Modifier and Type | Method and Description |
---|---|
String |
JIPipeMutableDependency.getDependencyId() |
String |
JIPipeJsonPlugin.getDependencyId() |
String |
JIPipeMutableDependency.getDependencyVersion() |
String |
JIPipeJsonPlugin.getDependencyVersion() |
String |
JIPipeImageJUpdateSiteDependency.getDescription() |
String |
JIPipeImageJUpdateSiteDependency.getMaintainer() |
JIPipeMetadata |
JIPipeMutableDependency.getMetadata() |
JIPipeMetadata |
JIPipeJsonPlugin.getMetadata() |
String |
JIPipeImageJUpdateSiteDependency.getName() |
JIPipeImageJUpdateSiteDependency.List |
JIPipeJsonPlugin.getUpdateSiteDependenciesParameter() |
String |
JIPipeImageJUpdateSiteDependency.getUrl() |
void |
JIPipeMutableDependency.setDependencyId(String dependencyId)
Sets the ID
|
void |
JIPipeMutableDependency.setDependencyVersion(String dependencyVersion)
Sets the version
|
void |
JIPipeImageJUpdateSiteDependency.setDescription(String description) |
void |
JIPipeJsonPlugin.setId(String id)
Sets the ID
|
void |
JIPipeImageJUpdateSiteDependency.setMaintainer(String maintainer) |
void |
JIPipeImageJUpdateSiteDependency.setName(String name) |
void |
JIPipeJsonPlugin.setUpdateSiteDependenciesParameter(JIPipeImageJUpdateSiteDependency.List updateSiteDependenciesParameter) |
void |
JIPipeImageJUpdateSiteDependency.setUrl(String url) |
void |
JIPipeJsonPlugin.setVersion(String version)
Sets the version
|
Modifier and Type | Method and Description |
---|---|
JIPipeAuthorMetadata.List |
JIPipeMetadata.getAcknowledgements()
Gets the list of acknowledged authors
|
StringList |
JIPipeAuthorMetadata.getAffiliations() |
JIPipeAuthorMetadata.List |
JIPipeMetadata.getAuthors() |
Color |
JIPipeNodeTemplate.getBorderColor() |
PluginCategoriesEnumParameter.List |
JIPipeMetadata.getCategories() |
String |
JIPipeMetadata.getCitation() |
String |
JIPipeAuthorMetadata.getContact() |
HTMLText |
JIPipeAuthorMetadata.getCustomText() |
String |
JIPipeNodeTemplate.getData() |
StringList |
JIPipeMetadata.getDependencyCitations() |
HTMLText |
JIPipeNodeTemplate.getDescription() |
HTMLText |
JIPipeMetadata.getDescription() |
ParameterCollectionList |
JIPipeProjectDirectories.getDirectories() |
JIPipeProjectDirectories |
JIPipeProjectMetadata.getDirectories() |
Color |
JIPipeNodeTemplate.getFillColor() |
String |
JIPipeAuthorMetadata.getFirstName() |
IconRef |
JIPipeNodeTemplate.getIcon() |
String |
JIPipeProjectDirectories.DirectoryEntry.getKey() |
String |
JIPipeAuthorMetadata.getLastName() |
String |
JIPipeMetadata.getLicense() |
StringList |
JIPipeNodeTemplate.getMenuPath() |
String |
JIPipeNodeTemplate.getName() |
String |
JIPipeMetadata.getName() |
JIPipeNodeTemplate.List |
JIPipeProjectMetadata.getNodeTemplates() |
Path |
JIPipeProjectDirectories.DirectoryEntry.getPath() |
JIPipeProjectPermissions |
JIPipeProjectMetadata.getPermissions() |
String |
JIPipeNodeTemplate.getSource() |
HTMLText |
JIPipeMetadata.getSummary() |
String |
JIPipeProjectMetadata.getTemplateDescription() |
ImageParameter |
JIPipeMetadata.getThumbnail() |
String |
JIPipeAuthorMetadata.getTitle() |
JIPipeImageJUpdateSiteDependency.List |
JIPipeProjectMetadata.getUpdateSiteDependencies() |
String |
JIPipeMetadata.getWebsite() |
String |
JIPipeAuthorMetadata.getWebsite() |
boolean |
JIPipeAuthorMetadata.isCorrespondingAuthor() |
boolean |
JIPipeAuthorMetadata.isFirstAuthor() |
boolean |
JIPipeProjectPermissions.isPreventAddingDeletingNodes() |
boolean |
JIPipeProjectPermissions.isPreventModifyingSlots() |
boolean |
JIPipeProjectMetadata.isRestoreTabs() |
void |
JIPipeMetadata.setAcknowledgements(JIPipeAuthorMetadata.List acknowledgements)
Sets the list of acknowledged authors
|
void |
JIPipeAuthorMetadata.setAffiliations(StringList affiliations) |
void |
JIPipeMetadata.setAuthors(JIPipeAuthorMetadata.List authors)
Sets the authors
|
void |
JIPipeNodeTemplate.setBorderColor(Color borderColor) |
void |
JIPipeMetadata.setCategories(PluginCategoriesEnumParameter.List categories) |
void |
JIPipeMetadata.setCitation(String citation)
Sets the citation
|
void |
JIPipeAuthorMetadata.setContact(String contact) |
void |
JIPipeAuthorMetadata.setCorrespondingAuthor(boolean correspondingAuthor) |
void |
JIPipeAuthorMetadata.setCustomText(HTMLText customText) |
void |
JIPipeNodeTemplate.setData(String data) |
void |
JIPipeMetadata.setDependencyCitations(StringList dependencyCitations) |
void |
JIPipeNodeTemplate.setDescription(HTMLText description) |
void |
JIPipeMetadata.setDescription(HTMLText description)
Sets the description
|
void |
JIPipeProjectDirectories.setDirectories(ParameterCollectionList directories) |
void |
JIPipeNodeTemplate.setFillColor(Color fillColor) |
void |
JIPipeAuthorMetadata.setFirstAuthor(boolean firstAuthor) |
void |
JIPipeAuthorMetadata.setFirstName(String firstName) |
void |
JIPipeNodeTemplate.setIcon(IconRef icon) |
void |
JIPipeProjectDirectories.DirectoryEntry.setKey(String key) |
void |
JIPipeAuthorMetadata.setLastName(String lastName) |
void |
JIPipeMetadata.setLicense(String license)
Sets the license
|
void |
JIPipeNodeTemplate.setMenuPath(StringList menuPath) |
void |
JIPipeNodeTemplate.setName(String name) |
void |
JIPipeMetadata.setName(String name)
Sets the name
|
void |
JIPipeProjectMetadata.setNodeTemplates(JIPipeNodeTemplate.List nodeTemplates) |
void |
JIPipeProjectDirectories.DirectoryEntry.setPath(Path path) |
void |
JIPipeProjectPermissions.setPreventAddingDeletingNodes(boolean preventAddingDeletingNodes) |
void |
JIPipeProjectPermissions.setPreventModifyingSlots(boolean preventModifyingSlots) |
void |
JIPipeProjectMetadata.setRestoreTabs(boolean restoreTabs) |
void |
JIPipeNodeTemplate.setSource(String source) |
void |
JIPipeMetadata.setSummary(HTMLText summary) |
void |
JIPipeProjectMetadata.setTemplateDescription(String templateDescription) |
void |
JIPipeMetadata.setThumbnail(ImageParameter thumbnail) |
void |
JIPipeAuthorMetadata.setTitle(String title) |
void |
JIPipeProjectMetadata.setUpdateSiteDependencies(JIPipeImageJUpdateSiteDependency.List updateSiteDependencies) |
void |
JIPipeMetadata.setWebsite(String website)
Sets the website
|
void |
JIPipeAuthorMetadata.setWebsite(String website) |
Modifier and Type | Method and Description |
---|---|
JIPipeExpressionParameter |
JIPipeDataByMetadataExporter.getFileNameGenerator() |
boolean |
JIPipeDataByMetadataExporter.isForceName() |
boolean |
JIPipeDataByMetadataExporter.isMakeFilesystemCompatible() |
void |
JIPipeDataByMetadataExporter.setFileNameGenerator(JIPipeExpressionParameter fileNameGenerator) |
void |
JIPipeDataByMetadataExporter.setForceName(boolean forceName) |
void |
JIPipeDataByMetadataExporter.setMakeFilesystemCompatible(boolean makeFilesystemCompatible) |
Modifier and Type | Method and Description |
---|---|
GraphNodeParameterReferenceGroupCollection |
JIPipeProjectCompartment.getExportedParameters() |
boolean |
JIPipeProjectCompartment.isShowLimitedParameters() |
void |
JIPipeProjectCompartment.setCustomName(String customName) |
void |
JIPipeProjectCompartment.setExportedParameters(GraphNodeParameterReferenceGroupCollection exportedParameters) |
void |
JIPipeProjectCompartment.setShowLimitedParameters(boolean showLimitedParameters) |
Modifier and Type | Method and Description |
---|---|
String |
ImageJDataExportOperation.getExporterId() |
String |
ImageJDataImportOperation.getImporterId() |
String |
ImageJImportParameters.getName() |
String |
ImageJExportParameters.getName() |
boolean |
ImageJExportParameters.isActivate() |
boolean |
ImageJExportParameters.isAppend() |
boolean |
ImageJImportParameters.isDuplicate() |
boolean |
ImageJExportParameters.isDuplicate() |
boolean |
ImageJExportParameters.isNoWindows() |
void |
ImageJExportParameters.setActivate(boolean activate) |
void |
ImageJExportParameters.setAppend(boolean append) |
void |
ImageJImportParameters.setDuplicate(boolean duplicate) |
void |
ImageJExportParameters.setDuplicate(boolean duplicate) |
void |
ImageJDataExportOperation.setExporterId(String exporterId) |
void |
ImageJDataImportOperation.setImporterId(String importerId) |
void |
ImageJImportParameters.setName(String name) |
void |
ImageJExportParameters.setName(String name) |
void |
ImageJExportParameters.setNoWindows(boolean noWindows) |
Modifier and Type | Method and Description |
---|---|
String |
JIPipeDataSlotInfo.getCustomName() |
String |
JIPipeDataSlotInfo.getDescription() |
boolean |
JIPipeDataSlotInfo.isOptional() |
boolean |
JIPipeDataSlotInfo.isStoreToDisk() |
boolean |
JIPipeDataSlotInfo.isVirtual() |
void |
JIPipeDataSlotInfo.setCustomName(String customName)
Overrides the name displayed in the UI
|
void |
JIPipeDataSlotInfo.setDescription(String description) |
void |
JIPipeDataSlotInfo.setOptional(boolean optional) |
void |
JIPipeDataSlotInfo.setStoreToDisk(boolean storeToDisk) |
void |
JIPipeDataSlotInfo.setVirtual(boolean virtual) |
Modifier and Type | Method and Description |
---|---|
String |
JIPipeEnvironment.getName() |
String |
JIPipeEnvironment.getSource() |
String |
JIPipeEnvironment.getVersion() |
void |
JIPipeEnvironment.setName(String name) |
void |
JIPipeEnvironment.setSource(String source) |
void |
JIPipeEnvironment.setVersion(String version) |
Modifier and Type | Method and Description |
---|---|
HTMLText |
GraphNodeParameterReference.getCustomDescription() |
String |
GraphNodeParameterReference.getCustomName() |
HTMLText |
GraphNodeParameterReferenceGroup.getDescription() |
String |
GraphNodeParameterReferenceGroup.getName() |
String |
GraphNodeParameterReference.getPath() |
void |
GraphNodeParameterReference.setCustomDescription(HTMLText customDescription) |
void |
GraphNodeParameterReference.setCustomName(String customName) |
void |
GraphNodeParameterReferenceGroup.setDescription(HTMLText description) |
void |
GraphNodeParameterReferenceGroup.setName(String name) |
void |
GraphNodeParameterReference.setPath(String path) |
Modifier and Type | Method and Description |
---|---|
JIPipeMergingAlgorithmIterationStepGenerationSettings |
LoopStartNode.getBatchGenerationSettings()
Deprecated.
|
JIPipeGraphWrapperAlgorithm.IterationMode |
LoopStartNode.getIterationMode()
Deprecated.
|
void |
LoopStartNode.setIterationMode(JIPipeGraphWrapperAlgorithm.IterationMode iterationMode)
Deprecated.
|
Modifier and Type | Method and Description |
---|---|
HTMLText |
JIPipeGraphNode.getCustomDescription()
Returns the custom description that is set by the user
|
JIPipeCustomExpressionVariablesParameter |
JIPipeAlgorithm.getDefaultCustomExpressionVariables() |
String |
JIPipeGraphNode.getName()
Returns the algorithm name
|
StringQueryExpressionAndStringPairParameter.List |
JIPipeAdaptiveParameterSettings.getOverriddenParameters() |
String |
JIPipeAdaptiveParameterSettings.getParameterAnnotationsPrefix() |
RuntimePartitionReferenceParameter |
JIPipeAlgorithm.getRuntimePartition() |
boolean |
JIPipeAdaptiveParameterSettings.isAttachOnlyNonDefaultParameterAnnotations() |
boolean |
JIPipeAdaptiveParameterSettings.isAttachParameterAnnotations() |
boolean |
JIPipeGraphNode.isBookmarked() |
boolean |
JIPipeAlgorithm.isEnabled() |
boolean |
JIPipeAdaptiveParameterSettings.isEnabled() |
boolean |
JIPipeAdaptiveParameterSettings.isParameterAnnotationsUseInternalNames() |
boolean |
JIPipeAlgorithm.isPassThrough() |
boolean |
JIPipeGraphNode.isUiLocked() |
void |
JIPipeAdaptiveParameterSettings.setAttachOnlyNonDefaultParameterAnnotations(boolean attachOnlyNonDefaultParameterAnnotations) |
void |
JIPipeAdaptiveParameterSettings.setAttachParameterAnnotations(boolean attachParameterAnnotations) |
void |
JIPipeGraphNode.setBookmarked(boolean bookmarked) |
void |
JIPipeGraphNode.setCustomDescription(HTMLText customDescription)
Sets a custom description.
|
void |
JIPipeGraphNode.setCustomName(String customName)
Sets a custom name.
|
void |
JIPipeAlgorithm.setEnabled(boolean enabled) |
void |
JIPipeAdaptiveParameterSettings.setEnabled(boolean enabled) |
void |
JIPipeAdaptiveParameterSettings.setOverriddenParameters(StringQueryExpressionAndStringPairParameter.List overriddenParameters) |
void |
JIPipeAdaptiveParameterSettings.setParameterAnnotationsPrefix(String parameterAnnotationsPrefix) |
void |
JIPipeAdaptiveParameterSettings.setParameterAnnotationsUseInternalNames(boolean parameterAnnotationsUseInternalNames) |
void |
JIPipeAlgorithm.setPassThrough(boolean passThrough) |
void |
JIPipeAlgorithm.setRuntimePartition(RuntimePartitionReferenceParameter runtimePartition) |
void |
JIPipeGraphNode.setUiLocked(boolean uiLocked) |
Modifier and Type | Method and Description |
---|---|
JIPipeAdaptiveParameterSettings |
JIPipeSingleIterationAlgorithm.getAdaptiveParameterSettings() |
JIPipeAdaptiveParameterSettings |
JIPipeMergingAlgorithm.getAdaptiveParameterSettings() |
JIPipeAdaptiveParameterSettings |
JIPipeIteratingAlgorithm.getAdaptiveParameterSettings() |
JIPipeAdaptiveParameterSettings |
JIPipeSimpleIteratingAlgorithm.getAdaptiveParameterSettings() |
JIPipeTextAnnotationMatchingMethod |
JIPipeIteratingAlgorithmIterationStepGenerationSettings.getAnnotationMatchingMethod() |
JIPipeTextAnnotationMatchingMethod |
JIPipeMergingAlgorithmIterationStepGenerationSettings.getAnnotationMatchingMethod() |
JIPipeTextAnnotationMatchingMethod |
JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.getAnnotationMatchingMethod() |
JIPipeTextAnnotationMergeMode |
JIPipeIteratingAlgorithmIterationStepGenerationSettings.getAnnotationMergeStrategy() |
JIPipeTextAnnotationMergeMode |
JIPipeMergingAlgorithmIterationStepGenerationSettings.getAnnotationMergeStrategy() |
JIPipeTextAnnotationMergeMode |
JIPipeMissingDataGeneratorIterationStepGenerationSettings.getAnnotationMergeStrategy() |
JIPipeTextAnnotationMergeMode |
JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.getAnnotationMergeStrategy() |
JIPipeTextAnnotationMergeMode |
JIPipeSingleIterationAlgorithmIterationStepGenerationSettings.getAnnotationMergeStrategy() |
JIPipeColumMatching |
JIPipeIteratingAlgorithmIterationStepGenerationSettings.getColumnMatching() |
JIPipeColumMatching |
JIPipeMergingAlgorithmIterationStepGenerationSettings.getColumnMatching() |
JIPipeColumMatching |
JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.getColumnMatching() |
JIPipeExpressionParameter |
JIPipeIteratingAlgorithmIterationStepGenerationSettings.getCustomAnnotationMatching() |
JIPipeExpressionParameter |
JIPipeMergingAlgorithmIterationStepGenerationSettings.getCustomAnnotationMatching() |
JIPipeExpressionParameter |
JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.getCustomAnnotationMatching() |
StringQueryExpression |
JIPipeIteratingAlgorithmIterationStepGenerationSettings.getCustomColumns() |
StringQueryExpression |
JIPipeMergingAlgorithmIterationStepGenerationSettings.getCustomColumns() |
StringQueryExpression |
JIPipeMissingDataGeneratorIterationStepGenerationSettings.getCustomColumns() |
StringQueryExpression |
JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.getCustomColumns() |
JIPipeDataAnnotationMergeMode |
JIPipeIteratingAlgorithmIterationStepGenerationSettings.getDataAnnotationMergeStrategy() |
JIPipeDataAnnotationMergeMode |
JIPipeMergingAlgorithmIterationStepGenerationSettings.getDataAnnotationMergeStrategy() |
JIPipeDataAnnotationMergeMode |
JIPipeMissingDataGeneratorIterationStepGenerationSettings.getDataAnnotationMergeStrategy() |
JIPipeDataAnnotationMergeMode |
JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.getDataAnnotationMergeStrategy() |
JIPipeDataAnnotationMergeMode |
JIPipeSingleIterationAlgorithmIterationStepGenerationSettings.getDataAnnotationMergeStrategy() |
JIPipeSingleIterationAlgorithmIterationStepGenerationSettings |
JIPipeSingleIterationAlgorithm.getDataBatchGenerationSettings() |
JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings |
JIPipeIteratingMissingDataGeneratorAlgorithm.getDataBatchGenerationSettings() |
JIPipeMergingAlgorithmIterationStepGenerationSettings |
JIPipeMergingAlgorithm.getDataBatchGenerationSettings() |
JIPipeParameterlessSimpleIteratingAlgorithm.IterationStepGenerationSettings |
JIPipeParameterlessSimpleIteratingAlgorithm.getDataBatchGenerationSettings() |
JIPipeMissingDataGeneratorIterationStepGenerationSettings |
JIPipeMissingDataGeneratorAlgorithm.getDataBatchGenerationSettings() |
JIPipeIteratingAlgorithmIterationStepGenerationSettings |
JIPipeIteratingAlgorithm.getDataBatchGenerationSettings() |
JIPipeSimpleIteratingAlgorithmIterationStepGenerationSettings |
JIPipeSimpleIteratingAlgorithm.getDataBatchGenerationSettings() |
JIPipeColumMatching |
JIPipeMissingDataGeneratorIterationStepGenerationSettings.getDataSetMatching() |
OptionalIntegerRange |
JIPipeParameterlessSimpleIteratingAlgorithm.IterationStepGenerationSettings.getLimit() |
OptionalIntegerRange |
JIPipeIteratingAlgorithmIterationStepGenerationSettings.getLimit() |
OptionalIntegerRange |
JIPipeMergingAlgorithmIterationStepGenerationSettings.getLimit() |
OptionalIntegerRange |
JIPipeMissingDataGeneratorIterationStepGenerationSettings.getLimit() |
OptionalIntegerRange |
JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.getLimit() |
OptionalIntegerRange |
JIPipeSimpleIteratingAlgorithmIterationStepGenerationSettings.getLimit() |
String |
JIPipeParameterSlotAlgorithmSettings.getParameterAnnotationsPrefix() |
JIPipeParameterSlotAlgorithmSettings |
JIPipeParameterSlotAlgorithm.getParameterSlotAlgorithmSettings() |
boolean |
JIPipeMissingDataGeneratorIterationStepGenerationSettings.isAllowMerging() |
boolean |
JIPipeParameterSlotAlgorithmSettings.isAttachOnlyNonDefaultParameterAnnotations() |
boolean |
JIPipeParameterSlotAlgorithmSettings.isAttachParameterAnnotations() |
boolean |
JIPipeIteratingAlgorithmIterationStepGenerationSettings.isForceFlowGraphSolver() |
boolean |
JIPipeMergingAlgorithmIterationStepGenerationSettings.isForceFlowGraphSolver() |
boolean |
JIPipeMissingDataGeneratorIterationStepGenerationSettings.isForceFlowGraphSolver() |
boolean |
JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.isForceFlowGraphSolver() |
boolean |
JIPipeMergingAlgorithmIterationStepGenerationSettings.isForceNAIsAny() |
boolean |
JIPipeParameterSlotAlgorithmSettings.isHasParameterSlot() |
boolean |
JIPipeIteratingMissingDataGeneratorAlgorithm.isKeepOriginalAnnotations() |
boolean |
JIPipeMissingDataGeneratorAlgorithm.isKeepOriginalAnnotations() |
boolean |
JIPipeParameterSlotAlgorithmSettings.isParameterAnnotationsUseInternalNames() |
boolean |
JIPipeIteratingAlgorithmIterationStepGenerationSettings.isSkipIncompleteDataSets() |
boolean |
JIPipeMergingAlgorithmIterationStepGenerationSettings.isSkipIncompleteDataSets() |
void |
JIPipeMissingDataGeneratorIterationStepGenerationSettings.setAllowMerging(boolean allowMerging) |
void |
JIPipeIteratingAlgorithmIterationStepGenerationSettings.setAnnotationMatchingMethod(JIPipeTextAnnotationMatchingMethod annotationMatchingMethod) |
void |
JIPipeMergingAlgorithmIterationStepGenerationSettings.setAnnotationMatchingMethod(JIPipeTextAnnotationMatchingMethod annotationMatchingMethod) |
void |
JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.setAnnotationMatchingMethod(JIPipeTextAnnotationMatchingMethod annotationMatchingMethod) |
void |
JIPipeIteratingAlgorithmIterationStepGenerationSettings.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy) |
void |
JIPipeMergingAlgorithmIterationStepGenerationSettings.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy) |
void |
JIPipeMissingDataGeneratorIterationStepGenerationSettings.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy) |
void |
JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy) |
void |
JIPipeSingleIterationAlgorithmIterationStepGenerationSettings.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy) |
void |
JIPipeParameterSlotAlgorithmSettings.setAttachOnlyNonDefaultParameterAnnotations(boolean attachOnlyNonDefaultParameterAnnotations) |
void |
JIPipeParameterSlotAlgorithmSettings.setAttachParameterAnnotations(boolean attachParameterAnnotations) |
void |
JIPipeIteratingAlgorithmIterationStepGenerationSettings.setColumnMatching(JIPipeColumMatching columnMatching) |
void |
JIPipeMergingAlgorithmIterationStepGenerationSettings.setColumnMatching(JIPipeColumMatching columnMatching) |
void |
JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.setColumnMatching(JIPipeColumMatching columnMatching) |
void |
JIPipeIteratingAlgorithmIterationStepGenerationSettings.setCustomAnnotationMatching(JIPipeExpressionParameter customAnnotationMatching) |
void |
JIPipeMergingAlgorithmIterationStepGenerationSettings.setCustomAnnotationMatching(JIPipeExpressionParameter customAnnotationMatching) |
void |
JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.setCustomAnnotationMatching(JIPipeExpressionParameter customAnnotationMatching) |
void |
JIPipeIteratingAlgorithmIterationStepGenerationSettings.setCustomColumns(StringQueryExpression customColumns) |
void |
JIPipeMergingAlgorithmIterationStepGenerationSettings.setCustomColumns(StringQueryExpression customColumns) |
void |
JIPipeMissingDataGeneratorIterationStepGenerationSettings.setCustomColumns(StringQueryExpression customColumns) |
void |
JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.setCustomColumns(StringQueryExpression customColumns) |
void |
JIPipeIteratingAlgorithmIterationStepGenerationSettings.setDataAnnotationMergeStrategy(JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy) |
void |
JIPipeMergingAlgorithmIterationStepGenerationSettings.setDataAnnotationMergeStrategy(JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy) |
void |
JIPipeMissingDataGeneratorIterationStepGenerationSettings.setDataAnnotationMergeStrategy(JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy) |
void |
JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.setDataAnnotationMergeStrategy(JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy) |
void |
JIPipeSingleIterationAlgorithmIterationStepGenerationSettings.setDataAnnotationMergeStrategy(JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy) |
void |
JIPipeMissingDataGeneratorIterationStepGenerationSettings.setDataSetMatching(JIPipeColumMatching dataSetMatching) |
void |
JIPipeIteratingAlgorithmIterationStepGenerationSettings.setForceFlowGraphSolver(boolean forceFlowGraphSolver) |
void |
JIPipeMergingAlgorithmIterationStepGenerationSettings.setForceFlowGraphSolver(boolean forceFlowGraphSolver) |
void |
JIPipeMissingDataGeneratorIterationStepGenerationSettings.setForceFlowGraphSolver(boolean forceFlowGraphSolver) |
void |
JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.setForceFlowGraphSolver(boolean forceFlowGraphSolver) |
void |
JIPipeMergingAlgorithmIterationStepGenerationSettings.setForceNAIsAny(boolean forceNAIsAny) |
void |
JIPipeParameterSlotAlgorithmSettings.setHasParameterSlot(boolean hasParameterSlot) |
void |
JIPipeIteratingMissingDataGeneratorAlgorithm.setKeepOriginalAnnotations(boolean keepOriginalAnnotations) |
void |
JIPipeMissingDataGeneratorAlgorithm.setKeepOriginalAnnotations(boolean keepOriginalAnnotations) |
void |
JIPipeParameterlessSimpleIteratingAlgorithm.IterationStepGenerationSettings.setLimit(OptionalIntegerRange limit) |
void |
JIPipeIteratingAlgorithmIterationStepGenerationSettings.setLimit(OptionalIntegerRange limit) |
void |
JIPipeMergingAlgorithmIterationStepGenerationSettings.setLimit(OptionalIntegerRange limit) |
void |
JIPipeMissingDataGeneratorIterationStepGenerationSettings.setLimit(OptionalIntegerRange limit) |
void |
JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.setLimit(OptionalIntegerRange limit) |
void |
JIPipeSimpleIteratingAlgorithmIterationStepGenerationSettings.setLimit(OptionalIntegerRange limit) |
void |
JIPipeParameterSlotAlgorithmSettings.setParameterAnnotationsPrefix(String parameterAnnotationsPrefix) |
void |
JIPipeParameterSlotAlgorithmSettings.setParameterAnnotationsUseInternalNames(boolean parameterAnnotationsUseInternalNames) |
void |
JIPipeIteratingAlgorithmIterationStepGenerationSettings.setSkipIncompleteDataSets(boolean skipIncompleteDataSets) |
void |
JIPipeMergingAlgorithmIterationStepGenerationSettings.setSkipIncompleteDataSets(boolean skipIncompleteDataSets) |
Modifier and Type | Method and Description |
---|---|
int |
JIPipeAnnotationGraphNode.getGridHeight() |
int |
JIPipeAnnotationGraphNode.getGridWidth() |
int |
JIPipeAnnotationGraphNode.getzOrder() |
void |
JIPipeAnnotationGraphNode.setGridHeight(int gridHeight) |
void |
JIPipeAnnotationGraphNode.setGridWidth(int gridWidth) |
void |
JIPipeAnnotationGraphNode.setzOrder(int zOrder) |
Modifier and Type | Method and Description |
---|---|
int |
JIPipeGraphRunConfiguration.getNumThreads() |
Path |
JIPipeGraphRunConfiguration.getOutputPath() |
boolean |
JIPipeGraphRunConfiguration.isLoadFromCache() |
boolean |
JIPipeGraphRunConfiguration.isStoreToCache() |
void |
JIPipeGraphRunConfiguration.setLoadFromCache(boolean loadFromCache) |
void |
JIPipeGraphRunConfiguration.setNumThreads(int numThreads) |
void |
JIPipeGraphRunConfiguration.setOutputPath(Path outputPath)
Sets the output path
|
void |
JIPipeGraphRunConfiguration.setStoreToCache(boolean storeToCache) |
Modifier and Type | Method and Description |
---|---|
OptionalColorParameter |
JIPipeRuntimePartition.getColor() |
JIPipeRuntimePartition.ContinueOnFailureSettings |
JIPipeRuntimePartition.getContinueOnFailureSettings() |
HTMLText |
JIPipeRuntimePartition.getDescription() |
JIPipeGraphWrapperAlgorithm.IterationMode |
JIPipeRuntimePartition.getIterationMode() |
JIPipeIteratingAlgorithmIterationStepGenerationSettings |
JIPipeRuntimePartition.getLoopIterationIteratingSettings() |
JIPipeMergingAlgorithmIterationStepGenerationSettings |
JIPipeRuntimePartition.getLoopIterationMergingSettings() |
String |
JIPipeRuntimePartition.getName() |
JIPipeRuntimePartition.OutputSettings |
JIPipeRuntimePartition.getOutputSettings() |
boolean |
JIPipeRuntimePartition.OutputSettings.isAlwaysExportCompartmentOutputs() |
boolean |
JIPipeRuntimePartition.ContinueOnFailureSettings.isContinueOnFailure() |
boolean |
JIPipeRuntimePartition.isEnableParallelization() |
boolean |
JIPipeRuntimePartition.ContinueOnFailureSettings.isExportFailedLoopInputs() |
boolean |
JIPipeRuntimePartition.ContinueOnFailureSettings.isExportFailedPartitionInputs() |
boolean |
JIPipeRuntimePartition.OutputSettings.isExportHeavyData() |
boolean |
JIPipeRuntimePartition.OutputSettings.isExportLightweightData() |
boolean |
JIPipeRuntimePartition.OutputSettings.isExportLoopIntermediateResults() |
boolean |
JIPipeRuntimePartition.OutputSettings.isExportLoopTerminating() |
boolean |
JIPipeRuntimePartition.isForcePassThroughLoopIterationInCaching() |
void |
JIPipeRuntimePartition.OutputSettings.setAlwaysExportCompartmentOutputs(boolean alwaysExportCompartmentOutputs) |
void |
JIPipeRuntimePartition.setColor(OptionalColorParameter color) |
void |
JIPipeRuntimePartition.ContinueOnFailureSettings.setContinueOnFailure(boolean continueOnFailure) |
void |
JIPipeRuntimePartition.setDescription(HTMLText description) |
void |
JIPipeRuntimePartition.setEnableParallelization(boolean enableParallelization) |
void |
JIPipeRuntimePartition.ContinueOnFailureSettings.setExportFailedLoopInputs(boolean exportFailedLoopInputs) |
void |
JIPipeRuntimePartition.ContinueOnFailureSettings.setExportFailedPartitionInputs(boolean exportFailedPartitionInputs) |
void |
JIPipeRuntimePartition.OutputSettings.setExportHeavyData(boolean exportHeavyData) |
void |
JIPipeRuntimePartition.OutputSettings.setExportLightweightData(boolean exportLightweightData) |
void |
JIPipeRuntimePartition.OutputSettings.setExportLoopIntermediateResults(boolean exportLoopIntermediateResults) |
void |
JIPipeRuntimePartition.OutputSettings.setExportLoopTerminating(boolean exportLoopTerminating) |
void |
JIPipeRuntimePartition.setForcePassThroughLoopIterationInCaching(boolean forcePassThroughLoopIterationInCaching) |
void |
JIPipeRuntimePartition.setIterationMode(JIPipeGraphWrapperAlgorithm.IterationMode iterationMode) |
void |
JIPipeRuntimePartition.setName(String name) |
Modifier and Type | Method and Description |
---|---|
OptionalTextAnnotationNameParameter |
ConvertToAnnotationTable.getAddDataToString() |
OptionalStringParameter |
ExtractDataAnnotation.getAnnotateWithCurrentData() |
AnnotationQueryExpression |
RemoveAnnotationAlgorithm.getAnnotationExpression() |
AnnotationQueryExpression |
SimplifyAnnotationsAlgorithm.getAnnotationFilter() |
JIPipeDataAnnotationMergeMode |
RenameDataAnnotation.getAnnotationMergeStrategy() |
JIPipeTextAnnotationMergeMode |
GenerateRandomUniqueAnnotation.getAnnotationMergeStrategy() |
JIPipeTextAnnotationMergeMode |
GenerateUniqueAnnotation.getAnnotationMergeStrategy() |
JIPipeTextAnnotationMergeMode |
AnnotateWithData.getAnnotationMergeStrategy() |
JIPipeTextAnnotationMergeMode |
AnnotateWithSourceSlot.getAnnotationMergeStrategy() |
JIPipeTextAnnotationMergeMode |
DataAnnotationToStringAnnotation.getAnnotationMergeStrategy() |
JIPipeTextAnnotationMergeMode |
AnnotateByExpression.getAnnotationMergeStrategy() |
JIPipeTextAnnotationMergeMode |
RenameAnnotation.getAnnotationMergeStrategy() |
JIPipeTextAnnotationMergeMode |
AnnotateWithDataString.getAnnotationMergeStrategy() |
JIPipeTextAnnotationMergeMode |
ExtractAndReplaceAnnotation.getAnnotationMergeStrategy() |
String |
AnnotateWithData.getAnnotationName() |
StringQueryExpression |
SetSingleAnnotation.getAnnotationName() |
JIPipeExpressionParameter |
AnnotateByProjectPaths.Entry.getAnnotationName() |
StringQueryExpression |
RemoveArrayAnnotationsAlgorithm.getAnnotationNameFilter() |
StringQueryExpression |
RemoveNAAnnotationColumnsAlgorithm.getAnnotationNameFilter() |
StringQueryExpression |
ExtractDataAnnotation.getAnnotationNameQuery() |
SimplifyAnnotationsAlgorithm.AnnotationRemovalMode |
SimplifyAnnotationsAlgorithm.getAnnotationRemovalMode() |
NamedTextAnnotationGeneratorExpression.List |
AnnotateByExpression.getAnnotations() |
StringQueryExpression |
SetSingleAnnotation.getAnnotationValue() |
DataExportExpressionParameter |
AnnotateByProjectPaths.Entry.getAnnotationValue() |
String |
GenerateUniqueAnnotation.getBaseName() |
PythonScript |
SplitByAnnotationScript.getCode() |
PythonScript |
ModifyAnnotationScript.getCode() |
JIPipeExpressionParameter |
SimplifyAnnotationsAlgorithm.getCombinationFunction() |
JIPipeDataAnnotationMergeMode |
AnnotateWithData.getDataAnnotationMergeMode() |
AnnotationFilterExpression |
FilterByAnnotationIfElse.getFilter() |
AnnotationFilterExpression |
FilterByAnnotation.getFilter() |
StringPatternExtractionFunction.List |
ExtractAndReplaceAnnotation.getFunctions() |
String |
GenerateRandomUniqueAnnotation.getGeneratedAnnotation() |
String |
GenerateUniqueAnnotation.getGeneratedAnnotation() |
String |
AnnotateWithSourceSlot.getGeneratedAnnotation() |
String |
AnnotateWithDataString.getGeneratedAnnotation() |
String |
SimplifyAnnotationsAlgorithm.getGeneratedAnnotationName() |
ParameterCollectionList |
AnnotateByProjectPaths.getGeneratedAnnotations() |
JIPipeTextAnnotationMergeMode |
AnnotateByProjectPaths.getMergeMode() |
JIPipeTextAnnotationMergeMode |
OverwriteAnnotations.getMergeMode() |
StringQueryExpression |
DataAnnotationToStringAnnotation.getNameFilter() |
StringQueryExpression |
RemoveDataAnnotations.getNameFilter() |
JIPipeExpressionParameter |
OverwriteAnnotations.getRemoveExistingAnnotationsFilter() |
StringQueryExpression |
SimplifyAnnotationsAlgorithm.getRenameFunction() |
StringQueryExpressionAndStringPairParameter.List |
RenameDataAnnotation.getRenamingItems() |
StringQueryExpressionAndStringPairParameter.List |
RenameAnnotation.getRenamingItems() |
JIPipeDynamicParameterCollection |
SplitByAnnotationScript.getScriptParameters() |
JIPipeDynamicParameterCollection |
ModifyAnnotationScript.getScriptParameters() |
JIPipeExpressionParameter |
OverwriteAnnotations.getSourceAnnotationFilter() |
JIPipeIteratingAlgorithmIterationStepGenerationSettings |
AnnotateWithAnnotationTable.getTableMergeSettings() |
OutputSlotMapParameterCollection |
SplitByAnnotation.getTargetSlots() |
boolean |
AnnotateWithDataString.isDetailedDataString() |
boolean |
AnnotateWithAnnotationTable.isDiscardExistingAnnotations() |
boolean |
ExtractDataAnnotation.isIgnoreMissingAnnotations() |
boolean |
ExtractDataAnnotation.isKeepCurrentAnnotation() |
boolean |
DataAnnotationToStringAnnotation.isKeepDataAnnotations() |
boolean |
ExtractDataAnnotation.isKeepOtherDataAnnotations() |
boolean |
AnnotateWithData.isMergeInputAnnotations() |
boolean |
AnnotateWithData.isMergeLabelAnnotations() |
boolean |
RemoveArrayAnnotationsAlgorithm.isRemoveColumn() |
boolean |
ConvertToAnnotationTable.isRemoveOutputAnnotations() |
void |
ConvertToAnnotationTable.setAddDataToString(OptionalTextAnnotationNameParameter addDataToString) |
void |
ExtractDataAnnotation.setAnnotateWithCurrentData(OptionalStringParameter annotateWithCurrentData) |
void |
RemoveAnnotationAlgorithm.setAnnotationExpression(AnnotationQueryExpression annotationExpression) |
void |
SimplifyAnnotationsAlgorithm.setAnnotationFilter(AnnotationQueryExpression annotationFilter) |
void |
RenameDataAnnotation.setAnnotationMergeStrategy(JIPipeDataAnnotationMergeMode annotationMergeStrategy) |
void |
GenerateRandomUniqueAnnotation.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy) |
void |
GenerateUniqueAnnotation.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy) |
void |
AnnotateWithData.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy) |
void |
AnnotateWithSourceSlot.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy) |
void |
DataAnnotationToStringAnnotation.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy) |
void |
AnnotateByExpression.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy) |
void |
RenameAnnotation.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy) |
void |
AnnotateWithDataString.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy) |
void |
ExtractAndReplaceAnnotation.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy) |
void |
AnnotateByProjectPaths.Entry.setAnnotationName(JIPipeExpressionParameter annotationName) |
void |
AnnotateWithData.setAnnotationName(String annotationName) |
void |
SetSingleAnnotation.setAnnotationName(StringQueryExpression annotationName) |
void |
RemoveArrayAnnotationsAlgorithm.setAnnotationNameFilter(StringQueryExpression annotationNameFilter) |
void |
RemoveNAAnnotationColumnsAlgorithm.setAnnotationNameFilter(StringQueryExpression annotationNameFilter) |
void |
ExtractDataAnnotation.setAnnotationNameQuery(StringQueryExpression annotationNameQuery) |
void |
SimplifyAnnotationsAlgorithm.setAnnotationRemovalMode(SimplifyAnnotationsAlgorithm.AnnotationRemovalMode annotationRemovalMode) |
void |
AnnotateByExpression.setAnnotations(NamedTextAnnotationGeneratorExpression.List annotations) |
void |
AnnotateByProjectPaths.Entry.setAnnotationValue(DataExportExpressionParameter annotationValue) |
void |
SetSingleAnnotation.setAnnotationValue(StringQueryExpression annotationValue) |
void |
GenerateUniqueAnnotation.setBaseName(String baseName) |
void |
SplitByAnnotationScript.setCode(PythonScript code) |
void |
ModifyAnnotationScript.setCode(PythonScript code) |
void |
SimplifyAnnotationsAlgorithm.setCombinationFunction(JIPipeExpressionParameter combinationFunction) |
void |
AnnotateWithData.setDataAnnotationMergeMode(JIPipeDataAnnotationMergeMode dataAnnotationMergeMode) |
void |
AnnotateWithDataString.setDetailedDataString(boolean detailedDataString) |
void |
AnnotateWithAnnotationTable.setDiscardExistingAnnotations(boolean discardExistingAnnotations) |
void |
FilterByAnnotationIfElse.setFilter(AnnotationFilterExpression filter) |
void |
FilterByAnnotation.setFilter(AnnotationFilterExpression filter) |
void |
ExtractAndReplaceAnnotation.setFunctions(StringPatternExtractionFunction.List functions) |
void |
GenerateRandomUniqueAnnotation.setGeneratedAnnotation(String generatedAnnotation)
Sets generated annotation type
|
void |
GenerateUniqueAnnotation.setGeneratedAnnotation(String generatedAnnotation)
Sets generated annotation type
|
void |
AnnotateWithSourceSlot.setGeneratedAnnotation(String generatedAnnotation)
Sets generated annotation type
|
void |
AnnotateWithDataString.setGeneratedAnnotation(String generatedAnnotation)
Sets generated annotation type
|
void |
SimplifyAnnotationsAlgorithm.setGeneratedAnnotationName(String generatedAnnotationName) |
void |
AnnotateByProjectPaths.setGeneratedAnnotations(ParameterCollectionList generatedAnnotations) |
void |
ExtractDataAnnotation.setIgnoreMissingAnnotations(boolean ignoreMissingAnnotations) |
void |
ExtractDataAnnotation.setKeepCurrentAnnotation(boolean keepCurrentAnnotation) |
void |
DataAnnotationToStringAnnotation.setKeepDataAnnotations(boolean keepDataAnnotations) |
void |
ExtractDataAnnotation.setKeepOtherDataAnnotations(boolean keepOtherDataAnnotations) |
void |
AnnotateWithData.setMergeInputAnnotations(boolean mergeInputAnnotations) |
void |
AnnotateWithData.setMergeLabelAnnotations(boolean mergeLabelAnnotations) |
void |
AnnotateByProjectPaths.setMergeMode(JIPipeTextAnnotationMergeMode mergeMode) |
void |
OverwriteAnnotations.setMergeMode(JIPipeTextAnnotationMergeMode mergeMode) |
void |
DataAnnotationToStringAnnotation.setNameFilter(StringQueryExpression nameFilter) |
void |
RemoveDataAnnotations.setNameFilter(StringQueryExpression nameFilter) |
void |
RemoveArrayAnnotationsAlgorithm.setRemoveColumn(boolean removeColumn) |
void |
OverwriteAnnotations.setRemoveExistingAnnotationsFilter(JIPipeExpressionParameter removeExistingAnnotationsFilter) |
void |
ConvertToAnnotationTable.setRemoveOutputAnnotations(boolean removeOutputAnnotations) |
void |
SimplifyAnnotationsAlgorithm.setRenameFunction(StringQueryExpression renameFunction) |
void |
RenameDataAnnotation.setRenamingItems(StringQueryExpressionAndStringPairParameter.List renamingItems) |
void |
RenameAnnotation.setRenamingItems(StringQueryExpressionAndStringPairParameter.List renamingItems) |
void |
OverwriteAnnotations.setSourceAnnotationFilter(JIPipeExpressionParameter sourceAnnotationFilter) |
Modifier and Type | Method and Description |
---|---|
StringList |
CellposeSettings.getEasyInstallerRepositories() |
OptionalPythonEnvironment |
CellposeSettings.getOverridePythonEnvironment() |
void |
CellposeSettings.setEasyInstallerRepositories(StringList easyInstallerRepositories) |
void |
CellposeSettings.setOverridePythonEnvironment(OptionalPythonEnvironment overridePythonEnvironment) |
Modifier and Type | Method and Description |
---|---|
CellposeChannelSettings |
CellposeTrainingAlgorithm.getChannelSettings() |
CellposeChannelSettings |
CellposeAlgorithm.getChannelSettings() |
OptionalDoubleParameter |
CellposeTrainingAlgorithm.getDiameter() |
OptionalDoubleParameter |
CellposeAlgorithm.getDiameter() |
OptionalTextAnnotationNameParameter |
CellposeAlgorithm.getDiameterAnnotation() |
CellposeSegmentationTweaksSettings |
CellposeAlgorithm.getEnhancementParameters() |
CellposeGPUSettings |
CellposeTrainingAlgorithm.getGpuSettings() |
CellposeGPUSettings |
CellposeAlgorithm.getGpuSettings() |
DataAnnotationQueryExpression |
CellposeTrainingAlgorithm.getLabelDataAnnotation() |
CellposeModel |
CellposeAlgorithm.getModel() |
int |
CellposeTrainingAlgorithm.getNumEpochs() |
OptionalPythonEnvironment |
CellposeTrainingAlgorithm.getOverrideEnvironment() |
OptionalPythonEnvironment |
CellposeAlgorithm.getOverrideEnvironment() |
CellposePretrainedModel |
CellposeTrainingAlgorithm.getPretrainedModel() |
CellposeSegmentationOutputSettings |
CellposeAlgorithm.getSegmentationOutputSettings() |
CellposeSegmentationThresholdSettings |
CellposeAlgorithm.getThresholdParameters() |
CellposeTrainingTweaksSettings |
CellposeTrainingAlgorithm.getTweaksSettings() |
boolean |
CellposeTrainingAlgorithm.isCleanUpAfterwards() |
boolean |
CellposeAlgorithm.isCleanUpAfterwards() |
boolean |
CellposeTrainingAlgorithm.isEnable3DSegmentation() |
boolean |
CellposeAlgorithm.isEnable3DSegmentation() |
boolean |
CellposeTrainingAlgorithm.isTrainSizeModel() |
void |
CellposeTrainingAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards) |
void |
CellposeAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards) |
void |
CellposeTrainingAlgorithm.setDiameter(OptionalDoubleParameter diameter) |
void |
CellposeAlgorithm.setDiameter(OptionalDoubleParameter diameter) |
void |
CellposeAlgorithm.setDiameterAnnotation(OptionalTextAnnotationNameParameter diameterAnnotation) |
void |
CellposeTrainingAlgorithm.setEnable3DSegmentation(boolean enable3DSegmentation) |
void |
CellposeAlgorithm.setEnable3DSegmentation(boolean enable3DSegmentation) |
void |
CellposeTrainingAlgorithm.setLabelDataAnnotation(DataAnnotationQueryExpression labelDataAnnotation) |
void |
CellposeAlgorithm.setModel(CellposeModel model) |
void |
CellposeTrainingAlgorithm.setNumEpochs(int numEpochs) |
void |
CellposeTrainingAlgorithm.setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment) |
void |
CellposeAlgorithm.setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment) |
void |
CellposeTrainingAlgorithm.setPretrainedModel(CellposePretrainedModel pretrainedModel) |
void |
CellposeTrainingAlgorithm.setTrainSizeModel(boolean trainSizeModel) |
Modifier and Type | Method and Description |
---|---|
int |
CellposeTrainingAlgorithm_Old.getBatchSize()
Deprecated.
