExample(JIPipeWorkbench parent) |
| Modifier and Type | Class and Description |
|---|---|
class |
ImagePlusDataFromImageWindowImageJImporter |
class |
ImagePlusDataToImageWindowImageJExporter |
class |
OMEImageFromImageWindowImageJImporter |
class |
OMEImageToImageWindowImageJExporter |
class |
RoiManagerImageJExporter |
class |
RoiManagerImageJImporter |
| Modifier and Type | Class and Description |
|---|---|
class |
ImageTypeConverter
Converts ImageJ data type into each other
|
| Modifier and Type | Method and Description |
|---|---|
JIPipeDataInfoRef |
ImageTypeConverter.getOutputType() |
| Modifier and Type | Class and Description |
|---|---|
class |
ImagePlusData
ImageJ image
|
class |
LUTData |
class |
OMEImageData
Data that is a representation of all information saved in Bio-Formats
|
class |
ROI2DListData
Contains
Roi |
| Modifier and Type | Class and Description |
|---|---|
class |
ImagePlusColorData
A colored image without dimension.
|
class |
ImagePlusColorHSBData
HSV colored image without dimension.
|
class |
ImagePlusColorLABData
LAB colored image without dimension.
|
class |
ImagePlusColorRGBData
RGB colored image without dimension.
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImagePlus2DData
2D image
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImagePlus2DColorData
A colored image without dimension.
|
class |
ImagePlus2DColorHSBData
RGB colored 2D image
|
class |
ImagePlus2DColorLABData
RGB colored 2D image
|
class |
ImagePlus2DColorRGBData
RGB colored 2D image
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImagePlus2DGreyscale16UData
16-bit greyscale 2D image
|
class |
ImagePlus2DGreyscale32FData
32 bit float greyscale 2D image
|
class |
ImagePlus2DGreyscale8UData
8-bit greyscale 2D image
|
class |
ImagePlus2DGreyscaleData
Greyscale 2D image
|
class |
ImagePlus2DGreyscaleMaskData
8-bit mask 2D image
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImagePlus3DData
3D image
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImagePlus3DColorData
A colored image without dimension.
|
class |
ImagePlus3DColorHSBData
RGB color 3D image
|
class |
ImagePlus3DColorLABData
RGB color 3D image
|
class |
ImagePlus3DColorRGBData
RGB color 3D image
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImagePlus3DGreyscale16UData
16-bit greyscale 3D image
|
class |
ImagePlus3DGreyscale32FData
32-bit floating point greyscale 3D image
|
class |
ImagePlus3DGreyscale8UData
8-bit greyscale 3D image
|
class |
ImagePlus3DGreyscaleData
Greyscale 3D image
|
class |
ImagePlus3DGreyscaleMaskData
8-bit mask 3D image
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImagePlus4DData
4D image
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImagePlus4DColorData
A colored image without dimension.
|
class |
ImagePlus4DColorHSBData
RGB color 4D image
|
class |
ImagePlus4DColorLABData
RGB color 4D image
|
class |
ImagePlus4DColorRGBData
RGB color 4D image
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImagePlus4DGreyscale16UData
16-bit greyscale 4D image
|
class |
ImagePlus4DGreyscale32FData
32-bit floating point greyscale 4D image
|
class |
ImagePlus4DGreyscale8UData
8-bit greyscale 4D image
|
class |
ImagePlus4DGreyscaleData
Greyscale 4D image
|
class |
ImagePlus4DGreyscaleMaskData
Mask 4D image
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImagePlus5DData
5D image
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImagePlus5DColorData
A colored image without dimension.
|
class |
ImagePlus5DColorHSBData
RGB color 5D image
|
class |
ImagePlus5DColorLABData
RGB color 5D image
|
class |
ImagePlus5DColorRGBData
RGB color 5D image
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImagePlus5DGreyscale16UData
16-bit greyscale 5D image
|
class |
ImagePlus5DGreyscale32FData
32-bit floating point greyscale image
|
class |
ImagePlus5DGreyscale8UData
8-bit greyscale 5D image
|
class |
ImagePlus5DGreyscaleData
Greyscale 5D image
|
class |
ImagePlus5DGreyscaleMaskData
Mask 5D image
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImagePlusFFT2DData
2D image in frequency space
|
class |
ImagePlusFFT3DData
3D image in frequency space
|
class |
ImagePlusFFT4DData
4D image in frequency space
|
class |
ImagePlusFFT5DData
5D image in frequency space
|
class |
ImagePlusFFTData
Image in frequency space
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImagePlusGreyscale16UData
16-bit greyscale image without dimension.
|
class |
ImagePlusGreyscale32FData
32 bit float greyscale image without dimension.
|
class |
ImagePlusGreyscale8UData
8-bit greyscale image without dimension.
|
class |
ImagePlusGreyscaleData
Greyscale image without dimension.
|
class |
ImagePlusGreyscaleMaskData
8-bit mask without dimension.
|
| Modifier and Type | Method and Description |
|---|---|
OMETIFFCompression |
OMEExporterSettings.getCompression() |
ome.xml.model.enums.DimensionOrder |
OMEExporterSettings.getDimensionOrder() |
boolean |
OMEExporterSettings.isNoLUT() |
boolean |
OMEExporterSettings.isPadded() |
boolean |
OMEExporterSettings.isSaveROI() |
boolean |
OMEExporterSettings.isSplitC() |
boolean |
OMEExporterSettings.isSplitT() |
boolean |
OMEExporterSettings.isSplitZ() |
| Modifier and Type | Method and Description |
|---|---|
OptionalJIPipeDataDirectoryEnvironment |
ImageSamplesApplicationSettings.getDefaultEnvironment() |
OptionalJIPipeDataDirectoryEnvironment |
ImageSamplesProjectSettings.getProjectDefaultEnvironment() |
RoiDrawer |
ImageViewerUIROI2DDisplayApplicationSettings.getRoiDrawer() |
boolean |
ImageViewerUIROI2DDisplayApplicationSettings.isRenderROIAsOverlay() |
boolean |
ImageViewerUIROI2DDisplayApplicationSettings.isShowROI() |
| Modifier and Type | Method and Description |
|---|---|
ImageStatisticsSetParameter |
MeasurementDrawerPlugin2D.Settings.getStatistics() |
boolean |
MeasurementDrawerPlugin2D.Settings.isMeasureInPhysicalUnits() |
| Modifier and Type | Method and Description |
|---|---|
ImageStatisticsSetParameter |
Measurement2DSettings.getStatistics() |
boolean |
Measurement2DSettings.isMeasureInPhysicalUnits() |
| Modifier and Type | Method and Description |
|---|---|
double |
LegacyImageViewer2DUIApplicationSettings.getDefaultAnimationFPS() |
double |
LegacyImageViewer2DUIApplicationSettings.getZoomBaseSpeed() |
double |
LegacyImageViewer2DUIApplicationSettings.getZoomDynamicSpeed() |
boolean |
LegacyImageViewer2DUIApplicationSettings.isExportAsDisplayed() |
| Modifier and Type | Class and Description |
|---|---|
class |
ImpImageData |
| Modifier and Type | Class and Description |
|---|---|
class |
ConvertImpImageToImagePlusAlgorithm |
class |
ExportImpImageAlgorithm |
class |
ImportImpImageAlgorithm |
class |
SetImpAlphaChannelAlgorithm |
class |
SplitImpAlphaChannelAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
Color |
ConvertImpImageToImagePlusAlgorithm.getCheckerboardColor1() |
Color |
ConvertImpImageToImagePlusAlgorithm.getCheckerboardColor2() |
int |
ConvertImpImageToImagePlusAlgorithm.getCheckerboardSize() |
ImpImageOutputFormat |
ExportImpImageAlgorithm.getFileFormat() |
DataExportExpressionParameter |
ExportImpImageAlgorithm.getFilePath() |
boolean |
ConvertImpImageToImagePlusAlgorithm.isCreateCheckerboard() |
boolean |
ImportImpImageAlgorithm.isGreyscaleCorrection() |
| Modifier and Type | Class and Description |
|---|---|
class |
ParametersData
Stores the parameters of an algorithm
|
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotationsToParametersAlgorithm |
class |
ConvertParametersToTableAlgorithm |
class |
DefineParametersAlgorithm
Generates
ParametersData objects |
class |
DefineParametersFromGlobalParametersAlgorithm
Generates
ParametersData objects |
class |
DefineParametersFromTableAlgorithm |
class |
DefineParametersTableAlgorithm
Generates
ParametersData objects |
class |
ExtractParametersAlgorithm |
class |
GenerateParametersFromExpressionAlgorithm |
class |
MergeParametersAlgorithm |
class |
MultiplyParametersAlgorithm |
class |
ParametersToAnnotationsAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
JIPipeTextAnnotationMergeMode |
