Uses of Class
org.hkijena.jipipe.api.annotation.JIPipeTextAnnotation

Packages that use JIPipeTextAnnotation

Package	Description
org.hkijena.jipipe.api.annotation
org.hkijena.jipipe.api.data
org.hkijena.jipipe.api.nodes
org.hkijena.jipipe.extensions.annotation.algorithms
org.hkijena.jipipe.extensions.cellpose
org.hkijena.jipipe.extensions.clij2.algorithms
org.hkijena.jipipe.extensions.expressions
org.hkijena.jipipe.extensions.filesystem.datasources
org.hkijena.jipipe.extensions.forms.algorithms
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.forms
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io
org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.measure
org.hkijena.jipipe.extensions.imagejdatatypes.algorithms
org.hkijena.jipipe.extensions.imagejdatatypes.util
org.hkijena.jipipe.extensions.omero.algorithms
org.hkijena.jipipe.extensions.omero.datasources
org.hkijena.jipipe.extensions.omero.util
org.hkijena.jipipe.extensions.parameters.library.primitives.optional
org.hkijena.jipipe.extensions.python
org.hkijena.jipipe.extensions.python.algorithms
org.hkijena.jipipe.extensions.r
org.hkijena.jipipe.extensions.tables.datatypes
org.hkijena.jipipe.extensions.utils.algorithms
org.hkijena.jipipe.extensions.utils.algorithms.datatable

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.api.annotation

Methods in org.hkijena.jipipe.api.annotation that return types with arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
static List<JIPipeTextAnnotation>	JIPipeTextAnnotation.extractAnnotationsFromPython(org.python.core.PyDictionary annotationDict) Sets annotations from a Python dictionary
static List<JIPipeTextAnnotation>	JIPipeTextAnnotation.mapToAnnotationList(Map<String,String> map) Converts an annotation map to a list
List<JIPipeTextAnnotation>	JIPipeTextAnnotationMergeMode.merge(Collection<JIPipeTextAnnotation> annotations) Ensures that a list of annotations has unique names.

Methods in org.hkijena.jipipe.api.annotation with parameters of type JIPipeTextAnnotation

Modifier and Type	Method and Description
int	JIPipeTextAnnotation.compareTo(JIPipeTextAnnotation o)
boolean	JIPipeTextAnnotation.nameEquals(JIPipeTextAnnotation other) Returns true if the names are equal
static boolean	JIPipeTextAnnotation.nameEquals(JIPipeTextAnnotation lhs, JIPipeTextAnnotation rhs) Returns true if both have the same name.

Method parameters in org.hkijena.jipipe.api.annotation with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
static Map<String,String>	JIPipeTextAnnotation.annotationListToMap(Collection<JIPipeTextAnnotation> annotations, JIPipeTextAnnotationMergeMode mergeStrategy) Converts a set of annotations to a map
static org.python.core.PyDictionary	JIPipeTextAnnotation.annotationListToPython(Collection<JIPipeTextAnnotation> annotations) Converts a list of annotations into a Python dictionary
static org.python.core.PyDictionary	JIPipeTextAnnotation.annotationMapToPython(Map<String,JIPipeTextAnnotation> annotationMap) Converts a map of annotations into a Python dictionary
List<JIPipeTextAnnotation>	JIPipeTextAnnotationMergeMode.merge(Collection<JIPipeTextAnnotation> annotations) Ensures that a list of annotations has unique names.
void	JIPipeTextAnnotationMergeMode.mergeInto(Map<String,JIPipeTextAnnotation> target, Collection<JIPipeTextAnnotation> annotations) Ensures that a list of annotations has unique names.
void	JIPipeTextAnnotationMergeMode.mergeInto(Map<String,JIPipeTextAnnotation> target, Collection<JIPipeTextAnnotation> annotations) Ensures that a list of annotations has unique names.
static void	JIPipeTextAnnotation.setAnnotationsFromPython(org.python.core.PyDictionary annotationDict, Map<String,JIPipeTextAnnotation> target) Sets annotations from a Python dictionary

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.api.data

Methods in org.hkijena.jipipe.api.data that return JIPipeTextAnnotation

Modifier and Type	Method and Description
JIPipeTextAnnotation	JIPipeDataTable.getTextAnnotation(int row, int column) Gets an annotation at a specific index
JIPipeTextAnnotation	JIPipeDataTable.getTextAnnotation(int row, String column) Gets an annotation at a specific column
JIPipeTextAnnotation	JIPipeDataTable.getTextAnnotationOr(int row, String name, JIPipeTextAnnotation orElse) Returns the annotation of specified type or the alternative value.

