| Constructor and Description |
|---|
JIPipeIteratingAlgorithm(JIPipeIteratingAlgorithm other)
Copies the algorithm
|
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateWithData |
class |
MergeAnnotations
Algorithm that merges the annotations of all inputs and outputs the data with the shared annotations
|
class |
OverwriteAnnotations |
| Modifier and Type | Class and Description |
|---|---|
class |
CLIJCommandNode |
| Modifier and Type | Class and Description |
|---|---|
class |
Clij2ExecuteKernelIterating |
| Modifier and Type | Class and Description |
|---|---|
class |
ConcatenatePaths
Applies subfolder navigation to each input folder
|
class |
CopyPath
Applies subfolder navigation to each input folder
|
class |
ExportData |
class |
RelativizePaths
Applies subfolder navigation to each input folder
|
| Modifier and Type | Class and Description |
|---|---|
class |
SpotDetectorNode |
class |
SpotsToRGBNode |
| Modifier and Type | Class and Description |
|---|---|
class |
FollowSpotsPerTrackNode |
class |
TrackingNode |
class |
TracksToRGBNode |
| Modifier and Type | Class and Description |
|---|---|
class |
ImportWekaModelFromFileAlgorithm |
class |
WekaClassification2DAlgorithm |
class |
WekaClassification3DAlgorithm |
class |
WekaTrainingLabels2DAlgorithm |
class |
WekaTrainingMask2DAlgorithm |
class |
WekaTrainingROI2DAlgorithm |
class |
WekaTrainingROI3DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ImageJ2OpNode |
| Modifier and Type | Class and Description |
|---|---|
class |
MacroWrapperAlgorithm
An algorithm that wraps around an ImageJ macro
|
| Modifier and Type | Class and Description |
|---|---|
class |
AnalyzeSkeleton2D3DAlgorithm |
class |
AnnotateByImageStatisticsExpressionAlgorithm
Wrapper around
RoiManager |
class |
ImageStatisticsAlgorithm
Wrapper around
RoiManager |
class |
ImageStatisticsExpressionAlgorithm
Wrapper around
RoiManager |
| Modifier and Type | Class and Description |
|---|---|
class |
BitwiseLogicalOperationAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
Coloc2Node |
| Modifier and Type | Class and Description |
|---|---|
class |
BlendImagesAlgorithm |
class |
MergeChannelsAlgorithm
Wrapper around
ImageProcessor |
class |
OverlayImagesAlgorithm
Deprecated.
Use
BlendImagesAlgorithm instead |
class |
SetToColorAlgorithm |
class |
SetToValueAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ConvolveByImage2DAlgorithm
Wrapper around
Convolver |
| Modifier and Type | Class and Description |
|---|---|
class |
OMEImageFromImagePlus |
| Modifier and Type | Class and Description |
|---|---|
class |
MontageToStackAlgorithm
Implementation of
MontageMaker |
class |
StackCombinerAlgorithm |
class |
StackToMontageAlgorithm
Implementation of
MontageMaker |
| Modifier and Type | Class and Description |
|---|---|
class |
ExportImage2Algorithm |
class |
ExportImageAlgorithm |
class |
ExportROIAlgorithm |
class |
ExportTableAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateWithOverlapMeasureLabelsAlgorithm |
class |
ExtractLabelStatisticsAlgorithm |
class |
MergeLabelsAlgorithm |
class |
MergeSmallLabelsAlgorithm |
class |
OverlapMeasureLabelsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
FilterLabelsByMaskAlgorithm |
class |
FilterLabelsByOverlapAlgorithm |
class |
FilterLabelsByStatisticsAlgorithm
Wrapper around
RoiManager |
| Modifier and Type | Class and Description |
|---|---|
class |
SetLUTFromImageAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ImageCalculator2DAlgorithm
Wrapper around
ImageProcessor |
class |
ImageCalculator2DExpression |
| Modifier and Type | Class and Description |
|---|---|
class |
GeodesicDistanceMap2DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ImposeMaxima2DAlgorithm |
class |
ImposeMaxima3DAlgorithm |
class |
LocalImageCalculator2DExpression |
| Modifier and Type | Class and Description |
|---|---|
class |
GrayscaleAttributeFiltering2DAlgorithm |
class |
GrayscaleAttributeFiltering3DAlgorithm |
class |
MorphologicalReconstruction2DAlgorithm |
class |
MorphologicalReconstruction3DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
SetOverlayAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
CropToRoiAlgorithm |
class |
ExtractImageInRoiAlgorithm |
class |
GetRoiImageAlgorithm
Wrapper around
RoiManager |
class |
SetRoiImageAlgorithm
Wrapper around
RoiManager |
class |
SplitRoiConnectedComponentsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ExtractFromROIAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ROIToLabelsByNameAlgorithm |
class |
ROIToLabelsExpressionAlgorithm |
class |
RoiToMaskAlgorithm
Wrapper around
RoiManager |
class |
RoiToRGBAlgorithm
Wrapper around
RoiDrawer |
| Modifier and Type | Class and Description |
|---|---|
class |
DrawOvalRoiAlgorithm |
class |
DrawRectangleRoiAlgorithm |
class |
DrawScaleBarRoiAlgorithm |
class |
DrawTextRoiAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
FilterROIByOverlapAlgorithm |
class |
FilterRoiByStatisticsAlgorithm
Wrapper around
RoiManager |
class |
FilterRoiByStatisticsScriptAlgorithm
Wrapper around
RoiManager |
class |
RemoveBorderRoisAlgorithm
Wrapper around
RoiManager |
| Modifier and Type | Class and Description |
|---|---|
class |
ReferencedAppendRectangularRoiAlgorithm
Deprecated.