ParametersToAnnotationsAlgorithm.getAnnotationMergeStrategy() |
ParameterCollectionList |
GenerateParametersFromExpressionAlgorithm.getColumns() |
ParameterCollectionList |
DefineParametersFromTableAlgorithm.getColumns() |
JIPipeDynamicParameterCollection |
AnnotationsToParametersAlgorithm.getExtractedParameters() |
JIPipeExpressionParameter |
DefineParametersFromGlobalParametersAlgorithm.getFilter() |
String |
GenerateParametersFromExpressionAlgorithm.Column.getKey() |
String |
DefineParametersFromTableAlgorithm.Column.getKey() |
OptionalTextAnnotationNameParameter |
ExtractParametersAlgorithm.getNodeAliasIDAnnotation() |
OptionalTextAnnotationNameParameter |
ExtractParametersAlgorithm.getNodeNameAnnotation() |
OptionalTextAnnotationNameParameter |
ExtractParametersAlgorithm.getNodeUUIDAnnotation() |
StringQueryExpression |
ExtractParametersAlgorithm.getParameterKeyFilter() |
GeneratedParameters |
DefineParametersAlgorithm.getParameters() |
ParameterTable |
DefineParametersTableAlgorithm.getParameterTable() |
TableColumnSourceExpressionParameter |
DefineParametersFromTableAlgorithm.Column.getTableColumn() |
JIPipeParameterTypeInfoRef |
GenerateParametersFromExpressionAlgorithm.Column.getType() |
JIPipeParameterTypeInfoRef |
DefineParametersFromTableAlgorithm.Column.getType() |
JIPipeExpressionParameter |
GenerateParametersFromExpressionAlgorithm.Column.getValues() |
boolean |
AnnotationsToParametersAlgorithm.isIgnoreInvalidValues() |
boolean |
GenerateParametersFromExpressionAlgorithm.Column.isValuesAreJson() |
boolean |
DefineParametersFromTableAlgorithm.Column.isValuesAreJson() |
void |
GeneratedParameters.uiImportParameterFromGraph(JIPipeWorkbench workbench) |
| Modifier and Type | Method and Description |
|---|---|
OptionalPythonEnvironment |
NapariPluginApplicationSettings.getDefaultEnvironment() |
| Modifier and Type | Method and Description |
|---|---|
OMEROCredentialsEnvironment |
OMEROPluginApplicationSettings.getDefaultCredentials() |
String |
OMEROCredentialsEnvironment.getEmail() |
String |
OMEROCredentialsEnvironment.getHost() |
PasswordParameter |
OMEROCredentialsEnvironment.getPassword() |
int |
OMEROCredentialsEnvironment.getPort() |
OMEROCredentialsEnvironment.List |
OMEROPluginApplicationSettings.getPresets() |
OptionalOMEROCredentialsEnvironment |
OMEROPluginProjectSettings.getProjectDefaultEnvironment() |
String |
OMEROCredentialsEnvironment.getUserName() |
String |
OMEROCredentialsEnvironment.getWebclientUrl() |
| Modifier and Type | Class and Description |
|---|---|
class |
OMEROAnnotationReferenceData
Data that stores a reference to an OMERO project
|
class |
OMERODatasetReferenceData |
class |
OMEROGroupReferenceData
Data that stores a reference to an OMERO project
|
class |
OMEROImageReferenceData |
class |
OMEROPlateReferenceData
Data that stores a reference to an OMERO plate
|
class |
OMEROProjectReferenceData
Data that stores a reference to an OMERO project
|
class |
OMEROScreenReferenceData
Data that stores a reference to an OMERO screen
|
class |
OMEROWellReferenceData
Data that stores a reference to an OMERO well
|
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateOMERODatasetReferenceAlgorithm |
class |
AnnotateOMEROImageReferenceAlgorithm |
class |
AnnotateOMEROPlateReferenceAlgorithm |
class |
AnnotateOMEROProjectReferenceAlgorithm |
class |
AnnotateOMEROScreenReferenceAlgorithm |
class |
AnnotateOMEROWellReferenceAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
OMERODatasetReferenceDataSource |
class |
OMEROGroupReferenceDataSource |
class |
OMEROImageReferenceDataSource |
class |
OMEROPlateReferenceDataSource |
class |
OMEROProjectReferenceDataSource |
class |
OMEROScreenReferenceDataSource |
class |
OMEROWellReferenceDataSource |
| Modifier and Type | Class and Description |
|---|---|
class |
DownloadOMEROImageAlgorithm |
class |
DownloadOMEROTableAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
OMEROCreateDatasetAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
AnnotationsToOMEROKeyValuePairExporter |
OMEROCreateDatasetAlgorithm.getKeyValuePairExporter() |
JIPipeExpressionParameter |
OMEROCreateDatasetAlgorithm.getNameGenerator() |
OptionalOMEROCredentialsEnvironment |
OMEROCreateDatasetAlgorithm.getOverrideCredentials() |
AnnotationsToOMEROTagExporter |
OMEROCreateDatasetAlgorithm.getTagExporter() |
| Modifier and Type | Class and Description |
|---|---|
class |
OMEROListDatasetImagesAlgorithm |
class |
OMEROListDatasetsAlgorithm |
class |
OMEROListGroupsAlgorithm |
class |
OMEROListPlatesAlgorithm |
class |
OMEROListProjectsAlgorithm |
class |
OMEROListScreensAlgorithm |
class |
OMEROListWellImagesAlgorithm |
class |
OMEROListWellsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
UploadOMEROImageToDatasetAlgorithm |
class |
UploadOMEROTableAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
DataExportExpressionParameter |
UploadOMEROImageToDatasetAlgorithm.getFileNameGenerator() |
DataExportExpressionParameter |
UploadOMEROTableAlgorithm.getFileNameGenerator() |
AnnotationsToOMEROKeyValuePairExporter |
UploadOMEROImageToDatasetAlgorithm.getKeyValuePairExporter() |
OptionalOMEROCredentialsEnvironment |
UploadOMEROImageToDatasetAlgorithm.getOverrideCredentials() |
OptionalOMEROCredentialsEnvironment |
UploadOMEROTableAlgorithm.getOverrideCredentials() |
AnnotationsToOMEROTagExporter |
UploadOMEROImageToDatasetAlgorithm.getTagExporter() |
| Modifier and Type | Method and Description |
|---|---|
JIPipeExpressionParameter |
OMEROKeyValuePairToAnnotationImporter.getAnnotationName() |
JIPipeExpressionParameter |
OMEROKeyValuePairToAnnotationImporter.getAnnotationValue() |
OMEColorMode |
ImageImportParameters.getColorMode() |
RectangleList |
ImageImportParameters.getCropRegions() |
JIPipeExpressionParameter |
OMEROKeyValuePairToAnnotationImporter.getFilter() |
JIPipeExpressionParameter |
AnnotationsToOMEROKeyValuePairExporter.getFilter() |
JIPipeExpressionParameter |
AnnotationsToOMEROKeyValuePairExporter.getKeyValuePairKey() |
JIPipeExpressionParameter |
AnnotationsToOMEROKeyValuePairExporter.getKeyValuePairValue() |
ome.xml.model.enums.DimensionOrder |
ImageImportParameters.getStackOrder() |
OptionalTextAnnotationNameParameter |
AnnotationsToOMEROTagExporter.getTagListAnnotation() |
OptionalTextAnnotationNameParameter |
OMEROTagToAnnotationImporter.getTagsToListAnnotation() |
StringQueryExpression |
OMEROTagToAnnotationImporter.getTagsToListFilter() |
boolean |
ImageImportParameters.isAutoScale() |
boolean |
ImageImportParameters.isConcatenate() |
boolean |
ImageImportParameters.isCrop() |
boolean |
OMEROKeyValuePairToAnnotationImporter.isEnabled() |
boolean |
AnnotationsToOMEROKeyValuePairExporter.isEnabled() |
boolean |
ImageImportParameters.isExtractRois() |
boolean |
ImageImportParameters.isSplitChannels() |
boolean |
ImageImportParameters.isSplitFocalPlanes() |
boolean |
ImageImportParameters.isSplitTimePoints() |
boolean |
ImageImportParameters.isStitchTiles() |
boolean |
ImageImportParameters.isSwapDimensions() |
| Modifier and Type | Method and Description |
|---|---|
OptionalPythonEnvironment |
OmniposePluginApplicationSettings.getDefaultEnvironment() |
OptionalPythonEnvironment |
OmniposePluginProjectSettings.getOmnipose0Environment() |
| Modifier and Type | Class and Description |
|---|---|
class |
ImportPretrainedOmnipose0ModelAlgorithm |
class |
Omnipose0InferenceAlgorithm |
class |
Omnipose0TrainingAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
LegacyOmnipose0InferenceAlgorithm
Deprecated.
|
class |
LegacyOmnipose0TrainingAlgorithm
Deprecated.
|
| Modifier and Type | Method and Description |
|---|---|
Cellpose2ChannelSettings |
LegacyOmnipose0TrainingAlgorithm.getChannelSettings()
Deprecated.
|
Cellpose2ChannelSettings |
LegacyOmnipose0InferenceAlgorithm.getChannelSettings()
Deprecated.
|
OptionalDoubleParameter |
LegacyOmnipose0TrainingAlgorithm.getDiameter()
Deprecated.
|
OptionalDoubleParameter |
LegacyOmnipose0InferenceAlgorithm.getDiameter()
Deprecated.
|
OptionalTextAnnotationNameParameter |
LegacyOmnipose0InferenceAlgorithm.getDiameterAnnotation()
Deprecated.