|
int |
CellposeTrainingAlgorithm_Old.getDiameter()
Deprecated.
|
OptionalDoubleParameter |
CellposeAlgorithm_Old.getDiameter()
Deprecated.
|
OptionalTextAnnotationNameParameter |
CellposeAlgorithm_Old.getDiameterAnnotation()
Deprecated.
|
CellposeSegmentationEnhancementSettings_Old |
CellposeAlgorithm_Old.getEnhancementParameters()
Deprecated.
|
CellposeGPUSettings |
CellposeTrainingAlgorithm_Old.getGpuSettings()
Deprecated.
|
DataAnnotationQueryExpression |
CellposeTrainingAlgorithm_Old.getLabelDataAnnotation()
Deprecated.
|
double |
CellposeTrainingAlgorithm_Old.getLearningRate()
Deprecated.
|
int |
CellposeTrainingAlgorithm_Old.getMinTrainMasks()
Deprecated.
|
CellposeSegmentationModelSettings_Old |
CellposeAlgorithm_Old.getModelParameters()
Deprecated.
|
OptionalIntegerParameter |
CellposeTrainingAlgorithm_Old.getNuclearChannel()
Deprecated.
|
int |
CellposeTrainingAlgorithm_Old.getNumEpochs()
Deprecated.
|
CellposeSegmentationOutputSettings_Old |
CellposeAlgorithm_Old.getOutputParameters()
Deprecated.
|
OptionalPythonEnvironment |
CellposeTrainingAlgorithm_Old.getOverrideEnvironment()
Deprecated.
|
OptionalPythonEnvironment |
CellposeAlgorithm_Old.getOverrideEnvironment()
Deprecated.
|
CellposeSegmentationPerformanceSettings_Old |
CellposeAlgorithm_Old.getPerformanceParameters()
Deprecated.
|
CellposePretrainedModel |
CellposeTrainingAlgorithm_Old.getPretrainedModel()
Deprecated.
|
OptionalIntegerParameter |
CellposeTrainingAlgorithm_Old.getSegmentedChannel()
Deprecated.
|
CellposeSegmentationThresholdSettings_Old |
CellposeAlgorithm_Old.getThresholdParameters()
Deprecated.
|
double |
CellposeTrainingAlgorithm_Old.getWeightDecay()
Deprecated.
|
boolean |
CellposeTrainingAlgorithm_Old.isCleanUpAfterwards()
Deprecated.
|
boolean |
CellposeAlgorithm_Old.isCleanUpAfterwards()
Deprecated.
|
boolean |
CellposeTrainingAlgorithm_Old.isConcatenateDownsampledLayers()
Deprecated.
|
boolean |
CellposeTrainingAlgorithm_Old.isEnable3DSegmentation()
Deprecated.
|
boolean |
CellposeAlgorithm_Old.isEnable3DSegmentation()
Deprecated.
|
boolean |
CellposeTrainingAlgorithm_Old.isGenerateConnectedComponents()
Deprecated.
|
boolean |
CellposeTrainingAlgorithm_Old.isTrainSizeModel()
Deprecated.
|
boolean |
CellposeTrainingAlgorithm_Old.isUseResidualConnections()
Deprecated.
|
boolean |
CellposeTrainingAlgorithm_Old.isUseStyleVector()
Deprecated.
|
void |
CellposeTrainingAlgorithm_Old.setBatchSize(int batchSize)
Deprecated.
|
void |
CellposeTrainingAlgorithm_Old.setCleanUpAfterwards(boolean cleanUpAfterwards)
Deprecated.
|
void |
CellposeAlgorithm_Old.setCleanUpAfterwards(boolean cleanUpAfterwards)
Deprecated.
|
void |
CellposeTrainingAlgorithm_Old.setConcatenateDownsampledLayers(boolean concatenateDownsampledLayers)
Deprecated.
|
void |
CellposeTrainingAlgorithm_Old.setDiameter(int diameter)
Deprecated.
|
void |
CellposeAlgorithm_Old.setDiameter(OptionalDoubleParameter diameter)
Deprecated.
|
void |
CellposeAlgorithm_Old.setDiameterAnnotation(OptionalTextAnnotationNameParameter diameterAnnotation)
Deprecated.
|
void |
CellposeTrainingAlgorithm_Old.setEnable3DSegmentation(boolean enable3DSegmentation)
Deprecated.
|
void |
CellposeAlgorithm_Old.setEnable3DSegmentation(boolean enable3DSegmentation)
Deprecated.
|
void |
CellposeTrainingAlgorithm_Old.setGenerateConnectedComponents(boolean generateConnectedComponents)
Deprecated.
|
void |
CellposeTrainingAlgorithm_Old.setLabelDataAnnotation(DataAnnotationQueryExpression labelDataAnnotation)
Deprecated.
|
void |
CellposeTrainingAlgorithm_Old.setLearningRate(double learningRate)
Deprecated.
|
void |
CellposeTrainingAlgorithm_Old.setMinTrainMasks(int minTrainMasks)
Deprecated.
|
void |
CellposeTrainingAlgorithm_Old.setNuclearChannel(OptionalIntegerParameter nuclearChannel)
Deprecated.
|
void |
CellposeTrainingAlgorithm_Old.setNumEpochs(int numEpochs)
Deprecated.
|
void |
CellposeTrainingAlgorithm_Old.setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment)
Deprecated.
|
void |
CellposeAlgorithm_Old.setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment)
Deprecated.
|
void |
CellposeTrainingAlgorithm_Old.setPretrainedModel(CellposePretrainedModel pretrainedModel)
Deprecated.
|
void |
CellposeTrainingAlgorithm_Old.setSegmentedChannel(OptionalIntegerParameter segmentedChannel)
Deprecated.
|
void |
CellposeTrainingAlgorithm_Old.setTrainSizeModel(boolean trainSizeModel)
Deprecated.
|
void |
CellposeTrainingAlgorithm_Old.setUseResidualConnections(boolean useResidualConnections)
Deprecated.
|
void |
CellposeTrainingAlgorithm_Old.setUseStyleVector(boolean useStyleVector)
Deprecated.
|
void |
CellposeTrainingAlgorithm_Old.setWeightDecay(double weightDecay)
Deprecated.
|
Modifier and Type | Method and Description |
---|---|
String |
MinicondaCellposeGPUEnvInstaller.Configuration.getCudaToolkitVersion() |
String |
PortableCellposeGPUEnvInstaller.Configuration.getPyTorchPipPackage() |
void |
MinicondaCellposeGPUEnvInstaller.Configuration.setCudaToolkitVersion(String cudaToolkitVersion) |
void |
PortableCellposeGPUEnvInstaller.Configuration.setPyTorchPipPackage(String pyTorchPipPackage) |
Modifier and Type | Method and Description |
---|---|
OptionalDoubleParameter |
CellposeSegmentationTweaksSettings.getAnisotropy() |
int |
CellposeTrainingTweaksSettings.getBatchSize() |
double |
CellposeSegmentationThresholdSettings.getCellProbabilityThreshold() |
double |
CellposeSegmentationThresholdSettings.getFlowThreshold() |
OptionalIntegerParameter |
CellposeGPUSettings.getGpuDevice() |
double |
CellposeTrainingTweaksSettings.getLearningRate() |
int |
CellposeTrainingTweaksSettings.getMinTrainMasks() |
OptionalIntegerParameter |
CellposeChannelSettings.getNuclearChannel() |
OptionalIntegerParameter |
CellposeChannelSettings.getSegmentedChannel() |
OptionalDoubleParameter |
CellposeSegmentationThresholdSettings.getStitchThreshold() |
double |
CellposeTrainingTweaksSettings.getWeightDecay() |
boolean |
CellposeChannelSettings.isAllChannels() |
boolean |
CellposeTrainingTweaksSettings.isConcatenateDownsampledLayers() |
boolean |
CellposeSegmentationTweaksSettings.isDisableResample() |
boolean |
CellposeGPUSettings.isEnableGPU() |
boolean |
CellposeSegmentationThresholdSettings.isExcludeOnEdges() |
boolean |
CellposeTrainingTweaksSettings.isGenerateConnectedComponents() |
boolean |
CellposeSegmentationTweaksSettings.isInterpolate() |
boolean |
CellposeChannelSettings.isInvert() |
boolean |
CellposeSegmentationTweaksSettings.isNetAverage() |
boolean |
CellposeSegmentationTweaksSettings.isNormalize() |
boolean |
CellposeSegmentationOutputSettings.isOutputFlowsD() |
boolean |
CellposeSegmentationOutputSettings.isOutputFlowsXY() |
boolean |
CellposeSegmentationOutputSettings.isOutputFlowsZ() |
boolean |
CellposeSegmentationOutputSettings.isOutputLabels() |
boolean |
CellposeSegmentationOutputSettings.isOutputProbabilities() |
boolean |
CellposeSegmentationOutputSettings.isOutputROI() |
boolean |
CellposeTrainingTweaksSettings.isUseResidualConnections() |
boolean |
CellposeTrainingTweaksSettings.isUseStyleVector() |
void |
CellposeChannelSettings.setAllChannels(boolean allChannels) |
void |
CellposeSegmentationTweaksSettings.setAnisotropy(OptionalDoubleParameter anisotropy) |
void |
CellposeTrainingTweaksSettings.setBatchSize(int batchSize) |
void |
CellposeSegmentationThresholdSettings.setCellProbabilityThreshold(double cellProbabilityThreshold) |
void |
CellposeTrainingTweaksSettings.setConcatenateDownsampledLayers(boolean concatenateDownsampledLayers) |
void |
CellposeSegmentationTweaksSettings.setDisableResample(boolean disableResample) |
void |
CellposeGPUSettings.setEnableGPU(boolean enableGPU) |
void |
CellposeSegmentationThresholdSettings.setExcludeOnEdges(boolean excludeOnEdges) |
void |
CellposeSegmentationThresholdSettings.setFlowThreshold(double flowThreshold) |
void |
CellposeTrainingTweaksSettings.setGenerateConnectedComponents(boolean generateConnectedComponents) |
void |
CellposeGPUSettings.setGpuDevice(OptionalIntegerParameter gpuDevice) |
void |
CellposeSegmentationTweaksSettings.setInterpolate(boolean interpolate) |
void |
CellposeChannelSettings.setInvert(boolean invert) |
void |
CellposeTrainingTweaksSettings.setLearningRate(double learningRate) |
void |
CellposeTrainingTweaksSettings.setMinTrainMasks(int minTrainMasks) |
void |
CellposeSegmentationTweaksSettings.setNetAverage(boolean netAverage) |
void |
CellposeSegmentationTweaksSettings.setNormalize(boolean normalize) |
void |
CellposeChannelSettings.setNuclearChannel(OptionalIntegerParameter nuclearChannel) |
void |
CellposeSegmentationOutputSettings.setOutputFlowsD(boolean outputFlowsD) |
void |
CellposeSegmentationOutputSettings.setOutputFlowsXY(boolean outputFlowsXY) |
void |
CellposeSegmentationOutputSettings.setOutputFlowsZ(boolean outputFlowsZ) |
void |
CellposeSegmentationOutputSettings.setOutputLabels(boolean outputLabels) |
void |
CellposeSegmentationOutputSettings.setOutputProbabilities(boolean outputProbabilities) |
void |
CellposeSegmentationOutputSettings.setOutputROI(boolean outputROI) |
void |
CellposeChannelSettings.setSegmentedChannel(OptionalIntegerParameter segmentedChannel) |
void |
CellposeSegmentationThresholdSettings.setStitchThreshold(OptionalDoubleParameter stitchThreshold) |
void |
CellposeTrainingTweaksSettings.setUseResidualConnections(boolean useResidualConnections) |
void |
CellposeTrainingTweaksSettings.setUseStyleVector(boolean useStyleVector) |
void |
CellposeTrainingTweaksSettings.setWeightDecay(double weightDecay) |
Modifier and Type | Method and Description |
---|---|
OptionalDoubleParameter |
CellposeSegmentationEnhancementSettings_Old.getAnisotropy()
Deprecated.
|
int |
CellposeSegmentationPerformanceSettings_Old.getBatchSize()
Deprecated.
|
double |
CellposeSegmentationThresholdSettings_Old.getCellProbabilityThreshold()
Deprecated.
|
double |
CellposeSegmentationThresholdSettings_Old.getFlowThreshold()
Deprecated.
|
double |
CellposeSegmentationModelSettings_Old.getMeanDiameter()
Deprecated.
|
int |
CellposeSegmentationThresholdSettings_Old.getMinSize()
Deprecated.
|
CellposeModel |
CellposeSegmentationModelSettings_Old.getModel()
Deprecated.
|
double |
CellposeSegmentationThresholdSettings_Old.getStitchThreshold()
Deprecated.
|
double |
CellposeSegmentationPerformanceSettings_Old.getTileOverlap()
Deprecated.
|
boolean |
CellposeSegmentationEnhancementSettings_Old.isAugment()
Deprecated.
|
boolean |
CellposeSegmentationModelSettings_Old.isEnableGPU()
Deprecated.
|
boolean |
CellposeSegmentationEnhancementSettings_Old.isInterpolate()
Deprecated.
|
boolean |
CellposeSegmentationEnhancementSettings_Old.isNetAverage()
Deprecated.
|
boolean |
CellposeSegmentationEnhancementSettings_Old.isNormalize()
Deprecated.
|
boolean |
CellposeSegmentationOutputSettings_Old.isOutputFlows()
Deprecated.
|
boolean |
CellposeSegmentationOutputSettings_Old.isOutputLabels()
Deprecated.
|
boolean |
CellposeSegmentationOutputSettings_Old.isOutputProbabilities()
Deprecated.
|
boolean |
CellposeSegmentationOutputSettings_Old.isOutputROI()
Deprecated.
|
boolean |
CellposeSegmentationOutputSettings_Old.isOutputStyles()
Deprecated.
|
boolean |
CellposeSegmentationPerformanceSettings_Old.isResample()
Deprecated.
|
boolean |
CellposeSegmentationPerformanceSettings_Old.isTile()
Deprecated.
|
void |
CellposeSegmentationEnhancementSettings_Old.setAnisotropy(OptionalDoubleParameter anisotropy)
Deprecated.
|
void |
CellposeSegmentationEnhancementSettings_Old.setAugment(boolean augment)
Deprecated.
|
void |
CellposeSegmentationPerformanceSettings_Old.setBatchSize(int batchSize)
Deprecated.
|
void |
CellposeSegmentationThresholdSettings_Old.setCellProbabilityThreshold(double cellProbabilityThreshold)
Deprecated.
|
void |
CellposeSegmentationModelSettings_Old.setEnableGPU(boolean enableGPU)
Deprecated.
|
void |
CellposeSegmentationThresholdSettings_Old.setFlowThreshold(double flowThreshold)
Deprecated.
|
void |
CellposeSegmentationEnhancementSettings_Old.setInterpolate(boolean interpolate)
Deprecated.
|
void |
CellposeSegmentationModelSettings_Old.setMeanDiameter(double meanDiameter)
Deprecated.
|
void |
CellposeSegmentationThresholdSettings_Old.setMinSize(int minSize)
Deprecated.
|
void |
CellposeSegmentationModelSettings_Old.setModel(CellposeModel model)
Deprecated.
|
void |
CellposeSegmentationEnhancementSettings_Old.setNetAverage(boolean netAverage)
Deprecated.
|
void |
CellposeSegmentationEnhancementSettings_Old.setNormalize(boolean normalize)
Deprecated.
|
void |
CellposeSegmentationOutputSettings_Old.setOutputFlows(boolean outputFlows)
Deprecated.
|
void |
CellposeSegmentationOutputSettings_Old.setOutputLabels(boolean outputLabels)
Deprecated.
|
void |
CellposeSegmentationOutputSettings_Old.setOutputProbabilities(boolean outputProbabilities)
Deprecated.
|
void |
CellposeSegmentationOutputSettings_Old.setOutputROI(boolean outputROI)
Deprecated.
|
void |
CellposeSegmentationOutputSettings_Old.setOutputStyles(boolean outputStyles)
Deprecated.
|
void |
CellposeSegmentationPerformanceSettings_Old.setResample(boolean resample)
Deprecated.
|
void |
CellposeSegmentationThresholdSettings_Old.setStitchThreshold(double stitchThreshold)
Deprecated.
|
void |
CellposeSegmentationPerformanceSettings_Old.setTile(boolean tile)
Deprecated.
|
void |
CellposeSegmentationPerformanceSettings_Old.setTileOverlap(double tileOverlap)
Deprecated.
|
Modifier and Type | Method and Description |
---|---|
ImageJCalibrationMode |
CLIJSettings.ContrastEnhancerSettings.getCalibrationMode() |
JIPipeDynamicParameterCollection |
CLIJCommandNode.getClijParameters() |
CLIJSettings.ContrastEnhancerSettings |
CLIJSettings.getContrastEnhancerSettings() |
double |
CLIJSettings.ContrastEnhancerSettings.getCustomMax() |
double |
CLIJSettings.ContrastEnhancerSettings.getCustomMin() |
int |
CLIJSettings.getDevice() |
boolean |
CLIJSettings.ContrastEnhancerSettings.isApplyToAllPlanes() |
boolean |
CLIJSettings.isAutoCalibrateAfterPulling() |
boolean |
CLIJCommandNode.isAvoidGPUMemory() |
boolean |
CLIJSettings.ContrastEnhancerSettings.isDuplicateImage() |
void |
CLIJSettings.ContrastEnhancerSettings.setApplyToAllPlanes(boolean applyToAllPlanes) |
void |
CLIJSettings.setAutoCalibrateAfterPulling(boolean autoCalibrateAfterPulling) |
void |
CLIJCommandNode.setAvoidGPUMemory(boolean avoidGPUMemory) |
void |
CLIJSettings.ContrastEnhancerSettings.setCalibrationMode(ImageJCalibrationMode calibrationMode) |
void |
CLIJSettings.ContrastEnhancerSettings.setCustomMax(double customMax) |
void |
CLIJSettings.ContrastEnhancerSettings.setCustomMin(double customMin) |
void |
CLIJSettings.setDevice(int device) |
void |
CLIJSettings.ContrastEnhancerSettings.setDuplicateImage(boolean duplicateImage) |
Modifier and Type | Method and Description |
---|---|
String |
Clij2ExecuteKernelIterating.getKernelFunction() |
String |
Clij2ExecuteKernelSimpleIterating.getKernelFunction() |
OpenCLKernelScript |
Clij2ExecuteKernelIterating.getKernelScript() |
OpenCLKernelScript |
Clij2ExecuteKernelSimpleIterating.getKernelScript() |
PythonScript |
Clij2ExecuteKernelIterating.getPreprocessingScript() |
PythonScript |
Clij2ExecuteKernelSimpleIterating.getPreprocessingScript() |
JIPipeDynamicParameterCollection |
Clij2ExecuteKernelIterating.getScriptParameters() |
JIPipeDynamicParameterCollection |
Clij2ExecuteKernelSimpleIterating.getScriptParameters() |
boolean |
Clij2PullAlgorithm.isDeallocate() |
void |
Clij2PullAlgorithm.setDeallocate(boolean deallocate) |
void |
Clij2ExecuteKernelIterating.setKernelFunction(String kernelFunction) |
void |
Clij2ExecuteKernelSimpleIterating.setKernelFunction(String kernelFunction) |
void |
Clij2ExecuteKernelIterating.setKernelScript(OpenCLKernelScript kernelScript) |
void |
Clij2ExecuteKernelSimpleIterating.setKernelScript(OpenCLKernelScript kernelScript) |
void |
Clij2ExecuteKernelIterating.setPreprocessingScript(PythonScript preprocessingScript) |
void |
Clij2ExecuteKernelSimpleIterating.setPreprocessingScript(PythonScript preprocessingScript) |
Modifier and Type | Method and Description |
---|---|
Color |
JIPipeCommentNode.getBackgroundColor() |
IconRef |
JIPipeCommentNode.getIcon() |
Color |
JIPipeCommentNode.getTextColor() |
void |
JIPipeCommentNode.setBackgroundColor(Color backgroundColor) |
void |
JIPipeCommentNode.setIcon(IconRef icon) |
void |
JIPipeCommentNode.setTextColor(Color textColor) |
Modifier and Type | Method and Description |
---|---|
boolean |
FilesystemExtensionSettings.isAutoLabelOutputWithFileName() |
boolean |
FilesystemExtensionSettings.isRelativizePaths() |
void |
FilesystemExtensionSettings.setAutoLabelOutputWithFileName(boolean autoLabelOutputWithFileName) |
void |
FilesystemExtensionSettings.setRelativizePaths(boolean relativizePaths) |
Modifier and Type | Method and Description |
---|---|
AnnotationQueryExpression |
AnnotationToPath.getAnnotationExpression() |
JIPipeTextAnnotationMergeMode |
SimplePathAnnotationGenerator.getAnnotationMergeStrategy() |
StringAndStringPairParameter.List |
ImportDataRowFolder.getAnnotations() |
TableColumnSourceExpressionParameter |
AnnotationTableToPaths.getColumn() |
JIPipeDataAnnotationMergeMode |
ImportDataTableDirectory.getDataAnnotationMergeMode() |
JIPipeDataAnnotationMergeMode |
ImportDataTableArchive.getDataAnnotationMergeMode() |
JIPipeDataInfoRef |
ImportDataRowFolder.getDataType() |
JIPipeDataByMetadataExporter |
ExportData.getExporter() |
JIPipeDataByMetadataExporter |
ExportDataByParameter.getExporter() |
JIPipeExpressionParameter |
ModifyPathWithExpression.getExpression() |
PathQueryExpression |
ModifyPath.getExpression() |
OptionalTextAnnotationNameParameter |
AnnotateWithPathProperties.getFileNameAnnotation() |
DataExportExpressionParameter |
ExportDataByParameter2.getFilePath() |
DataExportExpressionParameter |
ConvertToExportedPath.getFilePath() |
PathQueryExpression |
FilterPaths.getFilters() |
PathQueryExpression |
ListFiles.getFilters() |
PathQueryExpression |
ListSubfolders.getFilters() |
String |
SimpleFolderAnnotationGenerator.getGeneratedAnnotation() |
String |
SimplePathAnnotationGenerator.getGeneratedAnnotation() |
String |
SimpleFileAnnotationGenerator.getGeneratedAnnotation() |
String |
ImportDataTableArchive.getInternalPath() |
OptionalTextAnnotationNameParameter |
AnnotateWithPathProperties.getLastModifiedTime() |
int |
ExtractParent.getOrder() |
Path |
ExportDataByParameter.getOutputDirectory() |
Path |
ExportDataTableByParameter.getOutputDirectory() |
Path |
RelativizeByParameter.getParentPath() |
OptionalTextAnnotationNameParameter |
AnnotateWithPathProperties.getParentPathAnnotation() |
String |
RenameByString.getPathName() |
OptionalTextAnnotationNameParameter |
AnnotateWithPathProperties.getSizeAnnotation() |
String |
ListFiles.getSubFolder() |
String |
ListSubfolders.getSubFolder() |
Path |
ConcatenateByParameter.getSubPath() |
JIPipeTextAnnotationMergeMode |
ImportDataTableDirectory.getTextAnnotationMergeMode() |
JIPipeTextAnnotationMergeMode |
ImportDataTableArchive.getTextAnnotationMergeMode() |
OptionalTextAnnotationNameParameter |
AnnotateWithPathProperties.getTypeAnnotation() |
boolean |
ModifyPath.isAccessAnnotations() |
boolean |
CopyPath.isAppendDirectoryNameToTarget() |
boolean |
ExportDataByParameter2.isForceName() |
boolean |
SimplePathAnnotationGenerator.isFullPath() |
boolean |
ImportDataTableDirectory.isIgnoreImportedDataAnnotations() |
boolean |
ImportDataTableArchive.isIgnoreImportedDataAnnotations() |
boolean |
ImportDataTableDirectory.isIgnoreImportedTextAnnotations() |
boolean |
ImportDataTableArchive.isIgnoreImportedTextAnnotations() |
boolean |
ImportDataTableDirectory.isIgnoreInputDataAnnotations() |
boolean |
ImportDataTableArchive.isIgnoreInputDataAnnotations() |
boolean |
ImportDataTableDirectory.isIgnoreInputTextAnnotations() |
boolean |
ImportDataTableArchive.isIgnoreInputTextAnnotations() |
boolean |
FilterPaths.isOutputFiles() |
boolean |
FilterPaths.isOutputFolders() |
boolean |
FilterPaths.isOutputNonExisting() |
boolean |
ListFiles.isRecursive() |
boolean |
ListSubfolders.isRecursive() |
boolean |
ListFiles.isRecursiveFollowsLinks() |
boolean |
ListSubfolders.isRecursiveFollowsLinks() |
boolean |
ExportDataByParameter.isRelativeToProjectDir() |
boolean |
ExportDataTableByParameter.isRelativeToProjectDir() |
boolean |
SimplePathAnnotationGenerator.isRemoveExtensions() |
boolean |
CopyPath.isSkipExisting() |
boolean |
CopyPath.isSkipInvalid() |
boolean |
ExportData.isSplitBySlotName() |
boolean |
ExportDataByParameter.isSplitBySlotName() |
boolean |
CreateDirectory.isWithParents() |
void |
ModifyPath.setAccessAnnotations(boolean accessAnnotations) |
void |
AnnotationToPath.setAnnotationExpression(AnnotationQueryExpression annotationExpression) |
void |
SimplePathAnnotationGenerator.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy) |
void |
ImportDataRowFolder.setAnnotations(StringAndStringPairParameter.List annotations) |
void |
CopyPath.setAppendDirectoryNameToTarget(boolean appendDirectoryNameToTarget) |
void |
AnnotationTableToPaths.setColumn(TableColumnSourceExpressionParameter column) |
void |
ImportDataTableDirectory.setDataAnnotationMergeMode(JIPipeDataAnnotationMergeMode dataAnnotationMergeMode) |
void |
ImportDataTableArchive.setDataAnnotationMergeMode(JIPipeDataAnnotationMergeMode dataAnnotationMergeMode) |
void |
ImportDataRowFolder.setDataType(JIPipeDataInfoRef dataType) |
void |
ModifyPathWithExpression.setExpression(JIPipeExpressionParameter expression) |
void |
ModifyPath.setExpression(PathQueryExpression expression) |
void |
AnnotateWithPathProperties.setFileNameAnnotation(OptionalTextAnnotationNameParameter fileNameAnnotation) |
void |
ExportDataByParameter2.setFilePath(DataExportExpressionParameter filePath) |
void |
ConvertToExportedPath.setFilePath(DataExportExpressionParameter filePath) |
void |
FilterPaths.setFilters(PathQueryExpression filters) |
void |
ListFiles.setFilters(PathQueryExpression filters) |
void |
ListSubfolders.setFilters(PathQueryExpression filters) |
void |
ExportDataByParameter2.setForceName(boolean forceName) |
void |
SimplePathAnnotationGenerator.setFullPath(boolean fullPath) |
void |
SimpleFolderAnnotationGenerator.setGeneratedAnnotation(String generatedAnnotation)
Sets the generated annotation type
|
void |
SimplePathAnnotationGenerator.setGeneratedAnnotation(String generatedAnnotation) |
void |
SimpleFileAnnotationGenerator.setGeneratedAnnotation(String generatedAnnotation)
Sets generated annotation type
|
void |
ImportDataTableDirectory.setIgnoreImportedDataAnnotations(boolean ignoreImportedDataAnnotations) |
void |
ImportDataTableArchive.setIgnoreImportedDataAnnotations(boolean ignoreImportedDataAnnotations) |
void |
ImportDataTableDirectory.setIgnoreImportedTextAnnotations(boolean ignoreImportedTextAnnotations) |
void |
ImportDataTableArchive.setIgnoreImportedTextAnnotations(boolean ignoreImportedTextAnnotations) |
void |
ImportDataTableDirectory.setIgnoreInputDataAnnotations(boolean ignoreInputDataAnnotations) |
void |
ImportDataTableArchive.setIgnoreInputDataAnnotations(boolean ignoreInputDataAnnotations) |
void |
ImportDataTableDirectory.setIgnoreInputTextAnnotations(boolean ignoreInputTextAnnotations) |
void |
ImportDataTableArchive.setIgnoreInputTextAnnotations(boolean ignoreInputTextAnnotations) |
void |
ImportDataTableArchive.setInternalPath(String internalPath) |
void |
AnnotateWithPathProperties.setLastModifiedTime(OptionalTextAnnotationNameParameter lastModifiedTime) |
void |
ExtractParent.setOrder(int order) |
void |
ExportDataByParameter.setOutputDirectory(Path outputDirectory) |
void |
ExportDataTableByParameter.setOutputDirectory(Path outputDirectory) |
void |
FilterPaths.setOutputFiles(boolean outputFiles) |
void |
FilterPaths.setOutputFolders(boolean outputFolders) |
void |
FilterPaths.setOutputNonExisting(boolean outputNonExisting) |
void |
RelativizeByParameter.setParentPath(Path parentPath)
Sets the subfolder
|
void |
AnnotateWithPathProperties.setParentPathAnnotation(OptionalTextAnnotationNameParameter parentPathAnnotation) |
void |
RenameByString.setPathName(String pathName)
Sets the subfolder
|
void |
ListFiles.setRecursive(boolean recursive) |
void |
ListSubfolders.setRecursive(boolean recursive) |
void |
ListFiles.setRecursiveFollowsLinks(boolean recursiveFollowsLinks) |
void |
ListSubfolders.setRecursiveFollowsLinks(boolean recursiveFollowsLinks) |
void |
ExportDataByParameter.setRelativeToProjectDir(boolean relativeToProjectDir) |
void |
ExportDataTableByParameter.setRelativeToProjectDir(boolean relativeToProjectDir) |
void |
SimplePathAnnotationGenerator.setRemoveExtensions(boolean removeExtensions) |
void |
AnnotateWithPathProperties.setSizeAnnotation(OptionalTextAnnotationNameParameter sizeAnnotation) |
void |
CopyPath.setSkipExisting(boolean skipExisting) |
void |
CopyPath.setSkipInvalid(boolean skipInvalid) |
void |
ExportData.setSplitBySlotName(boolean splitBySlotName) |
void |
ExportDataByParameter.setSplitBySlotName(boolean splitBySlotName) |
void |
ListFiles.setSubFolder(String subFolder) |
void |
ListSubfolders.setSubFolder(String subFolder) |
void |
ConcatenateByParameter.setSubPath(Path subPath)
Sets the subfolder
|
void |
ImportDataTableDirectory.setTextAnnotationMergeMode(JIPipeTextAnnotationMergeMode textAnnotationMergeMode) |
void |
ImportDataTableArchive.setTextAnnotationMergeMode(JIPipeTextAnnotationMergeMode textAnnotationMergeMode) |
void |
AnnotateWithPathProperties.setTypeAnnotation(OptionalTextAnnotationNameParameter typeAnnotation) |
void |
CreateDirectory.setWithParents(boolean withParents)
Sets the subfolder
|
Modifier and Type | Method and Description |
---|---|
String |
TemporaryFolderDataSource.getBaseName() |
Path |
FileDataSource.getFileName() |
PathList |
FileListDataSource.getFiles() |
Path |
FolderDataSource.getFolderPath() |
PathList |
FolderListDataSource.getFolderPaths() |
String |
ProjectUserFolderDataSource.getKey() |
Path |
PathDataSource.getPath() |
PathIOMode |
PathFromUserDataSource.getPathIOMode() |
PathList |
PathListDataSource.getPaths() |
PathType |
PathFromUserDataSource.getPathType() |
String |
TemporaryFileDataSource.getPrefix() |
String |
TemporaryFileDataSource.getSuffix() |
StringList |
DownloadFilesDataSource.getUrls() |
boolean |
PathFromUserDataSource.isMultiple() |
boolean |
PathDataSource.isNeedsToExist() |
boolean |
FolderDataSource.isNeedsToExist() |
boolean |
FileDataSource.isNeedsToExist() |
boolean |
TemporaryFolderDataSource.isUseScratchDirectory() |
void |
TemporaryFolderDataSource.setBaseName(String baseName) |
void |
FileDataSource.setFileName(Path fileName)
Sets the file name
|
void |
FileListDataSource.setFiles(PathList files)
Sets the file names
|
void |
FolderDataSource.setFolderPath(Path folderPath)
Sets the folder path
|
void |
FolderListDataSource.setFolderPaths(PathList folderPaths)
Sets the folder path
|
void |
ProjectUserFolderDataSource.setKey(String key) |
void |
PathFromUserDataSource.setMultiple(boolean multiple) |
void |
PathDataSource.setNeedsToExist(boolean needsToExist) |
void |
FolderDataSource.setNeedsToExist(boolean needsToExist) |
void |
FileDataSource.setNeedsToExist(boolean needsToExist) |
void |
PathDataSource.setPath(Path path)
Sets the file name
|
void |
PathFromUserDataSource.setPathIOMode(PathIOMode pathIOMode) |
void |
PathListDataSource.setPaths(PathList paths)
Sets the folder path
|
void |
PathFromUserDataSource.setPathType(PathType pathType) |
void |
TemporaryFileDataSource.setPrefix(String prefix) |
void |
TemporaryFileDataSource.setSuffix(String suffix) |
void |
DownloadFilesDataSource.setUrls(StringList urls) |
void |
TemporaryFolderDataSource.setUseScratchDirectory(boolean useScratchDirectory) |
Modifier and Type | Method and Description |
---|---|
JIPipeMergingAlgorithmIterationStepGenerationSettings |
MergingFormProcessorAlgorithm.getDataBatchGenerationSettings() |
JIPipeSimpleIteratingAlgorithmIterationStepGenerationSettings |
SimpleIteratingFormProcessorAlgorithm.getDataBatchGenerationSettings() |
JIPipeMergingAlgorithmIterationStepGenerationSettings |
IteratingFormProcessorAlgorithm.getDataBatchGenerationSettings() |
FormData |
SimpleFormGeneratorAlgorithm.getFormData() |
String |
MergingFormProcessorAlgorithm.getTabAnnotation() |
String |
SimpleIteratingFormProcessorAlgorithm.getTabAnnotation() |
String |
IteratingFormProcessorAlgorithm.getTabAnnotation() |
boolean |
IteratingFormProcessorAlgorithm.isRestoreAnnotations() |
void |
IteratingFormProcessorAlgorithm.setRestoreAnnotations(boolean restoreAnnotations) |
void |
MergingFormProcessorAlgorithm.setTabAnnotation(String tabAnnotation) |
void |
SimpleIteratingFormProcessorAlgorithm.setTabAnnotation(String tabAnnotation) |
void |
IteratingFormProcessorAlgorithm.setTabAnnotation(String tabAnnotation) |
Modifier and Type | Method and Description |
---|---|
JIPipeTextAnnotationMergeMode |
SingleAnnotationIOSettings.getAnnotationMergeStrategy() |
OptionalTextAnnotationNameParameter |
SingleAnnotationIOSettings.getInputAnnotation() |
OptionalTextAnnotationNameParameter |
SingleAnnotationIOSettings.getOutputAnnotation() |
void |
SingleAnnotationIOSettings.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy) |
void |
SingleAnnotationIOSettings.setInputAnnotation(OptionalTextAnnotationNameParameter inputAnnotation) |
void |
SingleAnnotationIOSettings.setOutputAnnotation(OptionalTextAnnotationNameParameter outputAnnotation) |
Modifier and Type | Method and Description |
---|---|
Anchor |
ImageBoxAnnotationGraphNode.ImageParameters.getAnchor() |
Anchor |
AbstractTextBoxAnnotationGraphNode.TextLocationParameters.getAnchor() |
int |
ArrowAnnotationGraphNode.getAngle() |
int |
ArrowAnnotationGraphNode.getArrowSize() |
OptionalColorParameter |
ImageBoxAnnotationGraphNode.ImageParameters.getBackgroundColor() |
Color |
ImageBoxAnnotationGraphNode.ImageParameters.getBorderColor() |
Color |
TextBoxAnnotationGraphNode.ShapeParameters.getBorderColor() |
int |
ImageBoxAnnotationGraphNode.ImageParameters.getBorderThickness() |
int |
TextBoxAnnotationGraphNode.ShapeParameters.getBorderThickness() |
Color |
AbstractTextBoxAnnotationGraphNode.TextRenderParameters.getColor() |
Color |
ArrowAnnotationGraphNode.getColor() |
AbstractTextBoxAnnotationGraphNode.TextRenderParameters |
AbstractTextBoxAnnotationGraphNode.getContentStyle() |
OptionalColorParameter |
TextBoxAnnotationGraphNode.ShapeParameters.getFillColor() |
SizeFitMode |
ImageBoxAnnotationGraphNode.ImageParameters.getFitMode() |
FontFamilyParameter |
AbstractTextBoxAnnotationGraphNode.TextRenderParameters.getFontFamily() |
int |
AbstractTextBoxAnnotationGraphNode.TextRenderParameters.getFontSize() |
FontStyleParameter |
AbstractTextBoxAnnotationGraphNode.TextRenderParameters.getFontStyle() |
ImageParameter |
ImageBoxAnnotationGraphNode.ImageParameters.getImage() |
ImageBoxAnnotationGraphNode.ImageParameters |
ImageBoxAnnotationGraphNode.getImageParameters() |
int |
ArrowAnnotationGraphNode.getLineThickness() |
int |
ImageBoxAnnotationGraphNode.ImageParameters.getMarginBottom() |
int |
AbstractTextBoxAnnotationGraphNode.TextLocationParameters.getMarginBottom() |
int |
ImageBoxAnnotationGraphNode.ImageParameters.getMarginLeft() |
int |
AbstractTextBoxAnnotationGraphNode.TextLocationParameters.getMarginLeft() |
int |
ImageBoxAnnotationGraphNode.ImageParameters.getMarginRight() |
int |
AbstractTextBoxAnnotationGraphNode.TextLocationParameters.getMarginRight() |
int |
ImageBoxAnnotationGraphNode.ImageParameters.getMarginTop() |
int |
AbstractTextBoxAnnotationGraphNode.TextLocationParameters.getMarginTop() |
double |
ImageBoxAnnotationGraphNode.ImageParameters.getScaleX() |
double |
ImageBoxAnnotationGraphNode.ImageParameters.getScaleY() |
TextBoxAnnotationGraphNode.ShapeParameters |
TextBoxAnnotationGraphNode.getShapeParameters() |
String |
AbstractTextBoxAnnotationGraphNode.getTextContent() |
AbstractTextBoxAnnotationGraphNode.TextLocationParameters |
AbstractTextBoxAnnotationGraphNode.getTextLocation() |
String |
AbstractTextBoxAnnotationGraphNode.getTextTitle() |
AbstractTextBoxAnnotationGraphNode.TextRenderParameters |
AbstractTextBoxAnnotationGraphNode.getTitleStyle() |
void |
ImageBoxAnnotationGraphNode.ImageParameters.setAnchor(Anchor anchor) |
void |
AbstractTextBoxAnnotationGraphNode.TextLocationParameters.setAnchor(Anchor anchor) |
void |
ArrowAnnotationGraphNode.setAngle(int angle) |
void |
ArrowAnnotationGraphNode.setArrowSize(int arrowSize) |
void |
ImageBoxAnnotationGraphNode.ImageParameters.setBackgroundColor(OptionalColorParameter backgroundColor) |
void |
ImageBoxAnnotationGraphNode.ImageParameters.setBorderColor(Color borderColor) |
void |
TextBoxAnnotationGraphNode.ShapeParameters.setBorderColor(Color borderColor) |
void |
ImageBoxAnnotationGraphNode.ImageParameters.setBorderThickness(int borderThickness) |
void |
TextBoxAnnotationGraphNode.ShapeParameters.setBorderThickness(int borderThickness) |
void |
AbstractTextBoxAnnotationGraphNode.TextRenderParameters.setColor(Color color) |
void |
ArrowAnnotationGraphNode.setColor(Color color) |
void |
TextBoxAnnotationGraphNode.ShapeParameters.setFillColor(OptionalColorParameter fillColor) |
void |
ImageBoxAnnotationGraphNode.ImageParameters.setFitMode(SizeFitMode fitMode) |
void |
AbstractTextBoxAnnotationGraphNode.TextRenderParameters.setFontFamily(FontFamilyParameter fontFamily) |
void |
AbstractTextBoxAnnotationGraphNode.TextRenderParameters.setFontSize(int fontSize) |
void |
AbstractTextBoxAnnotationGraphNode.TextRenderParameters.setFontStyle(FontStyleParameter fontStyle) |
void |
ImageBoxAnnotationGraphNode.ImageParameters.setImage(ImageParameter image) |
void |
ArrowAnnotationGraphNode.setLineThickness(int lineThickness) |
void |
ImageBoxAnnotationGraphNode.ImageParameters.setMarginBottom(int marginBottom) |
void |
AbstractTextBoxAnnotationGraphNode.TextLocationParameters.setMarginBottom(int marginBottom) |
void |
ImageBoxAnnotationGraphNode.ImageParameters.setMarginLeft(int marginLeft) |
void |
AbstractTextBoxAnnotationGraphNode.TextLocationParameters.setMarginLeft(int marginLeft) |
void |
ImageBoxAnnotationGraphNode.ImageParameters.setMarginRight(int marginRight) |
void |
AbstractTextBoxAnnotationGraphNode.TextLocationParameters.setMarginRight(int marginRight) |
void |
ImageBoxAnnotationGraphNode.ImageParameters.setMarginTop(int marginTop) |
void |
AbstractTextBoxAnnotationGraphNode.TextLocationParameters.setMarginTop(int marginTop) |
void |
ImageBoxAnnotationGraphNode.ImageParameters.setScaleX(double scaleX) |
void |
ImageBoxAnnotationGraphNode.ImageParameters.setScaleY(double scaleY) |
void |
AbstractTextBoxAnnotationGraphNode.setTextContent(String textContent) |
void |
AbstractTextBoxAnnotationGraphNode.setTextTitle(String textTitle) |
Modifier and Type | Method and Description |
---|---|
ROI3DMeasurementSetParameter |
Measurement3DSettings.getStatistics() |
boolean |
Measurement3DSettings.isMeasureInPhysicalUnits() |
boolean |
ImageViewerUIROI3DDisplaySettings.isRenderROIAsVolume() |
boolean |
ImageViewerUIROI3DDisplaySettings.isShowROI() |
void |
Measurement3DSettings.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits) |
void |
ImageViewerUIROI3DDisplaySettings.setRenderROIAsVolume(boolean renderROIAsVolume) |
void |
ImageViewerUIROI3DDisplaySettings.setShowROI(boolean showROI) |
void |
Measurement3DSettings.setStatistics(ROI3DMeasurementSetParameter statistics) |
Modifier and Type | Method and Description |
---|---|
float |
Voronoi3DAlgorithm.getMaxRadius() |
int |
Watershed3DSplittingAlgorithm.getRadius() |
int |
ErodedVolumeFraction3DAlgorithm.getThreshold() |
int |
DistanceMap3DAlgorithm.getThreshold() |
boolean |
ErodedVolumeFraction3DAlgorithm.isInverse() |
boolean |
DistanceMap3DAlgorithm.isInverse() |
void |
ErodedVolumeFraction3DAlgorithm.setInverse(boolean inverse) |
void |
DistanceMap3DAlgorithm.setInverse(boolean inverse) |
void |
Voronoi3DAlgorithm.setMaxRadius(float maxRadius) |
void |
Watershed3DSplittingAlgorithm.setRadius(int radius) |
void |
ErodedVolumeFraction3DAlgorithm.setThreshold(int threshold) |
void |
DistanceMap3DAlgorithm.setThreshold(int threshold) |
Modifier and Type | Method and Description |
---|---|
double |
EdgeFilter3DAlgorithm.getAlpha() |
double |
SymmetryFilter3DAlgorithm.getAlpha() |
float |
FindMaxima3DAlgorithm.getMinThreshold() |
float |
FindMaxima3DAlgorithm.getNoise() |
double |
SymmetryFilter3DAlgorithm.getNormalize() |
int |
SymmetryFilter3DAlgorithm.getRadius() |
float |
FindMaxima3DAlgorithm.getRadiusXY() |
float |
FindMaxima3DAlgorithm.getRadiusZ() |
double |
SymmetryFilter3DAlgorithm.getScaling() |
boolean |
SymmetryFilter3DAlgorithm.isImproved() |
void |
EdgeFilter3DAlgorithm.setAlpha(double alpha) |
void |
SymmetryFilter3DAlgorithm.setAlpha(double alpha) |
void |
SymmetryFilter3DAlgorithm.setImproved(boolean improved) |
void |
FindMaxima3DAlgorithm.setMinThreshold(float minThreshold) |
void |
FindMaxima3DAlgorithm.setNoise(float noise) |
void |
SymmetryFilter3DAlgorithm.setNormalize(double normalize) |
void |
SymmetryFilter3DAlgorithm.setRadius(int radius) |
void |
FindMaxima3DAlgorithm.setRadiusXY(float radiusXY) |
void |
FindMaxima3DAlgorithm.setRadiusZ(float radiusZ) |
void |
SymmetryFilter3DAlgorithm.setScaling(double scaling) |
Modifier and Type | Method and Description |
---|---|
Quantity |
Fast3DFiltersAlgorithm.getKernelX() |
Quantity |
Fast3DFiltersAlgorithm.getKernelY() |
Quantity |
Fast3DFiltersAlgorithm.getKernelZ() |
int |
Fast3DFiltersAlgorithm.getNumThreads() |
boolean |
Fast3DFiltersAlgorithm.isPreferIsotropicFilter() |
void |
Fast3DFiltersAlgorithm.setKernelX(Quantity kernelX) |
void |
Fast3DFiltersAlgorithm.setKernelY(Quantity kernelY) |
void |
Fast3DFiltersAlgorithm.setKernelZ(Quantity kernelZ) |
void |
Fast3DFiltersAlgorithm.setNumThreads(int numThreads) |
void |
Fast3DFiltersAlgorithm.setPreferIsotropicFilter(boolean preferIsotropicFilter) |
Modifier and Type | Method and Description |
---|---|
Roi3DDrawer |
RenderOverlay3DAlgorithm.getDrawer() |
Modifier and Type | Method and Description |
---|---|
JIPipeDataByMetadataExporter |
ExportROI3DAlgorithm.getExporter()
Deprecated.
|
DataExportExpressionParameter |
ExportROI3DAlgorithm2.getFilePath() |
Path |
ExportROI3DAlgorithm.getOutputDirectory()
Deprecated.