Methods in org.hkijena.jipipe.api.data that return types with arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
List<JIPipeTextAnnotation>	JIPipeDataTable.getAllTextAnnotations() Gets the list of all text annotations
Map<String,JIPipeTextAnnotation>	JIPipeDataTable.getAnnotationMap(int row) Deprecated. Use getTextAnnotationMap instead
Map<String,JIPipeTextAnnotation>	JIPipeDataTable.getTextAnnotationMap(int row) Returns annotations of a row as map
List<JIPipeTextAnnotation>	JIPipeDataTableMetadataRow.getTextAnnotations()
List<JIPipeTextAnnotation>	JIPipeDataTable.getTextAnnotations(Collection<Integer> rows) Gets the list of annotations for specific data rows
List<JIPipeTextAnnotation>	JIPipeDataTable.getTextAnnotations(int row) Gets the list of annotations for a specific data row

Methods in org.hkijena.jipipe.api.data with parameters of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	JIPipeDataTable.addAnnotationToAllData(JIPipeTextAnnotation annotation, boolean overwrite) Deprecated. use addTextAnnotationToAllData()
void	JIPipeDataTable.addTextAnnotationToAllData(JIPipeTextAnnotation annotation, boolean overwrite) Adds an annotation to all existing data
JIPipeTextAnnotation	JIPipeDataTable.getTextAnnotationOr(int row, String name, JIPipeTextAnnotation orElse) Returns the annotation of specified type or the alternative value.
void	JIPipeDataTable.setTextAnnotation(int row, JIPipeTextAnnotation annotation) Sets a text annotation

Method parameters in org.hkijena.jipipe.api.data with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	JIPipeDataTable.addData(JIPipeData value, List<JIPipeTextAnnotation> annotations, JIPipeTextAnnotationMergeMode mergeStrategy, JIPipeProgressInfo progressInfo) Adds a data row
void	JIPipeDataTable.addData(JIPipeData data, List<JIPipeTextAnnotation> annotations, JIPipeTextAnnotationMergeMode mergeStrategy, List<JIPipeDataAnnotation> dataAnnotations, JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy) Adds data as virtual data reference
void	JIPipeDataTable.addData(JIPipeVirtualData virtualData, List<JIPipeTextAnnotation> annotations, JIPipeTextAnnotationMergeMode mergeStrategy) Adds data as virtual data reference
void	JIPipeDataTable.addData(JIPipeVirtualData virtualData, List<JIPipeTextAnnotation> annotations, JIPipeTextAnnotationMergeMode mergeStrategy, List<JIPipeDataAnnotation> dataAnnotations, JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy) Adds data as virtual data reference
int	JIPipeDataTable.findRowWithAnnotations(List<JIPipeTextAnnotation> annotations) Finds the row that matches the given annotations
void	JIPipeDataTableMetadataRow.setAnnotations(List<JIPipeTextAnnotation> annotations) Compatibility function to allow reading tables in an older format
void	JIPipeDataTableMetadataRow.setTextAnnotations(List<JIPipeTextAnnotation> textAnnotations) Sets annotations
void	JIPipeDataTableMetadataRow.setTraits(List<JIPipeTextAnnotation> annotations) Compatibility function to allow reading tables in an older format

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.api.nodes

Methods in org.hkijena.jipipe.api.nodes that return JIPipeTextAnnotation

Modifier and Type	Method and Description
JIPipeTextAnnotation	JIPipeDataBatch.getMergedTextAnnotation(String name) Returns a merged annotation
JIPipeTextAnnotation	JIPipeMergingDataBatch.getMergedTextAnnotation(String name) Returns a merged annotation