|
OmniposeSegmentationTweaksSettings |
LegacyOmnipose0InferenceAlgorithm.getEnhancementParameters()
Deprecated.
|
Cellpose2GPUSettings |
LegacyOmnipose0TrainingAlgorithm.getGpuSettings()
Deprecated.
|
Cellpose2GPUSettings |
LegacyOmnipose0InferenceAlgorithm.getGpuSettings()
Deprecated.
|
DataAnnotationQueryExpression |
LegacyOmnipose0TrainingAlgorithm.getLabelDataAnnotation()
Deprecated.
|
LegacyOmnipose0Model |
LegacyOmnipose0InferenceAlgorithm.getModel()
Deprecated.
|
int |
LegacyOmnipose0TrainingAlgorithm.getNumEpochs()
Deprecated.
|
OptionalPythonEnvironment |
LegacyOmnipose0TrainingAlgorithm.getOverrideEnvironment()
Deprecated.
|
OptionalPythonEnvironment |
LegacyOmnipose0InferenceAlgorithm.getOverrideEnvironment()
Deprecated.
|
LegacyOmnipose0PretrainedModel |
LegacyOmnipose0TrainingAlgorithm.getPretrainedModel()
Deprecated.
|
Cellpose2SegmentationOutputSettings |
LegacyOmnipose0InferenceAlgorithm.getSegmentationOutputSettings()
Deprecated.
|
OmniposeSegmentationThresholdSettings |
LegacyOmnipose0InferenceAlgorithm.getThresholdParameters()
Deprecated.
|
OmniposeTrainingTweaksSettings |
LegacyOmnipose0TrainingAlgorithm.getTweaksSettings()
Deprecated.
|
boolean |
LegacyOmnipose0TrainingAlgorithm.isCleanUpAfterwards()
Deprecated.
|
boolean |
LegacyOmnipose0InferenceAlgorithm.isCleanUpAfterwards()
Deprecated.
|
boolean |
LegacyOmnipose0TrainingAlgorithm.isEnable3DSegmentation()
Deprecated.
|
boolean |
LegacyOmnipose0InferenceAlgorithm.isEnable3DSegmentation()
Deprecated.
|
boolean |
LegacyOmnipose0TrainingAlgorithm.isSuppressLogs()
Deprecated.
|
boolean |
LegacyOmnipose0InferenceAlgorithm.isSuppressLogs()
Deprecated.
|
boolean |
LegacyOmnipose0TrainingAlgorithm.isTrainSizeModel()
Deprecated.
|
| Modifier and Type | Method and Description |
|---|---|
OptionalDoubleParameter |
OmniposeSegmentationTweaksSettings.getAnisotropy() |
int |
OmniposeTrainingTweaksSettings.getBatchSize() |
double |
OmniposeSegmentationThresholdSettings.getDiamThreshold() |
double |
OmniposeSegmentationThresholdSettings.getFlowThreshold() |
double |
OmniposeTrainingTweaksSettings.getLearningRate() |
double |
OmniposeSegmentationThresholdSettings.getMaskThreshold() |
int |
OmniposeTrainingTweaksSettings.getMinTrainMasks() |
OptionalDoubleParameter |
OmniposeSegmentationThresholdSettings.getStitchThreshold() |
boolean |
OmniposeSegmentationTweaksSettings.isCluster() |
boolean |
OmniposeTrainingTweaksSettings.isConcatenateDownsampledLayers() |
boolean |
OmniposeSegmentationTweaksSettings.isDisableResample() |
boolean |
OmniposeSegmentationThresholdSettings.isExcludeOnEdges() |
boolean |
OmniposeSegmentationTweaksSettings.isFastMode() |
boolean |
OmniposeTrainingTweaksSettings.isGenerateConnectedComponents() |
boolean |
OmniposeSegmentationTweaksSettings.isInterpolate() |
boolean |
OmniposeSegmentationTweaksSettings.isNetAverage() |
boolean |
OmniposeTrainingTweaksSettings.isUseResidualConnections() |
boolean |
OmniposeTrainingTweaksSettings.isUseStyleVector() |
| Modifier and Type | Class and Description |
|---|---|
class |
OpenCvImageData |
| Modifier and Type | Class and Description |
|---|---|
class |
ConvertDepthAlgorithm |
class |
ConvertTypeAlgorithm |
class |
InpaintingAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
OpenCvDepth |
ConvertDepthAlgorithm.getDepth() |
InpaintingAlgorithm.Method |
InpaintingAlgorithm.getMethod() |
int |
InpaintingAlgorithm.getRadius() |
OpenCvType |
ConvertTypeAlgorithm.getType() |
| Modifier and Type | Class and Description |
|---|---|
class |
BilateralFilterAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
OpenCvBorderType |
BilateralFilterAlgorithm.getBorderType() |
int |
BilateralFilterAlgorithm.getDiameter() |
double |
BilateralFilterAlgorithm.getSigmaColor() |
double |
BilateralFilterAlgorithm.getSigmaSpace() |
| Modifier and Type | Class and Description |
|---|---|
class |
GaborKernelGenerator |
class |
GaussianKernelGenerator |
| Modifier and Type | Method and Description |
|---|---|
double |
GaborKernelGenerator.getGamma() |
int |
GaborKernelGenerator.getHeight() |
double |
GaborKernelGenerator.getLambd() |
double |
GaborKernelGenerator.getPsi() |
double |
GaussianKernelGenerator.getSigma() |
double |
GaborKernelGenerator.getSigma() |
int |
GaussianKernelGenerator.getSize() |
double |
GaborKernelGenerator.getTheta() |
int |
GaborKernelGenerator.getWidth() |
| Modifier and Type | Method and Description |
|---|---|
DynamicStringSetParameter |
EnumParameterGenerator.getGeneratedValues() |
| Modifier and Type | Method and Description |
|---|---|
String |
FileChooserBookmark.getName() |
Path |
FileChooserBookmark.getPath() |
| Modifier and Type | Method and Description |
|---|---|
double |
StringOrDouble.getDoubleValue() |
double |
NumberRangeParameterGenerator.getMaxNumber() |
double |
NumberRangeParameterGenerator.getMinNumber() |
StringOrDouble.Mode |
StringOrDouble.getMode() |
double |
NumberRangeParameterGenerator.getStepSize() |
String |
StringOrDouble.getStringValue() |
| Modifier and Type | Method and Description |
|---|---|
OptionalBooleanParameter |
ImageJDataExportOperationRef.getActivate() |
OptionalBooleanParameter |
ImageJDataExportOperationRef.getAppend() |
OptionalBooleanParameter |
ImageJDataImportOperationRef.getDuplicate() |
OptionalBooleanParameter |
ImageJDataExportOperationRef.getDuplicate() |
OptionalStringParameter |
ImageJDataImportOperationRef.getName() |
OptionalStringParameter |
ImageJDataExportOperationRef.getName() |
OptionalBooleanParameter |
ImageJDataExportOperationRef.getNoWindows() |
| Modifier and Type | Method and Description |
|---|---|
Anchor |
FixedMargin.getAnchor() |
Anchor |
Margin.getAnchor() |
NumericFunctionExpression |
FixedMargin.getBottom() |
NumericFunctionExpression |
Margin.getBottom() |
NumericFunctionExpression |
InnerMargin.getBottom() |
NumericFunctionExpression |
Margin.getHeight() |
NumericFunctionExpression |
FixedMargin.getLeft() |
NumericFunctionExpression |
Margin.getLeft() |
NumericFunctionExpression |
InnerMargin.getLeft() |
NumericFunctionExpression |
FixedMargin.getRight() |
NumericFunctionExpression |
Margin.getRight() |
NumericFunctionExpression |
InnerMargin.getRight() |
NumericFunctionExpression |
FixedMargin.getTop() |
NumericFunctionExpression |
Margin.getTop() |
NumericFunctionExpression |
InnerMargin.getTop() |
NumericFunctionExpression |
Margin.getWidth() |
| Modifier and Type | Method and Description |
|---|---|
int |
RenderPipelineRunSettings.getLabelFontSize() |
OptionalIntegerParameter |
RenderPipelineRunSettings.getMaxEdgeWidth() |
boolean |
RenderPipelineRunSettings.isRenderLabel() |
boolean |
RenderPipelineRunSettings.isRenderShadow() |
| Modifier and Type | Class and Description |
|---|---|
class |
BarBoxAndWhiskerCategoryJFreeChartPlotData
A box and whisker plot
Series table columns: Value (Double), Category (String), Group (String)
Multiple series: Yes
|
class |
BarCategoryJFreeChartPlotData
A bar category plot
Series table columns: Value (Double), Category (String), Group (String)
Multiple series: No
|
class |
BarStatisticalCategoryJFreeChartPlotData
A statistical bar category plot
Series table columns: Value (Double), Category (String), Group (String)
Multiple series: No
|
class |
HistogramJFreeChartPlotData
Contains data to generate a histogram plot
Series table colums: Value (Numeric)
Multiple series: Yes
|
class |
JFreeChartPlotData
Contains all necessary data to generate a plot
|
class |
LineCategoryJFreeChartPlotData
Generates a bar category plot
Series table columns: Value (Double), Category (String), Group (String)
Multiple series: No
|
class |
LineStatisticalCategoryJFreeChartPlotData
Generates a bar category plot
Series table columns: Value (Double), Category (String), Group (String)
Multiple series: No
|
class |
LineXYJFreeChartPlotData
Generates a bar category plot
Series table columns: X (Double), Y (Double)