|
boolean |
ExportROI3DAlgorithm.isRelativeToProjectDir()
Deprecated.
|
void |
ExportROI3DAlgorithm2.setFilePath(DataExportExpressionParameter filePath) |
void |
ExportROI3DAlgorithm.setOutputDirectory(Path outputDirectory)
Deprecated.
|
void |
ExportROI3DAlgorithm.setRelativeToProjectDir(boolean relativeToProjectDir)
Deprecated.
|
Modifier and Type | Method and Description |
---|---|
Roi3DDrawer |
Roi3DToRGBAlgorithm.getDrawer() |
Quantity.LengthUnit |
Roi3DTo3DMeshAlgorithm.getMeshLengthUnit() |
String |
Roi3DTo3DMeshAlgorithm.getMeshNamePrefix() |
Neighborhood3D |
Roi2DToRoi3DConverterAlgorithm.getNeighborhood() |
OptionalColorParameter |
Roi3DTo3DMeshAlgorithm.getOverrideMeshColor() |
boolean |
Roi2DToRoi3DConverterAlgorithm.isFast() |
boolean |
Roi2DToRoi3DConverterAlgorithm.isForce2D() |
boolean |
Roi3DTo3DMeshAlgorithm.isForceMeshLengthUnit() |
boolean |
Roi3DTo3DMeshAlgorithm.isPhysicalSizes() |
boolean |
Roi3DTo3DMeshAlgorithm.isSmooth() |
void |
Roi2DToRoi3DConverterAlgorithm.setFast(boolean fast) |
void |
Roi2DToRoi3DConverterAlgorithm.setForce2D(boolean force2D) |
void |
Roi3DTo3DMeshAlgorithm.setForceMeshLengthUnit(boolean forceMeshLengthUnit) |
void |
Roi3DTo3DMeshAlgorithm.setMeshLengthUnit(Quantity.LengthUnit meshLengthUnit) |
void |
Roi3DTo3DMeshAlgorithm.setMeshNamePrefix(String meshNamePrefix) |
void |
Roi2DToRoi3DConverterAlgorithm.setNeighborhood(Neighborhood3D neighborhood) |
void |
Roi3DTo3DMeshAlgorithm.setOverrideMeshColor(OptionalColorParameter overrideMeshColor) |
void |
Roi3DTo3DMeshAlgorithm.setPhysicalSizes(boolean physicalSizes) |
void |
Roi3DTo3DMeshAlgorithm.setSmooth(boolean smooth) |
Modifier and Type | Method and Description |
---|---|
JIPipeExpressionParameter |
FilterRoi3DListsAlgorithm.getFilter() |
JIPipeExpressionParameter |
FilterRoi3DByStatisticsAlgorithm.getFilters() |
ROI3DMeasurementSetParameter |
FilterRoi3DByStatisticsAlgorithm.getMeasurements() |
JIPipeExpressionParameter |
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.getOverlapFilter() |
ROI3DRelationMeasurementSetParameter |
FilterRoi3DByOverlapAlgorithm.getOverlapFilterMeasurements() |
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings |
FilterRoi3DByOverlapAlgorithm.getRoi1Settings() |
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings |
FilterRoi3DByOverlapAlgorithm.getRoi2Settings() |
boolean |
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.isConsumeOnOverlap() |
boolean |
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.isEnabled() |
boolean |
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.isIgnoreC() |
boolean |
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.isIgnoreT() |
boolean |
FilterRoi3DListsAlgorithm.isIncludeAnnotations() |
boolean |
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.isInvert() |
boolean |
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.isMeasureInPhysicalUnits() |
boolean |
FilterRoi3DByStatisticsAlgorithm.isMeasureInPhysicalUnits() |
boolean |
FilterRoi3DListsAlgorithm.isOutputEmptyLists() |
boolean |
FilterRoi3DByStatisticsAlgorithm.isOutputEmptyLists() |
boolean |
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.isOutputOverlaps() |
boolean |
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.isPreciseColocalization() |
boolean |
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.isRequireColocalization() |
void |
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.setConsumeOnOverlap(boolean consumeOnOverlap) |
void |
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.setEnabled(boolean enabled) |
void |
FilterRoi3DListsAlgorithm.setFilter(JIPipeExpressionParameter filter) |
void |
FilterRoi3DByStatisticsAlgorithm.setFilters(JIPipeExpressionParameter filters) |
void |
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.setIgnoreC(boolean ignoreC) |
void |
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.setIgnoreT(boolean ignoreT) |
void |
FilterRoi3DListsAlgorithm.setIncludeAnnotations(boolean includeAnnotations) |
void |
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.setInvert(boolean invert) |
void |
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits) |
void |
FilterRoi3DByStatisticsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits) |
void |
FilterRoi3DByStatisticsAlgorithm.setMeasurements(ROI3DMeasurementSetParameter measurements) |
void |
FilterRoi3DListsAlgorithm.setOutputEmptyLists(boolean outputEmptyLists) |
void |
FilterRoi3DByStatisticsAlgorithm.setOutputEmptyLists(boolean outputEmptyLists) |
void |
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.setOutputOverlaps(boolean outputOverlaps) |
void |
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.setOverlapFilter(JIPipeExpressionParameter overlapFilter) |
void |
FilterRoi3DByOverlapAlgorithm.setOverlapFilterMeasurements(ROI3DRelationMeasurementSetParameter overlapFilterMeasurements) |
void |
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.setPreciseColocalization(boolean preciseColocalization) |
void |
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.setRequireColocalization(boolean requireColocalization) |
Modifier and Type | Method and Description |
---|---|
double |
FindParticles3DAlgorithm.getMaxParticleSize() |
double |
Roi3DFromLabelsAlgorithm.getMaxParticleSize() |
double |
FindParticles3DAlgorithm.getMaxParticleSphericity() |
double |
Roi3DFromLabelsAlgorithm.getMaxParticleSphericity() |
double |
FindParticles3DAlgorithm.getMinParticleSize() |
double |
Roi3DFromLabelsAlgorithm.getMinParticleSize() |
double |
FindParticles3DAlgorithm.getMinParticleSphericity() |
double |
Roi3DFromLabelsAlgorithm.getMinParticleSphericity() |
Neighborhood3D |
FindParticles3DAlgorithm.getNeighborhood() |
boolean |
FindParticles3DAlgorithm.isBlackBackground() |
boolean |
FindParticles3DAlgorithm.isExcludeEdges() |
boolean |
Roi3DFromLabelsAlgorithm.isExcludeEdges() |
boolean |
FindParticles3DAlgorithm.isMeasureInPhysicalUnits() |
boolean |
Roi3DFromLabelsAlgorithm.isMeasureInPhysicalUnits() |
void |
FindParticles3DAlgorithm.setBlackBackground(boolean blackBackground) |
void |
FindParticles3DAlgorithm.setExcludeEdges(boolean excludeEdges) |
void |
Roi3DFromLabelsAlgorithm.setExcludeEdges(boolean excludeEdges) |
void |
FindParticles3DAlgorithm.setMaxParticleSize(double maxParticleSize) |
void |
Roi3DFromLabelsAlgorithm.setMaxParticleSize(double maxParticleSize) |
boolean |
FindParticles3DAlgorithm.setMaxParticleSphericity(double maxParticleSphericity) |
boolean |
Roi3DFromLabelsAlgorithm.setMaxParticleSphericity(double maxParticleSphericity) |
void |
FindParticles3DAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits) |
void |
Roi3DFromLabelsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits) |
void |
FindParticles3DAlgorithm.setMinParticleSize(double minParticleSize) |
void |
Roi3DFromLabelsAlgorithm.setMinParticleSize(double minParticleSize) |
boolean |
FindParticles3DAlgorithm.setMinParticleSphericity(double minParticleSphericity) |
boolean |
Roi3DFromLabelsAlgorithm.setMinParticleSphericity(double minParticleSphericity) |
void |
FindParticles3DAlgorithm.setNeighborhood(Neighborhood3D neighborhood) |
Modifier and Type | Method and Description |
---|---|
ROI3DMeasurementSetParameter |
ExtractRoi3DStatisticsAlgorithm.getMeasurements() |
ROI3DRelationMeasurementSetParameter |
ExtractRoi3DRelationStatisticsAlgorithm.getMeasurements() |
boolean |
ExtractRoi3DRelationStatisticsAlgorithm.isIgnoreC() |
boolean |
ExtractRoi3DRelationStatisticsAlgorithm.isIgnoreT() |
boolean |
ExtractRoi3DStatisticsAlgorithm.isMeasureInPhysicalUnits() |
boolean |
ExtractRoi3DRelationStatisticsAlgorithm.isMeasureInPhysicalUnits() |
boolean |
ExtractRoi3DRelationStatisticsAlgorithm.isPreciseColocalization() |
boolean |
ExtractRoi3DRelationStatisticsAlgorithm.isRequireColocalization() |
void |
ExtractRoi3DRelationStatisticsAlgorithm.setIgnoreC(boolean ignoreC) |
void |
ExtractRoi3DRelationStatisticsAlgorithm.setIgnoreT(boolean ignoreT) |
void |
ExtractRoi3DStatisticsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits) |
void |
ExtractRoi3DRelationStatisticsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits) |
void |
ExtractRoi3DStatisticsAlgorithm.setMeasurements(ROI3DMeasurementSetParameter measurements) |
void |
ExtractRoi3DRelationStatisticsAlgorithm.setMeasurements(ROI3DRelationMeasurementSetParameter measurements) |
void |
ExtractRoi3DRelationStatisticsAlgorithm.setPreciseColocalization(boolean preciseColocalization) |
void |
ExtractRoi3DRelationStatisticsAlgorithm.setRequireColocalization(boolean requireColocalization) |
Modifier and Type | Method and Description |
---|---|
JIPipeExpressionParameter |
RemoveROI3DMetadataAlgorithm.getFilterExpression() |
OptionalStringParameter |
ExtractROI3DMetadataAlgorithm.getIndexColumn() |
OptionalStringParameter |
ExtractROI3DMetadataAlgorithm.getNameColumn() |
TableColumnSourceExpressionParameter |
SetROI3DMetadataFromTableAlgorithm.getRoiIndexColumn() |
boolean |
SetROI3DMetadataFromTableAlgorithm.isClearBeforeWrite() |
boolean |
SetROI3DMetadataFromTableAlgorithm.isIgnoreMissingRoiIndices() |
void |
SetROI3DMetadataFromTableAlgorithm.setClearBeforeWrite(boolean clearBeforeWrite) |
void |
RemoveROI3DMetadataAlgorithm.setFilterExpression(JIPipeExpressionParameter filterExpression) |
void |
SetROI3DMetadataFromTableAlgorithm.setIgnoreMissingRoiIndices(boolean ignoreMissingRoiIndices) |
void |
ExtractROI3DMetadataAlgorithm.setIndexColumn(OptionalStringParameter indexColumn) |
void |
ExtractROI3DMetadataAlgorithm.setNameColumn(OptionalStringParameter nameColumn) |
void |
SetROI3DMetadataFromTableAlgorithm.setRoiIndexColumn(TableColumnSourceExpressionParameter roiIndexColumn) |
Modifier and Type | Method and Description |
---|---|
OptionalDoubleParameter |
ChangeRoi3DPropertiesAlgorithm.getCenterX() |
OptionalJIPipeExpressionParameter |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.getCenterX() |
OptionalDoubleParameter |
ChangeRoi3DPropertiesAlgorithm.getCenterY() |
OptionalJIPipeExpressionParameter |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.getCenterY() |
OptionalDoubleParameter |
ChangeRoi3DPropertiesAlgorithm.getCenterZ() |
OptionalJIPipeExpressionParameter |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.getCenterZ() |
OptionalIntegerParameter |
ChangeRoi3DPropertiesAlgorithm.getChannelLocation() |
OptionalJIPipeExpressionParameter |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.getChannelLocation() |
OptionalColorParameter |
ChangeRoi3DPropertiesAlgorithm.getFillColor() |
OptionalJIPipeExpressionParameter |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.getFillColor() |
ROI3DMeasurementColumn |
ColorRoi3DByStatisticsAlgorithm.getFillMeasurement() |
OptionalIntegerParameter |
ChangeRoi3DPropertiesAlgorithm.getFrameLocation() |
OptionalJIPipeExpressionParameter |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.getFrameLocation() |
OptionalColorMapParameter |
ColorRoi3DByNameAlgorithm.getMapFillColor() |
OptionalColorMapParameter |
ColorRoi3DByStatisticsAlgorithm.getMapFillColor() |
ROI3DMeasurementSetParameter |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.getMeasurements() |
ParameterCollectionList |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.getMetadataEntries() |
String |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.MetadataEntry.getMetadataName() |
OptionalJIPipeExpressionParameter |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.MetadataEntry.getMetadataValue() |
LogicalOperation |
ROI3DCalculatorAlgorithm.getOperation() |
OptionalStringParameter |
ChangeRoi3DPropertiesAlgorithm.getRoiComment() |
OptionalJIPipeExpressionParameter |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.getRoiComment() |
OptionalStringParameter |
ChangeRoi3DPropertiesAlgorithm.getRoiName() |
OptionalJIPipeExpressionParameter |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.getRoiName() |
boolean |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.isMeasureInPhysicalUnits() |
boolean |
ColorRoi3DByStatisticsAlgorithm.isMeasureInPhysicalUnits() |
void |
ChangeRoi3DPropertiesAlgorithm.setCenterX(OptionalDoubleParameter centerX) |
void |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.setCenterX(OptionalJIPipeExpressionParameter centerX) |
void |
ChangeRoi3DPropertiesAlgorithm.setCenterY(OptionalDoubleParameter centerY) |
void |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.setCenterY(OptionalJIPipeExpressionParameter centerY) |
void |
ChangeRoi3DPropertiesAlgorithm.setCenterZ(OptionalDoubleParameter centerZ) |
void |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.setCenterZ(OptionalJIPipeExpressionParameter centerZ) |
void |
ChangeRoi3DPropertiesAlgorithm.setChannelLocation(OptionalIntegerParameter channelLocation) |
void |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.setChannelLocation(OptionalJIPipeExpressionParameter channelLocation) |
void |
ChangeRoi3DPropertiesAlgorithm.setFillColor(OptionalColorParameter fillColor) |
void |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.setFillColor(OptionalJIPipeExpressionParameter fillColor) |
void |
ColorRoi3DByStatisticsAlgorithm.setFillMeasurement(ROI3DMeasurementColumn fillMeasurement) |
void |
ChangeRoi3DPropertiesAlgorithm.setFrameLocation(OptionalIntegerParameter frameLocation) |
void |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.setFrameLocation(OptionalJIPipeExpressionParameter frameLocation) |
void |
ColorRoi3DByNameAlgorithm.setMapFillColor(OptionalColorMapParameter mapFillColor) |
void |
ColorRoi3DByStatisticsAlgorithm.setMapFillColor(OptionalColorMapParameter mapFillColor) |
void |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits) |
void |
ColorRoi3DByStatisticsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits) |
void |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.setMeasurements(ROI3DMeasurementSetParameter measurements) |
void |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.setMetadataEntries(ParameterCollectionList metadataEntries) |
void |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.MetadataEntry.setMetadataName(String metadataName) |
void |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.MetadataEntry.setMetadataValue(OptionalJIPipeExpressionParameter metadataValue) |
void |
ROI3DCalculatorAlgorithm.setOperation(LogicalOperation operation) |
void |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.setRoiComment(OptionalJIPipeExpressionParameter roiComment) |
void |
ChangeRoi3DPropertiesAlgorithm.setRoiComment(OptionalStringParameter roiComment) |
void |
ChangeRoi3DPropertiesFromExpressionsAlgorithm.setRoiName(OptionalJIPipeExpressionParameter roiName) |
void |
ChangeRoi3DPropertiesAlgorithm.setRoiName(OptionalStringParameter roiName) |
Modifier and Type | Method and Description |
---|---|
double |
RemoveBorderRoi3DAlgorithm.getBorderDistance() |
ROI3DOutline |
OutlineRoi3DAlgorithm.getOutline() |
boolean |
OutlineRoi3DAlgorithm.isIgnoreErrors() |
boolean |
RemoveBorderRoi3DAlgorithm.isRemoveInX() |
boolean |
RemoveBorderRoi3DAlgorithm.isRemoveInY() |
boolean |
RemoveBorderRoi3DAlgorithm.isRemoveInZ() |
void |
RemoveBorderRoi3DAlgorithm.setBorderDistance(double borderDistance) |
void |
OutlineRoi3DAlgorithm.setIgnoreErrors(boolean ignoreErrors) |
void |
OutlineRoi3DAlgorithm.setOutline(ROI3DOutline outline) |
void |
RemoveBorderRoi3DAlgorithm.setRemoveInX(boolean removeInX) |
void |
RemoveBorderRoi3DAlgorithm.setRemoveInY(boolean removeInY) |
void |
RemoveBorderRoi3DAlgorithm.setRemoveInZ(boolean removeInZ) |
Modifier and Type | Method and Description |
---|---|
JIPipeExpressionParameter |
ExplodeRoi3DListAlgorithm.getAnnotationValue() |
OptionalTextAnnotationNameParameter |
SplitRoi3DIntoConnectedComponentsAlgorithm.getComponentNameAnnotation() |
OptionalStringParameter |
ExplodeRoi3DListAlgorithm.getGeneratedAnnotation() |
JIPipeExpressionParameter |
SplitRoi3DIntoConnectedComponentsAlgorithm.getOverlapFilter() |
ROI3DRelationMeasurementSetParameter |
SplitRoi3DIntoConnectedComponentsAlgorithm.getOverlapFilterMeasurements() |
boolean |
SplitRoi3DIntoConnectedComponentsAlgorithm.isIgnoreC() |
boolean |
SplitRoi3DIntoConnectedComponentsAlgorithm.isIgnoreT() |
boolean |
SplitRoi3DIntoConnectedComponentsAlgorithm.isMeasureInPhysicalUnits() |
boolean |
SplitRoi3DIntoConnectedComponentsAlgorithm.isPreciseColocalization() |
boolean |
SplitRoi3DIntoConnectedComponentsAlgorithm.isRequireColocalization() |
void |
ExplodeRoi3DListAlgorithm.setAnnotationValue(JIPipeExpressionParameter annotationValue) |
void |
SplitRoi3DIntoConnectedComponentsAlgorithm.setComponentNameAnnotation(OptionalTextAnnotationNameParameter componentNameAnnotation) |
void |
ExplodeRoi3DListAlgorithm.setGeneratedAnnotation(OptionalStringParameter generatedAnnotation) |
void |
SplitRoi3DIntoConnectedComponentsAlgorithm.setIgnoreC(boolean ignoreC) |
void |
SplitRoi3DIntoConnectedComponentsAlgorithm.setIgnoreT(boolean ignoreT) |
void |
SplitRoi3DIntoConnectedComponentsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits) |
void |
SplitRoi3DIntoConnectedComponentsAlgorithm.setOverlapFilter(JIPipeExpressionParameter overlapFilter) |
void |
SplitRoi3DIntoConnectedComponentsAlgorithm.setOverlapFilterMeasurements(ROI3DRelationMeasurementSetParameter overlapFilterMeasurements) |
void |
SplitRoi3DIntoConnectedComponentsAlgorithm.setPreciseColocalization(boolean preciseColocalization) |
void |
SplitRoi3DIntoConnectedComponentsAlgorithm.setRequireColocalization(boolean requireColocalization) |
Modifier and Type | Method and Description |
---|---|
ij.process.AutoThresholder.Method |
NucleiSegmentation3DAlgorithm.getAutoThresholdMethod() |
IterativeThreshold3DAlgorithm.CriteriaMethod |
IterativeThreshold3DAlgorithm.getCriteriaMethod() |
OptionalIntegerParameter |
NucleiSegmentation3DAlgorithm.getCustomThreshold() |
float |
DifferenceSpotSegmentation3DAlgorithm.getDifference() |
double |
GaussianFitSpotSegmentation3DAlgorithm.getGaussPC() |
float |
HysteresisSegmentation3DAlgorithm.getHighThreshold() |
int |
ConstantSpotSegmentation3DAlgorithm.getLocalBackground() |
float |
HysteresisSegmentation3DAlgorithm.getLowThreshold() |
int |
GaussianFitSpotSegmentation3DAlgorithm.getMaxRadius() |
int |
IterativeThreshold3DAlgorithm.getMaxVolumePixels() |
int |
SpotSegmentation3DAlgorithm.getMaxVolumePixels() |
int |
IterativeThreshold3DAlgorithm.getMinContrastExp() |
int |
IterativeThreshold3DAlgorithm.getMinThreshold() |
int |
IterativeThreshold3DAlgorithm.getMinVolumePixels() |
int |
SpotSegmentation3DAlgorithm.getMinVolumePixels() |
float |
SeedSegmentationSettings.getRadius() |
float |
LocalMeanSpotSegmentation3DAlgorithm.getRadius0() |
float |
LocalMeanSpotSegmentation3DAlgorithm.getRadius1() |
float |
LocalMeanSpotSegmentation3DAlgorithm.getRadius2() |
SeedSegmentationSettings |
SpotSegmentation3DAlgorithm.getSeedSegmentationSettings() |
SeedSegmentationSettings |
Watershed3DSegmentationAlgorithm.getSeedSegmentationSettings() |
int |
SpotSegmentation3DAlgorithm.getSeedsThreshold() |
int |
Watershed3DSegmentationAlgorithm.getSeedsThreshold() |
SpotSegmentation3DAlgorithm.SpotSegmentationMethod |
SpotSegmentation3DAlgorithm.SpotSegmentationSettings.getSegmentationMethod() |
IterativeThreshold3DAlgorithm.SegmentResultsMethod |
IterativeThreshold3DAlgorithm.getSegmentResultsMethod() |
SpotSegmentation3DAlgorithm.SpotSegmentationSettings |
SpotSegmentation3DAlgorithm.getSpotSegmentationSettings() |
IterativeThreshold3DAlgorithm.ThresholdMethod |
IterativeThreshold3DAlgorithm.getThresholdMethod() |
int |
IterativeThreshold3DAlgorithm.getValueMethod() |
int |
Watershed3DSegmentationAlgorithm.getVoxelsThreshold() |
float |
LocalMeanSpotSegmentation3DAlgorithm.getWeight() |
boolean |
IterativeThreshold3DAlgorithm.isEnableFiltering() |
boolean |
SpotSegmentation3DAlgorithm.isEnableWatershed() |
boolean |
HysteresisSegmentation3DAlgorithm.isLabeling() |
boolean |
SpotSegmentation3DAlgorithm.isOutput32bit() |
boolean |
NucleiSegmentation3DAlgorithm.isSeparateNuclei() |
boolean |
IterativeThreshold3DAlgorithm.isStartsAtMean() |
void |
NucleiSegmentation3DAlgorithm.setAutoThresholdMethod(ij.process.AutoThresholder.Method autoThresholdMethod) |
void |
IterativeThreshold3DAlgorithm.setCriteriaMethod(IterativeThreshold3DAlgorithm.CriteriaMethod criteriaMethod) |
void |
NucleiSegmentation3DAlgorithm.setCustomThreshold(OptionalIntegerParameter customThreshold) |
void |
DifferenceSpotSegmentation3DAlgorithm.setDifference(float difference) |
void |
IterativeThreshold3DAlgorithm.setEnableFiltering(boolean enableFiltering) |
void |
SpotSegmentation3DAlgorithm.setEnableWatershed(boolean enableWatershed) |
void |
GaussianFitSpotSegmentation3DAlgorithm.setGaussPC(double gaussPC) |
void |
HysteresisSegmentation3DAlgorithm.setHighThreshold(float highThreshold) |
void |
HysteresisSegmentation3DAlgorithm.setLabeling(boolean labeling) |
void |
ConstantSpotSegmentation3DAlgorithm.setLocalBackground(int localBackground) |
void |
HysteresisSegmentation3DAlgorithm.setLowThreshold(float lowThreshold) |
void |
GaussianFitSpotSegmentation3DAlgorithm.setMaxRadius(int maxRadius) |
void |
IterativeThreshold3DAlgorithm.setMaxVolumePixels(int maxVolumePixels) |
void |
SpotSegmentation3DAlgorithm.setMaxVolumePixels(int maxVolumePixels) |
void |
IterativeThreshold3DAlgorithm.setMinContrastExp(int minContrastExp) |
void |
IterativeThreshold3DAlgorithm.setMinThreshold(int minThreshold) |
void |
IterativeThreshold3DAlgorithm.setMinVolumePixels(int minVolumePixels) |
void |
SpotSegmentation3DAlgorithm.setMinVolumePixels(int minVolumePixels) |
void |
SpotSegmentation3DAlgorithm.setOutput32bit(boolean output32bit) |
void |
SeedSegmentationSettings.setRadius(float radius) |
void |
LocalMeanSpotSegmentation3DAlgorithm.setRadius0(float radius0) |
void |
LocalMeanSpotSegmentation3DAlgorithm.setRadius1(float radius1) |
void |
LocalMeanSpotSegmentation3DAlgorithm.setRadius2(float radius2) |
void |
SpotSegmentation3DAlgorithm.setSeedsThreshold(int seedsThreshold) |
void |
Watershed3DSegmentationAlgorithm.setSeedsThreshold(int seedsThreshold) |
void |
SpotSegmentation3DAlgorithm.SpotSegmentationSettings.setSegmentationMethod(SpotSegmentation3DAlgorithm.SpotSegmentationMethod segmentationMethod) |
void |
IterativeThreshold3DAlgorithm.setSegmentResultsMethod(IterativeThreshold3DAlgorithm.SegmentResultsMethod segmentResultsMethod) |
void |
NucleiSegmentation3DAlgorithm.setSeparateNuclei(boolean separateNuclei) |
void |
IterativeThreshold3DAlgorithm.setStartsAtMean(boolean startsAtMean) |
void |
IterativeThreshold3DAlgorithm.setThresholdMethod(IterativeThreshold3DAlgorithm.ThresholdMethod thresholdMethod) |
void |
IterativeThreshold3DAlgorithm.setValueMethod(int valueMethod) |
void |
Watershed3DSegmentationAlgorithm.setVoxelsThreshold(int voxelsThreshold) |
void |
LocalMeanSpotSegmentation3DAlgorithm.setWeight(float weight) |
Modifier and Type | Method and Description |
---|---|
double |
Roi3DDrawer.getOpacity() |
OptionalColorParameter |
Roi3DDrawer.getOverrideFillColor() |
boolean |
Roi3DDrawer.isDrawOver() |
void |
Roi3DDrawer.setDrawOver(boolean drawOver) |
boolean |
Roi3DDrawer.setOpacity(double opacity) |
void |
Roi3DDrawer.setOverrideFillColor(OptionalColorParameter overrideFillColor) |
Modifier and Type | Method and Description |
---|---|
FilamentsDrawer |
ConvertFilamentsToRGBAlgorithm.getFilamentsDrawer() |
OptionalIntegerParameter |
ConvertFilamentsToRoi3DAlgorithm.getForcedLineThickness() |
OptionalIntegerParameter |
ConvertFilamentsToLabelsAlgorithm.getForcedLineThickness() |
OptionalIntegerParameter |
ConvertFilamentsToMaskAlgorithm.getForcedLineThickness() |
OptionalIntegerParameter |
ConvertFilamentsToRoiAlgorithm.getForcedLineThickness() |
OptionalIntegerParameter |
ConvertFilamentsToRoi3DAlgorithm.getForcedVertexRadius() |
OptionalIntegerParameter |
ConvertFilamentsToLabelsAlgorithm.getForcedVertexRadius() |
OptionalIntegerParameter |
ConvertFilamentsToMaskAlgorithm.getForcedVertexRadius() |
OptionalIntegerParameter |
ConvertFilamentsToRoiAlgorithm.getForcedVertexRadius() |
Quantity.LengthUnit |
ConvertFilamentsTo3DMeshAlgorithm.getMeshLengthUnit() |
String |
ConvertFilamentsTo3DMeshAlgorithm.getMeshNamePrefix() |
OptionalColorParameter |
ConvertFilamentsTo3DMeshAlgorithm.getOverrideEdgeColor() |
OptionalFloatParameter |
ConvertFilamentsTo3DMeshAlgorithm.getOverrideEdgeRadius() |
OptionalColorParameter |
ConvertFilamentsTo3DMeshAlgorithm.getOverrideVertexColor() |
OptionalFloatParameter |
ConvertFilamentsTo3DMeshAlgorithm.getOverrideVertexRadius() |
boolean |
ConvertFilamentsToRGBAlgorithm.isDrawOverReference() |
boolean |
ConvertFilamentsTo3DMeshAlgorithm.isForceMeshLengthUnit() |
boolean |
ConvertFilamentsToRoiAlgorithm.isIgnoreNon2DEdges() |
boolean |
ConvertFilamentsTo3DMeshAlgorithm.isPhysicalSizes() |
boolean |
ConvertFilamentsTo3DMeshAlgorithm.isSplitIntoConnectedComponents() |
boolean |
ConvertFilamentsToRoiAlgorithm.isThinLines() |
boolean |
ConvertFilamentsTo3DMeshAlgorithm.isWithEdges() |
boolean |
ConvertFilamentsToRoi3DAlgorithm.isWithEdges() |
boolean |
ConvertFilamentsToLabelsAlgorithm.isWithEdges() |
boolean |
ConvertFilamentsToMaskAlgorithm.isWithEdges() |
boolean |
ConvertFilamentsToRoiAlgorithm.isWithEdges() |
boolean |
ConvertFilamentsTo3DMeshAlgorithm.isWithVertices() |
boolean |
ConvertFilamentsToRoi3DAlgorithm.isWithVertices() |
boolean |
ConvertFilamentsToLabelsAlgorithm.isWithVertices() |
boolean |
ConvertFilamentsToMaskAlgorithm.isWithVertices() |
boolean |
ConvertFilamentsToRoiAlgorithm.isWithVertices() |
void |
ConvertFilamentsToRGBAlgorithm.setDrawOverReference(boolean drawOverReference) |
void |
ConvertFilamentsToRoi3DAlgorithm.setForcedLineThickness(OptionalIntegerParameter forcedLineThickness) |
void |
ConvertFilamentsToLabelsAlgorithm.setForcedLineThickness(OptionalIntegerParameter forcedLineThickness) |
void |
ConvertFilamentsToMaskAlgorithm.setForcedLineThickness(OptionalIntegerParameter forcedLineThickness) |
void |
ConvertFilamentsToRoiAlgorithm.setForcedLineThickness(OptionalIntegerParameter forcedLineThickness) |
void |
ConvertFilamentsToRoi3DAlgorithm.setForcedVertexRadius(OptionalIntegerParameter forcedVertexRadius) |
void |
ConvertFilamentsToLabelsAlgorithm.setForcedVertexRadius(OptionalIntegerParameter forcedVertexRadius) |
void |
ConvertFilamentsToMaskAlgorithm.setForcedVertexRadius(OptionalIntegerParameter forcedVertexRadius) |
void |
ConvertFilamentsToRoiAlgorithm.setForcedVertexRadius(OptionalIntegerParameter forcedVertexRadius) |
void |
ConvertFilamentsTo3DMeshAlgorithm.setForceMeshLengthUnit(boolean forceMeshLengthUnit) |
void |
ConvertFilamentsToRoiAlgorithm.setIgnoreNon2DEdges(boolean ignoreNon2DEdges) |
void |
ConvertFilamentsTo3DMeshAlgorithm.setMeshLengthUnit(Quantity.LengthUnit meshLengthUnit) |
void |
ConvertFilamentsTo3DMeshAlgorithm.setMeshNamePrefix(String meshNamePrefix) |
void |
ConvertFilamentsTo3DMeshAlgorithm.setOverrideEdgeColor(OptionalColorParameter overrideEdgeColor) |
void |
ConvertFilamentsTo3DMeshAlgorithm.setOverrideEdgeRadius(OptionalFloatParameter overrideEdgeRadius) |
void |
ConvertFilamentsTo3DMeshAlgorithm.setOverrideVertexColor(OptionalColorParameter overrideVertexColor) |
void |
ConvertFilamentsTo3DMeshAlgorithm.setOverrideVertexRadius(OptionalFloatParameter overrideVertexRadius) |
void |
ConvertFilamentsTo3DMeshAlgorithm.setPhysicalSizes(boolean physicalSizes) |
void |
ConvertFilamentsTo3DMeshAlgorithm.setSplitIntoConnectedComponents(boolean splitIntoConnectedComponents) |
void |
ConvertFilamentsToRoiAlgorithm.setThinLines(boolean thinLines) |
void |
ConvertFilamentsTo3DMeshAlgorithm.setWithEdges(boolean withEdges) |
void |
ConvertFilamentsToRoi3DAlgorithm.setWithEdges(boolean withEdges) |
void |
ConvertFilamentsToLabelsAlgorithm.setWithEdges(boolean withEdges) |
void |
ConvertFilamentsToMaskAlgorithm.setWithEdges(boolean withEdges) |
void |
ConvertFilamentsToRoiAlgorithm.setWithEdges(boolean withEdges) |
void |
ConvertFilamentsTo3DMeshAlgorithm.setWithVertices(boolean withVertices) |
void |
ConvertFilamentsToRoi3DAlgorithm.setWithVertices(boolean withVertices) |
void |
ConvertFilamentsToLabelsAlgorithm.setWithVertices(boolean withVertices) |
void |
ConvertFilamentsToMaskAlgorithm.setWithVertices(boolean withVertices) |
void |
ConvertFilamentsToRoiAlgorithm.setWithVertices(boolean withVertices) |
Modifier and Type | Method and Description |
---|---|
double |
RemoveBorderFilaments.getBorderDistance() |
JIPipeExpressionParameter |
FilterFilamentsByProperties.getFilter() |
JIPipeExpressionParameter |
FilterFilamentVerticesByProperties.getFilter() |
JIPipeExpressionParameter |
FilterFilamentEdgesByProperties.getFilter() |
boolean |
RemoveBorderFilaments.isRemoveInX() |
boolean |
RemoveBorderFilaments.isRemoveInY() |
boolean |
RemoveBorderFilaments.isRemoveInZ() |
boolean |
RemoveBorderFilaments.isUseThickness() |
void |
RemoveBorderFilaments.setBorderDistance(double borderDistance) |
void |
FilterFilamentsByProperties.setFilter(JIPipeExpressionParameter filter) |
void |
FilterFilamentVerticesByProperties.setFilter(JIPipeExpressionParameter filter) |
void |
FilterFilamentEdgesByProperties.setFilter(JIPipeExpressionParameter filter) |
void |
RemoveBorderFilaments.setRemoveInX(boolean removeInX) |
void |
RemoveBorderFilaments.setRemoveInY(boolean removeInY) |
void |
RemoveBorderFilaments.setRemoveInZ(boolean removeInZ) |
void |
RemoveBorderFilaments.setUseThickness(boolean useThickness) |
Modifier and Type | Method and Description |
---|---|
AnalyzeSkeleton2D3DAlgorithm.CycleRemovalMethod |
SkeletonToSimplifiedFilamentsFijiAlgorithm.getPruneCyclesMethod() |
AnalyzeSkeleton2D3DAlgorithm.EndRemovalMethod |
SkeletonToSimplifiedFilamentsFijiAlgorithm.getPruneEndsMethod() |
boolean |
SkeletonToFilaments2DAlgorithm.isForce2D() |
void |
SkeletonToFilaments2DAlgorithm.setForce2D(boolean force2D) |
void |
SkeletonToSimplifiedFilamentsFijiAlgorithm.setPruneCyclesMethod(AnalyzeSkeleton2D3DAlgorithm.CycleRemovalMethod pruneCyclesMethod) |
void |
SkeletonToSimplifiedFilamentsFijiAlgorithm.setPruneEndsMethod(AnalyzeSkeleton2D3DAlgorithm.EndRemovalMethod pruneEndsMethod) |
Modifier and Type | Method and Description |
---|---|
JIPipeExpressionParameter |
GrowEndVerticesAlgorithm.getAttitudeExpression() |
JIPipeExpressionParameter |
GrowEndVerticesAlgorithm.getAzimuthExpression() |
JIPipeExpressionParameter |
ChangeFilamentVertexPropertiesAlgorithm.getCentroidC() |
JIPipeExpressionParameter |
ChangeFilamentVertexPropertiesAlgorithm.getCentroidT() |
JIPipeExpressionParameter |
ChangeFilamentVertexPropertiesAlgorithm.getCentroidX() |
JIPipeExpressionParameter |
ChangeFilamentVertexPropertiesAlgorithm.getCentroidY() |
JIPipeExpressionParameter |
ChangeFilamentVertexPropertiesAlgorithm.getCentroidZ() |
JIPipeExpressionParameter |
ChangeFilamentEdgePropertiesAlgorithm.getColor() |
JIPipeExpressionParameter |
GrowEndVerticesAlgorithm.getDistanceExpression() |
EdgeMaskParameter |
ChangeFilamentEdgePropertiesAlgorithm.getEdgeMask() |
JIPipeExpressionParameter |
ConnectVerticesAlgorithm.getFilterFunction() |
int |
GrowEndVerticesAlgorithm.getIterations() |
int |
ErodeEndVerticesAlgorithm.getIterations() |
OptionalIntegerParameter |
ConnectVerticesAlgorithm.getLimitConnections() |
String |
SetVertexMetadataFromImageAlgorithm.getMetadataKey() |
OptionalColorParameter |
ConnectVerticesAlgorithm.getNewEdgeColor() |
JIPipeExpressionParameter |
ChangeFilamentVertexPropertiesAlgorithm.getPhysicalSizeX() |
JIPipeExpressionParameter |
ChangeFilamentVertexPropertiesAlgorithm.getPhysicalSizeY() |
JIPipeExpressionParameter |
ChangeFilamentVertexPropertiesAlgorithm.getPhysicalSizeZ() |
JIPipeExpressionParameter |
ChangeFilamentVertexPropertiesAlgorithm.getRadius() |
JIPipeExpressionParameter |
ConnectVerticesAlgorithm.getScoringFunction() |
JIPipeExpressionParameter |
ChangeFilamentVertexPropertiesAlgorithm.getValue() |
VertexMaskParameter |
GrowEndVerticesAlgorithm.getVertexMask() |
VertexMaskParameter |
ChangeFilamentVertexPropertiesAlgorithm.getVertexMask() |
VertexMaskParameter |
ErodeEndVerticesAlgorithm.getVertexMask() |
VertexMaskParameter |
ConnectVerticesAlgorithm.getVertexMask() |
boolean |
ConnectVerticesAlgorithm.isConnectAcrossC() |
boolean |
ConnectVerticesAlgorithm.isConnectAcrossT() |
boolean |
ConnectVerticesAlgorithm.isEnable3D() |
boolean |
ConnectVerticesAlgorithm.isEnforceEdgesWithinMask() |
boolean |
ConnectVerticesAlgorithm.isRequireDirection() |
void |
GrowEndVerticesAlgorithm.setAttitudeExpression(JIPipeExpressionParameter attitudeExpression) |
void |
GrowEndVerticesAlgorithm.setAzimuthExpression(JIPipeExpressionParameter azimuthExpression) |
void |
ChangeFilamentVertexPropertiesAlgorithm.setCentroidC(JIPipeExpressionParameter centroidC) |
void |
ChangeFilamentVertexPropertiesAlgorithm.setCentroidT(JIPipeExpressionParameter centroidT) |
void |
ChangeFilamentVertexPropertiesAlgorithm.setCentroidX(JIPipeExpressionParameter centroidX) |
void |
ChangeFilamentVertexPropertiesAlgorithm.setCentroidY(JIPipeExpressionParameter centroidY) |
void |
ChangeFilamentVertexPropertiesAlgorithm.setCentroidZ(JIPipeExpressionParameter centroidZ) |
void |
ChangeFilamentEdgePropertiesAlgorithm.setColor(JIPipeExpressionParameter color) |
void |
ConnectVerticesAlgorithm.setConnectAcrossC(boolean connectAcrossC) |
void |
ConnectVerticesAlgorithm.setConnectAcrossT(boolean connectAcrossT) |
void |
GrowEndVerticesAlgorithm.setDistanceExpression(JIPipeExpressionParameter distanceExpression) |
void |
ConnectVerticesAlgorithm.setEnable3D(boolean enable3D) |
void |
ConnectVerticesAlgorithm.setEnforceEdgesWithinMask(boolean enforceEdgesWithinMask) |
void |
ConnectVerticesAlgorithm.setFilterFunction(JIPipeExpressionParameter filterFunction) |
void |
GrowEndVerticesAlgorithm.setIterations(int iterations) |
void |
ErodeEndVerticesAlgorithm.setIterations(int iterations) |
void |
ConnectVerticesAlgorithm.setLimitConnections(OptionalIntegerParameter limitConnections) |
void |
SetVertexMetadataFromImageAlgorithm.setMetadataKey(String metadataKey) |
void |
ConnectVerticesAlgorithm.setNewEdgeColor(OptionalColorParameter newEdgeColor) |
void |
ChangeFilamentVertexPropertiesAlgorithm.setPhysicalSizeX(JIPipeExpressionParameter physicalSizeX) |
void |
ChangeFilamentVertexPropertiesAlgorithm.setPhysicalSizeY(JIPipeExpressionParameter physicalSizeY) |
void |
ChangeFilamentVertexPropertiesAlgorithm.setPhysicalSizeZ(JIPipeExpressionParameter physicalSizeZ) |
void |
ChangeFilamentVertexPropertiesAlgorithm.setRadius(JIPipeExpressionParameter radius) |
void |
ConnectVerticesAlgorithm.setRequireDirection(boolean requireDirection) |
void |
ConnectVerticesAlgorithm.setScoringFunction(JIPipeExpressionParameter scoringFunction) |
void |
ChangeFilamentVertexPropertiesAlgorithm.setValue(JIPipeExpressionParameter value) |
Modifier and Type | Method and Description |
---|---|
double |
SmoothFilamentsAlgorithm.getFactorX() |
double |
SmoothFilamentsAlgorithm.getFactorY() |
double |
SmoothFilamentsAlgorithm.getFactorZ() |
JIPipeExpressionParameter |
FixOverlapsNonBranchingAlgorithm.getFilterFunction() |
JIPipeExpressionParameter |
SmoothFilamentsAlgorithm.getLocationMergingFunction() |
OptionalColorParameter |
FixOverlapsNonBranchingAlgorithm.getNewEdgeColor() |
JIPipeExpressionParameter |
FixOverlapsNonBranchingAlgorithm.getScoringFunction() |
boolean |
FixOverlapsNonBranchingAlgorithm.isConnectAcrossC() |
boolean |
FixOverlapsNonBranchingAlgorithm.isConnectAcrossT() |
boolean |
FixOverlapsNonBranchingAlgorithm.isEnable3D() |
boolean |
FixOverlapsNonBranchingAlgorithm.isEnforceEdgesWithinMask() |
boolean |
SmoothFilamentsAlgorithm.isEnforceSameComponent() |
boolean |
FixOverlapsNonBranchingAlgorithm.isEnforceSameComponent() |
boolean |
FixOverlapsNonBranchingAlgorithm.isEnsureNoPathExists() |
boolean |
FixOverlapsNonBranchingAlgorithm.isExcludeExistingEndpoints() |
boolean |
RemoveDuplicateVerticesAlgorithm.isOnlySameComponent() |
void |
FixOverlapsNonBranchingAlgorithm.setConnectAcrossC(boolean connectAcrossC) |
void |
FixOverlapsNonBranchingAlgorithm.setConnectAcrossT(boolean connectAcrossT) |
void |
FixOverlapsNonBranchingAlgorithm.setEnable3D(boolean enable3D) |
void |
FixOverlapsNonBranchingAlgorithm.setEnforceEdgesWithinMask(boolean enforceEdgesWithinMask) |
void |
SmoothFilamentsAlgorithm.setEnforceSameComponent(boolean enforceSameComponent) |
void |
FixOverlapsNonBranchingAlgorithm.setEnforceSameComponent(boolean enforceSameComponent) |
void |
FixOverlapsNonBranchingAlgorithm.setEnsureNoPathExists(boolean ensureNoPathExists) |
void |
FixOverlapsNonBranchingAlgorithm.setExcludeExistingEndpoints(boolean excludeExistingEndpoints) |
void |
SmoothFilamentsAlgorithm.setFactorX(double factorX) |
void |
SmoothFilamentsAlgorithm.setFactorY(double factorY) |
void |
SmoothFilamentsAlgorithm.setFactorZ(double factorZ) |
void |
FixOverlapsNonBranchingAlgorithm.setFilterFunction(JIPipeExpressionParameter filterFunction) |
void |
SmoothFilamentsAlgorithm.setLocationMergingFunction(JIPipeExpressionParameter locationMergingFunction) |
void |
FixOverlapsNonBranchingAlgorithm.setNewEdgeColor(OptionalColorParameter newEdgeColor) |
void |
RemoveDuplicateVerticesAlgorithm.setOnlySameComponent(boolean onlySameComponent) |
void |
FixOverlapsNonBranchingAlgorithm.setScoringFunction(JIPipeExpressionParameter scoringFunction) |
Modifier and Type | Method and Description |
---|---|
OptionalTextAnnotationNameParameter |
SplitFilamentsIntoConnectedComponentsAlgorithm.getComponentIdAnnotation() |
void |
SplitFilamentsIntoConnectedComponentsAlgorithm.setComponentIdAnnotation(OptionalTextAnnotationNameParameter componentIdAnnotation) |
Modifier and Type | Method and Description |
---|---|
JIPipeExpressionParameter |
EdgeMaskParameter.getFilter() |
JIPipeExpressionParameter |
VertexMaskParameter.getFilter() |
void |
EdgeMaskParameter.setFilter(JIPipeExpressionParameter filter) |
void |
VertexMaskParameter.setFilter(JIPipeExpressionParameter filter) |
Modifier and Type | Method and Description |
---|---|
FilamentsDrawer |
ImageViewerUIFilamentDisplaySettings.getFilamentDrawer() |
boolean |
ImageViewerUIFilamentDisplaySettings.isShowFilaments() |