Methods in org.hkijena.jipipe.api.nodes that return types with arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
Map<String,JIPipeTextAnnotation>	JIPipeDataBatch.getMergedTextAnnotations() Gets the list of annotations.
Map<String,JIPipeTextAnnotation>	JIPipeMergingDataBatch.getMergedTextAnnotations() Gets the list of annotations.
List<JIPipeTextAnnotation>	JIPipeMergingDataBatch.getOriginalAnnotations(JIPipeDataSlot slot) Gets the original annotations of given slot
List<JIPipeTextAnnotation>	JIPipeMergingDataBatch.getOriginalAnnotations(String slotName) Gets the original annotations of given slot
List<JIPipeTextAnnotation>	JIPipeDataBatch.getOriginalTextAnnotations(JIPipeDataSlot slot) Gets the original annotations of given slot
List<JIPipeTextAnnotation>	JIPipeDataBatch.getOriginalTextAnnotations(String slotName) Gets the original annotations of given slot

Methods in org.hkijena.jipipe.api.nodes with parameters of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	JIPipeDataBatch.addMergedTextAnnotation(JIPipeTextAnnotation annotation, JIPipeTextAnnotationMergeMode strategy) Adds an annotation to the annotation list
void	JIPipeMergingDataBatch.addMergedTextAnnotation(JIPipeTextAnnotation annotation, JIPipeTextAnnotationMergeMode strategy) Adds an annotation to the annotation list

Method parameters in org.hkijena.jipipe.api.nodes with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	JIPipeDataBatch.addMergedTextAnnotations(Collection<JIPipeTextAnnotation> annotations, JIPipeTextAnnotationMergeMode strategy) Adds annotations to the merged annotation storage of this interface.
void	JIPipeMergingDataBatch.addMergedTextAnnotations(List<JIPipeTextAnnotation> annotations, JIPipeTextAnnotationMergeMode strategy) Adds annotations to the merged annotation storage of this interface.
void	JIPipeDataBatch.addOutputData(JIPipeDataSlot slot, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode mergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
void	JIPipeMergingDataBatch.addOutputData(JIPipeDataSlot slot, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode mergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
void	JIPipeDataBatch.addOutputData(JIPipeDataSlot slot, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode mergeStrategy, List<JIPipeDataAnnotation> additionalDataAnnotations, JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
void	JIPipeMergingDataBatch.addOutputData(JIPipeDataSlot slot, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode mergeStrategy, List<JIPipeDataAnnotation> additionalDataAnnotations, JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
void	JIPipeMergingDataBatch.addOutputData(JIPipeDataSlot slot, JIPipeVirtualData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode mergeStrategy) Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
void	JIPipeMergingDataBatch.addOutputData(JIPipeDataSlot slot, JIPipeVirtualData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode annotationMergeStrategy, List<JIPipeDataAnnotation> additionalDataAnnotations, JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy)
void	JIPipeDataBatch.addOutputData(JIPipeDataSlot slot, JIPipeVirtualData virtualData, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode mergeStrategy, List<JIPipeDataAnnotation> additionalDataAnnotations, JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
void	JIPipeMergingDataBatch.addOutputData(String slotName, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations should be set up till this point
void	JIPipeDataBatch.addOutputData(String slotName, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode mergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations should be set up till this point
void	JIPipeMergingDataBatch.addOutputData(String slotName, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode annotationMergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations should be set up till this point
void	JIPipeDataBatch.addOutputData(String slotName, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode mergeStrategy, List<JIPipeDataAnnotation> additionalDataAnnotations, JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations should be set up till this point
void	JIPipeMergingDataBatch.addOutputData(String slotName, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode mergeStrategy, List<JIPipeDataAnnotation> additionalDataAnnotations, JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations should be set up till this point
void	JIPipeMergingDataBatch.addOutputData(String slotName, JIPipeVirtualData data, JIPipeTextAnnotationMergeMode annotationMergeStrategy, List<JIPipeTextAnnotation> additionalAnnotations) Writes output data into the provided slot Please note that annotations should be set up till this point
void	JIPipeMergingDataBatch.addOutputData(String slotName, JIPipeVirtualData data, List<JIPipeTextAnnotation> additionalAnnotations) Writes output data into the provided slot Please note that annotations should be set up till this point
void	JIPipeSingleIterationAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	JIPipeIteratingMissingDataGeneratorAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	JIPipeMergingAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
abstract void	JIPipeParameterSlotAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations) Runs a parameter set iteration
void	JIPipeMissingDataGeneratorAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	JIPipeIteratingAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	JIPipeSimpleIteratingAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	JIPipeDataBatch.setMergedTextAnnotations(Map<String,JIPipeTextAnnotation> annotations)
void	JIPipeMergingDataBatch.setMergedTextAnnotations(Map<String,JIPipeTextAnnotation> annotations)