Multiple series: Yes
|
class |
Pie2DJFreeChartPlotData
Generates a Pie chart
Series table columns: Amount (Double), Category (String)
Multiple series: No
|
class |
Pie3DJFreeChartPlotData
Generates a Pie chart
Series table columns: Amount (Double), Category (String)
Multiple series: No
|
class |
ScatterXYJFreeChartPlotData
A scatter XY plot
Series table columns: X (Double), Y (Double)
Multiple series: Yes
|
class |
StackedBarCategoryJFreeChartPlotData
A stacked bar plot
Series table columns: Value (Double), Category (String), Group (String)
Multiple series: No
|
| Modifier and Type | Method and Description |
|---|---|
Color |
JFreeChartPlotData.getBackgroundColor() |
int |
HistogramJFreeChartPlotData.getBinAxisFontSize() |
String |
HistogramJFreeChartPlotData.getBinAxisLabel() |
OptionalDoubleParameter |
HistogramJFreeChartPlotData.getBinAxisMaximum() |
OptionalDoubleParameter |
HistogramJFreeChartPlotData.getBinAxisMinimum() |
int |
HistogramJFreeChartPlotData.getBins() |
int |
CategoryJFreeChartPlotData.getCategoryAxisFontSize() |
String |
CategoryJFreeChartPlotData.getCategoryAxisLabel() |
ColorMap |
JFreeChartPlotData.getColorMap() |
ColorListParameter |
JFreeChartPlotData.getCustomColorMap() |
int |
JFreeChartPlotData.getExportHeight() |
int |
JFreeChartPlotData.getExportWidth() |
Color |
JFreeChartPlotData.getGridColor() |
HistogramJFreeChartPlotData.HistogramType_ |
HistogramJFreeChartPlotData.getHistogramType() |
int |
Pie3DJFreeChartPlotData.getLabelFontSize() |
int |
Pie2DJFreeChartPlotData.getLabelFontSize() |
int |
JFreeChartPlotData.getLegendFontSize() |
int |
LineCategoryJFreeChartPlotData.getLineThickness() |
int |
LineStatisticalCategoryJFreeChartPlotData.getLineThickness() |
int |
LineXYJFreeChartPlotData.getLineThickness() |
String |
JFreeChartPlotDataSeries.getName() |
String |
JFreeChartPlotData.getTitle() |
int |
JFreeChartPlotData.getTitleFontSize() |
int |
CategoryJFreeChartPlotData.getValueAxisFontSize() |
int |
HistogramJFreeChartPlotData.getValueAxisFontSize() |
String |
CategoryJFreeChartPlotData.getValueAxisLabel() |
String |
HistogramJFreeChartPlotData.getValueAxisLabel() |
OptionalDoubleParameter |
CategoryJFreeChartPlotData.getValueAxisMaximum() |
OptionalDoubleParameter |
HistogramJFreeChartPlotData.getValueAxisMaximum() |
OptionalDoubleParameter |
CategoryJFreeChartPlotData.getValueAxisMinimum() |
OptionalDoubleParameter |
HistogramJFreeChartPlotData.getValueAxisMinimum() |
int |
XYJFreeChartPlotData.getxAxisFontSize() |
String |
XYJFreeChartPlotData.getxAxisLabel() |
OptionalDoubleParameter |
XYJFreeChartPlotData.getxAxisMaximum() |
OptionalDoubleParameter |
XYJFreeChartPlotData.getxAxisMinimum() |
int |
XYJFreeChartPlotData.getyAxisFontSize() |
String |
XYJFreeChartPlotData.getyAxisLabel() |
OptionalDoubleParameter |
XYJFreeChartPlotData.getyAxisMaximum() |
OptionalDoubleParameter |
XYJFreeChartPlotData.getyAxisMinimum() |
boolean |
JFreeChartPlotData.isUseCustomColorMap() |
boolean |
JFreeChartPlotData.isWithLegend() |
| Modifier and Type | Class and Description |
|---|---|
class |
PlotTablesAlgorithm
Deprecated.
Instead, the new dynamically generated plotting should be utilized
|
| Modifier and Type | Method and Description |
|---|---|
JIPipeDynamicParameterCollection |
PlotTablesAlgorithm.getInputColumns()
Deprecated.
|
JIPipeDynamicParameterCollection |
PlotTables2Algorithm.getInputColumns() |
JIPipeDataInfoRef |
PlotTablesAlgorithm.getPlotType()
Deprecated.
|
JFreeChartPlotData |
PlotTablesAlgorithm.getPlotTypeParameters()
Deprecated.
|
JFreeChartPlotData |
PlotTables2Algorithm.getPlotTypeParameters() |
StringQueryExpression |
PlotTablesAlgorithm.getSeriesName()
Deprecated.
|
StringQueryExpression |
PlotTables2Algorithm.getSeriesName() |
| Modifier and Type | Method and Description |
|---|---|
JIPipeExpressionParameter |
ProcessEnvironment.getArguments() |
StringQueryExpressionAndStringPairParameter.List |
ProcessEnvironment.getEnvironmentVariables() |
Path |
ProcessEnvironment.getExecutablePathLinux() |
Path |
ProcessEnvironment.getExecutablePathOSX() |
Path |
ProcessEnvironment.getExecutablePathWindows() |
ProcessEnvironment.List |
JIPipeProcessesPluginApplicationSettings.getPresets() |
JIPipeExpressionParameter |
ProcessEnvironment.getWorkDirectory() |
| Modifier and Type | Method and Description |
|---|---|
JIPipeExpressionParameter |
PythonEnvironment.getArguments() |
OptionalPythonEnvironment |
PythonPluginApplicationSettings.getDefaultEnvironment() |
StringQueryExpressionAndStringPairParameter.List |
PythonEnvironment.getEnvironmentVariables() |
Path |
PythonEnvironment.getExecutablePath() |
Path |
PythonPackageLibraryEnvironment.getLibraryDirectory() |
PythonEnvironment.List |
PythonPluginApplicationSettings.getPresets() |
OptionalPythonEnvironment |
PythonPluginProjectSettings.getProjectDefaultEnvironment() |
OptionalJIPipePythonAdapterLibraryEnvironment |
PythonPluginProjectSettings.getProjectPythonAdapterLibraryEnvironment() |
PythonEnvironmentType |
PythonEnvironment.getType() |
boolean |
PythonPackageLibraryEnvironment.isProvidedByEnvironment() |
| Modifier and Type | Method and Description |
|---|---|
OptionalJIPipePythonAdapterLibraryEnvironment |
JIPipePythonPluginAdapterApplicationSettings.getDefaultEnvironment() |
JIPipePythonAdapterLibraryEnvironment.List |
JIPipePythonPluginAdapterApplicationSettings.getPresets() |
| Modifier and Type | Class and Description |
|---|---|
class |
IteratingJythonScriptAlgorithm
An algorithm that allows to run Python code
|
class |
JythonScriptAlgorithm
An algorithm that allows to run Python code
|
class |
MergingJythonScriptAlgorithm
An algorithm that allows to run Python code
|
class |
SimpleIteratingJythonScriptAlgorithm
An algorithm that allows to run Python code
|
| Modifier and Type | Method and Description |
|---|---|
PythonScript |
SimpleIteratingJythonScriptAlgorithm.getCode() |
PythonScript |
MergingJythonScriptAlgorithm.getCode() |
PythonScript |
JythonScriptAlgorithm.getCode() |
PythonScript |
IteratingJythonScriptAlgorithm.getCode() |
JIPipeDynamicParameterCollection |
SimpleIteratingJythonScriptAlgorithm.getScriptParameters() |
JIPipeDynamicParameterCollection |
MergingJythonScriptAlgorithm.getScriptParameters() |
JIPipeDynamicParameterCollection |
JythonScriptAlgorithm.getScriptParameters() |
JIPipeDynamicParameterCollection |
IteratingJythonScriptAlgorithm.getScriptParameters() |
| Modifier and Type | Class and Description |
|---|---|
class |
IteratingPythonScriptAlgorithm
An algorithm that allows to run Python code
|
class |
MergingPythonScriptAlgorithm
An algorithm that allows to run Python code
|
class |
PythonScriptAlgorithm
An algorithm that allows to run Python code
|
| Modifier and Type | Class and Description |
|---|---|
class |
SelectCondaEnvPythonInstaller |
class |
SelectSystemPythonInstaller |
class |
SelectVirtualEnvPythonInstaller |
| Modifier and Type | Method and Description |
|---|---|
Path |
SelectCondaEnvPythonInstaller.Configuration.getCondaExecutable() |
String |
SelectCondaEnvPythonInstaller.Configuration.getEnvironmentName() |
String |
SelectCondaEnvPythonInstaller.Configuration.getName() |
String |
SelectSystemPythonInstaller.Configuration.getName() |
String |
SelectVirtualEnvPythonInstaller.Configuration.getName() |
OptionalPathParameter |
SelectCondaEnvPythonInstaller.Configuration.getOverrideEnvironment() |
Path |
SelectSystemPythonInstaller.Configuration.getPythonExecutable() |
Path |
SelectVirtualEnvPythonInstaller.Configuration.getVirtualEnvDirectory() |
| Modifier and Type | Method and Description |
|---|---|
JIPipeExpressionParameter |
REnvironment.getArguments() |
OptionalREnvironment |
RPluginApplicationSettings.getDefaultEnvironment() |
StringQueryExpressionAndStringPairParameter.List |
REnvironment.getEnvironmentVariables() |
REnvironment.List |