void |
ImageViewerUIFilamentDisplaySettings.setShowFilaments(boolean showFilaments) |
Modifier and Type | Method and Description |
---|---|
ImageBlendMode |
FilamentsDrawer.getBlendMode() |
double |
FilamentsDrawer.getOpacity() |
OptionalColorParameter |
FilamentsDrawer.getOverrideEdgeColor() |
OptionalIntegerParameter |
FilamentsDrawer.getOverrideEdgeThickness() |
OptionalColorParameter |
FilamentsDrawer.getOverrideVertexColor() |
OptionalIntegerParameter |
FilamentsDrawer.getOverrideVertexRadius() |
boolean |
FilamentsDrawer.isDrawEdges() |
boolean |
FilamentsDrawer.isDrawVertices() |
boolean |
FilamentsDrawer.isHollowVertices() |
boolean |
FilamentsDrawer.isIgnoreC() |
boolean |
FilamentsDrawer.isIgnoreT() |
boolean |
FilamentsDrawer.isIgnoreZ() |
void |
FilamentsDrawer.setBlendMode(ImageBlendMode blendMode) |
void |
FilamentsDrawer.setDrawEdges(boolean drawEdges) |
void |
FilamentsDrawer.setDrawVertices(boolean drawVertices) |
void |
FilamentsDrawer.setHollowVertices(boolean hollowVertices) |
void |
FilamentsDrawer.setIgnoreC(boolean ignoreC) |
void |
FilamentsDrawer.setIgnoreT(boolean ignoreT) |
void |
FilamentsDrawer.setIgnoreZ(boolean ignoreZ) |
void |
FilamentsDrawer.setOpacity(double opacity) |
void |
FilamentsDrawer.setOverrideEdgeColor(OptionalColorParameter overrideEdgeColor) |
void |
FilamentsDrawer.setOverrideEdgeThickness(OptionalIntegerParameter overrideEdgeThickness) |
void |
FilamentsDrawer.setOverrideVertexColor(OptionalColorParameter overrideVertexColor) |
void |
FilamentsDrawer.setOverrideVertexRadius(OptionalIntegerParameter overrideVertexRadius) |
Modifier and Type | Method and Description |
---|---|
OptionalColorParameter |
MultiTemplateMatchingAlgorithm.getAssembleTemplatesBackground() |
OptionalDataInfoRefParameter |
MultiTemplateMatchingAlgorithm.getAssembleTemplatesOutput() |
int |
MultiTemplateMatchingAlgorithm.getExpectedNumberOfObjects() |
double |
MultiTemplateMatchingAlgorithm.getMultiObjectMaximumBoundingBoxOverlap() |
double |
MultiTemplateMatchingAlgorithm.getMultiObjectScoreThreshold() |
IntegerRange |
MultiTemplateMatchingAlgorithm.getRotateTemplate() |
TemplateMatchingMethod |
MultiTemplateMatchingAlgorithm.getTemplateMatchingMethod() |
boolean |
MultiTemplateMatchingAlgorithm.isAssembleTemplates() |
boolean |
MultiTemplateMatchingAlgorithm.isFlipTemplateHorizontally() |
boolean |
MultiTemplateMatchingAlgorithm.isFlipTemplateVertically() |
boolean |
MultiTemplateMatchingAlgorithm.isOutputMatchedTemplates() |
boolean |
MultiTemplateMatchingAlgorithm.isRestrictToROI() |
boolean |
MultiTemplateMatchingAlgorithm.isWithNonMaximaSuppression() |
void |
MultiTemplateMatchingAlgorithm.setAssembleTemplates(boolean assembleTemplates) |
void |
MultiTemplateMatchingAlgorithm.setAssembleTemplatesBackground(OptionalColorParameter assembleTemplatesBackground) |
void |
MultiTemplateMatchingAlgorithm.setAssembleTemplatesOutput(OptionalDataInfoRefParameter assembleTemplatesOutput) |
boolean |
MultiTemplateMatchingAlgorithm.setExpectedNumberOfObjects(int expectedNumberOfObjects) |
void |
MultiTemplateMatchingAlgorithm.setFlipTemplateHorizontally(boolean flipTemplateHorizontally) |
void |
MultiTemplateMatchingAlgorithm.setFlipTemplateVertically(boolean flipTemplateVertically) |
boolean |
MultiTemplateMatchingAlgorithm.setMultiObjectMaximumBoundingBoxOverlap(double multiObjectMaximumBoundingBoxOverlap) |
boolean |
MultiTemplateMatchingAlgorithm.setMultiObjectScoreThreshold(double multiObjectScoreThreshold) |
void |
MultiTemplateMatchingAlgorithm.setOutputMatchedTemplates(boolean outputMatchedTemplates) |
void |
MultiTemplateMatchingAlgorithm.setRestrictToROI(boolean restrictToROI) |
void |
MultiTemplateMatchingAlgorithm.setRotateTemplate(IntegerRange rotateTemplate) |
void |
MultiTemplateMatchingAlgorithm.setTemplateMatchingMethod(TemplateMatchingMethod templateMatchingMethod) |
void |
MultiTemplateMatchingAlgorithm.setWithNonMaximaSuppression(boolean withNonMaximaSuppression) |
Modifier and Type | Method and Description |
---|---|
JIPipeDynamicParameterCollection |
CreateSpotDetectorNode.getParameters() |
JIPipeDynamicParameterCollection |
CreateSpotTrackerNode.getParameters() |
Modifier and Type | Method and Description |
---|---|
NamedTextAnnotationGeneratorExpression.List |
SplitSpotsNode.getAnnotationGenerator() |
JIPipeExpressionParameter |
SpotFilterNode.getFilter() |
double |
SpotsToRGBNode.getMagnification() |
SpotDrawer |
SpotsToRGBNode.getSpotDrawer() |
void |
SplitSpotsNode.setAnnotationGenerator(NamedTextAnnotationGeneratorExpression.List annotationGenerator) |
void |
SpotFilterNode.setFilter(JIPipeExpressionParameter filter) |
void |
SpotsToRGBNode.setMagnification(double magnification) |
Modifier and Type | Method and Description |
---|---|
NamedTextAnnotationGeneratorExpression.List |
SplitTracksNode.getAnnotationGenerator() |
JIPipeExpressionParameter |
TrackFilterNode.getFilter() |
double |
TracksToRGBNode.getMagnification() |
int |
FollowSpotsPerTrackNode.getMinHeight() |
int |
FollowSpotsPerTrackNode.getMinWidth() |
TrackDrawer |
TracksToRGBNode.getTrackDrawer() |
OptionalTextAnnotationNameParameter |
FollowSpotsPerTrackNode.getTrackIDAnnotation() |
boolean |
FollowSpotsPerTrackNode.isCropT() |
boolean |
FollowSpotsPerTrackNode.isCropXY() |
boolean |
FollowSpotsPerTrackNode.isCropZ() |
void |
SplitTracksNode.setAnnotationGenerator(NamedTextAnnotationGeneratorExpression.List annotationGenerator) |
void |
FollowSpotsPerTrackNode.setCropT(boolean cropT) |
void |
FollowSpotsPerTrackNode.setCropXY(boolean cropXY) |
void |
FollowSpotsPerTrackNode.setCropZ(boolean cropZ) |
void |
TrackFilterNode.setFilter(JIPipeExpressionParameter filter) |
void |
TracksToRGBNode.setMagnification(double magnification) |
void |
FollowSpotsPerTrackNode.setMinHeight(int minHeight) |
void |
FollowSpotsPerTrackNode.setMinWidth(int minWidth) |
void |
FollowSpotsPerTrackNode.setTrackIDAnnotation(OptionalTextAnnotationNameParameter trackIDAnnotation) |
Modifier and Type | Method and Description |
---|---|
SpotFeature |
SpotFeatureFilterParameter.getFeature() |
TrackFeature |
TrackFeatureFilterParameter.getFeature() |
SpotFeature |
SpotFeaturePenaltyParameter.getFeature() |
double |
SpotFeaturePenaltyParameter.getPenalty() |
double |
SpotFeatureFilterParameter.getValue() |
double |
TrackFeatureFilterParameter.getValue() |
boolean |
SpotFeatureFilterParameter.isAbove() |
boolean |
TrackFeatureFilterParameter.isAbove() |
void |
SpotFeatureFilterParameter.setAbove(boolean above) |
void |
TrackFeatureFilterParameter.setAbove(boolean above) |
void |
SpotFeatureFilterParameter.setFeature(SpotFeature feature) |
void |
SpotFeaturePenaltyParameter.setFeature(SpotFeature feature) |
void |
TrackFeatureFilterParameter.setFeature(TrackFeature feature) |
void |
SpotFeaturePenaltyParameter.setPenalty(double penalty) |
void |
SpotFeatureFilterParameter.setValue(double value) |
void |
TrackFeatureFilterParameter.setValue(double value) |
Modifier and Type | Method and Description |
---|---|
SpotDrawer |
ImageViewerUISpotsDisplaySettings.getSpotDrawer() |
TrackDrawer |
ImageViewerUITracksDisplaySettings.getTrackDrawer() |
boolean |
ImageViewerUISpotsDisplaySettings.isShowSpots() |
boolean |
ImageViewerUITracksDisplaySettings.isShowTracks() |
void |
ImageViewerUISpotsDisplaySettings.setShowSpots(boolean showSpots) |
void |
ImageViewerUITracksDisplaySettings.setShowTracks(boolean showTracks) |
Modifier and Type | Method and Description |
---|---|
SpotFeature |
SpotDrawer.LabelSettings.getDrawnFeature() |
int |
TrackDrawer.getFadeTrackRange() |
OptionalColorParameter |
DrawerLabelSettings.getLabelBackground() |
Color |
DrawerLabelSettings.getLabelForeground() |
SpotDrawer.LabelSettings |
SpotDrawer.getLabelSettings() |
int |
DrawerLabelSettings.getLabelSize() |
Color |
TrackDrawer.getStrokeColor() |
Color |
SpotDrawer.getStrokeColor() |
EdgeFeature |
TrackDrawer.getStrokeColorEdgeFeature() |
SpotFeature |
SpotDrawer.getStrokeColorFeature() |
TrackDrawer.StrokeColorMode |
TrackDrawer.getStrokeColorMode() |
TrackFeature |
TrackDrawer.getStrokeColorTrackFeature() |
int |
TrackDrawer.getStrokeWidth() |
int |
SpotDrawer.getStrokeWidth() |
DisplaySettings.TrackDisplayMode |
TrackDrawer.getTrackDisplayMode() |
boolean |
DrawerLabelSettings.isDrawLabels() |
boolean |
SpotDrawer.LabelSettings.isDrawName() |
boolean |
SpotDrawer.isFillSpots() |
boolean |
SpotDrawer.isUniformStrokeColor() |
void |
DrawerLabelSettings.setDrawLabels(boolean drawLabels) |
void |
SpotDrawer.LabelSettings.setDrawName(boolean drawName) |
void |
SpotDrawer.LabelSettings.setDrawnFeature(SpotFeature drawnFeature) |
void |
TrackDrawer.setFadeTrackRange(int fadeTrackRange) |
void |
SpotDrawer.setFillSpots(boolean fillSpots) |
void |
DrawerLabelSettings.setLabelBackground(OptionalColorParameter labelBackground) |
void |
DrawerLabelSettings.setLabelForeground(Color labelForeground) |
boolean |
DrawerLabelSettings.setLabelSize(int labelSize) |
void |
TrackDrawer.setStrokeColor(Color strokeColor) |
void |
SpotDrawer.setStrokeColor(Color strokeColor) |
void |
TrackDrawer.setStrokeColorEdgeFeature(EdgeFeature strokeColorEdgeFeature) |
void |
SpotDrawer.setStrokeColorFeature(SpotFeature strokeColorFeature) |
void |
TrackDrawer.setStrokeColorMode(TrackDrawer.StrokeColorMode strokeColorMode) |
void |
TrackDrawer.setStrokeColorTrackFeature(TrackFeature strokeColorTrackFeature) |
void |
TrackDrawer.setStrokeWidth(int strokeWidth) |
void |
SpotDrawer.setStrokeWidth(int strokeWidth) |
void |
TrackDrawer.setTrackDisplayMode(DisplaySettings.TrackDisplayMode trackDisplayMode) |
void |
SpotDrawer.setUniformStrokeColor(boolean uniformStrokeColor) |
Modifier and Type | Method and Description |
---|---|
InputSlotMapParameterCollection |
WekaTrainingROI3DAlgorithm.getClassAssignment() |
InputSlotMapParameterCollection |
WekaTrainingROI2DAlgorithm.getClassAssignment() |
WekaClassifierSettings |
WekaTrainingROI3DAlgorithm.getClassifierSettings() |
WekaClassifierSettings |
WekaTrainingROI2DAlgorithm.getClassifierSettings() |
WekaClassifierSettings |
WekaTrainingLabels2DAlgorithm.getClassifierSettings() |
WekaClassifierSettings |
WekaTrainingLabels2DAlgorithm2.getClassifierSettings() |
WekaClassifierSettings |
WekaTrainingMask2DAlgorithm2.getClassifierSettings() |
WekaClassifierSettings |
WekaTrainingMask2DAlgorithm.getClassifierSettings() |
WekaFeature3DSettings |
WekaTrainingROI3DAlgorithm.getFeatureSettings() |
WekaFeature2DSettings |
WekaTrainingROI2DAlgorithm.getFeatureSettings() |
WekaFeature2DSettings |
WekaTrainingLabels2DAlgorithm.getFeatureSettings() |
WekaFeature2DSettings |
WekaTrainingLabels2DAlgorithm2.getFeatureSettings() |
WekaFeature2DSettings |
WekaTrainingMask2DAlgorithm2.getFeatureSettings() |
WekaFeature2DSettings |
WekaTrainingMask2DAlgorithm.getFeatureSettings() |
DataAnnotationQueryExpression |
WekaTrainingLabels2DAlgorithm2.getLabelDataAnnotation() |
DataAnnotationQueryExpression |
WekaTrainingMask2DAlgorithm2.getLabelDataAnnotation() |
OptionalIntegerParameter |
WekaClassification2DAlgorithm.getNumThreads() |
OptionalIntegerParameter |
WekaClassification3DAlgorithm.getNumThreads() |
WekaTiling3DSettings |
WekaClassification3DAlgorithm.getTilingParameters() |
WekaTiling2DSettings |
WekaClassification2DAlgorithm.getTilingSettings() |
boolean |
WekaClassification2DAlgorithm.isOutputProbabilityMaps() |
boolean |
WekaClassification3DAlgorithm.isOutputProbabilityMaps() |
boolean |
ImportWekaModelFromFileAlgorithm.isProcessing3D() |
void |
WekaTrainingLabels2DAlgorithm2.setLabelDataAnnotation(DataAnnotationQueryExpression labelDataAnnotation) |
void |
WekaTrainingMask2DAlgorithm2.setLabelDataAnnotation(DataAnnotationQueryExpression labelDataAnnotation) |
void |
WekaClassification2DAlgorithm.setNumThreads(OptionalIntegerParameter numThreads) |
void |
WekaClassification3DAlgorithm.setNumThreads(OptionalIntegerParameter numThreads) |
void |
WekaClassification2DAlgorithm.setOutputProbabilityMaps(boolean outputProbabilityMaps) |
void |
WekaClassification3DAlgorithm.setOutputProbabilityMaps(boolean outputProbabilityMaps) |
void |
ImportWekaModelFromFileAlgorithm.setProcessing3D(boolean processing3D) |
Modifier and Type | Method and Description |
---|---|
WekaClassifierParameter |
WekaClassifierSettings.getClassifier() |
boolean |
WekaClassifierSettings.isBalanceClasses() |
void |
WekaClassifierSettings.setBalanceClasses(boolean balanceClasses) |
void |
WekaClassifierSettings.setClassifier(WekaClassifierParameter classifier) |
Modifier and Type | Method and Description |
---|---|
BorderMode |
WekaTiling2DSettings.getBorderMode() |
float |
WekaFeature2DSettings.getMaxSigma() |
float |
WekaFeature3DSettings.getMaxSigma() |
int |
WekaFeature2DSettings.getMembranePatchSize() |
int |
WekaFeature3DSettings.getMembranePatchSize() |
int |
WekaFeature2DSettings.getMembraneSize() |
int |
WekaFeature3DSettings.getMembraneSize() |
float |
WekaFeature2DSettings.getMinSigma() |
float |
WekaFeature3DSettings.getMinSigma() |
int |
WekaTiling2DSettings.getOverlapX() |
int |
WekaTiling2DSettings.getOverlapY() |
int |
WekaTiling2DSettings.getTileSizeX() |
int |
WekaTiling3DSettings.getTileSizeX() |
int |
WekaTiling2DSettings.getTileSizeY() |
int |
WekaTiling3DSettings.getTileSizeY() |
int |
WekaTiling3DSettings.getTileSizeZ() |
WekaFeatureSet2D |
WekaFeature2DSettings.getTrainingFeatures() |
WekaFeatureSet3D |
WekaFeature3DSettings.getTrainingFeatures() |
boolean |
WekaTiling2DSettings.isApplyTiling() |
boolean |
WekaTiling3DSettings.isApplyTiling() |
boolean |
WekaFeature2DSettings.isUseNeighbors() |
boolean |
WekaFeature3DSettings.isUseNeighbors() |
boolean |
WekaTiling2DSettings.isUseWekaNativeTiling() |
void |
WekaTiling2DSettings.setApplyTiling(boolean applyTiling) |
void |
WekaTiling3DSettings.setApplyTiling(boolean applyTiling) |
void |
WekaTiling2DSettings.setBorderMode(BorderMode borderMode) |
void |
WekaFeature2DSettings.setMaxSigma(float maxSigma) |
void |
WekaFeature3DSettings.setMaxSigma(float maxSigma) |
void |
WekaFeature2DSettings.setMembranePatchSize(int membranePatchSize) |
void |
WekaFeature3DSettings.setMembranePatchSize(int membranePatchSize) |
void |
WekaFeature2DSettings.setMembraneSize(int membraneSize) |
void |
WekaFeature3DSettings.setMembraneSize(int membraneSize) |
void |
WekaFeature2DSettings.setMinSigma(float minSigma) |
void |
WekaFeature3DSettings.setMinSigma(float minSigma) |
boolean |
WekaTiling2DSettings.setOverlapX(int overlapX) |
boolean |
WekaTiling2DSettings.setOverlapY(int overlapY) |
void |
WekaTiling2DSettings.setTileSizeX(int tileSizeX) |
void |
WekaTiling3DSettings.setTileSizeX(int tileSizeX) |
void |
WekaTiling2DSettings.setTileSizeY(int tileSizeY) |
void |
WekaTiling3DSettings.setTileSizeY(int tileSizeY) |
void |
WekaTiling3DSettings.setTileSizeZ(int tileSizeZ) |
void |
WekaFeature2DSettings.setTrainingFeatures(WekaFeatureSet2D trainingFeatures) |
void |
WekaFeature3DSettings.setTrainingFeatures(WekaFeatureSet3D trainingFeatures) |
void |
WekaFeature2DSettings.setUseNeighbors(boolean useNeighbors) |
void |
WekaFeature3DSettings.setUseNeighbors(boolean useNeighbors) |
void |
WekaTiling2DSettings.setUseWekaNativeTiling(boolean useWekaNativeTiling) |
Modifier and Type | Method and Description |
---|---|
StringList |
IlastikSettings.getEasyInstallerRepositories() |
ProcessEnvironment |
IlastikSettings.getEnvironment() |
int |
IlastikSettings.getMaxMemory() |
int |
IlastikSettings.getMaxThreads() |
void |
IlastikSettings.setEasyInstallerRepositories(StringList easyInstallerRepositories) |
void |
IlastikSettings.setEnvironment(ProcessEnvironment environment) |
void |
IlastikSettings.setMaxMemory(int maxMemory) |
void |
IlastikSettings.setMaxThreads(int maxThreads) |
Modifier and Type | Method and Description |
---|---|
String |
ImportIlastikHDF5ImageAlgorithm.getAxes() |
String |
ExportIlastikHDF5ImageAlgorithm.getAxes() |
CalibrationParameters |
ImportIlastikHDF5ImageAlgorithm.getCalibrationParameters() |
JIPipeExpressionParameter |
ImportIlastikHDF5ImageAlgorithm.getHdf5Path() |
JIPipeExpressionParameter |
ExportIlastikHDF5ImageAlgorithm.getHdf5Path() |
IlastikPredictionMapsObjectClassificationAlgorithm.OutputParameters |
IlastikPredictionMapsObjectClassificationAlgorithm.getOutputParameters() |
IlastikPixelClassificationAlgorithm.OutputParameters |
IlastikPixelClassificationAlgorithm.getOutputParameters() |
IlastikAutoContextAlgorithm.OutputParameters |
IlastikAutoContextAlgorithm.getOutputParameters() |
IlastikObjectClassificationAlgorithm.OutputParameters |
IlastikObjectClassificationAlgorithm.getOutputParameters() |
IlastikSegmentationImageObjectClassificationAlgorithm.OutputParameters |
IlastikSegmentationImageObjectClassificationAlgorithm.getOutputParameters() |
OptionalProcessEnvironment |
IlastikPredictionMapsObjectClassificationAlgorithm.getOverrideEnvironment() |
OptionalProcessEnvironment |
IlastikPixelClassificationAlgorithm.getOverrideEnvironment() |
OptionalProcessEnvironment |
IlastikAutoContextAlgorithm.getOverrideEnvironment() |
OptionalProcessEnvironment |
IlastikObjectClassificationAlgorithm.getOverrideEnvironment() |
OptionalProcessEnvironment |
IlastikSegmentationImageObjectClassificationAlgorithm.getOverrideEnvironment() |
DataAnnotationQueryExpression |
IlastikPredictionMapsObjectClassificationAlgorithm.getPredictionMapsDataAnnotation() |
IlastikProjectValidationMode |
IlastikPredictionMapsObjectClassificationAlgorithm.getProjectValidationMode() |
IlastikProjectValidationMode |
IlastikPixelClassificationAlgorithm.getProjectValidationMode() |
IlastikProjectValidationMode |
IlastikAutoContextAlgorithm.getProjectValidationMode() |
IlastikProjectValidationMode |
IlastikObjectClassificationAlgorithm.getProjectValidationMode() |
IlastikProjectValidationMode |
IlastikSegmentationImageObjectClassificationAlgorithm.getProjectValidationMode() |
DataAnnotationQueryExpression |
IlastikSegmentationImageObjectClassificationAlgorithm.getSegmentationImageDataAnnotation() |
boolean |
IlastikPredictionMapsObjectClassificationAlgorithm.isCleanUpAfterwards() |
boolean |
IlastikPixelClassificationAlgorithm.isCleanUpAfterwards() |
boolean |
IlastikAutoContextAlgorithm.isCleanUpAfterwards() |
boolean |
IlastikObjectClassificationAlgorithm.isCleanUpAfterwards() |
boolean |
IlastikSegmentationImageObjectClassificationAlgorithm.isCleanUpAfterwards() |
boolean |
IlastikPredictionMapsObjectClassificationAlgorithm.OutputParameters.isOutputBlockwiseObjectPredictions() |
boolean |
IlastikObjectClassificationAlgorithm.OutputParameters.isOutputBlockwiseObjectPredictions() |
boolean |
IlastikSegmentationImageObjectClassificationAlgorithm.OutputParameters.isOutputBlockwiseObjectPredictions() |
boolean |
IlastikPredictionMapsObjectClassificationAlgorithm.OutputParameters.isOutputBlockwiseObjectProbabilities() |
boolean |
IlastikObjectClassificationAlgorithm.OutputParameters.isOutputBlockwiseObjectProbabilities() |
boolean |
IlastikSegmentationImageObjectClassificationAlgorithm.OutputParameters.isOutputBlockwiseObjectProbabilities() |
boolean |
IlastikPredictionMapsObjectClassificationAlgorithm.OutputParameters.isOutputFeatures() |
boolean |
IlastikPixelClassificationAlgorithm.OutputParameters.isOutputFeatures() |
boolean |
IlastikObjectClassificationAlgorithm.OutputParameters.isOutputFeatures() |
boolean |
IlastikSegmentationImageObjectClassificationAlgorithm.OutputParameters.isOutputFeatures() |
boolean |
IlastikAutoContextAlgorithm.OutputParameters.isOutputFeaturesStage1() |
boolean |
IlastikAutoContextAlgorithm.OutputParameters.isOutputFeaturesStage2() |
boolean |
IlastikAutoContextAlgorithm.OutputParameters.isOutputInputStage1() |
boolean |
IlastikAutoContextAlgorithm.OutputParameters.isOutputInputStage2() |
boolean |
IlastikPixelClassificationAlgorithm.OutputParameters.isOutputLabels() |
boolean |
IlastikAutoContextAlgorithm.OutputParameters.isOutputLabelsStage1() |
boolean |
IlastikAutoContextAlgorithm.OutputParameters.isOutputLabelsStage2() |
boolean |
IlastikPredictionMapsObjectClassificationAlgorithm.OutputParameters.isOutputObjectPredictions() |
boolean |
IlastikObjectClassificationAlgorithm.OutputParameters.isOutputObjectPredictions() |
boolean |
IlastikSegmentationImageObjectClassificationAlgorithm.OutputParameters.isOutputObjectPredictions() |
boolean |
IlastikPredictionMapsObjectClassificationAlgorithm.OutputParameters.isOutputObjectProbabilities() |
boolean |
IlastikObjectClassificationAlgorithm.OutputParameters.isOutputObjectProbabilities() |
boolean |
IlastikSegmentationImageObjectClassificationAlgorithm.OutputParameters.isOutputObjectProbabilities() |
boolean |
IlastikPredictionMapsObjectClassificationAlgorithm.OutputParameters.isOutputPixelProbabilities() |
boolean |
IlastikObjectClassificationAlgorithm.OutputParameters.isOutputPixelProbabilities() |
boolean |
IlastikSegmentationImageObjectClassificationAlgorithm.OutputParameters.isOutputPixelProbabilities() |
boolean |
IlastikPixelClassificationAlgorithm.OutputParameters.isOutputProbabilities() |
boolean |
IlastikAutoContextAlgorithm.OutputParameters.isOutputProbabilitiesAllStages() |
boolean |
IlastikAutoContextAlgorithm.OutputParameters.isOutputProbabilitiesStage1() |
boolean |
IlastikAutoContextAlgorithm.OutputParameters.isOutputProbabilitiesStage2() |
boolean |
IlastikPixelClassificationAlgorithm.OutputParameters.isOutputSimpleSegmentation() |
boolean |
IlastikAutoContextAlgorithm.OutputParameters.isOutputSimpleSegmentationStage1() |
boolean |
IlastikAutoContextAlgorithm.OutputParameters.isOutputSimpleSegmentationStage2() |
boolean |
IlastikPixelClassificationAlgorithm.OutputParameters.isOutputUncertainty() |
boolean |
IlastikAutoContextAlgorithm.OutputParameters.isOutputUncertaintyStage1() |
boolean |
IlastikAutoContextAlgorithm.OutputParameters.isOutputUncertaintyStage2() |
void |
ImportIlastikHDF5ImageAlgorithm.setAxes(String axes) |
void |
ExportIlastikHDF5ImageAlgorithm.setAxes(String axes) |
void |
IlastikPredictionMapsObjectClassificationAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards) |
void |
IlastikPixelClassificationAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards) |
void |
IlastikAutoContextAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards) |
void |
IlastikObjectClassificationAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards) |
void |
IlastikSegmentationImageObjectClassificationAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards) |
void |
ImportIlastikHDF5ImageAlgorithm.setHdf5Path(JIPipeExpressionParameter hdf5Path) |
void |
ExportIlastikHDF5ImageAlgorithm.setHdf5Path(JIPipeExpressionParameter hdf5Path) |
void |
IlastikPredictionMapsObjectClassificationAlgorithm.OutputParameters.setOutputBlockwiseObjectPredictions(boolean outputBlockwiseObjectPredictions) |
void |
IlastikObjectClassificationAlgorithm.OutputParameters.setOutputBlockwiseObjectPredictions(boolean outputBlockwiseObjectPredictions) |
void |
IlastikSegmentationImageObjectClassificationAlgorithm.OutputParameters.setOutputBlockwiseObjectPredictions(boolean outputBlockwiseObjectPredictions) |
void |
IlastikPredictionMapsObjectClassificationAlgorithm.OutputParameters.setOutputBlockwiseObjectProbabilities(boolean outputBlockwiseObjectProbabilities) |
void |
IlastikObjectClassificationAlgorithm.OutputParameters.setOutputBlockwiseObjectProbabilities(boolean outputBlockwiseObjectProbabilities) |
void |
IlastikSegmentationImageObjectClassificationAlgorithm.OutputParameters.setOutputBlockwiseObjectProbabilities(boolean outputBlockwiseObjectProbabilities) |
void |
IlastikPredictionMapsObjectClassificationAlgorithm.OutputParameters.setOutputFeatures(boolean outputFeatures) |
void |
IlastikPixelClassificationAlgorithm.OutputParameters.setOutputFeatures(boolean outputFeatures) |
void |
IlastikObjectClassificationAlgorithm.OutputParameters.setOutputFeatures(boolean outputFeatures) |
void |
IlastikSegmentationImageObjectClassificationAlgorithm.OutputParameters.setOutputFeatures(boolean outputFeatures) |
void |
IlastikAutoContextAlgorithm.OutputParameters.setOutputFeaturesStage1(boolean outputFeaturesStage1) |
void |
IlastikAutoContextAlgorithm.OutputParameters.setOutputFeaturesStage2(boolean outputFeaturesStage2) |
void |
IlastikAutoContextAlgorithm.OutputParameters.setOutputInputStage1(boolean outputInputStage1) |
void |
IlastikAutoContextAlgorithm.OutputParameters.setOutputInputStage2(boolean outputInputStage2) |
void |
IlastikPixelClassificationAlgorithm.OutputParameters.setOutputLabels(boolean outputLabels) |
void |
IlastikAutoContextAlgorithm.OutputParameters.setOutputLabelsStage1(boolean outputLabelsStage1) |
void |
IlastikAutoContextAlgorithm.OutputParameters.setOutputLabelsStage2(boolean outputLabelsStage2) |
void |
IlastikPredictionMapsObjectClassificationAlgorithm.OutputParameters.setOutputObjectPredictions(boolean outputObjectPredictions) |
void |
IlastikObjectClassificationAlgorithm.OutputParameters.setOutputObjectPredictions(boolean outputObjectPredictions) |
void |
IlastikSegmentationImageObjectClassificationAlgorithm.OutputParameters.setOutputObjectPredictions(boolean outputObjectPredictions) |
void |
IlastikPredictionMapsObjectClassificationAlgorithm.OutputParameters.setOutputObjectProbabilities(boolean outputObjectProbabilities) |
void |
IlastikObjectClassificationAlgorithm.OutputParameters.setOutputObjectProbabilities(boolean outputObjectProbabilities) |
void |
IlastikSegmentationImageObjectClassificationAlgorithm.OutputParameters.setOutputObjectProbabilities(boolean outputObjectProbabilities) |
void |
IlastikPredictionMapsObjectClassificationAlgorithm.OutputParameters.setOutputPixelProbabilities(boolean outputPixelProbabilities) |
void |
IlastikObjectClassificationAlgorithm.OutputParameters.setOutputPixelProbabilities(boolean outputPixelProbabilities) |
void |
IlastikSegmentationImageObjectClassificationAlgorithm.OutputParameters.setOutputPixelProbabilities(boolean outputPixelProbabilities) |
void |
IlastikPixelClassificationAlgorithm.OutputParameters.setOutputProbabilities(boolean outputProbabilities) |
void |
IlastikAutoContextAlgorithm.OutputParameters.setOutputProbabilitiesAllStages(boolean outputProbabilitiesAllStages) |
void |
IlastikAutoContextAlgorithm.OutputParameters.setOutputProbabilitiesStage1(boolean outputProbabilitiesStage1) |
void |
IlastikAutoContextAlgorithm.OutputParameters.setOutputProbabilitiesStage2(boolean outputProbabilitiesStage2) |
void |
IlastikPixelClassificationAlgorithm.OutputParameters.setOutputSimpleSegmentation(boolean outputSimpleSegmentation) |
void |
IlastikAutoContextAlgorithm.OutputParameters.setOutputSimpleSegmentationStage1(boolean outputSimpleSegmentationStage1) |
void |
IlastikAutoContextAlgorithm.OutputParameters.setOutputSimpleSegmentationStage2(boolean outputSimpleSegmentationStage2) |
void |
IlastikPixelClassificationAlgorithm.OutputParameters.setOutputUncertainty(boolean outputUncertainty) |
void |
IlastikAutoContextAlgorithm.OutputParameters.setOutputUncertaintyStage1(boolean outputUncertaintyStage1) |
void |
IlastikAutoContextAlgorithm.OutputParameters.setOutputUncertaintyStage2(boolean outputUncertaintyStage2) |
void |
IlastikPredictionMapsObjectClassificationAlgorithm.setOverrideEnvironment(OptionalProcessEnvironment overrideEnvironment) |
void |
IlastikPixelClassificationAlgorithm.setOverrideEnvironment(OptionalProcessEnvironment overrideEnvironment) |
void |
IlastikAutoContextAlgorithm.setOverrideEnvironment(OptionalProcessEnvironment overrideEnvironment) |
void |
IlastikObjectClassificationAlgorithm.setOverrideEnvironment(OptionalProcessEnvironment overrideEnvironment) |
void |
IlastikSegmentationImageObjectClassificationAlgorithm.setOverrideEnvironment(OptionalProcessEnvironment overrideEnvironment) |
void |
IlastikPredictionMapsObjectClassificationAlgorithm.setPredictionMapsDataAnnotation(DataAnnotationQueryExpression predictionMapsDataAnnotation) |
void |
IlastikPredictionMapsObjectClassificationAlgorithm.setProjectValidationMode(IlastikProjectValidationMode projectValidationMode) |
void |
IlastikPixelClassificationAlgorithm.setProjectValidationMode(IlastikProjectValidationMode projectValidationMode) |
void |
IlastikAutoContextAlgorithm.setProjectValidationMode(IlastikProjectValidationMode projectValidationMode) |
void |
IlastikObjectClassificationAlgorithm.setProjectValidationMode(IlastikProjectValidationMode projectValidationMode) |
void |
IlastikSegmentationImageObjectClassificationAlgorithm.setProjectValidationMode(IlastikProjectValidationMode projectValidationMode) |
void |
IlastikSegmentationImageObjectClassificationAlgorithm.setSegmentationImageDataAnnotation(DataAnnotationQueryExpression segmentationImageDataAnnotation) |
Modifier and Type | Method and Description |
---|---|
JIPipeDynamicParameterCollection |
ImageJ2OpNode.getModuleParameters() |
Modifier and Type | Method and Description |
---|---|
ImageJ2OutOfBoundsFactoryData |
CreateIJ2OutOfBoundsFactoryAlgorithm.getFactoryData() |
JIPipeDataInfoRef |
CreateIJ2OutOfBoundsFactoryAlgorithm.getFactoryType() |
ImageJ2ShapeData |
CreateIJ2ShapeAlgorithm.getShapeData() |
JIPipeDataInfoRef |
CreateIJ2ShapeAlgorithm.getShapeType() |
void |
CreateIJ2OutOfBoundsFactoryAlgorithm.setFactoryType(JIPipeDataInfoRef factoryType) |
void |
CreateIJ2ShapeAlgorithm.setShapeType(JIPipeDataInfoRef shapeType) |
Modifier and Type | Method and Description |
---|---|
OutOfBoundsMirrorFactory.Boundary |
MirrorImageJ2OutOfBoundsFactoryData.getBoundary() |
void |
MirrorImageJ2OutOfBoundsFactoryData.setBoundary(OutOfBoundsMirrorFactory.Boundary boundary) |
Modifier and Type | Method and Description |
---|---|
byte |
ByteConstantValueImageJ2OutOfBoundsFactoryData.getValue() |
int |
IntegerConstantValueImageJ2OutOfBoundsFactoryData.getValue() |
float |
FloatConstantValueImageJ2OutOfBoundsFactoryData.getValue() |
long |
LongConstantValueImageJ2OutOfBoundsFactoryData.getValue() |
double |
DoubleConstantValueImageJ2OutOfBoundsFactoryData.getValue() |
short |
ShortConstantValueImageJ2OutOfBoundsFactoryData.getValue() |
void |
ByteConstantValueImageJ2OutOfBoundsFactoryData.setValue(byte value) |
void |
DoubleConstantValueImageJ2OutOfBoundsFactoryData.setValue(double value) |
void |
FloatConstantValueImageJ2OutOfBoundsFactoryData.setValue(float value) |
void |
IntegerConstantValueImageJ2OutOfBoundsFactoryData.setValue(int value) |
void |
LongConstantValueImageJ2OutOfBoundsFactoryData.setValue(long value) |
void |
ShortConstantValueImageJ2OutOfBoundsFactoryData.setValue(short value) |
Modifier and Type | Method and Description |
---|---|
IntegerList |
PeriodicLineImageJ2ShapeData.getIncrements() |
int |
HorizontalLineImageJ2ShapeData.getLineDimension() |
LongList |
PairOfPointsImageJ2ShapeData.getOffset() |
long |
DiamondImageJ2ShapeData.getRadius() |
long |
DiamondTipsImageJ2ShapeData.getRadius() |
long |
HyperSphereImageJ2ShapeData.getRadius() |
IntegerList |
CenteredRectangleImageJ2ShapeData.getSpan() |
int |
RectangleImageJ2ShapeData.getSpan() |
long |
HorizontalLineImageJ2ShapeData.getSpan() |
long |
PeriodicLineImageJ2ShapeData.getSpan() |
boolean |
CenteredRectangleImageJ2ShapeData.isSkipCenter() |
boolean |
RectangleImageJ2ShapeData.isSkipCenter() |
boolean |
HorizontalLineImageJ2ShapeData.isSkipCenter() |
void |
PeriodicLineImageJ2ShapeData.setIncrements(IntegerList increments) |
void |
HorizontalLineImageJ2ShapeData.setLineDimension(int lineDimension) |
void |
PairOfPointsImageJ2ShapeData.setOffset(LongList offset) |
void |
DiamondImageJ2ShapeData.setRadius(long radius) |
void |
DiamondTipsImageJ2ShapeData.setRadius(long radius) |
void |
HyperSphereImageJ2ShapeData.setRadius(long radius) |
void |
CenteredRectangleImageJ2ShapeData.setSkipCenter(boolean skipCenter) |
void |
RectangleImageJ2ShapeData.setSkipCenter(boolean skipCenter) |
void |
HorizontalLineImageJ2ShapeData.setSkipCenter(boolean skipCenter) |
void |
RectangleImageJ2ShapeData.setSpan(int span) |
void |
CenteredRectangleImageJ2ShapeData.setSpan(IntegerList span) |
void |
HorizontalLineImageJ2ShapeData.setSpan(long span) |
void |
PeriodicLineImageJ2ShapeData.setSpan(long span) |
Modifier and Type | Method and Description |
---|---|
ImageJMacro |
MacroWrapperAlgorithm.getCode() |
int |
MacroWrapperAlgorithm.getExportDelay() |
int |
MacroWrapperAlgorithm.getImportDelay() |
InputSlotMapParameterCollection |
MacroWrapperAlgorithm.getInputToImageJExporters() |
JIPipeDynamicParameterCollection |
MacroWrapperAlgorithm.getMacroParameters() |
OutputSlotMapParameterCollection |
MacroWrapperAlgorithm.getOutputFromImageJImporters() |
void |
MacroWrapperAlgorithm.setCode(ImageJMacro code) |
void |
MacroWrapperAlgorithm.setExportDelay(int exportDelay) |
void |
MacroWrapperAlgorithm.setImportDelay(int importDelay) |
Modifier and Type | Method and Description |
---|---|
ExpressionTableColumnGeneratorProcessorParameterList |
AnnotateByImageStatisticsExpressionAlgorithm.getAnnotations() |
OptionalStringParameter |
FindParticles2D.getAnnotationType() |
ExpressionTableColumnGeneratorProcessorParameterList |
ImageStatisticsExpressionAlgorithm.getColumns() |
OptionalStringParameter |
ImageStatisticsAlgorithm.getIndexAnnotation() |
double |
FindParticles2D.getMaxParticleCircularity() |
double |
FindParticles2D.getMaxParticleSize() |
ImageStatisticsSetParameter |
ImageStatisticsAlgorithm.getMeasurements() |
double |
FindParticles2D.getMinParticleCircularity() |
double |
FindParticles2D.getMinParticleSize() |
Neighborhood2D |
FindParticles2D.getNeighborhood() |
AnalyzeSkeleton2D3DAlgorithm.OutputParameters |
AnalyzeSkeleton2D3DAlgorithm.getOutputParameters() |
AnalyzeSkeleton2D3DAlgorithm.CycleRemovalMethod |
AnalyzeSkeleton2D3DAlgorithm.getPruneCyclesMethod() |
AnalyzeSkeleton2D3DAlgorithm.EndRemovalMethod |
AnalyzeSkeleton2D3DAlgorithm.getPruneEndsMethod() |
ImageStatisticsSetParameter |
FindParticles2D.getStatisticsParameters() |
ImageROITargetArea |
AnnotateByImageStatisticsExpressionAlgorithm.getTargetArea() |
ImageROITargetArea |
ImageStatisticsExpressionAlgorithm.getTargetArea() |
boolean |
ImageStatisticsExpressionAlgorithm.isApplyPerChannel() |
boolean |
ImageStatisticsAlgorithm.isApplyPerChannel() |
boolean |
ImageStatisticsExpressionAlgorithm.isApplyPerFrame() |
boolean |
ImageStatisticsAlgorithm.isApplyPerFrame() |
boolean |
ImageStatisticsExpressionAlgorithm.isApplyPerSlice() |
boolean |
ImageStatisticsAlgorithm.isApplyPerSlice() |
boolean |
FindParticles2D.isBlackBackground() |
boolean |
FindParticles2D.isCompositeROI() |
boolean |
FindParticles2D.isExcludeEdges() |
boolean |
FindParticles2D.isIncludeHoles() |
boolean |
ImageStatisticsAlgorithm.isMeasureInPhysicalUnits() |
boolean |
FindParticles2D.isMeasureInPhysicalUnits() |
boolean |
AnalyzeSkeleton2D3DAlgorithm.OutputParameters.isOutputBranchTable() |
boolean |
AnalyzeSkeleton2D3DAlgorithm.OutputParameters.isOutputLargestShortestPaths() |
boolean |
AnalyzeSkeleton2D3DAlgorithm.OutputParameters.isOutputSkeletonLabels() |
boolean |
AnalyzeSkeleton2D3DAlgorithm.OutputParameters.isOutputSkeletonTable() |
boolean |
AnalyzeSkeleton2D3DAlgorithm.OutputParameters.isOutputTaggedSkeletons() |
boolean |
FindParticles2D.isSplitSlices() |
void |
AnnotateByImageStatisticsExpressionAlgorithm.setAnnotations(ExpressionTableColumnGeneratorProcessorParameterList annotations) |
void |
FindParticles2D.setAnnotationType(OptionalStringParameter annotationType) |
void |
ImageStatisticsExpressionAlgorithm.setApplyPerChannel(boolean applyPerChannel) |
void |
ImageStatisticsAlgorithm.setApplyPerChannel(boolean applyPerChannel) |
void |
ImageStatisticsExpressionAlgorithm.setApplyPerFrame(boolean applyPerFrame) |
void |
ImageStatisticsAlgorithm.setApplyPerFrame(boolean applyPerFrame) |
void |
ImageStatisticsExpressionAlgorithm.setApplyPerSlice(boolean applyPerSlice) |
void |
ImageStatisticsAlgorithm.setApplyPerSlice(boolean applyPerSlice) |
void |
FindParticles2D.setBlackBackground(boolean blackBackground) |
void |
ImageStatisticsExpressionAlgorithm.setColumns(ExpressionTableColumnGeneratorProcessorParameterList columns) |
void |
FindParticles2D.setCompositeROI(boolean compositeROI) |
void |
FindParticles2D.setExcludeEdges(boolean excludeEdges) |
void |
FindParticles2D.setIncludeHoles(boolean includeHoles) |
void |
ImageStatisticsAlgorithm.setIndexAnnotation(OptionalStringParameter indexAnnotation) |
boolean |
FindParticles2D.setMaxParticleCircularity(double maxParticleCircularity) |
void |
FindParticles2D.setMaxParticleSize(double maxParticleSize) |
void |
ImageStatisticsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits) |
void |
FindParticles2D.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits) |
void |
ImageStatisticsAlgorithm.setMeasurements(ImageStatisticsSetParameter measurements) |
boolean |
FindParticles2D.setMinParticleCircularity(double minParticleCircularity) |
void |
FindParticles2D.setMinParticleSize(double minParticleSize) |
void |
FindParticles2D.setNeighborhood(Neighborhood2D neighborhood) |
void |
AnalyzeSkeleton2D3DAlgorithm.OutputParameters.setOutputBranchTable(boolean outputBranchTable) |
void |
AnalyzeSkeleton2D3DAlgorithm.OutputParameters.setOutputLargestShortestPaths(boolean outputLargestShortestPaths) |
void |
AnalyzeSkeleton2D3DAlgorithm.OutputParameters.setOutputSkeletonLabels(boolean outputSkeletonLabels) |
void |
AnalyzeSkeleton2D3DAlgorithm.OutputParameters.setOutputSkeletonTable(boolean outputSkeletonTable) |
void |
AnalyzeSkeleton2D3DAlgorithm.OutputParameters.setOutputTaggedSkeletons(boolean outputTaggedSkeletons) |
void |
AnalyzeSkeleton2D3DAlgorithm.setPruneCyclesMethod(AnalyzeSkeleton2D3DAlgorithm.CycleRemovalMethod pruneCyclesMethod) |
void |
AnalyzeSkeleton2D3DAlgorithm.setPruneEndsMethod(AnalyzeSkeleton2D3DAlgorithm.EndRemovalMethod pruneEndsMethod) |
void |
FindParticles2D.setSplitSlices(boolean splitSlices) |
void |
FindParticles2D.setStatisticsParameters(ImageStatisticsSetParameter statisticsParameters) |
void |
AnnotateByImageStatisticsExpressionAlgorithm.setTargetArea(ImageROITargetArea targetArea) |
void |
ImageStatisticsExpressionAlgorithm.setTargetArea(ImageROITargetArea targetArea) |
Modifier and Type | Method and Description |
---|---|
RollingBallBackgroundEstimator2DAlgorithm.BackgroundType |