|
class |
ReferencedDefineRectangularRoiAlgorithm
Deprecated.
|
| Modifier and Type | Class and Description |
|---|---|
class |
RoiStatisticsAlgorithm
Wrapper around
RoiManager |
| Modifier and Type | Class and Description |
|---|---|
class |
FilterAndMergeRoiByStatisticsScriptAlgorithm
Wrapper around
RoiManager |
| Modifier and Type | Class and Description |
|---|---|
class |
ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm |
class |
ChangeRoiPropertiesFromExpressionsAlgorithm
Wrapper around
RoiManager |
class |
ColorRoiByStatisticsAlgorithm
Wrapper around
RoiManager |
class |
RoiFloodFillAlgorithm
Wrapper around
RoiManager |
| Modifier and Type | Class and Description |
|---|---|
class |
SetRoiMetadataByStatisticsAlgorithm
Wrapper around
RoiManager |
class |
SetROIMetadataFromTableAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
SortAndExtractRoiByStatisticsAlgorithm
Deprecated.
|
class |
SortAndExtractRoiByStatisticsAlgorithm2
Wrapper around
RoiManager |
class |
SortRoiListByExpressionsAndMeasurementsAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
ClassicWatershedSegmentationAlgorithm |
class |
SeededWatershedSegmentationAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
AverageKeyValueThresholdStatisticsGenerator |
class |
FastKeyValueThresholdStatisticsGenerator |
class |
KeyValueAveragesGenerator |
class |
KeyValueHistogramGenerator |
class |
KeyValueThresholdPartitionAveragesGenerator |
class |
KeyValueThresholdPartitionGenerator |
class |
KeyValueThresholdStatisticsGenerator |
| Modifier and Type | Class and Description |
|---|---|
class |
AutoThreshold2DAlgorithm
Thresholding node that thresholds via an auto threshold
|
class |
CustomAutoThreshold2D16UAlgorithm
Thresholding node that thresholds via an auto threshold
|
class |
CustomAutoThreshold2D32FAlgorithm
Thresholding node that thresholds via an auto threshold
|
class |
CustomAutoThreshold2D8UAlgorithm
Thresholding node that thresholds via an auto threshold
|
| Modifier and Type | Class and Description |
|---|---|
class |
IterativeThresholdByROIStatistics2DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
MergeImagesAlgorithm |
class |
TransformEqualizeDimensionsAlgorithm |
class |
TransformExpandCanvas2DAlgorithm |
class |
Warp2DAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
SimpleImageAndRoiIteratingAlgorithm
Image processor algorithm that optionally takes a ROI
|
| Modifier and Type | Class and Description |
|---|---|
class |
MergeParametersAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
IteratingJythonScriptAlgorithm
An algorithm that allows to run Python code
|
class |
IteratingPythonScriptAlgorithm
An algorithm that allows to run Python code
|
| Modifier and Type | Class and Description |
|---|---|
class |
IteratingRScriptAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotateDataWithTableValues |
| Modifier and Type | Class and Description |
|---|---|
class |
MergeTableColumnsSupplementAlgorithm
Algorithm that integrates columns
|
| Modifier and Type | Class and Description |
|---|---|
class |
PathsToJIPipeProjectParametersAlgorithm |
| Modifier and Type | Class and Description |
|---|---|
class |
RunProcessIteratingAlgorithm |
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