RPluginApplicationSettings.getPresets() |
OptionalREnvironment |
RPluginProjectSettings.getProjectDefaultEnvironment() |
Path |
REnvironment.getRExecutablePath() |
Path |
REnvironment.getRScriptExecutablePath() |
| Modifier and Type | Class and Description |
|---|---|
class |
ImportRDatasetAlgorithm |
class |
IteratingRScriptAlgorithm |
class |
MergingRScriptAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
JIPipeTextAnnotationMergeMode |
MergingRScriptAlgorithm.getAnnotationMergeStrategy() |
JIPipeTextAnnotationMergeMode |
IteratingRScriptAlgorithm.getAnnotationMergeStrategy() |
ImportRDatasetAlgorithm.Dataset |
ImportRDatasetAlgorithm.getDataset() |
OptionalREnvironment |
MergingRScriptAlgorithm.getOverrideEnvironment() |
OptionalREnvironment |
ImportRDatasetAlgorithm.getOverrideEnvironment() |
OptionalREnvironment |
IteratingRScriptAlgorithm.getOverrideEnvironment() |
RScriptParameter |
MergingRScriptAlgorithm.getScript() |
RScriptParameter |
IteratingRScriptAlgorithm.getScript() |
JIPipeDynamicParameterCollection |
MergingRScriptAlgorithm.getVariables() |
JIPipeDynamicParameterCollection |
IteratingRScriptAlgorithm.getVariables() |
boolean |
MergingRScriptAlgorithm.isCleanUpAfterwards() |
boolean |
IteratingRScriptAlgorithm.isCleanUpAfterwards() |
| Modifier and Type | Class and Description |
|---|---|
class |
Scene3DData |
| Modifier and Type | Method and Description |
|---|---|
float |
Scene3DSphereGeometry.getCenterX() |
float |
Scene3DSphereGeometry.getCenterY() |
float |
Scene3DSphereGeometry.getCenterZ() |
Color |
Scene3DSphereGeometry.getColor() |
Color |
Scene3DLineGeometry.getColor() |
Scene3DLineGeometry.LineEndPoint |
Scene3DLineGeometry.getEnd() |
String |
Scene3DSphereGeometry.getName() |
String |
Scene3DLineGeometry.getName() |
float |
Scene3DLineGeometry.LineEndPoint.getRadius() |
float |
Scene3DSphereGeometry.getRadiusX() |
float |
Scene3DSphereGeometry.getRadiusY() |
float |
Scene3DSphereGeometry.getRadiusZ() |
int |
Scene3DSphereGeometry.getSmoothness() |
int |
Scene3DLineGeometry.getSmoothness() |
Scene3DLineGeometry.LineEndPoint |
Scene3DLineGeometry.getStart() |
float |
Scene3DLineGeometry.LineEndPoint.getX() |
float |
Scene3DLineGeometry.LineEndPoint.getY() |
float |
Scene3DLineGeometry.LineEndPoint.getZ() |
| Modifier and Type | Class and Description |
|---|---|
class |
CreateLineMeshAlgorithm |
class |
CreateSphereMeshAlgorithm |
class |
ExportScene3DToColladaAlgorithm
Deprecated.
|
class |
ExportScene3DToColladaAlgorithm2 |
class |
GroupSceneAlgorithm |
class |
MaskTo3DMeshAlgorithm |
class |
MergeScenesAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
JIPipeDataByMetadataExporter |
ExportScene3DToColladaAlgorithm.getExporter()
Deprecated.
|
DataExportExpressionParameter |
ExportScene3DToColladaAlgorithm2.getFilePath() |
Scene3DLineGeometry |
CreateLineMeshAlgorithm.getGeometry() |
Scene3DSphereGeometry |
CreateSphereMeshAlgorithm.getGeometry() |
String |
GroupSceneAlgorithm.getGroupName() |
Color |
MaskTo3DMeshAlgorithm.getMeshColor() |
Quantity.LengthUnit |
MaskTo3DMeshAlgorithm.getMeshLengthUnit() |
String |
MaskTo3DMeshAlgorithm.getMeshName() |
Path |
ExportScene3DToColladaAlgorithm.getOutputDirectory()
Deprecated.
|
boolean |
MaskTo3DMeshAlgorithm.isForceMeshLengthUnit() |
boolean |
ExportScene3DToColladaAlgorithm.isIndexMeshes()
Deprecated.
|
boolean |
ExportScene3DToColladaAlgorithm2.isIndexMeshes() |
boolean |
MaskTo3DMeshAlgorithm.isPhysicalSizes() |
boolean |
ExportScene3DToColladaAlgorithm.isRelativeToProjectDir()
Deprecated.
|
| Modifier and Type | Method and Description |
|---|---|
JIPipeExpressionParameter |
JIPipeDownloadsApplicationSettings.DownloadEnvironment.getArguments() |
int |
JIPipeGraphEditorUIApplicationSettings.getAutoHideEdgeDistanceThreshold() |
double |
JIPipeGraphEditorUIApplicationSettings.getAutoHideEdgeOverlapThreshold() |
JIPipepGraphAutoLayoutMethod |
JIPipeGraphEditorUIApplicationSettings.getAutoLayout() |
int |
JIPipeBackupApplicationSettings.getBackupDelay() |
StringList |
JIPipeNotificationUIApplicationSettings.getBlockedNotifications() |
FileChooserBookmarkList |
JIPipeFileChooserApplicationSettings.getBookmarks() |
String |
JIPipeGraphEditorUIApplicationSettings.DockLayoutSettings.getCompartmentsEditorDockLayout() |
StringAndStringPairParameter.List |
JIPipeGraphEditorUIApplicationSettings.DockLayoutSettings.getCompartmentsEditorDockLayoutTemplates() |
OptionalPathParameter |
JIPipeBackupApplicationSettings.getCustomBackupPath() |
JIPipeGraphEdge.Visibility |
JIPipeGraphEditorUIApplicationSettings.getDefaultEdgeVisibility() |
int |
JIPipeRuntimeApplicationSettings.getDefaultQuickRunThreads() |
int |
JIPipeRuntimeApplicationSettings.getDefaultRunThreads() |
JIPipeGraphEditorUIApplicationSettings.DockLayoutSettings |
JIPipeGraphEditorUIApplicationSettings.getDockLayoutSettings() |
IntegerAndIntegerPairParameter.List |
JIPipeGeneralDataApplicationSettings.getExportedPreviewSizes() |
JIPipeDownloadsApplicationSettings.DownloadEnvironment |
JIPipeDownloadsApplicationSettings.getExternalDownloaderProcess() |
JIPipeFileChooserApplicationSettings.FileChooserType |
JIPipeFileChooserApplicationSettings.getFileChooserType() |
Path |
JIPipeFileChooserApplicationSettings.getLastDataDirectory() |
Path |
JIPipeFileChooserApplicationSettings.getLastExternalDirectory() |
Path |
JIPipeFileChooserApplicationSettings.getLastParametersDirectory() |
Path |
JIPipeFileChooserApplicationSettings.getLastProjectsDirectory() |
int |
JIPipeRuntimeApplicationSettings.getLogLimit() |
int |
JIPipeHistoryJournalApplicationSettings.getMaxEntries() |
int |
JIPipeGeneralDataApplicationSettings.getMaxTableColumnSize() |
JIPipeGraphEditorUIApplicationSettings.NodeSearchSettings |
JIPipeGraphEditorUIApplicationSettings.getNodeSearchSettings() |
StringList |
JIPipeNodeTemplateApplicationSettings.getNodeTemplateDownloadRepositories() |
OptionalPathParameter |
JIPipeDataStorageProjectSettings.getOverrideTempDirectory() |
StringList |
JIPipeGraphEditorUIApplicationSettings.NodeSearchSettings.getPinnedNodes() |
String |
JIPipeGraphEditorUIApplicationSettings.DockLayoutSettings.getPipelineEditorDockLayout() |
StringAndStringPairParameter.List |
JIPipeGraphEditorUIApplicationSettings.DockLayoutSettings.getPipelineEditorDockLayoutTemplates() |
int |
JIPipeGeneralDataApplicationSettings.getPreviewSize() |
OptionalJIPipeAuthorMetadata.List |
JIPipeProjectAuthorsApplicationSettings.getProjectAuthors() |
JIPipeProjectDefaultsApplicationSettings.ProjectTemplateEnum |
JIPipeProjectDefaultsApplicationSettings.getProjectTemplate() |
StringList |
JIPipeProjectDefaultsApplicationSettings.getProjectTemplateDownloadRepositories() |
OptionalIntegerParameter |
JIPipeNotificationUIApplicationSettings.getShowAfterMinRuntime() |
OptionalPathParameter |
JIPipeRuntimeApplicationSettings.getTempDirectory() |
JIPipeDesktopUITheme |
JIPipeGeneralUIApplicationSettings.getTheme() |
int |
JIPipeGraphEditorUIApplicationSettings.getToolInfoDistance() |
boolean |
JIPipeGeneralUIApplicationSettings.isAddContextActionsToContextMenu() |
boolean |
JIPipeFileChooserApplicationSettings.isAddFileExtension() |
boolean |
JIPipeRuntimeApplicationSettings.isAllowCache() |
boolean |
JIPipeGeneralUIApplicationSettings.isAllowDefaultCollapsedParameters() |
boolean |
JIPipeRuntimeApplicationSettings.isAllowSkipAlgorithmsWithoutInput() |
boolean |
JIPipeGraphEditorUIApplicationSettings.isAskOnDeleteCompartment() |
boolean |
JIPipeGraphEditorUIApplicationSettings.isAskOnDeleteNode() |
boolean |
JIPipeGraphEditorUIApplicationSettings.isAskOnDeleteParameter() |
boolean |
JIPipeGraphEditorUIApplicationSettings.isAutoLayoutMovesOtherNodes() |
boolean |
JIPipeProjectAuthorsApplicationSettings.isAutomaticallyAddToProjects() |
boolean |
JIPipeGraphEditorUIApplicationSettings.isAutoMuteBySelection() |
boolean |
JIPipeGraphEditorUIApplicationSettings.isAutoMuteEdgesEnabled() |