RollingBallBackgroundEstimator2DAlgorithm.getBackgroundType() |
RollingBallBackgroundEstimator2DAlgorithm.Method |
RollingBallBackgroundEstimator2DAlgorithm.getMethod() |
double |
RollingBallBackgroundEstimator2DAlgorithm.getRadius() |
boolean |
RollingBallBackgroundEstimator2DAlgorithm.isCorrectCorners() |
boolean |
RollingBallBackgroundEstimator2DAlgorithm.isPreSmoothing() |
boolean |
RollingBallBackgroundEstimator2DAlgorithm.isSeparateChannels() |
boolean |
RollingBallBackgroundEstimator2DAlgorithm.isSubtract() |
void |
RollingBallBackgroundEstimator2DAlgorithm.setBackgroundType(RollingBallBackgroundEstimator2DAlgorithm.BackgroundType backgroundType) |
void |
RollingBallBackgroundEstimator2DAlgorithm.setCorrectCorners(boolean correctCorners) |
void |
RollingBallBackgroundEstimator2DAlgorithm.setMethod(RollingBallBackgroundEstimator2DAlgorithm.Method method) |
void |
RollingBallBackgroundEstimator2DAlgorithm.setPreSmoothing(boolean preSmoothing) |
boolean |
RollingBallBackgroundEstimator2DAlgorithm.setRadius(double radius) |
void |
RollingBallBackgroundEstimator2DAlgorithm.setSeparateChannels(boolean separateChannels) |
void |
RollingBallBackgroundEstimator2DAlgorithm.setSubtract(boolean subtract) |
Modifier and Type | Method and Description |
---|---|
JIPipeExpressionParameter |
ConditionalInverterAlgorithm.getCondition() |
Neighborhood2D |
ConnectedComponentsLabeling2DAlgorithm.getConnectivity() |
Neighborhood3D |
ConnectedComponentsLabeling3DAlgorithm.getConnectivity() |
int |
RemoveLargestRegionAlgorithm.getIterations() |
LogicalOperation |
BitwiseLogicalOperationAlgorithm.getLogicalOperation() |
int |
VolumeOpening3DAlgorithm.getMinPixels() |
int |
VolumeOpening2DAlgorithm.getMinPixels() |
JIPipeDataInfoRef |
ConnectedComponentsLabeling2DAlgorithm.getOutputType() |
JIPipeDataInfoRef |
ConnectedComponentsLabeling3DAlgorithm.getOutputType() |
boolean |
ConditionalInverterAlgorithm.isApplyPerSlice() |
boolean |
Voronoi2DAlgorithm.isBinarize() |
void |
ConditionalInverterAlgorithm.setApplyPerSlice(boolean applyPerSlice) |
void |
Voronoi2DAlgorithm.setBinarize(boolean binarize) |
void |
ConditionalInverterAlgorithm.setCondition(JIPipeExpressionParameter condition) |
void |
ConnectedComponentsLabeling2DAlgorithm.setConnectivity(Neighborhood2D connectivity) |
void |
ConnectedComponentsLabeling3DAlgorithm.setConnectivity(Neighborhood3D connectivity) |
void |
RemoveLargestRegionAlgorithm.setIterations(int iterations) |
void |
BitwiseLogicalOperationAlgorithm.setLogicalOperation(LogicalOperation logicalOperation) |
void |
VolumeOpening3DAlgorithm.setMinPixels(int minPixels) |
void |
VolumeOpening2DAlgorithm.setMinPixels(int minPixels) |
void |
ConnectedComponentsLabeling2DAlgorithm.setOutputType(JIPipeDataInfoRef outputType) |
void |
ConnectedComponentsLabeling3DAlgorithm.setOutputType(JIPipeDataInfoRef outputType) |
Modifier and Type | Method and Description |
---|---|
double |
MedianBlurFilter2DAlgorithm.getRadius() |
float |
BoxFilter3DAlgorithm.getRadiusX() |
float |
MedianBlurFilter3DAlgorithm.getRadiusX() |
float |
BoxFilter3DAlgorithm.getRadiusY() |
float |
MedianBlurFilter3DAlgorithm.getRadiusY() |
float |
BoxFilter3DAlgorithm.getRadiusZ() |
float |
MedianBlurFilter3DAlgorithm.getRadiusZ() |
double |
GaussianBlur2DAlgorithm.getSigmaX() |
double |
GaussianBlur3DAlgorithm.getSigmaX() |
double |
GaussianBlur2DAlgorithm.getSigmaY() |
double |
GaussianBlur3DAlgorithm.getSigmaY() |
double |
GaussianBlur3DAlgorithm.getSigmaZ() |
boolean |
MedianBlurFilter2DAlgorithm.setRadius(double radius) |
void |
BoxFilter3DAlgorithm.setRadiusX(float radiusX) |
void |
MedianBlurFilter3DAlgorithm.setRadiusX(float radiusX) |
void |
BoxFilter3DAlgorithm.setRadiusY(float radiusY) |
void |
MedianBlurFilter3DAlgorithm.setRadiusY(float radiusY) |
void |
BoxFilter3DAlgorithm.setRadiusZ(float radiusZ) |
void |
MedianBlurFilter3DAlgorithm.setRadiusZ(float radiusZ) |
void |
GaussianBlur2DAlgorithm.setSigmaX(double sigmaX) |
void |
GaussianBlur3DAlgorithm.setSigmaX(double sigmaX) |
void |
GaussianBlur2DAlgorithm.setSigmaY(double sigmaY) |
void |
GaussianBlur3DAlgorithm.setSigmaY(double sigmaY) |
void |
GaussianBlur3DAlgorithm.setSigmaZ(double sigmaZ) |
Modifier and Type | Method and Description |
---|---|
OptionalColorParameter |
DrawScaleBarAlgorithm.getBackgroundColor() |
Color |
DrawScaleBarAlgorithm.getBarColor() |
int |
DrawScaleBarAlgorithm.getBarThickness() |
FontFamilyParameter |
DrawScaleBarAlgorithm.TextSettings.getFontFamily() |
int |
DrawScaleBarAlgorithm.TextSettings.getFontSize() |
FontStyleParameter |
DrawScaleBarAlgorithm.TextSettings.getFontStyle() |
OptionalQuantity |
DrawScaleBarAlgorithm.getHorizontalBarSize() |
JIPipeExpressionParameter |
DrawScaleBarAlgorithm.TextSettings.getHorizontalLabel() |
ScaleBarGenerator.ScaleBarPosition |
DrawScaleBarAlgorithm.getLocation() |
OptionalJIPipeExpressionParameter |
SetPhysicalDimensionsByExpressionsAlgorithm.getPhysicalDimensionT() |
OptionalQuantity |
SetPhysicalDimensionsAlgorithm.getPhysicalDimensionT() |
OptionalTextAnnotationNameParameter |
SetPhysicalDimensionsByAnnotationsAlgorithm.getPhysicalDimensionT() |
OptionalJIPipeExpressionParameter |
SetPhysicalDimensionsByExpressionsAlgorithm.getPhysicalDimensionValue() |
OptionalQuantity |
SetPhysicalDimensionsAlgorithm.getPhysicalDimensionValue() |
OptionalTextAnnotationNameParameter |
SetPhysicalDimensionsByAnnotationsAlgorithm.getPhysicalDimensionValue() |
OptionalJIPipeExpressionParameter |
SetPhysicalDimensionsByExpressionsAlgorithm.getPhysicalDimensionX() |
OptionalQuantity |
SetPhysicalDimensionsAlgorithm.getPhysicalDimensionX() |
OptionalTextAnnotationNameParameter |
SetPhysicalDimensionsByAnnotationsAlgorithm.getPhysicalDimensionX() |
OptionalJIPipeExpressionParameter |
SetPhysicalDimensionsByExpressionsAlgorithm.getPhysicalDimensionY() |
OptionalQuantity |
SetPhysicalDimensionsAlgorithm.getPhysicalDimensionY() |
OptionalTextAnnotationNameParameter |
SetPhysicalDimensionsByAnnotationsAlgorithm.getPhysicalDimensionY() |
OptionalJIPipeExpressionParameter |
SetPhysicalDimensionsByExpressionsAlgorithm.getPhysicalDimensionZ() |
OptionalQuantity |
SetPhysicalDimensionsAlgorithm.getPhysicalDimensionZ() |
OptionalTextAnnotationNameParameter |
SetPhysicalDimensionsByAnnotationsAlgorithm.getPhysicalDimensionZ() |
Color |
DrawScaleBarAlgorithm.TextSettings.getTextColor() |
DrawScaleBarAlgorithm.TextSettings |
DrawScaleBarAlgorithm.getTextSettings() |
OptionalQuantity |
DrawScaleBarAlgorithm.getVerticalBarSize() |
JIPipeExpressionParameter |
DrawScaleBarAlgorithm.TextSettings.getVerticalLabel() |
boolean |
DrawScaleBarAlgorithm.isDrawHorizontal() |
boolean |
DrawScaleBarAlgorithm.isDrawVertical() |
boolean |
DrawScaleBarAlgorithm.TextSettings.isHideLabels() |
void |
DrawScaleBarAlgorithm.setBackgroundColor(OptionalColorParameter backgroundColor) |
void |
DrawScaleBarAlgorithm.setBarColor(Color barColor) |
void |
DrawScaleBarAlgorithm.setBarThickness(int barThickness) |
void |
DrawScaleBarAlgorithm.setDrawHorizontal(boolean drawHorizontal) |
void |
DrawScaleBarAlgorithm.setDrawVertical(boolean drawVertical) |
void |
DrawScaleBarAlgorithm.TextSettings.setFontFamily(FontFamilyParameter fontFamily) |
void |
DrawScaleBarAlgorithm.TextSettings.setFontSize(int fontSize) |
void |
DrawScaleBarAlgorithm.TextSettings.setFontStyle(FontStyleParameter fontStyle) |
void |
DrawScaleBarAlgorithm.TextSettings.setHideLabels(boolean hideLabels) |
void |
DrawScaleBarAlgorithm.setHorizontalBarSize(OptionalQuantity horizontalBarSize) |
void |
DrawScaleBarAlgorithm.TextSettings.setHorizontalLabel(JIPipeExpressionParameter horizontalLabel) |
void |
DrawScaleBarAlgorithm.setLocation(ScaleBarGenerator.ScaleBarPosition location) |
void |
SetPhysicalDimensionsByExpressionsAlgorithm.setPhysicalDimensionT(OptionalJIPipeExpressionParameter physicalDimensionT) |
void |
SetPhysicalDimensionsAlgorithm.setPhysicalDimensionT(OptionalQuantity physicalDimensionT) |
void |
SetPhysicalDimensionsByAnnotationsAlgorithm.setPhysicalDimensionT(OptionalTextAnnotationNameParameter physicalDimensionT) |
void |
SetPhysicalDimensionsByExpressionsAlgorithm.setPhysicalDimensionValue(OptionalJIPipeExpressionParameter physicalDimensionValue) |
void |
SetPhysicalDimensionsAlgorithm.setPhysicalDimensionValue(OptionalQuantity physicalDimensionValue) |
void |
SetPhysicalDimensionsByAnnotationsAlgorithm.setPhysicalDimensionValue(OptionalTextAnnotationNameParameter physicalDimensionValue) |
void |
SetPhysicalDimensionsByExpressionsAlgorithm.setPhysicalDimensionX(OptionalJIPipeExpressionParameter physicalDimensionX) |
void |
SetPhysicalDimensionsAlgorithm.setPhysicalDimensionX(OptionalQuantity physicalDimensionX) |
void |
SetPhysicalDimensionsByAnnotationsAlgorithm.setPhysicalDimensionX(OptionalTextAnnotationNameParameter physicalDimensionX) |
void |
SetPhysicalDimensionsByExpressionsAlgorithm.setPhysicalDimensionY(OptionalJIPipeExpressionParameter physicalDimensionY) |
void |
SetPhysicalDimensionsAlgorithm.setPhysicalDimensionY(OptionalQuantity physicalDimensionY) |
void |
SetPhysicalDimensionsByAnnotationsAlgorithm.setPhysicalDimensionY(OptionalTextAnnotationNameParameter physicalDimensionY) |
void |
SetPhysicalDimensionsByExpressionsAlgorithm.setPhysicalDimensionZ(OptionalJIPipeExpressionParameter physicalDimensionZ) |
void |
SetPhysicalDimensionsAlgorithm.setPhysicalDimensionZ(OptionalQuantity physicalDimensionZ) |
void |
SetPhysicalDimensionsByAnnotationsAlgorithm.setPhysicalDimensionZ(OptionalTextAnnotationNameParameter physicalDimensionZ) |
void |
DrawScaleBarAlgorithm.TextSettings.setTextColor(Color textColor) |
void |
DrawScaleBarAlgorithm.setVerticalBarSize(OptionalQuantity verticalBarSize) |
void |
DrawScaleBarAlgorithm.TextSettings.setVerticalLabel(JIPipeExpressionParameter verticalLabel) |
Modifier and Type | Method and Description |
---|---|
String |
Coloc2Node.getChannel1Name() |
String |
Coloc2Node.getChannel2Name() |
int |
Coloc2Node.Settings.getCostesRandomizations() |
OptionalTextAnnotationNameParameter |
Coloc2Node.getHistogramNameAnnotation() |
OptionalTextAnnotationNameParameter |
Coloc2Node.getPlotNameAnnotation() |
int |
Coloc2Node.Settings.getPsf() |
Coloc2Node.Settings |
Coloc2Node.getSettings() |
AutoThresholdRegression.Implementation |
Coloc2Node.Settings.getThresholdRegression() |
boolean |
Coloc2Node.Settings.isCostesSignificanceTest() |
boolean |
Coloc2Node.isInputMasks() |
boolean |
Coloc2Node.Settings.isIntensityHistogram2D() |
boolean |
Coloc2Node.Settings.isKendallTauRankCorrelation() |
boolean |
Coloc2Node.Settings.isLiHistogramChannel1() |
boolean |
Coloc2Node.Settings.isLiHistogramChannel2() |
boolean |
Coloc2Node.Settings.isLiICQ() |
boolean |
Coloc2Node.Settings.isMandersCorrelation() |
boolean |
Coloc2Node.isOutputWarnings() |
boolean |
Coloc2Node.Settings.isSpearmanRankCorrelation() |
void |
Coloc2Node.setChannel1Name(String channel1Name) |
void |
Coloc2Node.setChannel2Name(String channel2Name) |
void |
Coloc2Node.Settings.setCostesRandomizations(int costesRandomizations) |
void |
Coloc2Node.Settings.setCostesSignificanceTest(boolean costesSignificanceTest) |
void |
Coloc2Node.setHistogramNameAnnotation(OptionalTextAnnotationNameParameter histogramNameAnnotation) |
void |
Coloc2Node.setInputMasks(boolean inputMasks) |
void |
Coloc2Node.Settings.setIntensityHistogram2D(boolean intensityHistogram2D) |
void |
Coloc2Node.Settings.setKendallTauRankCorrelation(boolean kendallTauRankCorrelation) |
void |
Coloc2Node.Settings.setLiHistogramChannel1(boolean liHistogramChannel1) |
void |
Coloc2Node.Settings.setLiHistogramChannel2(boolean liHistogramChannel2) |
void |
Coloc2Node.Settings.setLiICQ(boolean liICQ) |
void |
Coloc2Node.Settings.setMandersCorrelation(boolean mandersCorrelation) |
void |
Coloc2Node.setOutputWarnings(boolean outputWarnings) |
void |
Coloc2Node.setPlotNameAnnotation(OptionalTextAnnotationNameParameter plotNameAnnotation) |
void |
Coloc2Node.Settings.setPsf(int psf) |
void |
Coloc2Node.Settings.setSpearmanRankCorrelation(boolean spearmanRankCorrelation) |
void |
Coloc2Node.Settings.setThresholdRegression(AutoThresholdRegression.Implementation thresholdRegression) |
Modifier and Type | Method and Description |
---|---|
String |
SplitChannelsAlgorithm.getAnnotationColumnChannelIndex()
Deprecated.
|
JIPipeExpressionParameter |
SplitChannelsByTableAlgorithm.getAnnotationColumnFilter() |
String |
SplitChannelsAlgorithm.getAnnotationColumnSlotName()
Deprecated.
|
InputSlotMapParameterCollection |
OverlayImagesAlgorithm.getChannelColorAssignment()
Deprecated.
|
InputSlotMapParameterCollection |
MergeChannelsAlgorithm.getChannelColorAssignment() |
JIPipeExpressionParameter |
SplitChannelsByTableAlgorithm.getChannelColumnFilter() |
OptionalTextAnnotationNameParameter |
SplitChannelsByTableAlgorithm.getChannelIndexAnnotation() |
OptionalTextAnnotationNameParameter |
NewSplitChannelsAlgorithm.getChannelIndexAnnotation() |
OptionalTextAnnotationNameParameter |
SplitChannelsByTableAlgorithm.getChannelNameAnnotation() |
OptionalTextAnnotationNameParameter |
NewSplitChannelsAlgorithm.getChannelNameAnnotation() |
IntegerAndIntegerPairParameter.List |
ArrangeChannelsAlgorithm.getChannelReordering() |
OutputSlotMapParameterCollection |
SplitChannelsAlgorithm.getChannelToSlotAssignment()
Deprecated.
|
OutputSlotMapParameterCollection |
NewSplitChannelsAlgorithm.getChannelToSlotAssignment() |
Color |
OverlayImagesAlgorithm.Channel.getColor() |
Color |
SetToColorAlgorithm.getColor() |
JIPipeExpressionParameter |
ColorToGreyscaleExpression2D.getExpression() |
InputSlotMapParameterCollection |
BlendImagesAlgorithm.getLayers() |
double |
OverlayImagesAlgorithm.Channel.getOpacity() |
JIPipeDataInfoRef |
ColorToGreyscaleExpression2D.getOutputType() |
double |
SetToValueAlgorithm.getValue() |
boolean |
SplitChannelsAlgorithm.isAnnotateWithChannelIndex()
Deprecated.
|
boolean |
SplitChannelsAlgorithm.isAnnotateWithSlotName()
Deprecated.
|
boolean |
OverlayImagesAlgorithm.Channel.isBlackToAlpha() |
boolean |
MergeChannelsAlgorithm.isCreateComposite() |
boolean |
SplitChannelsByTableAlgorithm.isIgnoreAnnotationColumnsOnTrivialMatch() |
boolean |
SplitChannelsAlgorithm.isIgnoreMissingChannels()
Deprecated.
|
boolean |
SplitChannelsByTableAlgorithm.isIgnoreMissingChannels() |
boolean |
NewSplitChannelsAlgorithm.isIgnoreMissingChannels() |
boolean |
SplitChannelsByTableAlgorithm.isIgnoreMissingImages() |
boolean |
SplitChannelsByTableAlgorithm.isIgnoreMissingOutputs() |
boolean |
ArrangeChannelsAlgorithm.isKeepSameChannelCount() |
boolean |
BlendImagesAlgorithm.isRenderGreyscaleImages() |
void |
SplitChannelsAlgorithm.setAnnotateWithChannelIndex(boolean annotateWithChannelIndex)
Deprecated.
|
void |
SplitChannelsAlgorithm.setAnnotateWithSlotName(boolean annotateWithSlotName)
Deprecated.
|
void |
SplitChannelsAlgorithm.setAnnotationColumnChannelIndex(String annotationColumnChannelIndex)
Deprecated.
|
void |
SplitChannelsByTableAlgorithm.setAnnotationColumnFilter(JIPipeExpressionParameter annotationColumnFilter) |
void |
SplitChannelsAlgorithm.setAnnotationColumnSlotName(String annotationColumnSlotName)
Deprecated.
|
void |
OverlayImagesAlgorithm.Channel.setBlackToAlpha(boolean blackToAlpha) |
void |
SplitChannelsByTableAlgorithm.setChannelColumnFilter(JIPipeExpressionParameter channelColumnFilter) |
void |
SplitChannelsByTableAlgorithm.setChannelIndexAnnotation(OptionalTextAnnotationNameParameter channelIndexAnnotation) |
void |
NewSplitChannelsAlgorithm.setChannelIndexAnnotation(OptionalTextAnnotationNameParameter channelIndexAnnotation) |
void |
SplitChannelsByTableAlgorithm.setChannelNameAnnotation(OptionalTextAnnotationNameParameter channelNameAnnotation) |
void |
NewSplitChannelsAlgorithm.setChannelNameAnnotation(OptionalTextAnnotationNameParameter channelNameAnnotation) |
void |
ArrangeChannelsAlgorithm.setChannelReordering(IntegerAndIntegerPairParameter.List channelReordering) |
void |
OverlayImagesAlgorithm.Channel.setColor(Color color) |
void |
SetToColorAlgorithm.setColor(Color color) |
void |
MergeChannelsAlgorithm.setCreateComposite(boolean createComposite) |
void |
ColorToGreyscaleExpression2D.setExpression(JIPipeExpressionParameter expression) |
void |
SplitChannelsByTableAlgorithm.setIgnoreAnnotationColumnsOnTrivialMatch(boolean ignoreAnnotationColumnsOnTrivialMatch) |
void |
SplitChannelsAlgorithm.setIgnoreMissingChannels(boolean ignoreMissingChannels)
Deprecated.
|
void |
SplitChannelsByTableAlgorithm.setIgnoreMissingChannels(boolean ignoreMissingChannels) |
void |
NewSplitChannelsAlgorithm.setIgnoreMissingChannels(boolean ignoreMissingChannels) |
void |
SplitChannelsByTableAlgorithm.setIgnoreMissingImages(boolean ignoreMissingImages) |
void |
SplitChannelsByTableAlgorithm.setIgnoreMissingOutputs(boolean ignoreMissingOutputs) |
void |
ArrangeChannelsAlgorithm.setKeepSameChannelCount(boolean keepSameChannelCount) |
void |
OverlayImagesAlgorithm.Channel.setOpacity(double opacity) |
void |
ColorToGreyscaleExpression2D.setOutputType(JIPipeDataInfoRef outputType) |
void |
BlendImagesAlgorithm.setRenderGreyscaleImages(boolean renderGreyscaleImages) |
void |
SetToValueAlgorithm.setValue(double value) |
Modifier and Type | Method and Description |
---|---|
int |
CLAHEContrastEnhancer.getBins() |
int |
CLAHEContrastEnhancer.getBlockRadius() |
GaussianBlur2DAlgorithm |
IlluminationCorrection2DAlgorithm.getGaussianAlgorithm() |
float |
CLAHEContrastEnhancer.getMaxSlope() |
HistogramContrastEnhancerAlgorithm.Method |
HistogramContrastEnhancerAlgorithm.getMethod() |
double |
HistogramContrastEnhancerAlgorithm.getSaturatedPixels() |
boolean |
CLAHEContrastEnhancer.isFastMode() |
boolean |
HistogramContrastEnhancerAlgorithm.isUseStackHistogram() |
void |
CLAHEContrastEnhancer.setBins(int bins) |
void |
CLAHEContrastEnhancer.setBlockRadius(int blockRadius) |
void |
CLAHEContrastEnhancer.setFastMode(boolean fastMode) |
void |
CLAHEContrastEnhancer.setMaxSlope(float maxSlope) |
void |
HistogramContrastEnhancerAlgorithm.setMethod(HistogramContrastEnhancerAlgorithm.Method method) |
boolean |
HistogramContrastEnhancerAlgorithm.setSaturatedPixels(double saturatedPixels) |
void |
HistogramContrastEnhancerAlgorithm.setUseStackHistogram(boolean useStackHistogram) |
Modifier and Type | Method and Description |
---|---|
JIPipeDynamicParameterCollection |
TableToImageAlgorithm.getColumnAssignment() |
OptionalIntegerParameter |
TableToImageAlgorithm.getCustomHeight() |
OptionalIntegerParameter |
TableToImageAlgorithm.getCustomSizeC() |
OptionalIntegerParameter |
TableToImageAlgorithm.getCustomSizeT() |
OptionalIntegerParameter |
TableToImageAlgorithm.getCustomSizeZ() |
OptionalIntegerParameter |
TableToImageAlgorithm.getCustomWidth() |
JIPipeDataInfoRef |
ConvertImageAlgorithm.getGeneratedImageType() |
JIPipeDataInfoRef |
MatrixToImageAlgorithm.getOutputImageType() |
JIPipeDataInfoRef |
TableToImageAlgorithm.getOutputImageType() |
TableColumnSourceExpressionParameter |
TableColumnToImageAlgorithm.getSelectedColumn() |
String |
ImageToTableAlgorithm.getSliceAnnotation() |
String |
ImageToTableColumnAlgorithm.getTargetColumnName() |
boolean |
ImageToTableAlgorithm.isApplyPerSlice() |
void |
ImageToTableAlgorithm.setApplyPerSlice(boolean applyPerSlice) |
void |
TableToImageAlgorithm.setCustomHeight(OptionalIntegerParameter customHeight) |
void |
TableToImageAlgorithm.setCustomSizeC(OptionalIntegerParameter customSizeC) |
void |
TableToImageAlgorithm.setCustomSizeT(OptionalIntegerParameter customSizeT) |
void |
TableToImageAlgorithm.setCustomSizeZ(OptionalIntegerParameter customSizeZ) |
void |
TableToImageAlgorithm.setCustomWidth(OptionalIntegerParameter customWidth) |
void |
ConvertImageAlgorithm.setGeneratedImageType(JIPipeDataInfoRef generatedImageType) |
void |
MatrixToImageAlgorithm.setOutputImageType(JIPipeDataInfoRef outputImageType) |
void |
TableToImageAlgorithm.setOutputImageType(JIPipeDataInfoRef outputImageType) |
void |
TableColumnToImageAlgorithm.setSelectedColumn(TableColumnSourceExpressionParameter selectedColumn) |
void |
ImageToTableAlgorithm.setSliceAnnotation(String sliceAnnotation) |
void |
ImageToTableColumnAlgorithm.setTargetColumnName(String targetColumnName) |
Modifier and Type | Method and Description |
---|---|
Matrix2DFloat |
ConvolveByParameter2DAlgorithm.getMatrix() |
boolean |
ConvolveByParameter2DAlgorithm.isNormalize() |
boolean |
ConvolveByImage2DAlgorithm.isNormalize() |
void |
ConvolveByParameter2DAlgorithm.setMatrix(Matrix2DFloat matrix) |
void |
ConvolveByParameter2DAlgorithm.setNormalize(boolean normalize) |
void |
ConvolveByImage2DAlgorithm.setNormalize(boolean normalize) |
Modifier and Type | Method and Description |
---|---|
OMEExporterSettings |
OMEImageFromImagePlus.getExporterSettings() |
PathQueryExpression |
ImageStackFromFolder.getFilterExpression() |
JIPipeDataInfoRef |
ImageStackFromFolder.getGeneratedImageType() |
HyperstackDimension |
ImageStackFromFolder.getOutputDimension() |
IntegerRange |
ImageStackFromFolder.getSlicesToImport() |
boolean |
ImageStackFromFolder.isForceNativeImport() |
boolean |
ImageStackFromFolder.isIgnoreInvalidSlices() |
boolean |
ImageStackFromFolder.isRemoveLut() |
boolean |
ImageStackFromFolder.isSortFilesNumerically() |
void |
ImageStackFromFolder.setFilterExpression(PathQueryExpression filterExpression) |
void |
ImageStackFromFolder.setForceNativeImport(boolean forceNativeImport) |
void |
ImageStackFromFolder.setGeneratedImageType(JIPipeDataInfoRef generatedImageType) |
void |
ImageStackFromFolder.setIgnoreInvalidSlices(boolean ignoreInvalidSlices) |
void |
ImageStackFromFolder.setOutputDimension(HyperstackDimension outputDimension) |
void |
ImageStackFromFolder.setRemoveLut(boolean removeLut) |
void |
ImageStackFromFolder.setSlicesToImport(IntegerRange slicesToImport) |
void |
ImageStackFromFolder.setSortFilesNumerically(boolean sortFilesNumerically) |
Modifier and Type | Method and Description |
---|---|
OptionalTextAnnotationNameParameter |
HyperstackSlicerAlgorithm.getAnnotateC() |
OptionalTextAnnotationNameParameter |
ExpressionSlicerAlgorithm.getAnnotateC() |
OptionalTextAnnotationNameParameter |
HyperstackSlicerAlgorithm.getAnnotateT() |
OptionalTextAnnotationNameParameter |
ExpressionSlicerAlgorithm.getAnnotateT() |
OptionalTextAnnotationNameParameter |
HyperstackSlicerAlgorithm.getAnnotateZ() |
OptionalTextAnnotationNameParameter |
ExpressionSlicerAlgorithm.getAnnotateZ() |
OptionalTextAnnotationNameParameter |
StackTo2DAlgorithm.getAnnotationC() |
OptionalTextAnnotationNameParameter |
StackTo2DAlgorithm.getAnnotationIndex() |
JIPipeTextAnnotationMergeMode |
SplitByDimensionAlgorithm.getAnnotationMergeStrategy() |
OptionalTextAnnotationNameParameter |
StackTo2DAlgorithm.getAnnotationT() |
String |
StackSplitterAlgorithm.getAnnotationType() |
OptionalTextAnnotationNameParameter |
StackTo2DAlgorithm.getAnnotationZ() |
String |
CreateStackAlgorithm.getCounterAnnotation() |
HyperstackDimension |
StackToDimensionMergerAlgorithm.getCreatedDimension() |
HyperstackDimension |
StackToDimensionMerger2Algorithm.getCreatedDimension() |
JIPipeExpressionParameter |
ExpressionSlicerAlgorithm.getExpressionC() |
JIPipeExpressionParameter |
ExpressionSlicerAlgorithm.getExpressionT() |
JIPipeExpressionParameter |
ExpressionSlicerAlgorithm.getExpressionZ() |
IntegerRange |
HyperstackSlicerAlgorithm.getIndicesC() |
IntegerRange |
HyperstackSlicerAlgorithm.getIndicesT() |
IntegerRange |
HyperstackSlicerAlgorithm.getIndicesZ() |
ZProjectorAlgorithm.Method |
ZProjectorAlgorithm.getMethod() |
ZProjectorAlgorithm.Method |
NewZProjectorAlgorithm.getMethod() |
JIPipeExpressionParameter |
ReorderHyperstackSlicesExpressionAlgorithm.getNewLocationExpression() |
InputSlotMapParameterCollection |
StackToDimensionMerger2Algorithm.getOrderAssignment() |
HyperstackDimension |
CreateStackAlgorithm.getOutputDimension() |
OutputSlotMapParameterCollection |
SplitByDimensionAlgorithm.getOutputIndices() |
Anchor |
ResliceAlgorithm.getPlaneStartLocation() |
HyperstackDimension |
NewZProjectorAlgorithm.getProjectedAxis() |
OptionalIntegerRange |
NewZProjectorAlgorithm.getRestrictToIndices() |
JIPipeExpressionParameter |
Merge2DToHyperstackAlgorithm.getSliceCLocation() |
JIPipeExpressionParameter |
Merge2DToHyperstackAlgorithm.getSliceTLocation() |
JIPipeExpressionParameter |
Merge2DToHyperstackAlgorithm.getSliceZLocation() |
OutputSlotMapParameterCollection |
StackSplitterAlgorithm.getStackAssignments() |
int |
ZProjectorAlgorithm.getStartSlice() |
int |
ZProjectorAlgorithm.getStopSlice() |
HyperstackDimension |
ReorderDimensionsAlgorithm.getTargetC() |
HyperstackDimension |
StackCombinerAlgorithm.getTargetDimension() |
HyperstackDimension |
SplitByDimensionAlgorithm.getTargetDimension() |
OptionalTextAnnotationNameParameter |
SplitByDimensionAlgorithm.getTargetDimensionAnnotation() |
HyperstackDimension |
ReorderDimensionsAlgorithm.getTargetT() |
HyperstackDimension |
ReorderDimensionsAlgorithm.getTargetZ() |
boolean |
ResliceAlgorithm.isFlipVertical() |
boolean |
StackSplitterAlgorithm.isIgnoreMissingSlices() |
boolean |
ExpressionSlicerAlgorithm.isIteratePerC() |
boolean |
ExpressionSlicerAlgorithm.isIteratePerT() |
boolean |
ExpressionSlicerAlgorithm.isIteratePerZ() |
boolean |
ResliceAlgorithm.isNoInterpolation() |
boolean |
ZProjectorAlgorithm.isProjectAllHyperstackTimePoints() |
boolean |
ExpressionSlicerAlgorithm.isRemoveDuplicates() |
boolean |
ResliceAlgorithm.isRotate() |
boolean |
ReorderHyperstackSlicesExpressionAlgorithm.isSilentlyOverride() |
boolean |
StackSplitterAlgorithm.isSortedStackIds() |
boolean |
StackSplitterAlgorithm.isUniqueStackIds() |
void |
HyperstackSlicerAlgorithm.setAnnotateC(OptionalTextAnnotationNameParameter annotateC) |
void |
ExpressionSlicerAlgorithm.setAnnotateC(OptionalTextAnnotationNameParameter annotateC) |
void |
HyperstackSlicerAlgorithm.setAnnotateT(OptionalTextAnnotationNameParameter annotateT) |
void |
ExpressionSlicerAlgorithm.setAnnotateT(OptionalTextAnnotationNameParameter annotateT) |
void |
HyperstackSlicerAlgorithm.setAnnotateZ(OptionalTextAnnotationNameParameter annotateZ) |
void |
ExpressionSlicerAlgorithm.setAnnotateZ(OptionalTextAnnotationNameParameter annotateZ) |
void |
StackTo2DAlgorithm.setAnnotationC(OptionalTextAnnotationNameParameter annotationC) |
void |
StackTo2DAlgorithm.setAnnotationIndex(OptionalTextAnnotationNameParameter annotationIndex) |
void |
SplitByDimensionAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy) |
void |
StackTo2DAlgorithm.setAnnotationT(OptionalTextAnnotationNameParameter annotationT) |
void |
StackSplitterAlgorithm.setAnnotationType(String annotationType) |
void |
StackTo2DAlgorithm.setAnnotationZ(OptionalTextAnnotationNameParameter annotationZ) |
void |
CreateStackAlgorithm.setCounterAnnotation(String counterAnnotation) |
void |
StackToDimensionMergerAlgorithm.setCreatedDimension(HyperstackDimension createdDimension) |
void |
StackToDimensionMerger2Algorithm.setCreatedDimension(HyperstackDimension createdDimension) |
void |
ExpressionSlicerAlgorithm.setExpressionC(JIPipeExpressionParameter expressionC) |
void |
ExpressionSlicerAlgorithm.setExpressionT(JIPipeExpressionParameter expressionT) |
void |
ExpressionSlicerAlgorithm.setExpressionZ(JIPipeExpressionParameter expressionZ) |
void |
ResliceAlgorithm.setFlipVertical(boolean flipVertical) |
void |
StackSplitterAlgorithm.setIgnoreMissingSlices(boolean ignoreMissingSlices) |
void |
HyperstackSlicerAlgorithm.setIndicesC(IntegerRange indicesC) |
void |
HyperstackSlicerAlgorithm.setIndicesT(IntegerRange indicesT) |
void |
HyperstackSlicerAlgorithm.setIndicesZ(IntegerRange indicesZ) |
void |
ExpressionSlicerAlgorithm.setIteratePerC(boolean iteratePerC) |
void |
ExpressionSlicerAlgorithm.setIteratePerT(boolean iteratePerT) |
void |
ExpressionSlicerAlgorithm.setIteratePerZ(boolean iteratePerZ) |
void |
ZProjectorAlgorithm.setMethod(ZProjectorAlgorithm.Method method) |
void |
NewZProjectorAlgorithm.setMethod(ZProjectorAlgorithm.Method method) |
void |
ReorderHyperstackSlicesExpressionAlgorithm.setNewLocationExpression(JIPipeExpressionParameter newLocationExpression) |
void |
ResliceAlgorithm.setNoInterpolation(boolean noInterpolation) |
void |
CreateStackAlgorithm.setOutputDimension(HyperstackDimension outputDimension) |
void |
ResliceAlgorithm.setPlaneStartLocation(Anchor planeStartLocation) |
void |
ZProjectorAlgorithm.setProjectAllHyperstackTimePoints(boolean projectAllHyperstackTimePoints) |
void |
NewZProjectorAlgorithm.setProjectedAxis(HyperstackDimension projectedAxis) |
void |
ExpressionSlicerAlgorithm.setRemoveDuplicates(boolean removeDuplicates) |
void |
NewZProjectorAlgorithm.setRestrictToIndices(OptionalIntegerRange restrictToIndices) |
void |
ResliceAlgorithm.setRotate(boolean rotate) |
void |
ReorderHyperstackSlicesExpressionAlgorithm.setSilentlyOverride(boolean silentlyOverride) |
void |
Merge2DToHyperstackAlgorithm.setSliceCLocation(JIPipeExpressionParameter sliceCLocation) |
void |
Merge2DToHyperstackAlgorithm.setSliceTLocation(JIPipeExpressionParameter sliceTLocation) |
void |
Merge2DToHyperstackAlgorithm.setSliceZLocation(JIPipeExpressionParameter sliceZLocation) |
void |
StackSplitterAlgorithm.setSortedStackIds(boolean sortedStackIds) |
boolean |
ZProjectorAlgorithm.setStartSlice(int startSlice) |
boolean |
ZProjectorAlgorithm.setStopSlice(int stopSlice) |
void |
ReorderDimensionsAlgorithm.setTargetC(HyperstackDimension targetC) |
void |
StackCombinerAlgorithm.setTargetDimension(HyperstackDimension targetDimension) |
void |
SplitByDimensionAlgorithm.setTargetDimension(HyperstackDimension targetDimension) |
void |
SplitByDimensionAlgorithm.setTargetDimensionAnnotation(OptionalTextAnnotationNameParameter targetDimensionAnnotation) |
void |
ReorderDimensionsAlgorithm.setTargetT(HyperstackDimension targetT) |
void |
ReorderDimensionsAlgorithm.setTargetZ(HyperstackDimension targetZ) |
Modifier and Type | Method and Description |
---|---|
float |
CannyEdgeDetectorAlgorithm.getGaussianKernelRadius() |
int |
CannyEdgeDetectorAlgorithm.getGaussianKernelWidth() |
double |
CannyEdgeDetectorAlgorithm.getHighThreshold() |
double |
CannyEdgeDetectorAlgorithm.getLowThreshold() |
LaplacianEdgeDetectorAlgorithm.Mode |
LaplacianEdgeDetectorAlgorithm.getMode() |
boolean |
CannyEdgeDetectorAlgorithm.isNormalizeContrast() |
boolean |
LaplacianEdgeDetectorAlgorithm.isRemoveNegativeValues() |
void |
CannyEdgeDetectorAlgorithm.setGaussianKernelRadius(float gaussianKernelRadius) |
void |
CannyEdgeDetectorAlgorithm.setGaussianKernelWidth(int gaussianKernelWidth) |
void |
CannyEdgeDetectorAlgorithm.setHighThreshold(double highThreshold) |
void |
CannyEdgeDetectorAlgorithm.setLowThreshold(double lowThreshold) |
void |
LaplacianEdgeDetectorAlgorithm.setMode(LaplacianEdgeDetectorAlgorithm.Mode mode) |
void |
CannyEdgeDetectorAlgorithm.setNormalizeContrast(boolean normalizeContrast) |
void |
LaplacianEdgeDetectorAlgorithm.setRemoveNegativeValues(boolean removeNegativeValues) |
Modifier and Type | Method and Description |
---|---|
double |
MeijeringVesselness2DFeatures.getAlpha() |
double |
LocalMaxima2DAlgorithm.getHeightTolerance() |
int |
DirectionalFilter2DAlgorithm.getLineLength() |
double |
FrangiVesselnessFeatures.getMaximumScale() |
double |
FrangiVesselnessFeatures.getMinimumScale() |
int |
DirectionalFilter2DAlgorithm.getnDirections() |
int |
FrangiVesselnessFeatures.getNumScales() |
DirectionalFilter.Operation |
DirectionalFilter2DAlgorithm.getOperation() |
LocalMaxima2DAlgorithm.OutputType |
LocalMaxima2DAlgorithm.getOutputType() |
int |
LaplacianOfGaussian2DAlgorithm.getRadius() |
DoubleList |
MeijeringVesselness2DFeatures.getScales() |
double |
DifferenceOfGaussian2DAlgorithm.getSigma0X() |
double |
DifferenceOfGaussian2DAlgorithm.getSigma0Y() |
double |
DifferenceOfGaussian2DAlgorithm.getSigma1X() |
double |
DifferenceOfGaussian2DAlgorithm.getSigma1Y() |
FrangiVesselnessFeatures.SlicingMode |
FrangiVesselnessFeatures.getSlicingMode() |
double |
LocalMaxima2DAlgorithm.getThreshold() |
DirectionalFilter.Type |
DirectionalFilter2DAlgorithm.getType() |
boolean |
LocalMaxima2DAlgorithm.isExcludeOnEdges() |
boolean |
LocalMaxima2DAlgorithm.isInputIsEDM() |
boolean |
FrangiVesselnessFeatures.isInvert() |
boolean |
MeijeringVesselness2DFeatures.isInvert() |
boolean |
LocalMaxima2DAlgorithm.isStrict() |
void |
MeijeringVesselness2DFeatures.setAlpha(double alpha) |
void |
LocalMaxima2DAlgorithm.setExcludeOnEdges(boolean excludeOnEdges) |
void |
LocalMaxima2DAlgorithm.setHeightTolerance(double heightTolerance) |
void |
LocalMaxima2DAlgorithm.setInputIsEDM(boolean inputIsEDM) |
void |
FrangiVesselnessFeatures.setInvert(boolean invert) |
void |
MeijeringVesselness2DFeatures.setInvert(boolean invert) |
void |
DirectionalFilter2DAlgorithm.setLineLength(int lineLength) |
void |
FrangiVesselnessFeatures.setMaximumScale(double maximumScale) |
void |
FrangiVesselnessFeatures.setMinimumScale(double minimumScale) |
void |
DirectionalFilter2DAlgorithm.setnDirections(int nDirections) |
void |
FrangiVesselnessFeatures.setNumScales(int numScales) |
void |
DirectionalFilter2DAlgorithm.setOperation(DirectionalFilter.Operation operation) |
void |
LocalMaxima2DAlgorithm.setOutputType(LocalMaxima2DAlgorithm.OutputType outputType) |
void |
LaplacianOfGaussian2DAlgorithm.setRadius(int radius) |
void |
MeijeringVesselness2DFeatures.setScales(DoubleList scales) |
void |
DifferenceOfGaussian2DAlgorithm.setSigma0X(double sigma0X) |
void |
DifferenceOfGaussian2DAlgorithm.setSigma0Y(double sigma0Y) |
void |
DifferenceOfGaussian2DAlgorithm.setSigma1X(double sigma1X) |
void |
DifferenceOfGaussian2DAlgorithm.setSigma1Y(double sigma1Y) |
void |
FrangiVesselnessFeatures.setSlicingMode(FrangiVesselnessFeatures.SlicingMode slicingMode) |
void |
LocalMaxima2DAlgorithm.setStrict(boolean strict) |
void |
LocalMaxima2DAlgorithm.setThreshold(double threshold) |
void |
DirectionalFilter2DAlgorithm.setType(DirectionalFilter.Type type) |
Modifier and Type | Method and Description |
---|---|
ColorMap |
GenerateLUTImageFromColorMap.getColorMap() |
JIPipeDataInfoRef |
GenerateZeroImage.getDataType() |
Strel3D.Shape |
GenerateStructureElement3DAlgorithm.getElement() |
Strel.Shape |
GenerateStructureElement2DAlgorithm.getElement() |
JIPipeExpressionParameter |
GenerateMissingImageFromMathExpression2D.getFunction() |
int |
GenerateZeroImage.getHeight() |
int |
GenerateLUTImageFromColorMap.getHeight() |
Matrix2DFloat |
ImageFromMatrix2DAlgorithm.getMatrix() |
OptionalIntegerParameter |
GenerateMissingImageFromMathExpression2D.getOverwriteHeight() |
OptionalIntegerParameter |
GenerateMissingZeroImage.getOverwriteHeight() |
OptionalBitDepth |
GenerateMissingImageFromMathExpression2D.getOverwriteOutputBitDepth() |
OptionalBitDepth |
GenerateMissingZeroImage.getOverwriteOutputBitDepth() |
OptionalIntegerParameter |
GenerateMissingImageFromMathExpression2D.getOverwriteSizeC() |
OptionalIntegerParameter |
GenerateMissingZeroImage.getOverwriteSizeC() |
OptionalIntegerParameter |
GenerateMissingImageFromMathExpression2D.getOverwriteSizeT() |
OptionalIntegerParameter |
GenerateMissingZeroImage.getOverwriteSizeT() |
OptionalIntegerParameter |
GenerateMissingImageFromMathExpression2D.getOverwriteSizeZ() |
OptionalIntegerParameter |
GenerateMissingZeroImage.getOverwriteSizeZ() |
OptionalIntegerParameter |
GenerateMissingImageFromMathExpression2D.getOverwriteWidth() |
OptionalIntegerParameter |
GenerateMissingZeroImage.getOverwriteWidth() |
ResultsTableData |
GenerateMissingTablesAlgorithm.getPlaceholderTable()
Deprecated.
|
ResultsTableData |
GenerateMissingTablesAlgorithm2.getPlaceholderTable() |
int |
GenerateStructureElement3DAlgorithm.getRadius() |
int |
GenerateStructureElement2DAlgorithm.getRadius() |
int |
GenerateZeroImage.getSizeC() |
int |
GenerateZeroImage.getSizeT() |
int |
GenerateZeroImage.getSizeZ() |
int |
GenerateZeroImage.getWidth() |
int |
GenerateLUTImageFromColorMap.getWidth() |
boolean |
GenerateMissingImageFromMathExpression2D.isGenerateOnePerBatch() |
boolean |
GenerateMissingZeroImage.isGenerateOnePerBatch() |
void |
GenerateLUTImageFromColorMap.setColorMap(ColorMap colorMap) |
void |
GenerateZeroImage.setDataType(JIPipeDataInfoRef dataType) |
void |
GenerateStructureElement2DAlgorithm.setElement(Strel.Shape element) |
void |
GenerateStructureElement3DAlgorithm.setElement(Strel3D.Shape element) |
void |
GenerateMissingImageFromMathExpression2D.setFunction(JIPipeExpressionParameter transformation) |
void |
GenerateMissingImageFromMathExpression2D.setGenerateOnePerBatch(boolean generateOnePerBatch) |
void |
GenerateMissingZeroImage.setGenerateOnePerBatch(boolean generateOnePerBatch) |
void |
GenerateZeroImage.setHeight(int height) |
void |
GenerateLUTImageFromColorMap.setHeight(int height) |
void |
ImageFromMatrix2DAlgorithm.setMatrix(Matrix2DFloat matrix) |
void |
GenerateMissingImageFromMathExpression2D.setOverwriteHeight(OptionalIntegerParameter overwriteHeight) |
void |
GenerateMissingZeroImage.setOverwriteHeight(OptionalIntegerParameter overwriteHeight) |
void |
GenerateMissingImageFromMathExpression2D.setOverwriteOutputBitDepth(OptionalBitDepth overwriteOutputBitDepth) |
void |
GenerateMissingZeroImage.setOverwriteOutputBitDepth(OptionalBitDepth overwriteOutputBitDepth) |
void |
GenerateMissingImageFromMathExpression2D.setOverwriteSizeC(OptionalIntegerParameter overwriteSizeC) |
void |
GenerateMissingZeroImage.setOverwriteSizeC(OptionalIntegerParameter overwriteSizeC) |
void |
GenerateMissingImageFromMathExpression2D.setOverwriteSizeT(OptionalIntegerParameter overwriteSizeT) |
void |
GenerateMissingZeroImage.setOverwriteSizeT(OptionalIntegerParameter overwriteSizeT) |
void |
GenerateMissingImageFromMathExpression2D.setOverwriteSizeZ(OptionalIntegerParameter overwriteSizeZ) |
void |
GenerateMissingZeroImage.setOverwriteSizeZ(OptionalIntegerParameter overwriteSizeZ) |
void |
GenerateMissingImageFromMathExpression2D.setOverwriteWidth(OptionalIntegerParameter overwriteWidth) |
void |
GenerateMissingZeroImage.setOverwriteWidth(OptionalIntegerParameter overwriteWidth) |
void |
GenerateMissingTablesAlgorithm.setPlaceholderTable(ResultsTableData placeholderTable)
Deprecated.