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.extensions.annotation.algorithms

Method parameters in org.hkijena.jipipe.extensions.annotation.algorithms with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
String	AnnotationFilterExpression.generateAnnotationValue(Collection<JIPipeTextAnnotation> annotations, ExpressionVariables variableSet) Generates an annotation value
void	GenerateRandomUniqueAnnotation.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	RemoveArrayAnnotationsAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	RemoveNAAnnotationColumnsAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	AnnotateWithAnnotationTable.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
boolean	AnnotationFilterExpression.test(Collection<JIPipeTextAnnotation> annotations, String dataString, ExpressionVariables variables) Evaluates the expression as boolean

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.extensions.cellpose

Method parameters in org.hkijena.jipipe.extensions.cellpose with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
static void	CellposeUtils.extractCellposeOutputs(JIPipeMergingDataBatch dataBatch, JIPipeProgressInfo progressInfo, Path outputRoiOutline, Path outputLabels, Path outputFlows, Path outputProbabilities, Path outputStyles, List<JIPipeTextAnnotation> annotationList, CellposeSegmentationOutputSettings_Old outputParameters)

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.extensions.clij2.algorithms

Method parameters in org.hkijena.jipipe.extensions.clij2.algorithms with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	Clij2ExecuteKernelIterating.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	Clij2ExecuteKernelSimpleIterating.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.extensions.expressions

Methods in org.hkijena.jipipe.extensions.expressions that return JIPipeTextAnnotation

Modifier and Type	Method and Description
JIPipeTextAnnotation	NamedTextAnnotationGeneratorExpression.generateTextAnnotation(Collection<JIPipeTextAnnotation> annotations, ExpressionVariables variableSet) Generates an annotation
JIPipeTextAnnotation	AnnotationQueryExpression.queryFirst(Collection<JIPipeTextAnnotation> annotations) Generates an annotation value

Methods in org.hkijena.jipipe.extensions.expressions that return types with arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
List<JIPipeTextAnnotation>	AnnotationQueryExpression.queryAll(Collection<JIPipeTextAnnotation> annotations) Returns all annotations that match the query

Method parameters in org.hkijena.jipipe.extensions.expressions with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
String	AnnotationGeneratorExpression.generateAnnotationValue(Collection<JIPipeTextAnnotation> annotations, ExpressionVariables variableSet) Generates an annotation value
JIPipeTextAnnotation	NamedTextAnnotationGeneratorExpression.generateTextAnnotation(Collection<JIPipeTextAnnotation> annotations, ExpressionVariables variableSet) Generates an annotation
void	ExpressionVariables.putAnnotations(List<JIPipeTextAnnotation> textAnnotations)
void	ExpressionVariables.putAnnotations(Map<String,JIPipeTextAnnotation> mergedTextAnnotations)
List<JIPipeTextAnnotation>	AnnotationQueryExpression.queryAll(Collection<JIPipeTextAnnotation> annotations) Returns all annotations that match the query
JIPipeTextAnnotation	AnnotationQueryExpression.queryFirst(Collection<JIPipeTextAnnotation> annotations) Generates an annotation value
boolean	AnnotationGeneratorExpression.test(Collection<JIPipeTextAnnotation> annotations, String dataString, ExpressionVariables variables) Evaluates the expression as boolean

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.extensions.filesystem.datasources

Method parameters in org.hkijena.jipipe.extensions.filesystem.datasources with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	TemporaryFolderDataSource.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	TemporaryFileDataSource.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.extensions.forms.algorithms

Method parameters in org.hkijena.jipipe.extensions.forms.algorithms with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
static void	IteratingFormProcessorAlgorithm.extractRestoredAnnotations(JIPipeMergingDataBatch dataBatch, Map<String,JIPipeTextAnnotation> preFormAnnotations, JIPipeDataSlot inputSlot, int row, List<JIPipeTextAnnotation> annotations) Extracts original annotations into the annotation list
static void	IteratingFormProcessorAlgorithm.extractRestoredAnnotations(JIPipeMergingDataBatch dataBatch, Map<String,JIPipeTextAnnotation> preFormAnnotations, JIPipeDataSlot inputSlot, int row, List<JIPipeTextAnnotation> annotations) Extracts original annotations into the annotation list