boolean |
JIPipeGeneralDataApplicationSettings.isAutoRemoveOutdatedCachedData() |
boolean |
JIPipeGeneralDataApplicationSettings.isAutoSaveLastDisplay() |
boolean |
JIPipeGeneralDataApplicationSettings.isAutoSaveLastImporter() |
boolean |
JIPipeGraphEditorUIApplicationSettings.isColorSelectedNodeEdges() |
boolean |
JIPipeGraphEditorUIApplicationSettings.isDrawArrowHeads() |
boolean |
JIPipeGraphEditorUIApplicationSettings.isDrawImprovedEdges() |
boolean |
JIPipeGraphEditorUIApplicationSettings.isDrawLabelsOnHover() |
boolean |
JIPipeGraphEditorUIApplicationSettings.isDrawNodeShadows() |
boolean |
JIPipeGraphEditorUIApplicationSettings.isDrawOutsideEdges() |
boolean |
JIPipeBackupApplicationSettings.isEnableBackups() |
boolean |
JIPipeNotificationUIApplicationSettings.isEnableNotifications() |
boolean |
JIPipeDataStorageProjectSettings.isForceGlobalTempDirectory() |
boolean |
JIPipeGeneralDataApplicationSettings.isGenerateCachePreviews() |
boolean |
JIPipeGeneralDataApplicationSettings.isGenerateResultPreviews() |
boolean |
JIPipeExtensionApplicationSettings.isIgnorePreActivationChecks() |
boolean |
JIPipeGraphEditorUIApplicationSettings.isLayoutAfterAlgorithmFinder() |
boolean |
JIPipeGraphEditorUIApplicationSettings.isLayoutAfterConnect() |
boolean |
JIPipeGeneralUIApplicationSettings.isMaximizeWindows() |
boolean |
JIPipeGeneralUIApplicationSettings.isNeverAskOnClosingTabs() |
boolean |
JIPipeGraphEditorUIApplicationSettings.isNotifyInvalidDragAndDrop() |
boolean |
JIPipeGeneralUIApplicationSettings.isOpenDataWindowsAlwaysOnTop() |
boolean |
JIPipeGeneralUIApplicationSettings.isOpenUtilityWindowsAlwaysOnTop() |
boolean |
JIPipeRuntimeApplicationSettings.isPerProjectTempDirectory() |
boolean |
JIPipeDownloadsApplicationSettings.isPreferCustomDownloader() |
boolean |
JIPipeProjectDefaultsApplicationSettings.isRestoreTabs() |
boolean |
JIPipeGraphEditorUIApplicationSettings.NodeSearchSettings.isSearchFindExistingNodes() |
boolean |
JIPipeGraphEditorUIApplicationSettings.NodeSearchSettings.isSearchFindNewNodes() |
boolean |
JIPipeGraphEditorUIApplicationSettings.NodeSearchSettings.isShowDescriptions() |
boolean |
JIPipeGraphEditorUIApplicationSettings.NodeSearchSettings.isShowHierarchySelection() |
boolean |
JIPipeGeneralUIApplicationSettings.isShowIntroduction() |
boolean |
JIPipeNotificationUIApplicationSettings.isShowNotificationsAfterFirstStart() |
boolean |
JIPipeGeneralUIApplicationSettings.isShowParameterSearchBar() |
boolean |
JIPipeGeneralUIApplicationSettings.isShowProjectInfo() |
boolean |
JIPipeNotificationUIApplicationSettings.isShowRunNotifications() |
boolean |
JIPipeNotificationUIApplicationSettings.isShowRunOnlyIfInactive() |
boolean |
JIPipeTableViewerUIApplicationSettings.isShowSideBar() |
boolean |
JIPipeGraphEditorUIApplicationSettings.DockLayoutSettings.isShowToolbarLabels() |
boolean |
JIPipeGraphEditorUIApplicationSettings.isShowToolInfo() |
boolean |
JIPipeExtensionApplicationSettings.isSilent() |
boolean |
JIPipeGraphEditorUIApplicationSettings.isSwitchPanningDirection() |
boolean |
JIPipeGeneralUIApplicationSettings.isSwitchToProjectInfoOnUnknownProject() |
boolean |
JIPipeExtensionApplicationSettings.isValidateNodeTypes() |
boolean |
JIPipeGeneralUIApplicationSettings.isValidateOnSave() |
boolean |
JIPipeProjectAuthorsApplicationSettings.isWarnNoAuthors() |
| Modifier and Type | Class and Description |
|---|---|
class |
JsonData |
class |
StringData
A data type that contains a string
|
class |
URIData |
class |
XMLData |
| Modifier and Type | Class and Description |
|---|---|
class |
ImportJsonAlgorithm |
class |
ImportStringAlgorithm |
class |
ImportXMLAlgorithm |
class |
StringDefinitionDataSource |
| Modifier and Type | Method and Description |
|---|---|
String |
StringDefinitionDataSource.getValue() |
boolean |
ImportJsonAlgorithm.isValidateJson() |
boolean |
ImportXMLAlgorithm.isValidateXml() |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateWithJsonDataAlgorithm |
class |
ExtractJsonDataAsTableAlgorithm |
class |
ExtractTextFromJsonAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
JIPipeTextAnnotationMergeMode |
AnnotateWithJsonDataAlgorithm.getAnnotationMergeMode() |
JIPipeExpressionParameter |
AnnotateWithJsonDataAlgorithm.Entry.getAnnotationName() |
JIPipeExpressionParameter |
ExtractJsonDataAsTableAlgorithm.Entry.getColumnName() |
TableColumnNormalization |
ExtractJsonDataAsTableAlgorithm.getColumnNormalization() |
ParameterCollectionList |
AnnotateWithJsonDataAlgorithm.getEntries() |
ParameterCollectionList |
ExtractJsonDataAsTableAlgorithm.getEntries() |
JIPipeExpressionParameter |
ExtractTextFromJsonAlgorithm.getJsonPath() |
JIPipeExpressionParameter |
AnnotateWithJsonDataAlgorithm.Entry.getJsonPath() |
JIPipeExpressionParameter |
ExtractJsonDataAsTableAlgorithm.Entry.getJsonPath() |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateWithTextDataAlgorithm |
class |
ProcessTextDataAlgorithm |
class |
TableToCSVTextAlgorithm |
class |
TextDataToTableAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
JIPipeTextAnnotationMergeMode |
AnnotateWithTextDataAlgorithm.getAnnotationMergeMode() |
JIPipeExpressionParameter |
AnnotateWithTextDataAlgorithm.Entry.getAnnotationName() |
JIPipeExpressionParameter |
TextDataToTableAlgorithm.Entry.getColumnName() |
TableColumnNormalization |
TextDataToTableAlgorithm.getColumnNormalization() |
ParameterCollectionList |
TextDataToTableAlgorithm.getEntries() |
ParameterCollectionList |
AnnotateWithTextDataAlgorithm.getEntries() |
JIPipeExpressionParameter |
TextDataToTableAlgorithm.Entry.getPreprocessor() |
JIPipeExpressionParameter |
AnnotateWithTextDataAlgorithm.Entry.getPreprocessor() |
JIPipeExpressionParameter |
ProcessTextDataAlgorithm.getTextProcessor() |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateWithXPathDataAlgorithm |
class |
ExtractTextFromXMLAlgorithm |
class |
ExtractXPathDataAsTableAlgorithm |
class |
PrettifyXMLAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ResultsTableDataImageJExporter |
class |
ResultsTableDataImageJImporter |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotationTableData
A special kind of
ResultsTableData that stores annotation columns. |
class |
DoubleArrayTableColumnData
TableColumnData that contains doubles. |
class |
FloatArrayTableColumnData
TableColumnData that contains doubles. |
class |
ResultsTableData
Data containing a
ResultsTable |
class |
RowIndexTableColumnData
Generates numbers from 0 to row count
|
class |
StringArrayTableColumnData
TableColumnData that contains doubles. |
interface |
TableColumnData
An
JIPipeData type that represents a column. |
class |
ZeroTableColumnData
Generates numbers from 0 to row count
|
| Modifier and Type | Class and Description |
|---|---|
class |
DefineTablesAlgorithm
Algorithm that annotates all data with the same annotation
|
class |
GenerateColumnAlgorithm
Algorithm that adds or replaces a column by a generated value
|
class |
GenerateTableFromExpressionAlgorithm
Algorithm that adds or replaces a column by a generated value
|
class |
IntegrateColumnsAlgorithm
Algorithm that integrates columns
|
class |
ModifyAndMergeTablesScript
Algorithm that annotates all data with the same annotation
|
class |
ModifyTableColumnNamesAlgorithm |
class |
ModifyTablesScript
Algorithm that annotates all data with the same annotation
|
class |
TablesFromScript
Algorithm that annotates all data with the same annotation
|
| Modifier and Type | Class and Description |
|---|---|
class |
AddAnnotationColumnsAlgorithm
Algorithm that integrates columns
|
class |
AnnotateByTablePropertiesAlgorithm |
class |
AnnotateDataWithTableValues |
class |
ConvertAnnotationTableToAnnotatedTables
Algorithm that integrates columns
|
| Modifier and Type | Class and Description |
|---|---|
class |
ApplyExpressionToColumnsAlgorithm
Deprecated.