|
void |
GenerateMissingTablesAlgorithm2.setPlaceholderTable(ResultsTableData placeholderTable) |
void |
GenerateStructureElement3DAlgorithm.setRadius(int radius) |
void |
GenerateStructureElement2DAlgorithm.setRadius(int radius) |
void |
GenerateZeroImage.setSizeC(int sizeC) |
void |
GenerateZeroImage.setSizeT(int sizeT) |
void |
GenerateZeroImage.setSizeZ(int sizeZ) |
void |
GenerateZeroImage.setWidth(int width) |
void |
GenerateLUTImageFromColorMap.setWidth(int width) |
Modifier and Type | Method and Description |
---|---|
AVICompression |
ExportImageAlgorithm.getAviCompression()
Deprecated.
|
AVICompression |
ExportImageDirectorySlotAlgorithm.getAviCompression() |
AVICompression |
ExportImage2Algorithm.getAviCompression() |
JIPipeDataByMetadataExporter |
ExportImageAlgorithm.getExporter()
Deprecated.
|
JIPipeDataByMetadataExporter |
ExportROIAlgorithm.getExporter()
Deprecated.
|
JIPipeDataByMetadataExporter |
ExportImageDirectorySlotAlgorithm.getExporter() |
JIPipeDataByMetadataExporter |
ExportTableAlgorithm.getExporter()
Deprecated.
|
JIPipeDataByMetadataExporter |
ExportTableAsXLSXAlgorithm.getExporter()
Deprecated.
|
ImageJDataExporterRef |
RunImageJExporterAlgorithm.getExporterType() |
ImageJExportParameters |
RunImageJExporterAlgorithm.getExportParameters() |
ExportTableAlgorithm.FileFormat |
ExportTableAlgorithm2.getFileFormat() |
ExportImageAlgorithm.FileFormat |
ExportImageAlgorithm.getFileFormat()
Deprecated.
|
ExportImageAlgorithm.FileFormat |
ExportImageDirectorySlotAlgorithm.getFileFormat() |
ExportImageAlgorithm.FileFormat |
ExportImage2Algorithm.getFileFormat() |
ExportTableAlgorithm.FileFormat |
ExportTableAlgorithm.getFileFormat()
Deprecated.
|
DataExportExpressionParameter |
ExportTableAlgorithm2.getFilePath() |
DataExportExpressionParameter |
ExportImage2Algorithm.getFilePath() |
DataExportExpressionParameter |
ExportTableAsXLSXAlgorithm2.getFilePath() |
DataExportExpressionParameter |
ExportROIAlgorithm2.getFilePath() |
JIPipeExpressionParameter |
ImagePlusFromGUI.getImageFilters() |
LogicalOperation |
ImagePlusFromGUI.getImageFiltersOperation() |
ImageJDataImporterRef |
RunImageJImporterAlgorithm.getImporterType() |
ImageJImportParameters |
RunImageJImporterAlgorithm.getImportParameters() |
int |
ExportImageAlgorithm.getJpegQuality()
Deprecated.
|
int |
ExportImageDirectorySlotAlgorithm.getJpegQuality() |
int |
ExportImage2Algorithm.getJpegQuality() |
HyperstackDimension |
ExportImageAlgorithm.getMovieAnimatedDimension()
Deprecated.
|
HyperstackDimension |
ExportImageDirectorySlotAlgorithm.getMovieAnimatedDimension() |
HyperstackDimension |
ExportImage2Algorithm.getMovieAnimatedDimension() |
int |
ExportImageAlgorithm.getMovieFPS()
Deprecated.
|
int |
ExportImageDirectorySlotAlgorithm.getMovieFPS() |
int |
ExportImage2Algorithm.getMovieFPS() |
JIPipeExpressionParameter |
ExportTableAsXLSXAlgorithm2.getOrderExpression() |
JIPipeExpressionParameter |
ExportTableAsXLSXAlgorithm.getOrderExpression()
Deprecated.
|
Path |
ExportImageAlgorithm.getOutputDirectory()
Deprecated.
|
Path |
ExportROIAlgorithm.getOutputDirectory()
Deprecated.
|
Path |
ExportTableAlgorithm.getOutputDirectory()
Deprecated.
|
Path |
ExportTableAsXLSXAlgorithm.getOutputDirectory()
Deprecated.
|
JIPipeExpressionParameter |
ExportTableAsXLSXAlgorithm2.getSheetNameExpression() |
JIPipeExpressionParameter |
ExportTableAsXLSXAlgorithm.getSheetNameExpression()
Deprecated.
|
JIPipeExpressionParameter |
ResultsTableFromGUI.getTitleFilterExpression() |
boolean |
ExportROIAlgorithm.isExportAsROIFile()
Deprecated.
|
boolean |
ExportROIAlgorithm2.isExportAsROIFile() |
boolean |
ImagePlusFromGUI.isOnlyActiveImage() |
boolean |
ExportImageAlgorithm.isRelativeToProjectDir()
Deprecated.
|
boolean |
ExportROIAlgorithm.isRelativeToProjectDir()
Deprecated.
|
boolean |
ExportTableAlgorithm.isRelativeToProjectDir()
Deprecated.
|
boolean |
ExportTableAsXLSXAlgorithm.isRelativeToProjectDir()
Deprecated.
|
void |
ExportImageAlgorithm.setAviCompression(AVICompression aviCompression)
Deprecated.
|
void |
ExportImageDirectorySlotAlgorithm.setAviCompression(AVICompression aviCompression) |
void |
ExportImage2Algorithm.setAviCompression(AVICompression aviCompression) |
void |
ExportROIAlgorithm.setExportAsROIFile(boolean exportAsROIFile)
Deprecated.
|
void |
ExportROIAlgorithm2.setExportAsROIFile(boolean exportAsROIFile) |
void |
RunImageJExporterAlgorithm.setExporterType(ImageJDataExporterRef exporterType) |
void |
ExportImageAlgorithm.setFileFormat(ExportImageAlgorithm.FileFormat fileFormat)
Deprecated.
|
void |
ExportImageDirectorySlotAlgorithm.setFileFormat(ExportImageAlgorithm.FileFormat fileFormat) |
void |
ExportImage2Algorithm.setFileFormat(ExportImageAlgorithm.FileFormat fileFormat) |
void |
ExportTableAlgorithm2.setFileFormat(ExportTableAlgorithm.FileFormat fileFormat) |
void |
ExportTableAlgorithm.setFileFormat(ExportTableAlgorithm.FileFormat fileFormat)
Deprecated.
|
void |
ExportTableAlgorithm2.setFilePath(DataExportExpressionParameter filePath) |
void |
ExportImage2Algorithm.setFilePath(DataExportExpressionParameter filePath) |
void |
ExportTableAsXLSXAlgorithm2.setFilePath(DataExportExpressionParameter filePath) |
void |
ExportROIAlgorithm2.setFilePath(DataExportExpressionParameter filePath) |
void |
ImagePlusFromGUI.setImageFilters(JIPipeExpressionParameter imageFilters) |
void |
ImagePlusFromGUI.setImageFiltersOperation(LogicalOperation imageFiltersOperation) |
void |
RunImageJImporterAlgorithm.setImporterType(ImageJDataImporterRef importerType) |
boolean |
ExportImageAlgorithm.setJpegQuality(int jpegQuality)
Deprecated.
|
boolean |
ExportImageDirectorySlotAlgorithm.setJpegQuality(int jpegQuality) |
boolean |
ExportImage2Algorithm.setJpegQuality(int jpegQuality) |
void |
ExportImageAlgorithm.setMovieAnimatedDimension(HyperstackDimension movieAnimatedDimension)
Deprecated.
|
void |
ExportImageDirectorySlotAlgorithm.setMovieAnimatedDimension(HyperstackDimension movieAnimatedDimension) |
void |
ExportImage2Algorithm.setMovieAnimatedDimension(HyperstackDimension movieAnimatedDimension) |
void |
ExportImageAlgorithm.setMovieFPS(int movieFPS)
Deprecated.
|
void |
ExportImageDirectorySlotAlgorithm.setMovieFPS(int movieFPS) |
void |
ExportImage2Algorithm.setMovieFPS(int movieFPS) |
void |
ImagePlusFromGUI.setOnlyActiveImage(boolean onlyActiveImage) |
void |
ExportTableAsXLSXAlgorithm2.setOrderExpression(JIPipeExpressionParameter orderExpression) |
void |
ExportTableAsXLSXAlgorithm.setOrderExpression(JIPipeExpressionParameter orderExpression)
Deprecated.
|
void |
ExportImageAlgorithm.setOutputDirectory(Path outputDirectory)
Deprecated.
|
void |
ExportROIAlgorithm.setOutputDirectory(Path outputDirectory)
Deprecated.
|
void |
ExportTableAlgorithm.setOutputDirectory(Path outputDirectory)
Deprecated.
|
void |
ExportTableAsXLSXAlgorithm.setOutputDirectory(Path outputDirectory)
Deprecated.
|
void |
ExportImageAlgorithm.setRelativeToProjectDir(boolean relativeToProjectDir)
Deprecated.
|
void |
ExportROIAlgorithm.setRelativeToProjectDir(boolean relativeToProjectDir)
Deprecated.
|
void |
ExportTableAlgorithm.setRelativeToProjectDir(boolean relativeToProjectDir)
Deprecated.
|
void |
ExportTableAsXLSXAlgorithm.setRelativeToProjectDir(boolean relativeToProjectDir)
Deprecated.
|
void |
ExportTableAsXLSXAlgorithm2.setSheetNameExpression(JIPipeExpressionParameter sheetNameExpression) |
void |
ExportTableAsXLSXAlgorithm.setSheetNameExpression(JIPipeExpressionParameter sheetNameExpression)
Deprecated.
|
void |
ResultsTableFromGUI.setTitleFilterExpression(JIPipeExpressionParameter titleFilterExpression) |
Modifier and Type | Method and Description |
---|---|
Color |
LabelsToRGBAlgorithm.getBackgroundColor() |
int |
CropLabelsAlgorithm.getBorder() |
ColorMaps.CommonLabelMaps |
LabelsToRGBAlgorithm.getColorMap() |
Neighborhood2D |
LabelsToROIAlgorithm.getConnectivity() |
OptionalTextAnnotationNameParameter |
AnnotateWithOverlapMeasureLabelsAlgorithm.getDiceCoefficientAnnotation() |
OptionalTextAnnotationNameParameter |
AnnotateWithOverlapMeasureLabelsAlgorithm.getFalseNegativeErrorAnnotation() |
OptionalTextAnnotationNameParameter |
AnnotateWithOverlapMeasureLabelsAlgorithm.getFalsePositiveErrorAnnotation() |
OptionalTextAnnotationNameParameter |
AnnotateWithOverlapMeasureLabelsAlgorithm.getJaccardIndexAnnotation() |
OptionalTextAnnotationNameParameter |
CropLabelsAlgorithm.getLabelIdAnnotation() |
OptionalIntegerRange |
CropLabelsAlgorithm.getLabelIdLimit() |
OptionalTextAnnotationNameParameter |
SeparateLabelsAlgorithm.getLabelIndexAnnotation() |
JIPipeExpressionParameter |
LabelsToROIAlgorithm.getLabelNameExpression() |
double |
DilateLabelsAlgorithm.getMaxRadius() |
OverlapStatisticsSetParameter |
OverlapMeasureLabelsAlgorithm.getMeasurements() |
ImageStatisticsSetParameter |
ExtractLabelStatisticsAlgorithm.getMeasurements() |
LabelsToROIAlgorithm.Method |
LabelsToROIAlgorithm.getMethod() |
int |
MergeSmallLabelsAlgorithm.getMinimumNumberOfPixels() |
int |
MergeLabelsToThicknessAlgorithm.getMinThickness() |
OptionalJIPipeExpressionParameter |
ReplaceLabelsByTableAlgorithm.getMissingValueReplacement() |
TableColumnSourceExpressionParameter |
ReplaceLabelsByTableAlgorithm.getNewLabelColumn() |
int |
MergeLabelsToBinsAlgorithm.getNumBins() |
TableColumnSourceExpressionParameter |
ReplaceLabelsByTableAlgorithm.getOldLabelColumn() |
float |
ExpandLabelsAlgorithm.getRatio() |
IntRangeAndIntegerPairParameter.List |
ReplaceLabelsAlgorithm.getReplacements() |
SortOrder |
MergeLabelsToThicknessAlgorithm.getSortOrder() |
SortOrder |
MergeLabelsToBinsAlgorithm.getSortOrder() |
ImageROITargetArea |
MergeLabelsToThicknessAlgorithm.getSourceArea() |
ImageROITargetArea |
MergeSmallLabelsAlgorithm.getSourceArea() |
OptionalTextAnnotationNameParameter |
AnnotateWithOverlapMeasureLabelsAlgorithm.getTotalOverlapAnnotation() |
OptionalTextAnnotationNameParameter |
AnnotateWithOverlapMeasureLabelsAlgorithm.getVolumeSimilarityAnnotation() |
boolean |
MergeLabelsToBinsAlgorithm.isEqualizeFrequencies() |
boolean |
MergeLabelsToThicknessAlgorithm.isExcludeZero() |
boolean |
MergeSmallLabelsAlgorithm.isExcludeZero() |
boolean |
MergeLabelsToBinsAlgorithm.isExcludeZero() |
boolean |
ReplaceLabelsByTableAlgorithm.isIgnoreZero() |
boolean |
ExtractLabelStatisticsAlgorithm.isMeasureInPhysicalUnits() |
boolean |
MergeSmallLabelsAlgorithm.isMergeToLargerLabel() |
boolean |
LabelsToRGBAlgorithm.isShuffleLut() |
void |
LabelsToRGBAlgorithm.setBackgroundColor(Color backgroundColor) |
void |
CropLabelsAlgorithm.setBorder(int border) |
void |
LabelsToRGBAlgorithm.setColorMap(ColorMaps.CommonLabelMaps colorMap) |
void |
LabelsToROIAlgorithm.setConnectivity(Neighborhood2D connectivity) |
void |
AnnotateWithOverlapMeasureLabelsAlgorithm.setDiceCoefficientAnnotation(OptionalTextAnnotationNameParameter diceCoefficientAnnotation) |
void |
MergeLabelsToBinsAlgorithm.setEqualizeFrequencies(boolean equalizeFrequencies) |
void |
MergeLabelsToThicknessAlgorithm.setExcludeZero(boolean excludeZero) |
void |
MergeSmallLabelsAlgorithm.setExcludeZero(boolean excludeZero) |
void |
MergeLabelsToBinsAlgorithm.setExcludeZero(boolean excludeZero) |
void |
AnnotateWithOverlapMeasureLabelsAlgorithm.setFalseNegativeErrorAnnotation(OptionalTextAnnotationNameParameter falseNegativeErrorAnnotation) |
void |
AnnotateWithOverlapMeasureLabelsAlgorithm.setFalsePositiveErrorAnnotation(OptionalTextAnnotationNameParameter falsePositiveErrorAnnotation) |
void |
ReplaceLabelsByTableAlgorithm.setIgnoreZero(boolean ignoreZero) |
void |
AnnotateWithOverlapMeasureLabelsAlgorithm.setJaccardIndexAnnotation(OptionalTextAnnotationNameParameter jaccardIndexAnnotation) |
void |
CropLabelsAlgorithm.setLabelIdAnnotation(OptionalTextAnnotationNameParameter labelIdAnnotation) |
void |
CropLabelsAlgorithm.setLabelIdLimit(OptionalIntegerRange labelIdLimit) |
void |
SeparateLabelsAlgorithm.setLabelIndexAnnotation(OptionalTextAnnotationNameParameter labelIndexAnnotation) |
void |
LabelsToROIAlgorithm.setLabelNameExpression(JIPipeExpressionParameter labelNameExpression) |
void |
DilateLabelsAlgorithm.setMaxRadius(double maxRadius) |
void |
ExtractLabelStatisticsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits) |
void |
ExtractLabelStatisticsAlgorithm.setMeasurements(ImageStatisticsSetParameter measurements) |
void |
OverlapMeasureLabelsAlgorithm.setMeasurements(OverlapStatisticsSetParameter measurements) |
void |
MergeSmallLabelsAlgorithm.setMergeToLargerLabel(boolean mergeToLargerLabel) |
void |
LabelsToROIAlgorithm.setMethod(LabelsToROIAlgorithm.Method method) |
void |
MergeSmallLabelsAlgorithm.setMinimumNumberOfPixels(int minimumNumberOfPixels) |
void |
MergeLabelsToThicknessAlgorithm.setMinThickness(int minThickness) |
void |
ReplaceLabelsByTableAlgorithm.setMissingValueReplacement(OptionalJIPipeExpressionParameter missingValueReplacement) |
void |
ReplaceLabelsByTableAlgorithm.setNewLabelColumn(TableColumnSourceExpressionParameter newLabelColumn) |
void |
MergeLabelsToBinsAlgorithm.setNumBins(int numBins) |
void |
ReplaceLabelsByTableAlgorithm.setOldLabelColumn(TableColumnSourceExpressionParameter oldLabelColumn) |
void |
ExpandLabelsAlgorithm.setRatio(float ratio) |
void |
ReplaceLabelsAlgorithm.setReplacements(IntRangeAndIntegerPairParameter.List replacements) |
void |
LabelsToRGBAlgorithm.setShuffleLut(boolean shuffleLut) |
void |
MergeLabelsToThicknessAlgorithm.setSortOrder(SortOrder sortOrder) |
void |
MergeLabelsToBinsAlgorithm.setSortOrder(SortOrder sortOrder) |
void |
MergeLabelsToThicknessAlgorithm.setSourceArea(ImageROITargetArea sourceArea) |
void |
MergeSmallLabelsAlgorithm.setSourceArea(ImageROITargetArea sourceArea) |
void |
AnnotateWithOverlapMeasureLabelsAlgorithm.setTotalOverlapAnnotation(OptionalTextAnnotationNameParameter totalOverlapAnnotation) |
void |
AnnotateWithOverlapMeasureLabelsAlgorithm.setVolumeSimilarityAnnotation(OptionalTextAnnotationNameParameter volumeSimilarityAnnotation) |
Modifier and Type | Method and Description |
---|---|
float |
FilterLabelsByThicknessAlgorithm.getDeletedLabel() |
JIPipeExpressionParameter |
FilterLabelsByExpression2DAlgorithm.getExpression() |
JIPipeExpressionParameter |
FilterLabelsByExpression3DAlgorithm.getExpression() |
JIPipeExpressionParameter |
FilterLabelsByThicknessAlgorithm.getFilter() |
JIPipeExpressionParameter |
FilterLabelsByStatisticsAlgorithm.getFilters() |
int |
RemoveLargestLabelAlgorithm.getIterations() |
FilterLabelsByOverlapAlgorithm.LabelFilterSettings |
FilterLabelsByOverlapAlgorithm.getLabels1Settings() |
FilterLabelsByOverlapAlgorithm.LabelFilterSettings |
FilterLabelsByOverlapAlgorithm.getLabels2Settings() |
ImageStatisticsSetParameter |
FilterLabelsByStatisticsAlgorithm.getMeasurements() |
JIPipeExpressionParameter |
FilterLabelsByOverlapAlgorithm.LabelFilterSettings.getOverlapFilter() |
ImageStatisticsSetParameter |
FilterLabelsByOverlapAlgorithm.getOverlapFilterMeasurements() |
IntegerRange |
FilterLabelsByIdAlgorithm.getValues() |
boolean |
FilterLabelsByMaskAlgorithm.isDeleteMaskedLabels() |
boolean |
FilterLabelsByOverlapAlgorithm.LabelFilterSettings.isEnabled() |
boolean |
FilterLabelsByOverlapAlgorithm.LabelFilterSettings.isEnforceOverlap() |
boolean |
FilterLabelsByThicknessAlgorithm.isExcludeZero() |
boolean |
FilterLabelsByOverlapAlgorithm.LabelFilterSettings.isInvert() |
boolean |
FilterLabelsByIdAlgorithm.isKeepValues() |
boolean |
FilterLabelsByStatisticsAlgorithm.isMeasureInPhysicalUnits() |
boolean |
FilterLabelsByOverlapAlgorithm.LabelFilterSettings.isMeasureInPhysicalUnits() |
boolean |
FilterLabelsByOverlapAlgorithm.LabelFilterSettings.isOutputOverlaps() |
void |
FilterLabelsByThicknessAlgorithm.setDeletedLabel(float deletedLabel) |
void |
FilterLabelsByMaskAlgorithm.setDeleteMaskedLabels(boolean deleteMaskedLabels) |
void |
FilterLabelsByOverlapAlgorithm.LabelFilterSettings.setEnabled(boolean enabled) |
void |
FilterLabelsByOverlapAlgorithm.LabelFilterSettings.setEnforceOverlap(boolean enforceOverlap) |
void |
FilterLabelsByThicknessAlgorithm.setExcludeZero(boolean excludeZero) |
void |
FilterLabelsByExpression2DAlgorithm.setExpression(JIPipeExpressionParameter expression) |
void |
FilterLabelsByExpression3DAlgorithm.setExpression(JIPipeExpressionParameter expression) |
void |
FilterLabelsByThicknessAlgorithm.setFilter(JIPipeExpressionParameter filter) |
void |
FilterLabelsByStatisticsAlgorithm.setFilters(JIPipeExpressionParameter filters) |
void |
FilterLabelsByOverlapAlgorithm.LabelFilterSettings.setInvert(boolean invert) |
void |
RemoveLargestLabelAlgorithm.setIterations(int iterations) |
void |
FilterLabelsByIdAlgorithm.setKeepValues(boolean keepValues) |
void |
FilterLabelsByStatisticsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits) |
void |
FilterLabelsByOverlapAlgorithm.LabelFilterSettings.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits) |
void |
FilterLabelsByStatisticsAlgorithm.setMeasurements(ImageStatisticsSetParameter measurements) |
void |
FilterLabelsByOverlapAlgorithm.LabelFilterSettings.setOutputOverlaps(boolean outputOverlaps) |
void |
FilterLabelsByOverlapAlgorithm.LabelFilterSettings.setOverlapFilter(JIPipeExpressionParameter overlapFilter) |
void |
FilterLabelsByOverlapAlgorithm.setOverlapFilterMeasurements(ImageStatisticsSetParameter overlapFilterMeasurements) |
void |
FilterLabelsByIdAlgorithm.setValues(IntegerRange values) |
Modifier and Type | Method and Description |
---|---|
ColorMap |
SetLUTFromColorMapAlgorithm.getColorMap() |
Color |
SetLUTFromColorsAlgorithm.getFirstColor() |
OptionalIntegerRange |
SetLUTFromColorMapAlgorithm.getRestrictToChannels() |
OptionalIntegerRange |
RemoveLUTAlgorithm.getRestrictToChannels() |
OptionalIntegerRange |
SetLUTFromColorsAlgorithm.getRestrictToChannels() |
OptionalIntegerRange |
SetLUTFromImageAlgorithm.getRestrictToChannels() |
Color |
SetLUTFromColorsAlgorithm.getSecondColor() |
boolean |
LUTInverterAlgorithm.isApplyToAllPlanes() |
boolean |
SetLUTFromColorMapAlgorithm.isDuplicateImage() |
boolean |
RemoveLUTAlgorithm.isDuplicateImage() |
boolean |
SetLUTFromColorsAlgorithm.isDuplicateImage() |
boolean |
LUTInverterAlgorithm.isDuplicateImage() |
boolean |
SetLUTFromImageAlgorithm.isDuplicateImage() |
void |
LUTInverterAlgorithm.setApplyToAllPlanes(boolean applyToAllPlanes) |
void |
SetLUTFromColorMapAlgorithm.setColorMap(ColorMap colorMap) |
void |
SetLUTFromColorMapAlgorithm.setDuplicateImage(boolean duplicateImage) |
void |
RemoveLUTAlgorithm.setDuplicateImage(boolean duplicateImage) |
void |
SetLUTFromColorsAlgorithm.setDuplicateImage(boolean duplicateImage) |
void |
LUTInverterAlgorithm.setDuplicateImage(boolean duplicateImage) |
void |
SetLUTFromImageAlgorithm.setDuplicateImage(boolean duplicateImage) |
void |
SetLUTFromColorsAlgorithm.setFirstColor(Color firstColor) |
void |
SetLUTFromColorMapAlgorithm.setRestrictToChannels(OptionalIntegerRange restrictToChannels) |
void |
RemoveLUTAlgorithm.setRestrictToChannels(OptionalIntegerRange restrictToChannels) |
void |
SetLUTFromColorsAlgorithm.setRestrictToChannels(OptionalIntegerRange restrictToChannels) |
void |
SetLUTFromImageAlgorithm.setRestrictToChannels(OptionalIntegerRange restrictToChannels) |
void |
SetLUTFromColorsAlgorithm.setSecondColor(Color secondColor) |
Modifier and Type | Method and Description |
---|---|
HyperstackDimension |
ApplyVectorMathExpression2DAlgorithm.getComponentDimension() |
HyperstackDimension |
GenerateVectorFromMathExpression.getComponentDimension() |
int |
RoundFloatImageAlgorithm.getDecimals() |
EigenvalueSelection2D |
Hessian2DAlgorithm.getEigenvalueSelection2D() |
JIPipeExpressionParameter |
ImageCalculator2DExpression.getExpression() |
JIPipeExpressionParameter |
ApplyColorMathExpression2DExpression.getExpression() |
JIPipeExpressionParameter |
GenerateFromMathExpression2D.getFunction() |
JIPipeExpressionParameter |
GenerateVectorFromMathExpression.getFunction() |
int |
GenerateFromMathExpression2D.getHeight() |
int |
GenerateVectorFromMathExpression.getHeight() |
InputSlotMapParameterCollection |
ImageComparer2DAlgorithm.getOperands() |
InputSlotMapParameterCollection |
ImageCalculator2DAlgorithm.getOperands() |
ImageCalculator2DAlgorithm.Operation |
ImageCalculator2DMergingAlgorithm.getOperation() |
ImageComparer2DAlgorithm.Operation |
ImageComparer2DAlgorithm.getOperation() |
ImageCalculator2DAlgorithm.Operation |
ImageCalculator2DAlgorithm.getOperation() |
JIPipeDataInfoRef |
ApplyColorMathExpression2DExpression.getOutputType() |
int |
ApplyVectorMathExpression2DAlgorithm.getOutputVectorSize() |
double |
RemoveNaNFilter2DAlgorithm.getRadius() |
int |
GenerateFromMathExpression2D.getSizeC() |
int |
GenerateVectorFromMathExpression.getSizeC() |
int |
GenerateFromMathExpression2D.getSizeT() |
int |
GenerateVectorFromMathExpression.getSizeT() |
int |
GenerateFromMathExpression2D.getSizeZ() |
int |
GenerateVectorFromMathExpression.getSizeZ() |
double |
Hessian2DAlgorithm.getSmoothing() |
ApplyTransform2DAlgorithm.Transformation |
ApplyTransform2DAlgorithm.getTransformation() |
JIPipeExpressionParameter |
ApplyVectorMathExpression2DAlgorithm.getTransformation() |
ApplyMath2DAlgorithm.Transformation |
ApplyMath2DAlgorithm.getTransformation() |
JIPipeExpressionParameter |
ApplyMathExpression2DAlgorithm.getTransformation() |
double |
ApplyMath2DAlgorithm.getValue() |
int |
GenerateFromMathExpression2D.getWidth() |
int |
GenerateVectorFromMathExpression.getWidth() |
boolean |
Hessian2DAlgorithm.isCompareAbsolute() |
boolean |
ImageCalculator2DMergingAlgorithm.isFloatingPointOutput() |
boolean |
ImageCalculator2DAlgorithm.isFloatingPointOutput() |
boolean |
ImageComparer2DAlgorithm.isInvert() |
boolean |
DivideByMaximumAlgorithm.isRecalibrate() |
void |
Hessian2DAlgorithm.setCompareAbsolute(boolean compareAbsolute) |
void |
ApplyVectorMathExpression2DAlgorithm.setComponentDimension(HyperstackDimension componentDimension) |
void |
GenerateVectorFromMathExpression.setComponentDimension(HyperstackDimension componentDimension) |
void |
RoundFloatImageAlgorithm.setDecimals(int decimals) |
void |
Hessian2DAlgorithm.setEigenvalueSelection2D(EigenvalueSelection2D eigenvalueSelection2D) |
void |
ImageCalculator2DExpression.setExpression(JIPipeExpressionParameter expression) |
void |
ApplyColorMathExpression2DExpression.setExpression(JIPipeExpressionParameter expression) |
void |
ImageCalculator2DMergingAlgorithm.setFloatingPointOutput(boolean floatingPointOutput) |
void |
ImageCalculator2DAlgorithm.setFloatingPointOutput(boolean floatingPointOutput) |
void |
GenerateFromMathExpression2D.setFunction(JIPipeExpressionParameter transformation) |
void |
GenerateVectorFromMathExpression.setFunction(JIPipeExpressionParameter transformation) |
void |
GenerateFromMathExpression2D.setHeight(int height) |
void |
GenerateVectorFromMathExpression.setHeight(int height) |
void |
ImageComparer2DAlgorithm.setInvert(boolean invert) |
void |
ImageCalculator2DMergingAlgorithm.setOperation(ImageCalculator2DAlgorithm.Operation operation) |
void |
ImageCalculator2DAlgorithm.setOperation(ImageCalculator2DAlgorithm.Operation operation) |
void |
ImageComparer2DAlgorithm.setOperation(ImageComparer2DAlgorithm.Operation operation) |
void |
ApplyColorMathExpression2DExpression.setOutputType(JIPipeDataInfoRef outputType) |
void |
ApplyVectorMathExpression2DAlgorithm.setOutputVectorSize(int outputVectorSize) |
boolean |
RemoveNaNFilter2DAlgorithm.setRadius(double radius) |
void |
DivideByMaximumAlgorithm.setRecalibrate(boolean recalibrate) |
void |
GenerateFromMathExpression2D.setSizeC(int sizeC) |
void |
GenerateVectorFromMathExpression.setSizeC(int sizeC) |
void |
GenerateFromMathExpression2D.setSizeT(int sizeT) |
void |
GenerateVectorFromMathExpression.setSizeT(int sizeT) |
void |
GenerateFromMathExpression2D.setSizeZ(int sizeZ) |
void |
GenerateVectorFromMathExpression.setSizeZ(int sizeZ) |
void |
Hessian2DAlgorithm.setSmoothing(double smoothing) |
void |
ApplyMath2DAlgorithm.setTransformation(ApplyMath2DAlgorithm.Transformation transformation) |
void |
ApplyTransform2DAlgorithm.setTransformation(ApplyTransform2DAlgorithm.Transformation transformation) |
void |
ApplyVectorMathExpression2DAlgorithm.setTransformation(JIPipeExpressionParameter transformation) |
void |
ApplyMathExpression2DAlgorithm.setTransformation(JIPipeExpressionParameter transformation) |
void |
ApplyMath2DAlgorithm.setValue(double value) |
void |
GenerateFromMathExpression2D.setWidth(int width) |
void |
GenerateVectorFromMathExpression.setWidth(int width) |
Modifier and Type | Method and Description |
---|---|
int |
ApplyDistanceTransform2DAlgorithm.getBackgroundValue() |
ChamferWeights3D |
LabelChamferDistanceMap3DAlgorithm.getChamferWeights() |
ChamferWeights |
ChamferDistanceMap2DAlgorithm.getChamferWeights() |
ChamferWeights3D |
ChamferDistanceMap3DAlgorithm.getChamferWeights() |
ChamferWeights |
GeodesicDistanceMap2DAlgorithm.getChamferWeights() |
JIPipeDataInfoRef |
LabelChamferDistanceMap3DAlgorithm.getOutputType() |
JIPipeDataInfoRef |
ChamferDistanceMap2DAlgorithm.getOutputType() |
JIPipeDataInfoRef |
ChamferDistanceMap3DAlgorithm.getOutputType() |
JIPipeDataInfoRef |
GeodesicDistanceMap2DAlgorithm.getOutputType() |
boolean |
ApplyDistanceTransform2DAlgorithm.isEdgesAreBackground() |
boolean |
LabelChamferDistanceMap3DAlgorithm.isNormalize() |
boolean |
ChamferDistanceMap2DAlgorithm.isNormalize() |
boolean |
ChamferDistanceMap3DAlgorithm.isNormalize() |
boolean |
GeodesicDistanceMap2DAlgorithm.isNormalize() |
void |
ApplyDistanceTransform2DAlgorithm.setBackgroundValue(int backgroundValue) |
void |
ChamferDistanceMap2DAlgorithm.setChamferWeights(ChamferWeights chamferWeights) |
void |
GeodesicDistanceMap2DAlgorithm.setChamferWeights(ChamferWeights chamferWeights) |
void |
LabelChamferDistanceMap3DAlgorithm.setChamferWeights(ChamferWeights3D chamferWeights) |
void |
ChamferDistanceMap3DAlgorithm.setChamferWeights(ChamferWeights3D chamferWeights) |
void |
ApplyDistanceTransform2DAlgorithm.setEdgesAreBackground(boolean edgesAreBackground) |
void |
LabelChamferDistanceMap3DAlgorithm.setNormalize(boolean normalize) |
void |
ChamferDistanceMap2DAlgorithm.setNormalize(boolean normalize) |
void |
ChamferDistanceMap3DAlgorithm.setNormalize(boolean normalize) |
void |
GeodesicDistanceMap2DAlgorithm.setNormalize(boolean normalize) |
void |
LabelChamferDistanceMap3DAlgorithm.setOutputType(JIPipeDataInfoRef outputType) |
void |
ChamferDistanceMap2DAlgorithm.setOutputType(JIPipeDataInfoRef outputType) |
void |
ChamferDistanceMap3DAlgorithm.setOutputType(JIPipeDataInfoRef outputType) |
void |
GeodesicDistanceMap2DAlgorithm.setOutputType(JIPipeDataInfoRef outputType) |
Modifier and Type | Method and Description |
---|---|
Neighborhood2D |
ExtendedMinima2DAlgorithm.getConnectivity() |
Neighborhood3D |
ExtendedMinima3DAlgorithm.getConnectivity() |
Neighborhood2D |
RegionalMinima2DAlgorithm.getConnectivity() |
Neighborhood3D |
ExtendedMaxima3DAlgorithm.getConnectivity() |
Neighborhood3D |
RegionalMaxima3DAlgorithm.getConnectivity() |
Neighborhood3D |
RegionalMinima3DAlgorithm.getConnectivity() |
Neighborhood2D |
RegionalMaxima2DAlgorithm.getConnectivity() |
Neighborhood2D |
ExtendedMaxima2DAlgorithm.getConnectivity() |
double |
ExtendedMinima2DAlgorithm.getDynamic() |
double |
ExtendedMinima3DAlgorithm.getDynamic() |
double |
ExtendedMaxima3DAlgorithm.getDynamic() |
double |
ExtendedMaxima2DAlgorithm.getDynamic() |
JIPipeExpressionParameter |
LocalImageCalculator2DExpression.getExpression() |
int |
LocalImageCalculator2DExpression.getLocalWindowHeight() |
int |
LocalImageCalculator2DExpression.getLocalWindowWidth() |
double |
LocalMinimumFilter2DAlgorithm.getRadius() |
double |
LocalVarianceFilter2DAlgorithm.getRadius() |
double |
LocalMaximumFilter2DAlgorithm.getRadius() |
float |
LocalMinimumFilter3DAlgorithm.getRadiusX() |
float |
LocalVarianceFilter3DAlgorithm.getRadiusX() |
float |
LocalMaximumFilter3DAlgorithm.getRadiusX() |
float |
LocalMinimumFilter3DAlgorithm.getRadiusY() |
float |
LocalVarianceFilter3DAlgorithm.getRadiusY() |
float |
LocalMaximumFilter3DAlgorithm.getRadiusY() |
float |
LocalMinimumFilter3DAlgorithm.getRadiusZ() |
float |
LocalVarianceFilter3DAlgorithm.getRadiusZ() |
float |
LocalMaximumFilter3DAlgorithm.getRadiusZ() |
SourceWrapMode |
LocalImageCalculator2DExpression.getSourceWrapMode() |
void |
ExtendedMinima2DAlgorithm.setConnectivity(Neighborhood2D connectivity) |
void |
RegionalMinima2DAlgorithm.setConnectivity(Neighborhood2D connectivity) |
void |
RegionalMaxima2DAlgorithm.setConnectivity(Neighborhood2D connectivity) |
void |
ExtendedMaxima2DAlgorithm.setConnectivity(Neighborhood2D connectivity) |
void |
ExtendedMinima3DAlgorithm.setConnectivity(Neighborhood3D connectivity) |
void |
ExtendedMaxima3DAlgorithm.setConnectivity(Neighborhood3D connectivity) |
void |
RegionalMaxima3DAlgorithm.setConnectivity(Neighborhood3D connectivity) |
void |
RegionalMinima3DAlgorithm.setConnectivity(Neighborhood3D connectivity) |
void |
ExtendedMinima2DAlgorithm.setDynamic(double dynamic) |
void |
ExtendedMinima3DAlgorithm.setDynamic(double dynamic) |
void |
ExtendedMaxima3DAlgorithm.setDynamic(double dynamic) |
void |
ExtendedMaxima2DAlgorithm.setDynamic(double dynamic) |
void |
LocalImageCalculator2DExpression.setExpression(JIPipeExpressionParameter expression) |
void |
LocalImageCalculator2DExpression.setLocalWindowHeight(int localWindowHeight) |
void |
LocalImageCalculator2DExpression.setLocalWindowWidth(int localWindowWidth) |
boolean |
LocalMinimumFilter2DAlgorithm.setRadius(double radius) |
boolean |
LocalVarianceFilter2DAlgorithm.setRadius(double radius) |
boolean |
LocalMaximumFilter2DAlgorithm.setRadius(double radius) |
void |
LocalMinimumFilter3DAlgorithm.setRadiusX(float radiusX) |
void |
LocalVarianceFilter3DAlgorithm.setRadiusX(float radiusX) |
void |
LocalMaximumFilter3DAlgorithm.setRadiusX(float radiusX) |
void |
LocalMinimumFilter3DAlgorithm.setRadiusY(float radiusY) |
void |
LocalVarianceFilter3DAlgorithm.setRadiusY(float radiusY) |
void |
LocalMaximumFilter3DAlgorithm.setRadiusY(float radiusY) |
void |
LocalMinimumFilter3DAlgorithm.setRadiusZ(float radiusZ) |
void |
LocalVarianceFilter3DAlgorithm.setRadiusZ(float radiusZ) |
void |
LocalMaximumFilter3DAlgorithm.setRadiusZ(float radiusZ) |
void |
LocalImageCalculator2DExpression.setSourceWrapMode(SourceWrapMode sourceWrapMode) |
Modifier and Type | Method and Description |
---|---|
JIPipeExpressionParameter |
RemoveImageMetadataAlgorithm.getFilterExpression() |
OptionalJIPipeExpressionParameter |
ChangeImageMetadataFromExpressionsAlgorithm.getImageTitle() |
boolean |
SetImageMetadataFromTableAlgorithm.isClearBeforeWrite() |
void |
SetImageMetadataFromTableAlgorithm.setClearBeforeWrite(boolean clearBeforeWrite) |
void |
RemoveImageMetadataAlgorithm.setFilterExpression(JIPipeExpressionParameter filterExpression) |
void |
ChangeImageMetadataFromExpressionsAlgorithm.setImageTitle(OptionalJIPipeExpressionParameter imageTitle) |
Modifier and Type | Method and Description |
---|---|
int |
DataToPreviewAlgorithm.getPreviewHeight() |
int |
DataToPreviewAlgorithm.getPreviewWidth() |
RenderPipelineRunSettings |
RenderJIPipeProjectAlgorithm.getSettings() |
void |
DataToPreviewAlgorithm.setPreviewHeight(int previewHeight) |
void |
DataToPreviewAlgorithm.setPreviewWidth(int previewWidth) |
Modifier and Type | Method and Description |
---|---|
Color |
InputImagesToMontage.getBackgroundColor()
Deprecated.
|
Color |
StackToMontageAlgorithm.getBackgroundColor()
Deprecated.
|
int |
MontageToStackAlgorithm.getBorderWidth() |
int |
InputImagesToMontage.getBorderWidth()
Deprecated.
|
int |
StackToMontageAlgorithm.getBorderWidth()
Deprecated.
|
CanvasEqualizer |
InputImagesToMontage.getCanvasEqualizer()
Deprecated.
|
int |
MontageToStackAlgorithm.getColumns() |
OptionalIntegerParameter |
InputImagesToMontage.getColumns()
Deprecated.
|
OptionalIntegerParameter |
StackToMontageAlgorithm.getColumns()
Deprecated.
|
OptionalIntegerParameter |
StackToMontageAlgorithm.getFirstIndex()
Deprecated.
|
int |
InputImagesToMontage.getFontSize()
Deprecated.
|
int |
StackToMontageAlgorithm.getFontSize()
Deprecated.
|
Color |
InputImagesToMontage.getForegroundColor()
Deprecated.
|
Color |
StackToMontageAlgorithm.getForegroundColor()
Deprecated.
|
int |
StackToMontageAlgorithm.getIndexIncrement()
Deprecated.
|
JIPipeDataByMetadataExporter |
InputImagesToMontage.getLabelGenerator()
Deprecated.
|
OptionalIntegerParameter |
StackToMontageAlgorithm.getLastIndex()
Deprecated.
|
MontageCreator |
InputImagesToMontage2.getMontageCreator() |
MontageCreator |
StackToMontage2Algorithm.getMontageCreator() |
int |
MontageToStackAlgorithm.getRows() |
OptionalIntegerParameter |
InputImagesToMontage.getRows()
Deprecated.
|
OptionalIntegerParameter |
StackToMontageAlgorithm.getRows()
Deprecated.
|
double |
InputImagesToMontage.getScale()
Deprecated.
|
double |
StackToMontageAlgorithm.getScale()
Deprecated.
|
JIPipeExpressionParameter |
StackToMontage2Algorithm.getSliceFilter() |
JIPipeDataByMetadataExporter |
InputImagesToMontage.getSortingLabelGenerator()
Deprecated.
|
boolean |
InputImagesToMontage.isDrawLabels()
Deprecated.
|
boolean |
StackToMontageAlgorithm.isLabels()
Deprecated.
|
void |
InputImagesToMontage.setBackgroundColor(Color backgroundColor)
Deprecated.
|
void |
StackToMontageAlgorithm.setBackgroundColor(Color backgroundColor)
Deprecated.
|
void |
MontageToStackAlgorithm.setBorderWidth(int borderWidth) |
void |
InputImagesToMontage.setBorderWidth(int borderWidth)
Deprecated.
|
void |
StackToMontageAlgorithm.setBorderWidth(int borderWidth)
Deprecated.
|
void |
MontageToStackAlgorithm.setColumns(int columns) |
void |
InputImagesToMontage.setColumns(OptionalIntegerParameter columns)
Deprecated.
|
void |
StackToMontageAlgorithm.setColumns(OptionalIntegerParameter columns)
Deprecated.
|
void |
InputImagesToMontage.setDrawLabels(boolean drawLabels)
Deprecated.
|
void |
StackToMontageAlgorithm.setFirstIndex(OptionalIntegerParameter firstIndex)
Deprecated.
|
void |
InputImagesToMontage.setFontSize(int fontSize)
Deprecated.
|
void |
StackToMontageAlgorithm.setFontSize(int fontSize)
Deprecated.
|
void |
InputImagesToMontage.setForegroundColor(Color foregroundColor)
Deprecated.
|
void |
StackToMontageAlgorithm.setForegroundColor(Color foregroundColor)
Deprecated.
|
void |
StackToMontageAlgorithm.setIndexIncrement(int indexIncrement)
Deprecated.
|
void |
StackToMontageAlgorithm.setLabels(boolean labels)
Deprecated.
|
void |
StackToMontageAlgorithm.setLastIndex(OptionalIntegerParameter lastIndex)
Deprecated.
|
void |
MontageToStackAlgorithm.setRows(int rows) |
void |
InputImagesToMontage.setRows(OptionalIntegerParameter rows)
Deprecated.
|
void |
StackToMontageAlgorithm.setRows(OptionalIntegerParameter rows)
Deprecated.
|
void |
InputImagesToMontage.setScale(double scale)
Deprecated.
|
void |
StackToMontageAlgorithm.setScale(double scale)
Deprecated.