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.forms

Method parameters in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.forms with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	DrawROIAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	DrawMaskAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io

Method parameters in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.io with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	ExportImageAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	ExportROIAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	ExportImage2Algorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	ExportTableAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.measure

Method parameters in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.measure with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	CountROIAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms

Method parameters in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	BioFormatsExporter.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.extensions.imagejdatatypes.util

Method parameters in org.hkijena.jipipe.extensions.imagejdatatypes.util with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
static void	ImagePlusPropertiesExpressionParameterVariableSource.extractValues(ExpressionVariables variables, ij.ImagePlus imagePlus, Collection<JIPipeTextAnnotation> annotations)

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.extensions.omero.algorithms

Method parameters in org.hkijena.jipipe.extensions.omero.algorithms with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	UploadOMEROImageAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	DownloadOMEROTableAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	DownloadOMEROImageAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.extensions.omero.datasources

Method parameters in org.hkijena.jipipe.extensions.omero.datasources with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	OMEROFindGroupAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	OMEROFindDatasetAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	OMEROFindImageAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.extensions.omero.util

Method parameters in org.hkijena.jipipe.extensions.omero.util with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
List<Long>	OMEROImageUploader.upload(Path imagePath, List<JIPipeTextAnnotation> annotationList, OMEROGateway gateway)

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.extensions.parameters.library.primitives.optional

Methods in org.hkijena.jipipe.extensions.parameters.library.primitives.optional that return JIPipeTextAnnotation

Modifier and Type	Method and Description
JIPipeTextAnnotation	OptionalAnnotationNameParameter.createAnnotation(Collection<String> values) Creates a new annotation with the defined name and value
JIPipeTextAnnotation	OptionalAnnotationNameParameter.createAnnotation(String value) Creates a new annotation with the defined name and value
JIPipeTextAnnotation	OptionalAnnotationNameParameter.createAnnotation(String[] values) Creates a new annotation with the defined name and value

Method parameters in org.hkijena.jipipe.extensions.parameters.library.primitives.optional with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	OptionalAnnotationNameParameter.addAnnotationIfEnabled(Collection<JIPipeTextAnnotation> annotations, Collection<String> values) Adds the annotation with given value of the parameter is enabled
void	OptionalAnnotationNameParameter.addAnnotationIfEnabled(Collection<JIPipeTextAnnotation> annotations, String value) Adds the annotation with given value of the parameter is enabled
void	OptionalAnnotationNameParameter.addAnnotationIfEnabled(Collection<JIPipeTextAnnotation> annotations, String[] values) Adds the annotation with given value of the parameter is enabled

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.extensions.python

Method parameters in org.hkijena.jipipe.extensions.python with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
static void	PythonUtils.annotationsToPython(StringBuilder code, Collection<JIPipeTextAnnotation> annotations) Converts annotations into Python code.

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.extensions.python.algorithms

Method parameters in org.hkijena.jipipe.extensions.python.algorithms with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	JythonScriptAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	PythonScriptAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.extensions.r

Method parameters in org.hkijena.jipipe.extensions.r with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
static void	RUtils.textAnnotationsToR(StringBuilder code, Collection<JIPipeTextAnnotation> annotations) Converts annotations into R code.

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.extensions.tables.datatypes

Methods in org.hkijena.jipipe.extensions.tables.datatypes that return types with arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
List<JIPipeTextAnnotation>	AnnotationTableData.getAnnotations(int row) Gets all annotations at the specified row

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.extensions.utils.algorithms

Method parameters in org.hkijena.jipipe.extensions.utils.algorithms with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	SelectDataTableRowsAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	SleepAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	SortRowsByExpressionAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	DataSlicer.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	SortRowsByAnnotationsAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.extensions.utils.algorithms.datatable

Method parameters in org.hkijena.jipipe.extensions.utils.algorithms.datatable with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	ExtractTableAlgorithm.runParameterSet(JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)