|
class |
ApplyExpressionToTableByColumnAlgorithm
Algorithm that integrates columns
|
class |
ColumnsToAnnotationsAlgorithm |
class |
ColumnToNumericAlgorithm
Algorithm that removes columns
|
class |
ColumnToStringAlgorithm
Algorithm that removes columns
|
class |
ConvertColumnsAlgorithm
Algorithm that integrates columns
|
class |
RemoveColumnAlgorithm
Algorithm that removes columns
|
class |
RenameSingleColumnsAlgorithm
Algorithm that removes columns
|
class |
RenameTableColumns2Algorithm
Algorithm that removes columns
|
class |
RenameTableColumnsAlgorithm
Deprecated.
|
class |
RenameTableColumnsToAnnotationAlgorithm
Algorithm that removes columns
|
class |
SortTableColumnsAlgorithm
Algorithm that integrates columns
|
| Modifier and Type | Method and Description |
|---|---|
JIPipeTextAnnotationMergeMode |
ColumnsToAnnotationsAlgorithm.getAnnotationMergeStrategy() |
TableCellValueQueryExpression |
ColumnsToAnnotationsAlgorithm.getFilter() |
StringQueryExpression |
ColumnToStringAlgorithm.getFilters() |
StringQueryExpression |
RemoveColumnAlgorithm.getFilters() |
StringQueryExpression |
ColumnToNumericAlgorithm.getFilters() |
StringList |
SortTableColumnsAlgorithm.getManualOrder() |
JIPipeExpressionParameter |
RenameTableColumns2Algorithm.RenamingEntry.getNewName() |
JIPipeExpressionParameter |
ApplyExpressionToTableByColumnAlgorithm.ProcessingItem.getOutputColumnName() |
JIPipeExpressionParameter |
ApplyExpressionToTableByColumnAlgorithm.ProcessingItem.getOutputColumnValues() |
ConvertingTableColumnProcessorParameterList |
ConvertColumnsAlgorithm.getProcessorParameters() |
ParameterCollectionList |
ApplyExpressionToTableByColumnAlgorithm.getProcessorParameters() |
ExpressionTableColumnProcessorParameterList |
ApplyExpressionToColumnsAlgorithm.getProcessorParameters()
Deprecated.
|
StringQueryExpressionAndStringPairParameter.List |
RenameSingleColumnsAlgorithm.getRenamingEntries() |
StringQueryExpressionAndStringQueryPairParameter.List |
RenameTableColumnsToAnnotationAlgorithm.getRenamingEntries() |
ParameterCollectionList |
RenameTableColumns2Algorithm.getRenamingEntries() |
StringQueryExpressionAndStringPairParameter.List |
RenameTableColumnsAlgorithm.getRenamingEntries()
Deprecated.
|
JIPipeTextAnnotationMergeMode |
ColumnsToAnnotationsAlgorithm.getRowMergingStrategy() |
StringQueryExpression |
RenameTableColumns2Algorithm.RenamingEntry.getSourceColumn() |
boolean |
ConvertColumnsAlgorithm.isAppend() |
boolean |
ApplyExpressionToColumnsAlgorithm.isAppend()
Deprecated.
|
boolean |
RenameTableColumnsToAnnotationAlgorithm.isIgnoreMissingAnnotations() |
boolean |
RenameTableColumnsToAnnotationAlgorithm.isIgnoreMissingColumns() |
boolean |
ColumnToNumericAlgorithm.isOnlyIfPossible() |
boolean |
SortTableColumnsAlgorithm.isReverseSortOrder() |
boolean |
SortTableColumnsAlgorithm.isUseNaturalSortOrder() |
| Modifier and Type | Class and Description |
|---|---|
class |
FilterTableRowsAlgorithm
Algorithm that integrates columns
|
class |
FilterTablesAlgorithm
Algorithm that integrates columns
|
class |
SliceTableRowsAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
JIPipeExpressionParameter |
FilterTableRowsAlgorithm.getFilters() |
JIPipeExpressionParameter |
FilterTablesAlgorithm.getFilters() |
IntegerRange |
SliceTableRowsAlgorithm.getLimit() |
| Modifier and Type | Class and Description |
|---|---|
class |
MergeColumnsAlgorithm
Algorithm that integrates columns
|
class |
MergeTableColumnsSimpleAlgorithm
Algorithm that integrates columns
|
class |
MergeTableColumnsSupplementAlgorithm
Algorithm that integrates columns
|
class |
MergeTableColumnsSupplementMergingAlgorithm
Algorithm that integrates columns
|
class |
MergeTableRowsAlgorithm
Algorithm that integrates columns
|
| Modifier and Type | Method and Description |
|---|---|
StringQueryExpression |
MergeTableColumnsSupplementAlgorithm.getColumnFilter() |
StringQueryExpression |
MergeTableColumnsSimpleAlgorithm.getColumnFilter() |
StringQueryExpression |
MergeTableColumnsSupplementMergingAlgorithm.getColumnFilter() |
StringQueryExpression |
MergeTableColumnsSupplementAlgorithm.getReferenceColumns() |
StringQueryExpression |
MergeTableColumnsSupplementMergingAlgorithm.getReferenceColumns() |
TableColumnNormalization |
MergeTableColumnsSupplementAlgorithm.getRowNormalization() |
TableColumnNormalization |
MergeTableColumnsSimpleAlgorithm.getRowNormalization() |
TableColumnNormalization |
MergeTableColumnsSupplementMergingAlgorithm.getRowNormalization() |
boolean |
MergeTableColumnsSupplementAlgorithm.isExtendTarget() |
boolean |
MergeTableColumnsSupplementMergingAlgorithm.isExtendTarget() |
boolean |
MergeTableColumnsSupplementMergingAlgorithm.isRestoreOriginalAnnotations() |
boolean |
MergeTableColumnsSupplementAlgorithm.isSkipEmptyTarget() |
boolean |
MergeTableColumnsSupplementMergingAlgorithm.isSkipEmptyTarget() |
| Modifier and Type | Class and Description |
|---|---|
class |
AddMissingRowsInSeriesAlgorithm |
class |
ApplyExpressionPerRowAlgorithm
Deprecated.