|
void |
StackToMontage2Algorithm.setSliceFilter(JIPipeExpressionParameter sliceFilter) |
Modifier and Type | Method and Description |
---|---|
AddBorder2DAlgorithm |
Morphology2DAlgorithm.getAddBorder2DAlgorithm() |
GrayscaleAttributeFiltering2DAlgorithm.Attribute |
GrayscaleAttributeFiltering2DAlgorithm.getAttribute() |
GrayscaleAttributeFiltering3DAlgorithm.Attribute |
GrayscaleAttributeFiltering3DAlgorithm.getAttribute() |
Neighborhood2D |
MorphologicalReconstruction3DAlgorithm.getConnectivity() |
Neighborhood2D |
MorphologicalReconstruction2DAlgorithm.getConnectivity() |
Neighborhood2D |
GrayscaleAttributeFiltering2DAlgorithm.getConnectivity() |
Neighborhood3D |
GrayscaleAttributeFiltering3DAlgorithm.getConnectivity() |
Strel3D.Shape |
Morphology3DAlgorithm.getElement() |
Strel.Shape |
Morphology2DAlgorithm.getElement() |
int |
MorphologyBinary2DAlgorithm.getIterations() |
int |
GrayscaleAttributeFiltering2DAlgorithm.getMinimumValue() |
int |
GrayscaleAttributeFiltering3DAlgorithm.getMinVoxelNumber() |
Morphology.Operation |
Morphology3DAlgorithm.getOperation() |
MorphologyBinary2DAlgorithm.Operation |
MorphologyBinary2DAlgorithm.getOperation() |
GrayscaleAttributeFiltering2DAlgorithm.Operation |
GrayscaleAttributeFiltering2DAlgorithm.getOperation() |
Morphology.Operation |
Morphology2DAlgorithm.getOperation() |
GrayscaleAttributeFiltering3DAlgorithm.Operation |
GrayscaleAttributeFiltering3DAlgorithm.getOperation() |
int |
Morphology3DAlgorithm.getRadius() |
double |
MorphologyInternalGradient2DAlgorithm.getRadius() |
int |
Morphology2DAlgorithm.getRadius() |
boolean |
Morphology2DAlgorithm.isAddBorder() |
boolean |
MorphologicalReconstruction3DAlgorithm.isApplyDilation() |
boolean |
MorphologicalReconstruction2DAlgorithm.isApplyDilation() |
boolean |
FindHoles2DAlgorithm.isBlackBackground() |
boolean |
MorphologyFillHoles2DAlgorithm.isBlackBackground() |
boolean |
MorphologySkeletonize2DAlgorithm.isDarkBackground() |
void |
Morphology2DAlgorithm.setAddBorder(boolean addBorder) |
void |
MorphologicalReconstruction3DAlgorithm.setApplyDilation(boolean applyDilation) |
void |
MorphologicalReconstruction2DAlgorithm.setApplyDilation(boolean applyDilation) |
void |
GrayscaleAttributeFiltering2DAlgorithm.setAttribute(GrayscaleAttributeFiltering2DAlgorithm.Attribute attribute) |
void |
GrayscaleAttributeFiltering3DAlgorithm.setAttribute(GrayscaleAttributeFiltering3DAlgorithm.Attribute attribute) |
void |
FindHoles2DAlgorithm.setBlackBackground(boolean blackBackground) |
void |
MorphologyFillHoles2DAlgorithm.setBlackBackground(boolean blackBackground) |
void |
MorphologicalReconstruction3DAlgorithm.setConnectivity(Neighborhood2D connectivity) |
void |
MorphologicalReconstruction2DAlgorithm.setConnectivity(Neighborhood2D connectivity) |
void |
GrayscaleAttributeFiltering2DAlgorithm.setConnectivity(Neighborhood2D connectivity) |
void |
GrayscaleAttributeFiltering3DAlgorithm.setConnectivity(Neighborhood3D connectivity) |
void |
MorphologySkeletonize2DAlgorithm.setDarkBackground(boolean darkBackground) |
void |
Morphology2DAlgorithm.setElement(Strel.Shape element) |
void |
Morphology3DAlgorithm.setElement(Strel3D.Shape element) |
void |
MorphologyBinary2DAlgorithm.setIterations(int iterations) |
void |
GrayscaleAttributeFiltering2DAlgorithm.setMinimumValue(int minimumValue) |
void |
GrayscaleAttributeFiltering3DAlgorithm.setMinVoxelNumber(int minVoxelNumber) |
void |
GrayscaleAttributeFiltering2DAlgorithm.setOperation(GrayscaleAttributeFiltering2DAlgorithm.Operation operation) |
void |
GrayscaleAttributeFiltering3DAlgorithm.setOperation(GrayscaleAttributeFiltering3DAlgorithm.Operation operation) |
void |
Morphology3DAlgorithm.setOperation(Morphology.Operation operation) |
void |
Morphology2DAlgorithm.setOperation(Morphology.Operation operation) |
void |
MorphologyBinary2DAlgorithm.setOperation(MorphologyBinary2DAlgorithm.Operation operation) |
void |
MorphologyInternalGradient2DAlgorithm.setRadius(double radius) |
void |
Morphology3DAlgorithm.setRadius(int radius) |
void |
Morphology2DAlgorithm.setRadius(int radius) |
Modifier and Type | Method and Description |
---|---|
RemoveOutliersFilter2DAlgorithm.Mode |
RemoveOutliersFilter2DAlgorithm.getMode() |
double |
AddSaltAndPepperNoise2DAlgorithm.getPercent() |
double |
RemoveOutliersFilter2DAlgorithm.getRadius() |
double |
AddNoise2DAlgorithm.getSigma() |
float |
RemoveOutliersFilter2DAlgorithm.getThreshold() |
void |
RemoveOutliersFilter2DAlgorithm.setMode(RemoveOutliersFilter2DAlgorithm.Mode mode) |
void |
AddSaltAndPepperNoise2DAlgorithm.setPercent(double percent) |
boolean |
RemoveOutliersFilter2DAlgorithm.setRadius(double radius) |
void |
AddNoise2DAlgorithm.setSigma(double sigma) |
boolean |
RemoveOutliersFilter2DAlgorithm.setThreshold(float threshold) |
Modifier and Type | Method and Description |
---|---|
OMEAccessorParameter |
AnnotateOMEWithMetadataAlgorithm.Entry.getAccessor() |
OMEAccessorParameter |
OMEMetadataToTableAlgorithm.Entry.getAccessor() |
JIPipeTextAnnotationMergeMode |
AnnotateOMEWithMetadataAlgorithm.getAnnotationMergeMode() |
JIPipeExpressionParameter |
AnnotateOMEWithMetadataAlgorithm.Entry.getAnnotationName() |
JIPipeExpressionParameter |
OMEMetadataToTableAlgorithm.Entry.getColumnName() |
ParameterCollectionList |
AnnotateOMEWithMetadataAlgorithm.getEntries() |
ParameterCollectionList |
OMEMetadataToTableAlgorithm.getEntries() |
void |
AnnotateOMEWithMetadataAlgorithm.Entry.setAccessor(OMEAccessorParameter accessor) |
void |
OMEMetadataToTableAlgorithm.Entry.setAccessor(OMEAccessorParameter accessor) |
void |
AnnotateOMEWithMetadataAlgorithm.setAnnotationMergeMode(JIPipeTextAnnotationMergeMode annotationMergeMode) |
void |
AnnotateOMEWithMetadataAlgorithm.Entry.setAnnotationName(JIPipeExpressionParameter annotationName) |
void |
OMEMetadataToTableAlgorithm.Entry.setColumnName(JIPipeExpressionParameter columnName) |
void |
AnnotateOMEWithMetadataAlgorithm.setEntries(ParameterCollectionList entries) |
void |
OMEMetadataToTableAlgorithm.setEntries(ParameterCollectionList entries) |
Modifier and Type | Method and Description |
---|---|
int |
PMCCBlockFlowAlgorithm.getBlockRadius() |
int |
MSEBlockFlowAlgorithm.getBlockRadius() |
int |
MSEGaussianFlowAlgorithm.getMaxDistance() |
int |
PMCCBlockFlowAlgorithm.getMaxDistance() |
int |
MSEBlockFlowAlgorithm.getMaxDistance() |
int |
MSEGaussianFlowAlgorithm.getSigma() |
boolean |
MSEGaussianFlowAlgorithm.isAddLastIdentityField() |
boolean |
PMCCBlockFlowAlgorithm.isAddLastIdentityField() |
boolean |
MSEBlockFlowAlgorithm.isAddLastIdentityField() |
boolean |
MSEGaussianFlowAlgorithm.isOutputPolarCoordinates() |
boolean |
PMCCBlockFlowAlgorithm.isOutputPolarCoordinates() |
boolean |
MSEBlockFlowAlgorithm.isOutputPolarCoordinates() |
boolean |
MSEGaussianFlowAlgorithm.isRelativeDistances() |
boolean |
PMCCBlockFlowAlgorithm.isRelativeDistances() |
boolean |
MSEBlockFlowAlgorithm.isRelativeDistances() |
void |
MSEGaussianFlowAlgorithm.setAddLastIdentityField(boolean addLastIdentityField) |
void |
PMCCBlockFlowAlgorithm.setAddLastIdentityField(boolean addLastIdentityField) |
void |
MSEBlockFlowAlgorithm.setAddLastIdentityField(boolean addLastIdentityField) |
boolean |
MSEGaussianFlowAlgorithm.setBlockRadius(int blockRadius) |
boolean |
PMCCBlockFlowAlgorithm.setBlockRadius(int blockRadius) |
boolean |
MSEBlockFlowAlgorithm.setBlockRadius(int blockRadius) |
boolean |
MSEGaussianFlowAlgorithm.setMaxDistance(int maxDistance) |
boolean |
PMCCBlockFlowAlgorithm.setMaxDistance(int maxDistance) |
boolean |
MSEBlockFlowAlgorithm.setMaxDistance(int maxDistance) |
void |
MSEGaussianFlowAlgorithm.setOutputPolarCoordinates(boolean outputPolarCoordinates) |
void |
PMCCBlockFlowAlgorithm.setOutputPolarCoordinates(boolean outputPolarCoordinates) |
void |
MSEBlockFlowAlgorithm.setOutputPolarCoordinates(boolean outputPolarCoordinates) |
void |
MSEGaussianFlowAlgorithm.setRelativeDistances(boolean relativeDistances) |
void |
PMCCBlockFlowAlgorithm.setRelativeDistances(boolean relativeDistances) |
void |
MSEBlockFlowAlgorithm.setRelativeDistances(boolean relativeDistances) |
Modifier and Type | Method and Description |
---|---|
ROIElementDrawingMode |
RenderOverlayAlgorithm.getDrawFilledOutlineMode() |
RoiLabel |
RenderOverlayAlgorithm.getDrawnLabel() |
ROIElementDrawingMode |
RenderOverlayAlgorithm.getDrawOutlineMode() |
OptionalColorParameter |
RenderOverlayAlgorithm.getLabelBackground() |
Color |
RenderOverlayAlgorithm.getLabelForeground() |
int |
RenderOverlayAlgorithm.getLabelSize() |
double |
RenderOverlayAlgorithm.getMagnification() |
double |
RenderOverlayAlgorithm.getOpacity() |
OptionalColorParameter |
RenderOverlayAlgorithm.getOverrideFillColor() |
OptionalColorParameter |
RenderOverlayAlgorithm.getOverrideLineColor() |
OptionalDoubleParameter |
RenderOverlayAlgorithm.getOverrideLineWidth() |
boolean |
RenderOverlayAlgorithm.isIgnoreC() |
boolean |
RenderOverlayAlgorithm.isIgnoreT() |
boolean |
RenderOverlayAlgorithm.isIgnoreZ() |
boolean |
RenderOverlayAlgorithm.isPreferRenderViaOverlay() |
void |
RenderOverlayAlgorithm.setDrawFilledOutlineMode(ROIElementDrawingMode drawFilledOutlineMode) |
void |
RenderOverlayAlgorithm.setDrawnLabel(RoiLabel drawnLabel) |
void |
RenderOverlayAlgorithm.setDrawOutlineMode(ROIElementDrawingMode drawOutlineMode) |
void |
RenderOverlayAlgorithm.setIgnoreC(boolean ignoreC) |
void |
RenderOverlayAlgorithm.setIgnoreT(boolean ignoreT) |
void |
RenderOverlayAlgorithm.setIgnoreZ(boolean ignoreZ) |
void |
RenderOverlayAlgorithm.setLabelBackground(OptionalColorParameter labelBackground) |
void |
RenderOverlayAlgorithm.setLabelForeground(Color labelForeground) |
boolean |
RenderOverlayAlgorithm.setLabelSize(int labelSize) |
void |
RenderOverlayAlgorithm.setMagnification(double magnification) |
boolean |
RenderOverlayAlgorithm.setOpacity(double opacity) |
void |
RenderOverlayAlgorithm.setOverrideFillColor(OptionalColorParameter overrideFillColor) |
void |
RenderOverlayAlgorithm.setOverrideLineColor(OptionalColorParameter overrideLineColor) |
void |
RenderOverlayAlgorithm.setOverrideLineWidth(OptionalDoubleParameter overrideLineWidth) |
void |
RenderOverlayAlgorithm.setPreferRenderViaOverlay(boolean preferRenderViaOverlay) |
Modifier and Type | Method and Description |
---|---|
OptionalTextAnnotationNameParameter |
ExtractImageInRoiAlgorithm.getAnnotationCLocation() |
OptionalTextAnnotationNameParameter |
ExtractImageInRoiAlgorithm.getAnnotationTLocation() |
OptionalTextAnnotationNameParameter |
ExtractImageInRoiAlgorithm.getAnnotationXLocation() |
OptionalTextAnnotationNameParameter |
ExtractImageInRoiAlgorithm.getAnnotationYLocation() |
OptionalTextAnnotationNameParameter |
ExtractImageInRoiAlgorithm.getAnnotationZLocation() |
OptionalTextAnnotationNameParameter |
SplitRoiConnectedComponentsAlgorithm.getComponentNameAnnotation() |
SplitRoiConnectedComponentsAlgorithm.DimensionOperation |
SplitRoiConnectedComponentsAlgorithm.getDimensionCOperation() |
SplitRoiConnectedComponentsAlgorithm.DimensionOperation |
SplitRoiConnectedComponentsAlgorithm.getDimensionTOperation() |
SplitRoiConnectedComponentsAlgorithm.DimensionOperation |
SplitRoiConnectedComponentsAlgorithm.getDimensionZOperation() |
JIPipeExpressionParameter |
SplitRoiConnectedComponentsAlgorithm.getGraphPostprocessing() |
LogicalOperation |
RoiCalculatorAlgorithm.getOperation() |
JIPipeExpressionParameter |
SplitRoiConnectedComponentsAlgorithm.getOverlapFilter() |
ImageStatisticsSetParameter |
SplitRoiConnectedComponentsAlgorithm.getOverlapFilterMeasurements() |
boolean |
RoiCalculatorAlgorithm.isApplyPerChannel() |
boolean |
RoiCalculatorAlgorithm.isApplyPerFrame() |
boolean |
RoiCalculatorAlgorithm.isApplyPerSlice() |
boolean |
CropToRoiAlgorithm.isCropC() |
boolean |
CropToRoiAlgorithm.isCropT() |
boolean |
CropToRoiAlgorithm.isCropXY() |
boolean |
CropToRoiAlgorithm.isCropZ() |
boolean |
ExtractImageInRoiAlgorithm.isIgnoreC() |
boolean |
ExtractImageInRoiAlgorithm.isIgnoreT() |
boolean |
ExtractImageInRoiAlgorithm.isIgnoreZ() |
boolean |
SplitRoiConnectedComponentsAlgorithm.isMeasureInPhysicalUnits() |
boolean |
RoiCalculatorAlgorithm.isSplitAfterwards() |
boolean |
SplitRoiConnectedComponentsAlgorithm.isSplitAtJunctions() |
boolean |
SplitRoiConnectedComponentsAlgorithm.isTrySolveJunctions() |
void |
ExtractImageInRoiAlgorithm.setAnnotationCLocation(OptionalTextAnnotationNameParameter annotationCLocation) |
void |
ExtractImageInRoiAlgorithm.setAnnotationTLocation(OptionalTextAnnotationNameParameter annotationTLocation) |
void |
ExtractImageInRoiAlgorithm.setAnnotationXLocation(OptionalTextAnnotationNameParameter annotationXLocation) |
void |
ExtractImageInRoiAlgorithm.setAnnotationYLocation(OptionalTextAnnotationNameParameter annotationYLocation) |
void |
ExtractImageInRoiAlgorithm.setAnnotationZLocation(OptionalTextAnnotationNameParameter annotationZLocation) |
void |
RoiCalculatorAlgorithm.setApplyPerChannel(boolean applyPerChannel) |
void |
RoiCalculatorAlgorithm.setApplyPerFrame(boolean applyPerFrame) |
void |
RoiCalculatorAlgorithm.setApplyPerSlice(boolean applyPerSlice) |
void |
SplitRoiConnectedComponentsAlgorithm.setComponentNameAnnotation(OptionalTextAnnotationNameParameter componentNameAnnotation) |
void |
CropToRoiAlgorithm.setCropC(boolean cropC) |
void |
CropToRoiAlgorithm.setCropT(boolean cropT) |
void |
CropToRoiAlgorithm.setCropXY(boolean cropXY) |
void |
CropToRoiAlgorithm.setCropZ(boolean cropZ) |
void |
SplitRoiConnectedComponentsAlgorithm.setDimensionCOperation(SplitRoiConnectedComponentsAlgorithm.DimensionOperation dimensionCOperation) |
void |
SplitRoiConnectedComponentsAlgorithm.setDimensionTOperation(SplitRoiConnectedComponentsAlgorithm.DimensionOperation dimensionTOperation) |
void |
SplitRoiConnectedComponentsAlgorithm.setDimensionZOperation(SplitRoiConnectedComponentsAlgorithm.DimensionOperation dimensionZOperation) |
void |
SplitRoiConnectedComponentsAlgorithm.setGraphPostprocessing(JIPipeExpressionParameter graphPostprocessing) |
void |
ExtractImageInRoiAlgorithm.setIgnoreC(boolean ignoreC) |
void |
ExtractImageInRoiAlgorithm.setIgnoreT(boolean ignoreT) |
void |
ExtractImageInRoiAlgorithm.setIgnoreZ(boolean ignoreZ) |
void |
SplitRoiConnectedComponentsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits) |
void |
RoiCalculatorAlgorithm.setOperation(LogicalOperation operation) |
void |
SplitRoiConnectedComponentsAlgorithm.setOverlapFilter(JIPipeExpressionParameter overlapFilter) |
void |
SplitRoiConnectedComponentsAlgorithm.setOverlapFilterMeasurements(ImageStatisticsSetParameter overlapFilterMeasurements) |
void |
RoiCalculatorAlgorithm.setSplitAfterwards(boolean splitAfterwards) |
void |
SplitRoiConnectedComponentsAlgorithm.setSplitAtJunctions(boolean splitAtJunctions) |
void |
SplitRoiConnectedComponentsAlgorithm.setTrySolveJunctions(boolean trySolveJunctions) |
Modifier and Type | Method and Description |
---|---|
JIPipeTextAnnotationMergeMode |
RoiPropertiesToAnnotationsAlgorithm.getAnnotationMergeStrategy() |
OptionalTextAnnotationNameParameter |
RoiPropertiesToAnnotationsAlgorithm.getCountAnnotation() |
OptionalTextAnnotationNameParameter |
RoiPropertiesToAnnotationsAlgorithm.getFillColorAnnotation() |
OptionalTextAnnotationNameParameter |
RoiPropertiesToAnnotationsAlgorithm.getLineColorAnnotation() |
OptionalTextAnnotationNameParameter |
RoiPropertiesToAnnotationsAlgorithm.getLineWidthAnnotation() |
OptionalTextAnnotationNameParameter |
RoiPropertiesToAnnotationsAlgorithm.getLocationCAnnotation() |
OptionalTextAnnotationNameParameter |
RoiPropertiesToAnnotationsAlgorithm.getLocationTAnnotation() |
OptionalTextAnnotationNameParameter |
RoiPropertiesToAnnotationsAlgorithm.getLocationXAnnotation() |
OptionalTextAnnotationNameParameter |
RoiPropertiesToAnnotationsAlgorithm.getLocationYAnnotation() |
OptionalTextAnnotationNameParameter |
RoiPropertiesToAnnotationsAlgorithm.getLocationZAnnotation() |
OptionalTextAnnotationNameParameter |
RoiPropertiesToAnnotationsAlgorithm.getNameAnnotation() |
boolean |
RoiPropertiesToAnnotationsAlgorithm.isDeduplicate() |
boolean |
RoiPropertiesToAnnotationsAlgorithm.isOnlyFirst() |
void |
RoiPropertiesToAnnotationsAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy) |
void |
RoiPropertiesToAnnotationsAlgorithm.setCountAnnotation(OptionalTextAnnotationNameParameter countAnnotation) |
void |
RoiPropertiesToAnnotationsAlgorithm.setDeduplicate(boolean deduplicate) |
void |
RoiPropertiesToAnnotationsAlgorithm.setFillColorAnnotation(OptionalTextAnnotationNameParameter fillColorAnnotation) |
void |
RoiPropertiesToAnnotationsAlgorithm.setLineColorAnnotation(OptionalTextAnnotationNameParameter lineColorAnnotation) |
void |
RoiPropertiesToAnnotationsAlgorithm.setLineWidthAnnotation(OptionalTextAnnotationNameParameter lineWidthAnnotation) |
void |
RoiPropertiesToAnnotationsAlgorithm.setLocationCAnnotation(OptionalTextAnnotationNameParameter locationCAnnotation) |
void |
RoiPropertiesToAnnotationsAlgorithm.setLocationTAnnotation(OptionalTextAnnotationNameParameter locationTAnnotation) |
void |
RoiPropertiesToAnnotationsAlgorithm.setLocationXAnnotation(OptionalTextAnnotationNameParameter locationXAnnotation) |
void |
RoiPropertiesToAnnotationsAlgorithm.setLocationYAnnotation(OptionalTextAnnotationNameParameter locationYAnnotation) |
void |
RoiPropertiesToAnnotationsAlgorithm.setLocationZAnnotation(OptionalTextAnnotationNameParameter locationZAnnotation) |
void |
RoiPropertiesToAnnotationsAlgorithm.setNameAnnotation(OptionalTextAnnotationNameParameter nameAnnotation) |
void |
RoiPropertiesToAnnotationsAlgorithm.setOnlyFirst(boolean onlyFirst) |
Modifier and Type | Method and Description |
---|---|
OptionalTextAnnotationNameParameter |
ExtractFromROIAlgorithm.getAnnotationBoundingHeight() |
OptionalTextAnnotationNameParameter |
ExtractFromROIAlgorithm.getAnnotationBoundingWidth() |
OptionalStringParameter |
AssembleExtractedROIAlgorithm.getAnnotationC() |
OptionalTextAnnotationNameParameter |
ExtractFromROIAlgorithm.getAnnotationC() |
JIPipeTextAnnotationMergeMode |
ExtractFromROIAlgorithm.getAnnotationMergeStrategy() |
OptionalStringParameter |
AssembleExtractedROIAlgorithm.getAnnotationT() |
OptionalTextAnnotationNameParameter |
ExtractFromROIAlgorithm.getAnnotationT() |
String |
AssembleExtractedROIAlgorithm.getAnnotationX() |
OptionalTextAnnotationNameParameter |
ExtractFromROIAlgorithm.getAnnotationX() |
String |
AssembleExtractedROIAlgorithm.getAnnotationY() |
OptionalTextAnnotationNameParameter |
ExtractFromROIAlgorithm.getAnnotationY() |
OptionalStringParameter |
AssembleExtractedROIAlgorithm.getAnnotationZ() |
OptionalTextAnnotationNameParameter |
ExtractFromROIAlgorithm.getAnnotationZ() |
OptionalColorParameter |
ExtractFromROIAlgorithm.getOutsideColor() |
Anchor |
AssembleExtractedROIAlgorithm.getXyAnchor() |
Anchor |
ExtractFromROIAlgorithm.getXyAnchor() |
boolean |
AssembleExtractedROIAlgorithm.isDoScaling() |
void |
ExtractFromROIAlgorithm.setAnnotationBoundingHeight(OptionalTextAnnotationNameParameter annotationBoundingHeight) |
void |
ExtractFromROIAlgorithm.setAnnotationBoundingWidth(OptionalTextAnnotationNameParameter annotationBoundingWidth) |
void |
AssembleExtractedROIAlgorithm.setAnnotationC(OptionalStringParameter annotationC) |
void |
ExtractFromROIAlgorithm.setAnnotationC(OptionalTextAnnotationNameParameter annotationC) |
void |
ExtractFromROIAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy) |
void |
AssembleExtractedROIAlgorithm.setAnnotationT(OptionalStringParameter annotationT) |
void |
ExtractFromROIAlgorithm.setAnnotationT(OptionalTextAnnotationNameParameter annotationT) |
void |
ExtractFromROIAlgorithm.setAnnotationX(OptionalTextAnnotationNameParameter annotationX) |
void |
AssembleExtractedROIAlgorithm.setAnnotationX(String annotationX) |
void |
ExtractFromROIAlgorithm.setAnnotationY(OptionalTextAnnotationNameParameter annotationY) |
void |
AssembleExtractedROIAlgorithm.setAnnotationY(String annotationY) |
void |
AssembleExtractedROIAlgorithm.setAnnotationZ(OptionalStringParameter annotationZ) |
void |
ExtractFromROIAlgorithm.setAnnotationZ(OptionalTextAnnotationNameParameter annotationZ) |
void |
AssembleExtractedROIAlgorithm.setDoScaling(boolean doScaling) |
void |
ExtractFromROIAlgorithm.setOutsideColor(OptionalColorParameter outsideColor) |
void |
AssembleExtractedROIAlgorithm.setXyAnchor(Anchor xyAnchor) |
void |
ExtractFromROIAlgorithm.setXyAnchor(Anchor xyAnchor) |
Modifier and Type | Method and Description |
---|---|
ROIElementDrawingMode |
RoiToRGBAlgorithm.getDrawFilledOutlineMode() |
ROIElementDrawingMode |
UnreferencedRoiToRGBAlgorithm.getDrawFilledOutlineMode() |
RoiLabel |
RoiToRGBAlgorithm.getDrawnLabel() |
ROIElementDrawingMode |
RoiToRGBAlgorithm.getDrawOutlineMode() |
ROIElementDrawingMode |
UnreferencedRoiToRGBAlgorithm.getDrawOutlineMode() |
Margin |
UnreferencedRoiToRGBAlgorithm.getImageArea() |
Margin |
UnreferencedRoiToMaskAlgorithm.getImageArea() |
int |
ROIToLabelsByNameAlgorithm.ROINameToLabelEntry.getLabel() |
ParameterCollectionList |
ROIToLabelsByNameAlgorithm.getLabelAssignment() |
OptionalColorParameter |
RoiToRGBAlgorithm.getLabelBackground() |
FontFamilyParameter |
RoiToRGBAlgorithm.getLabelFontFamily() |
Color |
RoiToRGBAlgorithm.getLabelForeground() |
int |
RoiToRGBAlgorithm.getLabelSize() |
int |
RoiToMaskAlgorithm.getLineThickness() |
int |
UnreferencedRoiToMaskAlgorithm.getLineThickness() |
double |
RoiToRGBAlgorithm.getMagnification() |
String |
ROIToLabelsByNameAlgorithm.ROINameToLabelEntry.getName() |
double |
RoiToRGBAlgorithm.getOpacity() |
OptionalColorParameter |
RoiToRGBAlgorithm.getOverrideFillColor() |
OptionalColorParameter |
UnreferencedRoiToRGBAlgorithm.getOverrideFillColor() |
OptionalColorParameter |
RoiToRGBAlgorithm.getOverrideLineColor() |
OptionalColorParameter |
UnreferencedRoiToRGBAlgorithm.getOverrideLineColor() |
OptionalDoubleParameter |
RoiToRGBAlgorithm.getOverrideLineWidth() |
OptionalDoubleParameter |
UnreferencedRoiToRGBAlgorithm.getOverrideLineWidth() |
OptionalJIPipeExpressionParameter |
ROIToLabelsExpressionAlgorithm.getRoiToLabelTransformation() |
boolean |
RoiToMaskAlgorithm.isDrawFilledOutline() |
boolean |
UnreferencedRoiToMaskAlgorithm.isDrawFilledOutline() |
boolean |
UnreferencedRoiToRGBAlgorithm.isDrawLabel() |
boolean |
RoiToMaskAlgorithm.isDrawOutline() |
boolean |
ROIToLabelsExpressionAlgorithm.isDrawOutline() |
boolean |
ROIToLabelsByNameAlgorithm.isDrawOutline() |
boolean |
UnreferencedRoiToMaskAlgorithm.isDrawOutline() |
boolean |
RoiToRGBAlgorithm.isDrawOver() |
boolean |
UnreferencedRoiToRGBAlgorithm.isDrawOver() |
boolean |
RoiToMaskAlgorithm.isDrawOver() |
boolean |
ROIToLabelsExpressionAlgorithm.isFillOutline() |
boolean |
ROIToLabelsByNameAlgorithm.isFillOutline() |
boolean |
RoiToRGBAlgorithm.isIgnoreC() |
boolean |
UnreferencedRoiToRGBAlgorithm.isIgnoreC() |
boolean |
RoiToRGBAlgorithm.isIgnoreT() |
boolean |
UnreferencedRoiToRGBAlgorithm.isIgnoreT() |
boolean |
RoiToRGBAlgorithm.isIgnoreZ() |
boolean |
UnreferencedRoiToRGBAlgorithm.isIgnoreZ() |
boolean |
UnreferencedRoiToRGBAlgorithm.isPreferAssociatedImage() |
boolean |
UnreferencedRoiToMaskAlgorithm.isPreferAssociatedImage() |
boolean |
RoiToRGBAlgorithm.isPreferRenderViaOverlay() |
void |
RoiToMaskAlgorithm.setDrawFilledOutline(boolean drawFilledOutline) |
void |
UnreferencedRoiToMaskAlgorithm.setDrawFilledOutline(boolean drawFilledOutline) |
void |
RoiToRGBAlgorithm.setDrawFilledOutlineMode(ROIElementDrawingMode drawFilledOutlineMode) |
void |
UnreferencedRoiToRGBAlgorithm.setDrawFilledOutlineMode(ROIElementDrawingMode drawFilledOutlineMode) |
void |
UnreferencedRoiToRGBAlgorithm.setDrawLabel(boolean drawLabel) |
void |
RoiToRGBAlgorithm.setDrawnLabel(RoiLabel drawnLabel) |
void |
RoiToMaskAlgorithm.setDrawOutline(boolean drawOutline) |
void |
ROIToLabelsExpressionAlgorithm.setDrawOutline(boolean drawOutline) |
void |
ROIToLabelsByNameAlgorithm.setDrawOutline(boolean drawOutline) |
void |
UnreferencedRoiToMaskAlgorithm.setDrawOutline(boolean drawOutline) |
void |
RoiToRGBAlgorithm.setDrawOutlineMode(ROIElementDrawingMode drawOutlineMode) |
void |
UnreferencedRoiToRGBAlgorithm.setDrawOutlineMode(ROIElementDrawingMode drawOutlineMode) |
void |
RoiToRGBAlgorithm.setDrawOver(boolean drawOver) |
void |
UnreferencedRoiToRGBAlgorithm.setDrawOver(boolean drawOver) |
void |
RoiToMaskAlgorithm.setDrawOver(boolean drawOver) |
void |
ROIToLabelsExpressionAlgorithm.setFillOutline(boolean fillOutline) |
void |
ROIToLabelsByNameAlgorithm.setFillOutline(boolean fillOutline) |
void |
RoiToRGBAlgorithm.setIgnoreC(boolean ignoreC) |
void |
UnreferencedRoiToRGBAlgorithm.setIgnoreC(boolean ignoreC) |
void |
RoiToRGBAlgorithm.setIgnoreT(boolean ignoreT) |
void |
UnreferencedRoiToRGBAlgorithm.setIgnoreT(boolean ignoreT) |
void |
RoiToRGBAlgorithm.setIgnoreZ(boolean ignoreZ) |
void |
UnreferencedRoiToRGBAlgorithm.setIgnoreZ(boolean ignoreZ) |
void |
UnreferencedRoiToRGBAlgorithm.setImageArea(Margin imageArea) |
void |
UnreferencedRoiToMaskAlgorithm.setImageArea(Margin imageArea) |
void |
ROIToLabelsByNameAlgorithm.ROINameToLabelEntry.setLabel(int label) |
void |
ROIToLabelsByNameAlgorithm.setLabelAssignment(ParameterCollectionList labelAssignment) |
void |
RoiToRGBAlgorithm.setLabelBackground(OptionalColorParameter labelBackground) |
void |
RoiToRGBAlgorithm.setLabelFontFamily(FontFamilyParameter labelFontFamily) |
void |
RoiToRGBAlgorithm.setLabelForeground(Color labelForeground) |
boolean |
RoiToRGBAlgorithm.setLabelSize(int labelSize) |
void |
RoiToMaskAlgorithm.setLineThickness(int lineThickness) |
void |
UnreferencedRoiToMaskAlgorithm.setLineThickness(int lineThickness) |
void |
RoiToRGBAlgorithm.setMagnification(double magnification) |
void |
ROIToLabelsByNameAlgorithm.ROINameToLabelEntry.setName(String name) |
boolean |
RoiToRGBAlgorithm.setOpacity(double opacity) |
void |
RoiToRGBAlgorithm.setOverrideFillColor(OptionalColorParameter overrideFillColor) |
void |
UnreferencedRoiToRGBAlgorithm.setOverrideFillColor(OptionalColorParameter overrideFillColor) |
void |
RoiToRGBAlgorithm.setOverrideLineColor(OptionalColorParameter overrideLineColor) |
void |
UnreferencedRoiToRGBAlgorithm.setOverrideLineColor(OptionalColorParameter overrideLineColor) |
void |
RoiToRGBAlgorithm.setOverrideLineWidth(OptionalDoubleParameter overrideLineWidth) |
void |
UnreferencedRoiToRGBAlgorithm.setOverrideLineWidth(OptionalDoubleParameter overrideLineWidth) |
void |
UnreferencedRoiToRGBAlgorithm.setPreferAssociatedImage(boolean preferAssociatedImage) |
void |
UnreferencedRoiToMaskAlgorithm.setPreferAssociatedImage(boolean preferAssociatedImage) |
void |
RoiToRGBAlgorithm.setPreferRenderViaOverlay(boolean preferRenderViaOverlay) |
void |
ROIToLabelsExpressionAlgorithm.setRoiToLabelTransformation(OptionalJIPipeExpressionParameter roiToLabelTransformation) |
Modifier and Type | Method and Description |
---|---|
double |
DrawTextRoiAlgorithm.getAngle() |
int |
DrawRectangleRoiAlgorithm.getArcHeight() |
int |
DrawRectangleRoiAlgorithm.getArcWidth() |
OptionalColorParameter |
DrawScaleBarRoiAlgorithm.getBackgroundColor() |
Color |
DrawScaleBarRoiAlgorithm.getBarColor() |
int |
DrawScaleBarRoiAlgorithm.getBarThickness() |
OptionalColorParameter |
ROIProperties.getFillColor() |
FontFamilyParameter |
DrawScaleBarRoiAlgorithm.TextSettings.getFontFamily() |
FontFamilyParameter |
DrawTextRoiAlgorithm.getFontFamily() |
int |
DrawScaleBarRoiAlgorithm.TextSettings.getFontSize() |
int |
DrawTextRoiAlgorithm.getFontSize() |
FontStyleParameter |
DrawScaleBarRoiAlgorithm.TextSettings.getFontStyle() |
FontStyleParameter |
DrawTextRoiAlgorithm.getFontStyle() |
OptionalQuantity |
DrawScaleBarRoiAlgorithm.getHorizontalBarSize() |
JIPipeExpressionParameter |
DrawScaleBarRoiAlgorithm.TextSettings.getHorizontalLabel() |
OptionalColorParameter |
ROIProperties.getLineColor() |
double |
ROIProperties.getLineWidth() |
ScaleBarGenerator.ScaleBarPosition |
DrawScaleBarRoiAlgorithm.getLocation() |
FixedMargin |
DrawTextRoiAlgorithm.getLocation() |
int |
ROIProperties.getPositionC() |
int |
ROIProperties.getPositionT() |
int |
ROIProperties.getPositionZ() |
Margin.List |
DrawRectangleRoiAlgorithm.getRectangles() |
Margin.List |
DrawOvalRoiAlgorithm.getRectangles() |
JIPipeExpressionParameter |
ROIProperties.getRoiName() |
ROIProperties |
DrawRectangleRoiAlgorithm.getRoiProperties() |
ROIProperties |
DrawOvalRoiAlgorithm.getRoiProperties() |
ROIProperties |
DrawTextRoiAlgorithm.getRoiProperties() |
JIPipeExpressionParameter |
DrawTextRoiAlgorithm.getText() |
Color |
DrawScaleBarRoiAlgorithm.TextSettings.getTextColor() |
DrawScaleBarRoiAlgorithm.TextSettings |
DrawScaleBarRoiAlgorithm.getTextSettings() |
OptionalQuantity |
DrawScaleBarRoiAlgorithm.getVerticalBarSize() |
JIPipeExpressionParameter |
DrawScaleBarRoiAlgorithm.TextSettings.getVerticalLabel() |
boolean |
DrawTextRoiAlgorithm.isAntialiased() |
boolean |
DrawRectangleRoiAlgorithm.isCenter() |
boolean |
DrawOvalRoiAlgorithm.isCenter() |
boolean |
DrawTextRoiAlgorithm.isCenter() |
boolean |
DrawScaleBarRoiAlgorithm.isDrawHorizontal() |
boolean |
DrawScaleBarRoiAlgorithm.isDrawVertical() |
boolean |
DrawScaleBarRoiAlgorithm.TextSettings.isHideLabels() |
void |
DrawTextRoiAlgorithm.setAngle(double angle) |
void |
DrawTextRoiAlgorithm.setAntialiased(boolean antialiased) |
void |
DrawRectangleRoiAlgorithm.setArcHeight(int arcHeight) |
void |
DrawRectangleRoiAlgorithm.setArcWidth(int arcWidth) |
void |
DrawScaleBarRoiAlgorithm.setBackgroundColor(OptionalColorParameter backgroundColor) |
void |
DrawScaleBarRoiAlgorithm.setBarColor(Color barColor) |
void |
DrawScaleBarRoiAlgorithm.setBarThickness(int barThickness) |
void |
DrawRectangleRoiAlgorithm.setCenter(boolean center) |
void |
DrawOvalRoiAlgorithm.setCenter(boolean center) |
void |
DrawTextRoiAlgorithm.setCenter(boolean center) |
void |
DrawScaleBarRoiAlgorithm.setDrawHorizontal(boolean drawHorizontal) |
void |
DrawScaleBarRoiAlgorithm.setDrawVertical(boolean drawVertical) |
void |
ROIProperties.setFillColor(OptionalColorParameter fillColor) |
void |
DrawScaleBarRoiAlgorithm.TextSettings.setFontFamily(FontFamilyParameter fontFamily) |
void |
DrawTextRoiAlgorithm.setFontFamily(FontFamilyParameter fontFamily) |
void |
DrawScaleBarRoiAlgorithm.TextSettings.setFontSize(int fontSize) |
void |
DrawTextRoiAlgorithm.setFontSize(int fontSize) |
void |
DrawScaleBarRoiAlgorithm.TextSettings.setFontStyle(FontStyleParameter fontStyle) |
void |
DrawTextRoiAlgorithm.setFontStyle(FontStyleParameter fontStyle) |
void |
DrawScaleBarRoiAlgorithm.TextSettings.setHideLabels(boolean hideLabels) |
void |
DrawScaleBarRoiAlgorithm.setHorizontalBarSize(OptionalQuantity horizontalBarSize) |
void |
DrawScaleBarRoiAlgorithm.TextSettings.setHorizontalLabel(JIPipeExpressionParameter horizontalLabel) |
void |
ROIProperties.setLineColor(OptionalColorParameter lineColor) |
void |
ROIProperties.setLineWidth(double lineWidth) |
void |
DrawTextRoiAlgorithm.setLocation(FixedMargin location) |
void |
DrawScaleBarRoiAlgorithm.setLocation(ScaleBarGenerator.ScaleBarPosition location) |
void |
ROIProperties.setPositionC(int positionC) |
void |
ROIProperties.setPositionT(int positionT) |
void |
ROIProperties.setPositionZ(int positionZ) |
void |
DrawRectangleRoiAlgorithm.setRectangles(Margin.List rectangles) |
void |
DrawOvalRoiAlgorithm.setRectangles(Margin.List rectangles) |
void |
ROIProperties.setRoiName(JIPipeExpressionParameter roiName) |
void |
DrawTextRoiAlgorithm.setText(JIPipeExpressionParameter text) |
void |
DrawScaleBarRoiAlgorithm.TextSettings.setTextColor(Color textColor) |
void |
DrawScaleBarRoiAlgorithm.setVerticalBarSize(OptionalQuantity verticalBarSize) |
void |
DrawScaleBarRoiAlgorithm.TextSettings.setVerticalLabel(JIPipeExpressionParameter verticalLabel) |
Modifier and Type | Method and Description |
---|---|
Margin |
RemoveBorderRoisAlgorithm.getBorderDefinition() |
PythonScript |
FilterRoiByStatisticsScriptAlgorithm.getCode() |
JIPipeExpressionParameter |
FilterROIListsAlgorithm.getFilter() |
JIPipeExpressionParameter |
FilterRoiByStatisticsAlgorithm.getFilters() |
JIPipeExpressionParameter |
FilterRoiByNameAlgorithm.getFilters() |
ImageStatisticsSetParameter |
FilterRoiByStatisticsAlgorithm.getMeasurements() |
RoiOutline |
RemoveBorderRoisAlgorithm.getOutline() |
JIPipeExpressionParameter |
FilterROIByOverlapAlgorithm.ROIFilterSettings.getOverlapFilter() |
ImageStatisticsSetParameter |
FilterROIByOverlapAlgorithm.getOverlapFilterMeasurements() |
FilterROIByOverlapAlgorithm.ROIFilterSettings |
FilterROIByOverlapAlgorithm.getRoi1Settings() |
FilterROIByOverlapAlgorithm.ROIFilterSettings |
FilterROIByOverlapAlgorithm.getRoi2Settings() |
JIPipeDynamicParameterCollection |
FilterRoiByStatisticsScriptAlgorithm.getScriptParameters() |
IntegerRange |
SliceROIListAlgorithm.getSelectedIndices() |
boolean |
SliceROIListAlgorithm.isAutoClamp() |
boolean |
FilterROIByOverlapAlgorithm.ROIFilterSettings.isConsumeOnOverlap() |
boolean |
FilterROIByOverlapAlgorithm.ROIFilterSettings.isEnabled() |
boolean |
FilterROIByOverlapAlgorithm.ROIFilterSettings.isEnforceOverlap() |
boolean |
FilterROIByOverlapAlgorithm.ROIFilterSettings.isFastMode() |
boolean |
FilterROIByOverlapAlgorithm.ROIFilterSettings.isIgnoreC() |
boolean |
FilterROIByOverlapAlgorithm.ROIFilterSettings.isIgnoreT() |
boolean |
FilterROIListsAlgorithm.isIncludeAnnotations() |
boolean |
FilterROIByOverlapAlgorithm.ROIFilterSettings.isInvert() |
boolean |
FilterRoiByStatisticsAlgorithm.isMeasureInPhysicalUnits() |
boolean |
FilterROIByOverlapAlgorithm.ROIFilterSettings.isMeasureInPhysicalUnits() |
boolean |
FilterRoiByStatisticsAlgorithm.isOutputEmptyLists() |
boolean |
FilterRoiByNameAlgorithm.isOutputEmptyLists() |
boolean |
FilterROIListsAlgorithm.isOutputEmptyLists() |
boolean |
FilterROIByOverlapAlgorithm.ROIFilterSettings.isOutputOverlaps() |
void |
SliceROIListAlgorithm.setAutoClamp(boolean autoClamp) |
void |
RemoveBorderRoisAlgorithm.setBorderDefinition(Margin borderDefinition) |
void |
FilterRoiByStatisticsScriptAlgorithm.setCode(PythonScript code) |
void |
FilterROIByOverlapAlgorithm.ROIFilterSettings.setConsumeOnOverlap(boolean consumeOnOverlap) |
void |
FilterROIByOverlapAlgorithm.ROIFilterSettings.setEnabled(boolean enabled) |
void |
FilterROIByOverlapAlgorithm.ROIFilterSettings.setEnforceOverlap(boolean enforceOverlap) |
void |
FilterROIByOverlapAlgorithm.ROIFilterSettings.setFastMode(boolean fastMode) |
void |
FilterROIListsAlgorithm.setFilter(JIPipeExpressionParameter filter) |
void |
FilterRoiByStatisticsAlgorithm.setFilters(JIPipeExpressionParameter filters) |
void |
FilterRoiByNameAlgorithm.setFilters(JIPipeExpressionParameter filters) |
void |
FilterROIByOverlapAlgorithm.ROIFilterSettings.setIgnoreC(boolean ignoreC) |
void |
FilterROIByOverlapAlgorithm.ROIFilterSettings.setIgnoreT(boolean ignoreT) |
void |
FilterROIListsAlgorithm.setIncludeAnnotations(boolean includeAnnotations) |
void |
FilterROIByOverlapAlgorithm.ROIFilterSettings.setInvert(boolean invert) |
void |
FilterRoiByStatisticsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits) |
void |
FilterROIByOverlapAlgorithm.ROIFilterSettings.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits) |
void |
FilterRoiByStatisticsAlgorithm.setMeasurements(ImageStatisticsSetParameter measurements) |
void |
RemoveBorderRoisAlgorithm.setOutline(RoiOutline outline) |
void |
FilterRoiByStatisticsAlgorithm.setOutputEmptyLists(boolean outputEmptyLists) |
void |
FilterRoiByNameAlgorithm.setOutputEmptyLists(boolean outputEmptyLists) |
void |
FilterROIListsAlgorithm.setOutputEmptyLists(boolean outputEmptyLists) |
void |
FilterROIByOverlapAlgorithm.ROIFilterSettings.setOutputOverlaps(boolean outputOverlaps) |
void |
FilterROIByOverlapAlgorithm.ROIFilterSettings.setOverlapFilter(JIPipeExpressionParameter overlapFilter) |
void |
FilterROIByOverlapAlgorithm.setOverlapFilterMeasurements(ImageStatisticsSetParameter overlapFilterMeasurements) |
void |
SliceROIListAlgorithm.setSelectedIndices(IntegerRange selectedIndices) |
Modifier and Type | Method and Description |
---|---|
TableToRectangularROIAlgorithm.Anchor |
TableToRectangularROIAlgorithm.getAnchor() |
TableColumnSourceExpressionParameter |
TableToRectangularROIAlgorithm.getColumnC() |
TableColumnSourceExpressionParameter |
TableToCircularROIAlgorithm.getColumnC() |
TableColumnSourceExpressionParameter |
TableToRectangularROIAlgorithm.getColumnHeight() |
TableColumnSourceExpressionParameter |
TableToCircularROIAlgorithm.getColumnRadius() |
TableColumnSourceExpressionParameter |
TableToRectangularROIAlgorithm.getColumnT() |
TableColumnSourceExpressionParameter |
TableToCircularROIAlgorithm.getColumnT() |
TableColumnSourceExpressionParameter |
TableToRectangularROIAlgorithm.getColumnWidth() |
TableColumnSourceExpressionParameter |
TableToRectangularROIAlgorithm.getColumnX1() |
TableColumnSourceExpressionParameter |
TableToCircularROIAlgorithm.getColumnX1() |
TableColumnSourceExpressionParameter |
TableToRectangularROIAlgorithm.getColumnX2() |
TableColumnSourceExpressionParameter |
TableToRectangularROIAlgorithm.getColumnY1() |
TableColumnSourceExpressionParameter |
TableToCircularROIAlgorithm.getColumnY1() |
TableColumnSourceExpressionParameter |
TableToRectangularROIAlgorithm.getColumnY2() |
TableColumnSourceExpressionParameter |
TableToRectangularROIAlgorithm.getColumnZ() |
TableColumnSourceExpressionParameter |
TableToCircularROIAlgorithm.getColumnZ() |
TableToRectangularROIAlgorithm.Mode |
TableToRectangularROIAlgorithm.getMode() |
Margin.List |
AppendRectangularRoiAlgorithm.getRectangles()
Deprecated.
|
RectangleList |
DefineRectangularRoiAlgorithm.getRectangles()
Deprecated.
|
Margin.List |
ReferencedAppendRectangularRoiAlgorithm.getRectangles()
Deprecated.
|
Margin.List |
ReferencedDefineRectangularRoiAlgorithm.getRectangles()
Deprecated.