|
class |
ApplyExpressionPerRowAlgorithm2 |
class |
SortTableRowsAlgorithm
Algorithm that integrates columns
|
| Modifier and Type | Class and Description |
|---|---|
class |
SplitTableByColumnsAlgorithm
Algorithm that integrates columns
|
class |
SplitTableIntoColumnsAlgorithm
Algorithm that integrates columns
|
class |
SplitTableIntoRowsAlgorithm
Algorithm that integrates columns
|
| Modifier and Type | Method and Description |
|---|---|
StringQueryExpression |
SplitTableIntoColumnsAlgorithm.getColumnFilter() |
StringQueryExpression |
SplitTableByColumnsAlgorithm.getColumns() |
OptionalStringParameter |
SplitTableIntoColumnsAlgorithm.getGeneratedAnnotation() |
boolean |
SplitTableByColumnsAlgorithm.isAddAsAnnotations() |
boolean |
SplitTableIntoRowsAlgorithm.isAnnotateWithValues() |
| Modifier and Type | Class and Description |
|---|---|
class |
DBSCANClusteringAlgorithm |
class |
FuzzyKMeansClusteringAlgorithm |
class |
KMeansClusteringAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
DBSCANClusteringAlgorithm.ClusteringSettings |
DBSCANClusteringAlgorithm.getClusteringSettings() |
FuzzyKMeansClusteringAlgorithm.ClusteringSettings |
FuzzyKMeansClusteringAlgorithm.getClusteringSettings() |
KMeansClusteringAlgorithm.ClusteringSettings |
KMeansClusteringAlgorithm.getClusteringSettings() |
DistanceMeasures |
DBSCANClusteringAlgorithm.ClusteringSettings.getDistanceMeasure() |
DistanceMeasures |
FuzzyKMeansClusteringAlgorithm.ClusteringSettings.getDistanceMeasure() |
DistanceMeasures |
KMeansClusteringAlgorithm.ClusteringSettings.getDistanceMeasure() |
org.apache.commons.math3.ml.clustering.KMeansPlusPlusClusterer.EmptyClusterStrategy |
KMeansClusteringAlgorithm.ClusteringSettings.getEmptyClusterStrategy() |
int |
DBSCANClusteringAlgorithm.getEpsilon() |
double |
FuzzyKMeansClusteringAlgorithm.ClusteringSettings.getEpsilon() |
double |
FuzzyKMeansClusteringAlgorithm.getFuzziness() |
TableColumnSourceExpressionParameter.List |
DBSCANClusteringAlgorithm.getInputColumns() |
TableColumnSourceExpressionParameter.List |
FuzzyKMeansClusteringAlgorithm.getInputColumns() |
TableColumnSourceExpressionParameter.List |
KMeansClusteringAlgorithm.getInputColumns() |
int |
FuzzyKMeansClusteringAlgorithm.getK() |
int |
KMeansClusteringAlgorithm.getK() |
int |
DBSCANClusteringAlgorithm.ClusteringSettings.getMaxIterations() |
int |
FuzzyKMeansClusteringAlgorithm.ClusteringSettings.getMaxIterations() |
int |
KMeansClusteringAlgorithm.ClusteringSettings.getMaxIterations() |
String |
FuzzyKMeansClusteringAlgorithm.OutputSettings.getMembershipPrefix() |
int |
DBSCANClusteringAlgorithm.getMinNumPoints() |
int |
KMeansClusteringAlgorithm.getNumTrials() |
OptionalStringParameter |
DBSCANClusteringAlgorithm.OutputSettings.getOutputColumnClusterId() |
OptionalStringParameter |
FuzzyKMeansClusteringAlgorithm.OutputSettings.getOutputColumnClusterId() |
OptionalStringParameter |
KMeansClusteringAlgorithm.OutputSettings.getOutputColumnClusterId() |
OptionalStringParameter |
DBSCANClusteringAlgorithm.OutputSettings.getOutputColumnClusterSize() |
OptionalStringParameter |
FuzzyKMeansClusteringAlgorithm.OutputSettings.getOutputColumnClusterSize() |
OptionalStringParameter |
KMeansClusteringAlgorithm.OutputSettings.getOutputColumnClusterSize() |
OptionalStringParameter |
FuzzyKMeansClusteringAlgorithm.OutputSettings.getOutputColumnDistanceToCenter() |
OptionalStringParameter |
KMeansClusteringAlgorithm.OutputSettings.getOutputColumnDistanceToCenter() |
DBSCANClusteringAlgorithm.OutputSettings |
DBSCANClusteringAlgorithm.getOutputSettings() |
FuzzyKMeansClusteringAlgorithm.OutputSettings |
FuzzyKMeansClusteringAlgorithm.getOutputSettings() |
KMeansClusteringAlgorithm.OutputSettings |
KMeansClusteringAlgorithm.getOutputSettings() |
| Modifier and Type | Class and Description |
|---|---|
class |
ApplyExpressionPerLabelAlgorithm |
class |
MeltTableAlgorithm
Algorithm that integrates columns
|
class |
TableToHistogram2Algorithm |
class |
TableToHistogramAlgorithm
Deprecated.
|
class |
UnMeltTableAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
ColumnContentType |
TableColumnGeneratorParameter.getGeneratedType() |
JIPipeDataInfoRef |
TableColumnGeneratorParameter.getGeneratorType() |
| Modifier and Type | Class and Description |
|---|---|
class |
ConverterAlgorithm
Algorithm that converts any type to any other type
|
class |
DataSlicer |
class |
DuplicateDataAlgorithm |
class |
ImportJIPipeSlotFolderAlgorithm |
class |
IterationStepSlicer |
class |
RunExpressionAlgorithm |
class |
SelectDataTableRowsAlgorithm |
class |
SleepAlgorithm |
class |
SortRowsByAnnotationsAlgorithm |
class |
SortRowsByExpressionAlgorithm |
class |
ToDataStringAlgorithm |
class |
UsePlaceholderForMissingDataAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateWithDataTableProperties |
class |
ExtractTableAlgorithm |
class |
MergeDataToTableAlgorithm |
class |
PullDataTableAnnotations |
class |
PushDataTableAnnotations |
| Modifier and Type | Class and Description |
|---|---|
class |
DistributeDataRandomlyByCountAlgorithm |
class |
DistributeDataRandomlyByPercentageAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
OutputSlotMapParameterCollection |
DistributeDataRandomlyByCountAlgorithm.getCounts() |
OutputSlotMapParameterCollection |
DistributeDataRandomlyByPercentageAlgorithm.getWeights() |
| Modifier and Type | Class and Description |
|---|---|
class |
CrasherAlgorithm |
class |
MultiIterationStepCheckerAlgorithm |
class |
SingleIterationStepCheckerAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
String |
CrasherAlgorithm.getErrorExplanation() |
String |
CrasherAlgorithm.getErrorSolution() |
String |
CrasherAlgorithm.getErrorTitle() |
JIPipeExpressionParameter |
MultiIterationStepCheckerAlgorithm.getFilter() |
JIPipeExpressionParameter |
SingleIterationStepCheckerAlgorithm.getFilter() |
OptionalTextAnnotationNameParameter |
MultiIterationStepCheckerAlgorithm.getIterationStepIndexAnnotation() |
OptionalTextAnnotationNameParameter |
SingleIterationStepCheckerAlgorithm.getIterationStepIndexAnnotation() |
boolean |
MultiIterationStepCheckerAlgorithm.isEnableFilter() |
boolean |
SingleIterationStepCheckerAlgorithm.isEnableFilter() |
boolean |
MultiIterationStepCheckerAlgorithm.isKeepOriginalAnnotations() |
boolean |
SingleIterationStepCheckerAlgorithm.isKeepOriginalAnnotations() |
| Modifier and Type | Class and Description |
|---|---|
class |
GetJIPipeSlotFolderAlgorithm |
class |
JIPipeProjectParameterDefinition |
class |
PathsToJIPipeProjectParametersAlgorithm |
class |
RunJIPipeProjectAlgorithm
Runs a JIPipe project
|
| Modifier and Type | Method and Description |
|---|---|
String |
GetJIPipeSlotFolderAlgorithm.getCompartmentId() |
String |
GetJIPipeSlotFolderAlgorithm.getNodeId() |
InputSlotMapParameterCollection |
PathsToJIPipeProjectParametersAlgorithm.getParameterKeyAssignments() |
Path |
RunJIPipeProjectAlgorithm.getProjectFile() |
String |
GetJIPipeSlotFolderAlgorithm.getSlotName() |
OptionalIntegerParameter |
RunJIPipeProjectAlgorithm.getThreads() |
void |
PathsToJIPipeProjectParametersAlgorithm.importParametersFromProject(JIPipeWorkbench workbench) |
void |
JIPipeProjectParameterDefinition.importParametersFromProject(JIPipeWorkbench workbench) |
void |
GetJIPipeSlotFolderAlgorithm.importParametersFromProject(JIPipeWorkbench workbench) |
boolean |
RunJIPipeProjectAlgorithm.isIgnoreValidation() |
| Modifier and Type | Class and Description |
|---|---|
class |
RunProcessIteratingAlgorithm |
class |
RunProcessMergingAlgorithm |
| Modifier and Type | Method and Description |
|---|---|
OptionalJIPipeExpressionParameter |
RunProcessIteratingAlgorithm.getOverrideArguments() |
OptionalJIPipeExpressionParameter |
RunProcessMergingAlgorithm.getOverrideArguments() |
ProcessEnvironment |
RunProcessIteratingAlgorithm.getProcessEnvironment() |
ProcessEnvironment |
RunProcessMergingAlgorithm.getProcessEnvironment() |
boolean |
RunProcessIteratingAlgorithm.isCleanUpAfterwards() |
boolean |
RunProcessMergingAlgorithm.isCleanUpAfterwards() |
boolean |
RunProcessIteratingAlgorithm.isOutputOutputFolder() |
boolean |
RunProcessMergingAlgorithm.isOutputOutputFolder() |
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeOutputData |
| Modifier and Type | Method and Description |
|---|---|
static SetJIPipeDocumentation |
DocumentationUtils.createDocumentation(String name,
String description) |
static SetJIPipeDocumentation |
DocumentationUtils.createDocumentation(String name,
String descriptionResourceURL,
Class<?> descriptionResourceClass) |
| Modifier and Type | Method and Description |
|---|---|
static String |
DocumentationUtils.getDocumentationDescription(SetJIPipeDocumentation documentation)
Returns the documentation description string if available.
|
static String |
DocumentationUtils.getDocumentationDescription(SetJIPipeDocumentation documentation,
Class<?> klass)
Returns the documentation description string if available.
|
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