|
int |
MaskToRoiAlgorithm.getThreshold() |
boolean |
MaskToRoiAlgorithm.isInvertThreshold() |
boolean |
TableToRectangularROIAlgorithm.isOneBasedPositions() |
boolean |
TableToCircularROIAlgorithm.isOneBasedPositions() |
boolean |
DefineRectangularRoiAlgorithm.isSplit()
Deprecated.
|
boolean |
ReferencedDefineRectangularRoiAlgorithm.isSplit()
Deprecated.
|
void |
TableToRectangularROIAlgorithm.setAnchor(TableToRectangularROIAlgorithm.Anchor anchor) |
void |
TableToRectangularROIAlgorithm.setColumnC(TableColumnSourceExpressionParameter columnC) |
void |
TableToCircularROIAlgorithm.setColumnC(TableColumnSourceExpressionParameter columnC) |
void |
TableToRectangularROIAlgorithm.setColumnHeight(TableColumnSourceExpressionParameter columnHeight) |
void |
TableToCircularROIAlgorithm.setColumnRadius(TableColumnSourceExpressionParameter columnRadius) |
void |
TableToRectangularROIAlgorithm.setColumnT(TableColumnSourceExpressionParameter columnT) |
void |
TableToCircularROIAlgorithm.setColumnT(TableColumnSourceExpressionParameter columnT) |
void |
TableToRectangularROIAlgorithm.setColumnWidth(TableColumnSourceExpressionParameter columnWidth) |
void |
TableToRectangularROIAlgorithm.setColumnX1(TableColumnSourceExpressionParameter columnX1) |
void |
TableToCircularROIAlgorithm.setColumnX1(TableColumnSourceExpressionParameter columnX1) |
void |
TableToRectangularROIAlgorithm.setColumnX2(TableColumnSourceExpressionParameter columnX2) |
void |
TableToRectangularROIAlgorithm.setColumnY1(TableColumnSourceExpressionParameter columnY1) |
void |
TableToCircularROIAlgorithm.setColumnY1(TableColumnSourceExpressionParameter columnY1) |
void |
TableToRectangularROIAlgorithm.setColumnY2(TableColumnSourceExpressionParameter columnY2) |
void |
TableToRectangularROIAlgorithm.setColumnZ(TableColumnSourceExpressionParameter columnZ) |
void |
TableToCircularROIAlgorithm.setColumnZ(TableColumnSourceExpressionParameter columnZ) |
void |
MaskToRoiAlgorithm.setInvertThreshold(boolean invertThreshold) |
void |
TableToRectangularROIAlgorithm.setMode(TableToRectangularROIAlgorithm.Mode mode) |
void |
TableToRectangularROIAlgorithm.setOneBasedPositions(boolean oneBasedPositions) |
void |
TableToCircularROIAlgorithm.setOneBasedPositions(boolean oneBasedPositions) |
void |
AppendRectangularRoiAlgorithm.setRectangles(Margin.List rectangles)
Deprecated.
|
void |
ReferencedAppendRectangularRoiAlgorithm.setRectangles(Margin.List rectangles)
Deprecated.
|
void |
ReferencedDefineRectangularRoiAlgorithm.setRectangles(Margin.List rectangles)
Deprecated.
|
void |
DefineRectangularRoiAlgorithm.setRectangles(RectangleList rectangles)
Deprecated.
|
void |
DefineRectangularRoiAlgorithm.setSplit(boolean split)
Deprecated.
|
void |
ReferencedDefineRectangularRoiAlgorithm.setSplit(boolean split)
Deprecated.
|
void |
MaskToRoiAlgorithm.setThreshold(int threshold) |
Modifier and Type | Method and Description |
---|---|
OptionalStringParameter |
RoiStatisticsAlgorithm.getIndexAnnotation() |
ROI2DRelationMeasurementSetParameter |
ExtractRoi2DRelationStatisticsAlgorithm.getMeasurements() |
ImageStatisticsSetParameter |
RoiStatisticsAlgorithm.getMeasurements() |
boolean |
CountROIAlgorithm.isAddAnnotations() |
boolean |
RoiStatisticsAlgorithm.isAddNameToTable() |
boolean |
RoiStatisticsAlgorithm.isApplyPerChannel() |
boolean |
RoiStatisticsAlgorithm.isApplyPerFrame() |
boolean |
RoiStatisticsAlgorithm.isApplyPerSlice() |
boolean |
ExtractRoi2DRelationStatisticsAlgorithm.isMeasureInPhysicalUnits() |
boolean |
RoiStatisticsAlgorithm.isMeasureInPhysicalUnits() |
boolean |
ExtractRoi2DRelationStatisticsAlgorithm.isPreciseColocalization() |
boolean |
ExtractRoi2DRelationStatisticsAlgorithm.isRequireColocalization() |
void |
CountROIAlgorithm.setAddAnnotations(boolean addAnnotations) |
void |
RoiStatisticsAlgorithm.setAddNameToTable(boolean addNameToTable) |
void |
RoiStatisticsAlgorithm.setApplyPerChannel(boolean applyPerChannel) |
void |
RoiStatisticsAlgorithm.setApplyPerFrame(boolean applyPerFrame) |
void |
RoiStatisticsAlgorithm.setApplyPerSlice(boolean applyPerSlice) |
void |
RoiStatisticsAlgorithm.setIndexAnnotation(OptionalStringParameter indexAnnotation) |
void |
ExtractRoi2DRelationStatisticsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits) |
void |
RoiStatisticsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits) |
void |
RoiStatisticsAlgorithm.setMeasurements(ImageStatisticsSetParameter measurements) |
void |
ExtractRoi2DRelationStatisticsAlgorithm.setMeasurements(ROI2DRelationMeasurementSetParameter measurements) |
void |
ExtractRoi2DRelationStatisticsAlgorithm.setPreciseColocalization(boolean preciseColocalization) |
void |
ExtractRoi2DRelationStatisticsAlgorithm.setRequireColocalization(boolean requireColocalization) |
Modifier and Type | Method and Description |
---|---|
PythonScript |
FilterAndMergeRoiByStatisticsScriptAlgorithm.getCode() |
JIPipeDynamicParameterCollection |
FilterAndMergeRoiByStatisticsScriptAlgorithm.getScriptParameters() |
void |
FilterAndMergeRoiByStatisticsScriptAlgorithm.setCode(PythonScript code) |
Modifier and Type | Method and Description |
---|---|
JIPipeExpressionParameter |
RotateRoiAlgorithm.getAngle() |
OptionalTextAnnotationNameParameter |
ChangeRoiPropertiesFromAnnotationsAlgorithm.getCenterScale() |
boolean |
ChangeRoiPropertiesAlgorithm.getCenterScale() |
boolean |
ScaleRoiAlgorithm.getCenterScale() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromExpressionsAlgorithm.getCenterScale() |
JIPipeExpressionParameter |
RotateRoiAlgorithm.getCenterX() |
JIPipeExpressionParameter |
RotateRoiAlgorithm.getCenterY() |
StringQueryExpression |
ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm.getExpression() |
OptionalTextAnnotationNameParameter |
ChangeRoiPropertiesFromAnnotationsAlgorithm.getFillColor() |
OptionalColorParameter |
ChangeRoiPropertiesAlgorithm.getFillColor() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromExpressionsAlgorithm.getFillColor() |
MeasurementColumn |
ColorRoiByStatisticsAlgorithm.getFillMeasurement() |
OptionalTextAnnotationNameParameter |
ChangeRoiPropertiesFromAnnotationsAlgorithm.getLineColor() |
OptionalColorParameter |
ChangeRoiPropertiesAlgorithm.getLineColor() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromExpressionsAlgorithm.getLineColor() |
MeasurementColumn |
ColorRoiByStatisticsAlgorithm.getLineMeasurement() |
OptionalTextAnnotationNameParameter |
ChangeRoiPropertiesFromAnnotationsAlgorithm.getLineWidth() |
OptionalDoubleParameter |
ChangeRoiPropertiesAlgorithm.getLineWidth() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromExpressionsAlgorithm.getLineWidth() |
OptionalColorMapParameter |
ColorRoiByStatisticsAlgorithm.getMapFillColor() |
OptionalColorMapParameter |
ColorRoiByNameAlgorithm.getMapFillColor() |
OptionalColorMapParameter |
ColorRoiByStatisticsAlgorithm.getMapLineColor() |
OptionalColorMapParameter |
ColorRoiByNameAlgorithm.getMapLineColor() |
ImageStatisticsSetParameter |
ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm.getMeasurements() |
ImageStatisticsSetParameter |
ChangeRoiPropertiesFromExpressionsAlgorithm.getMeasurements() |
RoiFloodFillAlgorithm.Mode |
RoiFloodFillAlgorithm.getMode() |
RoiOutline |
OutlineRoiAlgorithm.getOutline() |
OptionalTextAnnotationNameParameter |
ChangeRoiPropertiesFromAnnotationsAlgorithm.getPositionC() |
OptionalIntegerParameter |
ChangeRoiPropertiesAlgorithm.getPositionC() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromExpressionsAlgorithm.getPositionC() |
OptionalTextAnnotationNameParameter |
ChangeRoiPropertiesFromAnnotationsAlgorithm.getPositionT() |
OptionalIntegerParameter |
ChangeRoiPropertiesAlgorithm.getPositionT() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromExpressionsAlgorithm.getPositionT() |
OptionalTextAnnotationNameParameter |
ChangeRoiPropertiesFromAnnotationsAlgorithm.getPositionX() |
OptionalDoubleParameter |
ChangeRoiPropertiesAlgorithm.getPositionX() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromExpressionsAlgorithm.getPositionX() |
OptionalTextAnnotationNameParameter |
ChangeRoiPropertiesFromAnnotationsAlgorithm.getPositionY() |
OptionalDoubleParameter |
ChangeRoiPropertiesAlgorithm.getPositionY() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromExpressionsAlgorithm.getPositionY() |
OptionalTextAnnotationNameParameter |
ChangeRoiPropertiesFromAnnotationsAlgorithm.getPositionZ() |
OptionalIntegerParameter |
ChangeRoiPropertiesAlgorithm.getPositionZ() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromExpressionsAlgorithm.getPositionZ() |
OptionalTextAnnotationNameParameter |
ChangeRoiPropertiesFromAnnotationsAlgorithm.getRoiName() |
OptionalStringParameter |
ChangeRoiPropertiesAlgorithm.getRoiName() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromExpressionsAlgorithm.getRoiName() |
OptionalTextAnnotationNameParameter |
ChangeRoiPropertiesFromAnnotationsAlgorithm.getScaleX() |
OptionalDoubleParameter |
ChangeRoiPropertiesAlgorithm.getScaleX() |
double |
ScaleRoiAlgorithm.getScaleX() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromExpressionsAlgorithm.getScaleX() |
OptionalTextAnnotationNameParameter |
ChangeRoiPropertiesFromAnnotationsAlgorithm.getScaleY() |
OptionalDoubleParameter |
ChangeRoiPropertiesAlgorithm.getScaleY() |
double |
ScaleRoiAlgorithm.getScaleY() |
OptionalJIPipeExpressionParameter |
ChangeRoiPropertiesFromExpressionsAlgorithm.getScaleY() |
HyperstackDimension |
ReorderRoiDimensionsAlgorithm.getTargetC() |
HyperstackDimension |
ReorderRoiDimensionsAlgorithm.getTargetT() |
HyperstackDimension |
ReorderRoiDimensionsAlgorithm.getTargetZ() |
double |
RoiFloodFillAlgorithm.getTolerance() |
boolean |
CropRoiListAlgorithm.isCropC() |
boolean |
CropRoiListAlgorithm.isCropT() |
boolean |
CropRoiListAlgorithm.isCropXY() |
boolean |
CropRoiListAlgorithm.isCropZ() |
boolean |
ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm.isIncludeAnnotations() |
boolean |
ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm.isMeasureInPhysicalUnits() |
boolean |
ChangeRoiPropertiesFromExpressionsAlgorithm.isMeasureInPhysicalUnits() |
boolean |
RoiFloodFillAlgorithm.isSmooth() |
void |
RotateRoiAlgorithm.setAngle(JIPipeExpressionParameter angle) |
void |
ChangeRoiPropertiesAlgorithm.setCenterScale(boolean centerScale) |
void |
ScaleRoiAlgorithm.setCenterScale(boolean centerScale) |
void |
ChangeRoiPropertiesFromExpressionsAlgorithm.setCenterScale(OptionalJIPipeExpressionParameter centerScale) |
void |
ChangeRoiPropertiesFromAnnotationsAlgorithm.setCenterScale(OptionalTextAnnotationNameParameter centerScale) |
void |
RotateRoiAlgorithm.setCenterX(JIPipeExpressionParameter centerX) |
void |
RotateRoiAlgorithm.setCenterY(JIPipeExpressionParameter centerY) |
void |
CropRoiListAlgorithm.setCropC(boolean cropC) |
void |
CropRoiListAlgorithm.setCropT(boolean cropT) |
void |
CropRoiListAlgorithm.setCropXY(boolean cropXY) |
void |
CropRoiListAlgorithm.setCropZ(boolean cropZ) |
void |
ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm.setExpression(StringQueryExpression expression) |
void |
ChangeRoiPropertiesAlgorithm.setFillColor(OptionalColorParameter fillColor) |
void |
ChangeRoiPropertiesFromExpressionsAlgorithm.setFillColor(OptionalJIPipeExpressionParameter fillColor) |
void |
ChangeRoiPropertiesFromAnnotationsAlgorithm.setFillColor(OptionalTextAnnotationNameParameter fillColor) |
void |
ColorRoiByStatisticsAlgorithm.setFillMeasurement(MeasurementColumn fillMeasurement) |
void |
ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm.setIncludeAnnotations(boolean includeAnnotations) |
void |
ChangeRoiPropertiesAlgorithm.setLineColor(OptionalColorParameter lineColor) |
void |
ChangeRoiPropertiesFromExpressionsAlgorithm.setLineColor(OptionalJIPipeExpressionParameter lineColor) |
void |
ChangeRoiPropertiesFromAnnotationsAlgorithm.setLineColor(OptionalTextAnnotationNameParameter lineColor) |
void |
ColorRoiByStatisticsAlgorithm.setLineMeasurement(MeasurementColumn lineMeasurement) |
void |
ChangeRoiPropertiesAlgorithm.setLineWidth(OptionalDoubleParameter lineWidth) |
void |
ChangeRoiPropertiesFromExpressionsAlgorithm.setLineWidth(OptionalJIPipeExpressionParameter lineWidth) |
void |
ChangeRoiPropertiesFromAnnotationsAlgorithm.setLineWidth(OptionalTextAnnotationNameParameter lineWidth) |
void |
ColorRoiByStatisticsAlgorithm.setMapFillColor(OptionalColorMapParameter mapFillColor) |
void |
ColorRoiByNameAlgorithm.setMapFillColor(OptionalColorMapParameter mapFillColor) |
void |
ColorRoiByStatisticsAlgorithm.setMapLineColor(OptionalColorMapParameter mapLineColor) |
void |
ColorRoiByNameAlgorithm.setMapLineColor(OptionalColorMapParameter mapLineColor) |
void |
ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits) |
void |
ChangeRoiPropertiesFromExpressionsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits) |
void |
ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm.setMeasurements(ImageStatisticsSetParameter measurements) |
void |
ChangeRoiPropertiesFromExpressionsAlgorithm.setMeasurements(ImageStatisticsSetParameter measurements) |
void |
RoiFloodFillAlgorithm.setMode(RoiFloodFillAlgorithm.Mode mode) |
void |
OutlineRoiAlgorithm.setOutline(RoiOutline outline) |
void |
ChangeRoiPropertiesAlgorithm.setPositionC(OptionalIntegerParameter positionC) |
void |
ChangeRoiPropertiesFromExpressionsAlgorithm.setPositionC(OptionalJIPipeExpressionParameter positionC) |
void |
ChangeRoiPropertiesFromAnnotationsAlgorithm.setPositionC(OptionalTextAnnotationNameParameter positionC) |
void |
ChangeRoiPropertiesAlgorithm.setPositionT(OptionalIntegerParameter positionT) |
void |
ChangeRoiPropertiesFromExpressionsAlgorithm.setPositionT(OptionalJIPipeExpressionParameter positionT) |
void |
ChangeRoiPropertiesFromAnnotationsAlgorithm.setPositionT(OptionalTextAnnotationNameParameter positionT) |
void |
ChangeRoiPropertiesAlgorithm.setPositionX(OptionalDoubleParameter positionX) |
void |
ChangeRoiPropertiesFromExpressionsAlgorithm.setPositionX(OptionalJIPipeExpressionParameter positionX) |
void |
ChangeRoiPropertiesFromAnnotationsAlgorithm.setPositionX(OptionalTextAnnotationNameParameter positionX) |
void |
ChangeRoiPropertiesAlgorithm.setPositionY(OptionalDoubleParameter positionY) |
void |
ChangeRoiPropertiesFromExpressionsAlgorithm.setPositionY(OptionalJIPipeExpressionParameter positionY) |
void |
ChangeRoiPropertiesFromAnnotationsAlgorithm.setPositionY(OptionalTextAnnotationNameParameter positionY) |
void |
ChangeRoiPropertiesAlgorithm.setPositionZ(OptionalIntegerParameter positionZ) |
void |
ChangeRoiPropertiesFromExpressionsAlgorithm.setPositionZ(OptionalJIPipeExpressionParameter positionZ) |
void |
ChangeRoiPropertiesFromAnnotationsAlgorithm.setPositionZ(OptionalTextAnnotationNameParameter positionZ) |
void |
ChangeRoiPropertiesFromExpressionsAlgorithm.setRoiName(OptionalJIPipeExpressionParameter roiName) |
void |
ChangeRoiPropertiesAlgorithm.setRoiName(OptionalStringParameter roiName) |
void |
ChangeRoiPropertiesFromAnnotationsAlgorithm.setRoiName(OptionalTextAnnotationNameParameter roiName) |
void |
ScaleRoiAlgorithm.setScaleX(double scaleX) |
void |
ChangeRoiPropertiesAlgorithm.setScaleX(OptionalDoubleParameter scaleX) |
void |
ChangeRoiPropertiesFromExpressionsAlgorithm.setScaleX(OptionalJIPipeExpressionParameter scaleX) |
void |
ChangeRoiPropertiesFromAnnotationsAlgorithm.setScaleX(OptionalTextAnnotationNameParameter scaleX) |
void |
ScaleRoiAlgorithm.setScaleY(double scaleY) |
void |
ChangeRoiPropertiesAlgorithm.setScaleY(OptionalDoubleParameter scaleY) |
void |
ChangeRoiPropertiesFromExpressionsAlgorithm.setScaleY(OptionalJIPipeExpressionParameter scaleY) |
void |
ChangeRoiPropertiesFromAnnotationsAlgorithm.setScaleY(OptionalTextAnnotationNameParameter scaleY) |
void |
RoiFloodFillAlgorithm.setSmooth(boolean smooth) |
void |
ReorderRoiDimensionsAlgorithm.setTargetC(HyperstackDimension targetC) |
void |
ReorderRoiDimensionsAlgorithm.setTargetT(HyperstackDimension targetT) |
void |
ReorderRoiDimensionsAlgorithm.setTargetZ(HyperstackDimension targetZ) |
void |
RoiFloodFillAlgorithm.setTolerance(double tolerance) |
Modifier and Type | Method and Description |
---|---|
JIPipeExpressionParameter |
RemoveROIMetadataAlgorithm.getFilterExpression() |
OptionalStringParameter |
ExtractROIMetadataAlgorithm.getIndexColumn() |
String |
SetRoiMetadataByStatisticsAlgorithm.MetadataProperty.getKey() |
ImageStatisticsSetParameter |
SetRoiMetadataByStatisticsAlgorithm.getMeasurements() |
ParameterCollectionList |
SetRoiMetadataByStatisticsAlgorithm.getMetadataGenerators() |
OptionalStringParameter |
ExtractROIMetadataAlgorithm.getNameColumn() |
TableColumnSourceExpressionParameter |
SetROIMetadataFromTableAlgorithm.getRoiIndexColumn() |
JIPipeExpressionParameter |
SetRoiMetadataByStatisticsAlgorithm.MetadataProperty.getValue() |
boolean |
SetRoiMetadataByStatisticsAlgorithm.isClearBeforeWrite() |
boolean |
SetROIMetadataFromTableAlgorithm.isClearBeforeWrite() |
boolean |
SetROIMetadataFromTableAlgorithm.isIgnoreMissingRoiIndices() |
boolean |
SetRoiMetadataByStatisticsAlgorithm.isMeasureInPhysicalUnits() |
void |
SetRoiMetadataByStatisticsAlgorithm.setClearBeforeWrite(boolean clearBeforeWrite) |
void |
SetROIMetadataFromTableAlgorithm.setClearBeforeWrite(boolean clearBeforeWrite) |
void |
RemoveROIMetadataAlgorithm.setFilterExpression(JIPipeExpressionParameter filterExpression) |
void |
SetROIMetadataFromTableAlgorithm.setIgnoreMissingRoiIndices(boolean ignoreMissingRoiIndices) |
void |
ExtractROIMetadataAlgorithm.setIndexColumn(OptionalStringParameter indexColumn) |
void |
SetRoiMetadataByStatisticsAlgorithm.MetadataProperty.setKey(String key) |
void |
SetRoiMetadataByStatisticsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits) |
void |
SetRoiMetadataByStatisticsAlgorithm.setMeasurements(ImageStatisticsSetParameter measurements) |
void |
SetRoiMetadataByStatisticsAlgorithm.setMetadataGenerators(ParameterCollectionList metadataGenerators) |
void |
ExtractROIMetadataAlgorithm.setNameColumn(OptionalStringParameter nameColumn) |
void |
SetROIMetadataFromTableAlgorithm.setRoiIndexColumn(TableColumnSourceExpressionParameter roiIndexColumn) |
void |
SetRoiMetadataByStatisticsAlgorithm.MetadataProperty.setValue(JIPipeExpressionParameter value) |
Modifier and Type | Method and Description |
---|---|
JIPipeExpressionParameter |
RegisterRoiToImageByBrightnessAlgorithm.getRotationRange() |
JIPipeExpressionParameter |
RegisterRoiToImageByBrightnessAlgorithm.getScaleRange() |
int |
RegisterRoiToImageByBrightnessAlgorithm.getXyStep() |
void |
RegisterRoiToImageByBrightnessAlgorithm.setRotationRange(JIPipeExpressionParameter rotationRange) |
void |
RegisterRoiToImageByBrightnessAlgorithm.setScaleRange(JIPipeExpressionParameter scaleRange) |
void |
RegisterRoiToImageByBrightnessAlgorithm.setXyStep(int xyStep) |
Modifier and Type | Method and Description |
---|---|
StringQueryExpression |
SortRoiListByExpressionsAndMeasurementsAlgorithm.getExpression() |
OptionalColorMapParameter |
SortAndExtractRoiByStatisticsAlgorithm.getMapFillColor()
Deprecated.
|
OptionalColorMapParameter |
SortAndExtractRoiByStatisticsAlgorithm2.getMapFillColor() |
OptionalColorMapParameter |
SortAndExtractRoiByStatisticsAlgorithm.getMapLineColor()
Deprecated.
|
OptionalColorMapParameter |
SortAndExtractRoiByStatisticsAlgorithm2.getMapLineColor() |
ImageStatisticsSetParameter |
SortRoiListByExpressionsAndMeasurementsAlgorithm.getMeasurements() |
OptionalIntegerRange |
SortAndExtractRoiByStatisticsAlgorithm2.getSelectedIndices() |
NumericFunctionExpression |
SortAndExtractRoiByStatisticsAlgorithm.getSelection()
Deprecated.
|
MeasurementColumnSortOrder.List |
SortAndExtractRoiByStatisticsAlgorithm.getSortOrderList()
Deprecated.
|
MeasurementColumnSortOrder.List |
SortAndExtractRoiByStatisticsAlgorithm2.getSortOrderList() |
boolean |
SortAndExtractRoiByStatisticsAlgorithm.isAutoClamp()
Deprecated.
|
boolean |
SortAndExtractRoiByStatisticsAlgorithm2.isAutoClamp() |
boolean |
SortRoiListByExpressionsAndMeasurementsAlgorithm.isIncludeAnnotations() |
boolean |
SortRoiListByExpressionsAndMeasurementsAlgorithm.isMeasureInPhysicalUnits() |
boolean |
SortRoiListByExpressionsAndMeasurementsAlgorithm.isReverseSortOrder() |
void |
SortAndExtractRoiByStatisticsAlgorithm.setAutoClamp(boolean autoClamp)
Deprecated.
|
void |
SortAndExtractRoiByStatisticsAlgorithm2.setAutoClamp(boolean autoClamp) |
void |
SortRoiListByExpressionsAndMeasurementsAlgorithm.setExpression(StringQueryExpression expression) |
void |
SortRoiListByExpressionsAndMeasurementsAlgorithm.setIncludeAnnotations(boolean includeAnnotations) |
void |
SortAndExtractRoiByStatisticsAlgorithm.setMapFillColor(OptionalColorMapParameter mapFillColor)
Deprecated.
|
void |
SortAndExtractRoiByStatisticsAlgorithm2.setMapFillColor(OptionalColorMapParameter mapFillColor) |
void |
SortAndExtractRoiByStatisticsAlgorithm.setMapLineColor(OptionalColorMapParameter mapLineColor)
Deprecated.
|
void |
SortAndExtractRoiByStatisticsAlgorithm2.setMapLineColor(OptionalColorMapParameter mapLineColor) |
void |
SortRoiListByExpressionsAndMeasurementsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits) |
void |
SortRoiListByExpressionsAndMeasurementsAlgorithm.setMeasurements(ImageStatisticsSetParameter measurements) |
void |
SortRoiListByExpressionsAndMeasurementsAlgorithm.setReverseSortOrder(boolean reverseSortOrder) |
void |
SortAndExtractRoiByStatisticsAlgorithm2.setSelectedIndices(OptionalIntegerRange selectedIndices) |
void |
SortAndExtractRoiByStatisticsAlgorithm.setSelection(NumericFunctionExpression selection)
Deprecated.
|
void |
SortAndExtractRoiByStatisticsAlgorithm.setSortOrderList(MeasurementColumnSortOrder.List sortOrderList)
Deprecated.
|
void |
SortAndExtractRoiByStatisticsAlgorithm2.setSortOrderList(MeasurementColumnSortOrder.List sortOrderList) |
Modifier and Type | Method and Description |
---|---|
JIPipeExpressionParameter |
ExplodeRoiAlgorithm.getAnnotationValue() |
OptionalStringParameter |
ExplodeRoiAlgorithm.getGeneratedAnnotation() |
void |
ExplodeRoiAlgorithm.setAnnotationValue(JIPipeExpressionParameter annotationValue) |
void |
ExplodeRoiAlgorithm.setGeneratedAnnotation(OptionalStringParameter generatedAnnotation) |
Modifier and Type | Method and Description |
---|---|
Neighborhood2D3D |
SeededWatershedSegmentationAlgorithm.getConnectivity() |
Neighborhood2D3D |
ClassicWatershedSegmentationAlgorithm.getConnectivity() |
double |
RidgeDetector2DAlgorithm.getContrastHigh() |
double |
RidgeDetector2DAlgorithm.getContrastLow() |
OptionalDoubleParameter |
ClassicWatershedSegmentationAlgorithm.getCustomHMax() |
OptionalDoubleParameter |
ClassicWatershedSegmentationAlgorithm.getCustomHMin() |
double |
RidgeDetector2DAlgorithm.getLineWidth() |
double |
RidgeDetector2DAlgorithm.getLowerThreshold() |
double |
RidgeDetector2DAlgorithm.getMaxLength() |
double |
RidgeDetector2DAlgorithm.getMinLength() |
de.biomedical_imaging.ij.steger.OverlapOption |
RidgeDetector2DAlgorithm.getOverlapResolution() |
double |
RidgeDetector2DAlgorithm.getSigma() |
ImageROITargetArea |
SeededWatershedSegmentationAlgorithm.getTargetArea() |
ImageROITargetArea |
ClassicWatershedSegmentationAlgorithm.getTargetArea() |
double |
RidgeDetector2DAlgorithm.getUpperThreshold() |
boolean |
SeededWatershedSegmentationAlgorithm.isApplyPerSlice() |
boolean |
ClassicWatershedSegmentationAlgorithm.isApplyPerSlice() |
boolean |
RidgeDetector2DAlgorithm.isDarkLine() |
boolean |
RidgeDetector2DAlgorithm.isDoCorrectPosition() |
boolean |
RidgeDetector2DAlgorithm.isDoEstimateWidth() |
boolean |
RidgeDetector2DAlgorithm.isDoExtendLine() |
boolean |
RidgeDetector2DAlgorithm.isEstimateHighThreshold() |
boolean |
RidgeDetector2DAlgorithm.isEstimateLowThreshold() |
boolean |
RidgeDetector2DAlgorithm.isEstimateSigma() |
boolean |
SeededWatershedSegmentationAlgorithm.isGetDams() |
void |
SeededWatershedSegmentationAlgorithm.setApplyPerSlice(boolean applyPerSlice) |
void |
ClassicWatershedSegmentationAlgorithm.setApplyPerSlice(boolean applyPerSlice) |
void |
SeededWatershedSegmentationAlgorithm.setConnectivity(Neighborhood2D3D connectivity) |
void |
ClassicWatershedSegmentationAlgorithm.setConnectivity(Neighborhood2D3D connectivity) |
void |
RidgeDetector2DAlgorithm.setContrastHigh(double contrastHigh) |
void |
RidgeDetector2DAlgorithm.setContrastLow(double contrastLow) |
void |
ClassicWatershedSegmentationAlgorithm.setCustomHMax(OptionalDoubleParameter customHMax) |
void |
ClassicWatershedSegmentationAlgorithm.setCustomHMin(OptionalDoubleParameter customHMin) |
void |
RidgeDetector2DAlgorithm.setDarkLine(boolean darkLine) |
void |
RidgeDetector2DAlgorithm.setDoCorrectPosition(boolean doCorrectPosition) |
void |
RidgeDetector2DAlgorithm.setDoEstimateWidth(boolean doEstimateWidth) |
void |
RidgeDetector2DAlgorithm.setDoExtendLine(boolean doExtendLine) |
void |
RidgeDetector2DAlgorithm.setEstimateHighThreshold(boolean estimateHighThreshold) |
void |
RidgeDetector2DAlgorithm.setEstimateLowThreshold(boolean estimateLowThreshold) |
void |
RidgeDetector2DAlgorithm.setEstimateSigma(boolean estimateSigma) |
void |
SeededWatershedSegmentationAlgorithm.setGetDams(boolean getDams) |
void |
RidgeDetector2DAlgorithm.setLineWidth(double lineWidth) |
void |
RidgeDetector2DAlgorithm.setLowerThreshold(double lowerThreshold) |
void |
RidgeDetector2DAlgorithm.setMaxLength(double maxLength) |
void |
RidgeDetector2DAlgorithm.setMinLength(double minLength) |
void |
RidgeDetector2DAlgorithm.setOverlapResolution(de.biomedical_imaging.ij.steger.OverlapOption overlapResolution) |
void |
RidgeDetector2DAlgorithm.setSigma(double sigma) |
void |
SeededWatershedSegmentationAlgorithm.setTargetArea(ImageROITargetArea targetArea) |
void |
ClassicWatershedSegmentationAlgorithm.setTargetArea(ImageROITargetArea targetArea) |
void |
RidgeDetector2DAlgorithm.setUpperThreshold(double upperThreshold) |
Modifier and Type | Method and Description |
---|---|
OptionalStringParameter |
KeyValueThresholdPartitionAveragesGenerator.getClass0CountColumnName() |
OptionalStringParameter |
KeyValueThresholdPartitionAveragesGenerator.getClass0MeanColumnName() |
OptionalStringParameter |
KeyValueThresholdPartitionAveragesGenerator.getClass0SumColumnName() |
OptionalStringParameter |
KeyValueThresholdPartitionAveragesGenerator.getClass1CountColumnName() |
OptionalStringParameter |
KeyValueThresholdPartitionAveragesGenerator.getClass1MeanColumnName() |
OptionalStringParameter |
KeyValueThresholdPartitionAveragesGenerator.getClass1SumColumnName() |
OptionalStringParameter |
KeyValueAveragesGenerator.getCountColumnName() |
ParameterCollectionList |
KeyValueThresholdPartitionGenerator.getGeneratedColumns() |
JIPipeExpressionParameter |
KeyValueHistogramGenerator.getIntegrationFunction() |
JIPipeExpressionParameter |
KeyValueThresholdStatisticsGenerator.getIntegrationFunctionBackground() |
TableColumnIntegrationParameter |
FastKeyValueThresholdStatisticsGenerator.getIntegrationFunctionBackground() |
JIPipeExpressionParameter |
KeyValueThresholdStatisticsGenerator.getIntegrationFunctionForeground() |
TableColumnIntegrationParameter |
FastKeyValueThresholdStatisticsGenerator.getIntegrationFunctionForeground() |
OptionalStringParameter |
KeyValueThresholdPartitionAveragesGenerator.getKeyColumnName() |
OptionalStringParameter |
KeyValueAveragesGenerator.getKeyColumnName() |
OptionalStringParameter |
KeyValueAveragesGenerator.getMeanColumnName() |
HistogramGenerator.MultiChannelMode |
HistogramGenerator.getMultiChannelMode() |
String |
KeyValueThresholdPartitionGenerator.GeneratedColumn.getName() |
String |
AverageKeyValueThresholdStatisticsGenerator.getOutputBackgroundColumn() |
String |
KeyValueThresholdStatisticsGenerator.getOutputBackgroundColumn() |
String |
FastKeyValueThresholdStatisticsGenerator.getOutputBackgroundColumn() |
String |
AverageKeyValueThresholdStatisticsGenerator.getOutputForegroundColumn() |
String |
KeyValueThresholdStatisticsGenerator.getOutputForegroundColumn() |
String |
FastKeyValueThresholdStatisticsGenerator.getOutputForegroundColumn() |
String |
KeyValueHistogramGenerator.getOutputKeyColumn() |
String |
AverageKeyValueThresholdStatisticsGenerator.getOutputThresholdColumn() |
String |
KeyValueThresholdStatisticsGenerator.getOutputThresholdColumn() |
String |
FastKeyValueThresholdStatisticsGenerator.getOutputThresholdColumn() |
String |
KeyValueHistogramGenerator.getOutputValueColumn() |
String |
HistogramGenerator.getSliceAnnotation() |
ImageROITargetArea |
KeyValueThresholdPartitionAveragesGenerator.getSourceArea() |
ImageROITargetArea |
KeyValueAveragesGenerator.getSourceArea() |
ImageROITargetArea |
KeyValueHistogramGenerator.getSourceArea() |
ImageROITargetArea |
KeyValueThresholdPartitionGenerator.getSourceArea() |
OptionalStringParameter |
KeyValueAveragesGenerator.getSumColumnName() |
JIPipeExpressionParameter |
KeyValueThresholdPartitionGenerator.GeneratedColumn.getValue() |
boolean |
HistogramGenerator.isApplyPerSlice() |
boolean |
KeyValueHistogramGenerator.isCumulative() |
boolean |
AverageKeyValueThresholdStatisticsGenerator.isInvertThreshold() |
boolean |
KeyValueThresholdStatisticsGenerator.isInvertThreshold() |
boolean |
FastKeyValueThresholdStatisticsGenerator.isInvertThreshold() |
boolean |
HistogramGenerator.isNormalize() |
boolean |
KeyValueHistogramGenerator.isNormalize() |
boolean |
KeyValueThresholdPartitionGenerator.GeneratedColumn.isSkipEmpty() |
void |
HistogramGenerator.setApplyPerSlice(boolean applyPerSlice) |
void |
KeyValueThresholdPartitionAveragesGenerator.setClass0CountColumnName(OptionalStringParameter class0CountColumnName) |
void |
KeyValueThresholdPartitionAveragesGenerator.setClass0MeanColumnName(OptionalStringParameter class0MeanColumnName) |
void |
KeyValueThresholdPartitionAveragesGenerator.setClass0SumColumnName(OptionalStringParameter class0SumColumnName) |
void |
KeyValueThresholdPartitionAveragesGenerator.setClass1CountColumnName(OptionalStringParameter class1CountColumnName) |
void |
KeyValueThresholdPartitionAveragesGenerator.setClass1MeanColumnName(OptionalStringParameter class1MeanColumnName) |
void |
KeyValueThresholdPartitionAveragesGenerator.setClass1SumColumnName(OptionalStringParameter class1SumColumnName) |
void |
KeyValueAveragesGenerator.setCountColumnName(OptionalStringParameter countColumnName) |
void |
KeyValueHistogramGenerator.setCumulative(boolean cumulative) |
void |
KeyValueThresholdPartitionGenerator.setGeneratedColumns(ParameterCollectionList generatedColumns) |
void |
KeyValueHistogramGenerator.setIntegrationFunction(JIPipeExpressionParameter integrationFunction) |
void |
KeyValueThresholdStatisticsGenerator.setIntegrationFunctionBackground(JIPipeExpressionParameter integrationFunctionBackground) |
void |
FastKeyValueThresholdStatisticsGenerator.setIntegrationFunctionBackground(TableColumnIntegrationParameter integrationFunctionBackground) |
void |
KeyValueThresholdStatisticsGenerator.setIntegrationFunctionForeground(JIPipeExpressionParameter integrationFunctionForeground) |
void |
FastKeyValueThresholdStatisticsGenerator.setIntegrationFunctionForeground(TableColumnIntegrationParameter integrationFunctionForeground) |
void |
AverageKeyValueThresholdStatisticsGenerator.setInvertThreshold(boolean invertThreshold) |
void |
KeyValueThresholdStatisticsGenerator.setInvertThreshold(boolean invertThreshold) |
void |
FastKeyValueThresholdStatisticsGenerator.setInvertThreshold(boolean invertThreshold) |
void |
KeyValueThresholdPartitionAveragesGenerator.setKeyColumnName(OptionalStringParameter keyColumnName) |
void |
KeyValueAveragesGenerator.setKeyColumnName(OptionalStringParameter keyColumnName) |
void |
KeyValueAveragesGenerator.setMeanColumnName(OptionalStringParameter meanColumnName) |
void |
HistogramGenerator.setMultiChannelMode(HistogramGenerator.MultiChannelMode multiChannelMode) |
void |
KeyValueThresholdPartitionGenerator.GeneratedColumn.setName(String name) |
void |
HistogramGenerator.setNormalize(boolean normalize) |
void |
KeyValueHistogramGenerator.setNormalize(boolean normalize) |
void |
AverageKeyValueThresholdStatisticsGenerator.setOutputBackgroundColumn(String outputBackgroundColumn) |
void |
KeyValueThresholdStatisticsGenerator.setOutputBackgroundColumn(String outputBackgroundColumn) |
void |
FastKeyValueThresholdStatisticsGenerator.setOutputBackgroundColumn(String outputBackgroundColumn) |
void |
AverageKeyValueThresholdStatisticsGenerator.setOutputForegroundColumn(String outputForegroundColumn) |
void |
KeyValueThresholdStatisticsGenerator.setOutputForegroundColumn(String outputForegroundColumn) |
void |
FastKeyValueThresholdStatisticsGenerator.setOutputForegroundColumn(String outputForegroundColumn) |
void |
KeyValueHistogramGenerator.setOutputKeyColumn(String outputKeyColumn) |
void |
AverageKeyValueThresholdStatisticsGenerator.setOutputThresholdColumn(String outputThresholdColumn) |
void |
KeyValueThresholdStatisticsGenerator.setOutputThresholdColumn(String outputThresholdColumn) |
void |
FastKeyValueThresholdStatisticsGenerator.setOutputThresholdColumn(String outputThresholdColumn) |
void |
KeyValueHistogramGenerator.setOutputValueColumn(String outputValueColumn) |
void |
KeyValueThresholdPartitionGenerator.GeneratedColumn.setSkipEmpty(boolean skipEmpty) |
void |
HistogramGenerator.setSliceAnnotation(String sliceAnnotation) |
void |
KeyValueThresholdPartitionAveragesGenerator.setSourceArea(ImageROITargetArea sourceArea) |
void |
KeyValueAveragesGenerator.setSourceArea(ImageROITargetArea sourceArea) |
void |
KeyValueHistogramGenerator.setSourceArea(ImageROITargetArea sourceArea) |
void |
KeyValueThresholdPartitionGenerator.setSourceArea(ImageROITargetArea sourceArea) |
void |
KeyValueAveragesGenerator.setSumColumnName(OptionalStringParameter sumColumnName) |
void |
KeyValueThresholdPartitionGenerator.GeneratedColumn.setValue(JIPipeExpressionParameter value) |
Modifier and Type | Method and Description |
---|---|
int |
LinesHoughDetection2DAlgorithm.getAccumulatorThreshold() |
AutoThreshold2DAlgorithm |
HessianSegmentation2DAlgorithm.getAutoThresholding() |
AutoThreshold2DAlgorithm |
InternalGradientSegmentation2DAlgorithm.getAutoThresholding() |
AutoThreshold2DAlgorithm |
BrightSpotsSegmentation2DAlgorithm.getAutoThresholding() |
int |
CircularHoughSegmentation2DAlgorithm.getBandwidth() |
CLAHEContrastEnhancer |
InternalGradientSegmentation2DAlgorithm.getContrastEnhancer() |
int |
HessianSegmentation2DAlgorithm.getDespeckleIterations() |
int |
BrightSpotsSegmentation2DAlgorithm.getDilationErodeSteps() |
int |
InternalGradientSegmentation2DAlgorithm.getDilationIterations() |
EigenvalueSelection2D |
HessianSegmentation2DAlgorithm.getEigenvalueSelection() |
int |
InternalGradientSegmentation2DAlgorithm.getErosionIterations() |
double |
BrightSpotsSegmentation2DAlgorithm.getGaussianSigma() |
double |
InternalGradientSegmentation2DAlgorithm.getGaussSigma() |
double |
HessianSegmentation2DAlgorithm.getGradientRadius() |
int |
InternalGradientSegmentation2DAlgorithm.getInternalGradientRadius() |
int |
CircularHoughSegmentation2DAlgorithm.getLocalRadius() |
int |
CircularHoughSegmentation2DAlgorithm.getMaxNumCircles() |
int |
FastCircularHoughSegmentation2DAlgorithm.getMaxRadius() |
int |
CircularHoughSegmentation2DAlgorithm.getMaxRadius() |
float |
ManualThreshold32F2DAlgorithm.getMaxThreshold() |
OptionalTextAnnotationNameParameter |
ManualThreshold8U2DAlgorithm.getMaxThresholdAnnotation() |
OptionalTextAnnotationNameParameter |
ManualThreshold32F2DAlgorithm.getMaxThresholdAnnotation() |
OptionalTextAnnotationNameParameter |
ManualThreshold16U2DAlgorithm.getMaxThresholdAnnotation() |
OptionalTextAnnotationNameParameter |
ThresholdByAnnotation2DAlgorithm.getMaxThresholdAnnotation() |
CustomAutoThreshold2D16Uv2Algorithm.ThresholdParameters |
CustomAutoThreshold2D16Uv2Algorithm.getMaxThresholdParameters() |
CustomAutoThreshold2D8Uv2Algorithm.ThresholdParameters |
CustomAutoThreshold2D8Uv2Algorithm.getMaxThresholdParameters() |
CustomAutoThreshold2D32Fv2Algorithm.ThresholdParameters |
CustomAutoThreshold2D32Fv2Algorithm.getMaxThresholdParameters() |
ij.process.AutoThresholder.Method |
AutoThreshold2DAlgorithm.getMethod() |
int |
CircularHoughSegmentation2DAlgorithm.getMinNumCircles() |
int |
FastCircularHoughSegmentation2DAlgorithm.getMinRadius() |
int |
CircularHoughSegmentation2DAlgorithm.getMinRadius() |
double |
FastCircularHoughSegmentation2DAlgorithm.getMinScore() |
float |
ManualThreshold32F2DAlgorithm.getMinThreshold() |
OptionalTextAnnotationNameParameter |
ManualThreshold8U2DAlgorithm.getMinThresholdAnnotation() |
OptionalTextAnnotationNameParameter |
ManualThreshold32F2DAlgorithm.getMinThresholdAnnotation() |
OptionalTextAnnotationNameParameter |
ManualThreshold16U2DAlgorithm.getMinThresholdAnnotation() |
OptionalTextAnnotationNameParameter |
ThresholdByAnnotation2DAlgorithm.getMinThresholdAnnotation() |
CustomAutoThreshold2D16Uv2Algorithm.ThresholdParameters |
CustomAutoThreshold2D16Uv2Algorithm.getMinThresholdParameters() |
CustomAutoThreshold2D8Uv2Algorithm.ThresholdParameters |
CustomAutoThreshold2D8Uv2Algorithm.getMinThresholdParameters() |
CustomAutoThreshold2D32Fv2Algorithm.ThresholdParameters |
CustomAutoThreshold2D32Fv2Algorithm.getMinThresholdParameters() |
double |
PercentileThreshold8U2DAlgorithm.getPercentile() |
OptionalFloatParameter |
LinesHoughDetection2DAlgorithm.getPixelThreshold() |
int |
CircularHoughSegmentation2DAlgorithm.getRadiusIncrement() |
double |
CircularHoughSegmentation2DAlgorithm.getRatio() |
int |
CircularHoughSegmentation2DAlgorithm.getResolution() |
JIPipeExpressionParameter |
LinesHoughDetection2DAlgorithm.getRoiNameExpression() |
int |
BrightSpotsSegmentation2DAlgorithm.getRollingBallRadius() |
OptionalIntegerParameter |
LinesHoughDetection2DAlgorithm.getSelectTopN() |
double |
HessianSegmentation2DAlgorithm.getSmoothing() |
ImageROITargetArea |
CustomAutoThreshold2D8UAlgorithm.getSourceArea() |
ImageROITargetArea |
CustomAutoThreshold2D16Uv2Algorithm.getSourceArea() |
ImageROITargetArea |
CustomAutoThreshold2D16UAlgorithm.getSourceArea() |
ImageROITargetArea |
CustomAutoThreshold2D8Uv2Algorithm.getSourceArea() |
ImageROITargetArea |
CustomAutoThreshold2D32FAlgorithm.getSourceArea() |
ImageROITargetArea |
AutoThreshold2DAlgorithm.getSourceArea() |
ImageROITargetArea |
CustomAutoThreshold2D32Fv2Algorithm.getSourceArea() |
IntNumberRangeParameter |
ManualThreshold8U2DAlgorithm.getThreshold() |
double |
CircularHoughSegmentation2DAlgorithm.getThreshold() |
IntNumberRangeParameter |
ManualThreshold16U2DAlgorithm.getThreshold() |
OptionalTextAnnotationNameParameter |
CustomAutoThreshold2D8UAlgorithm.getThresholdAnnotation() |
OptionalTextAnnotationNameParameter |
CustomAutoThreshold2D16Uv2Algorithm.ThresholdParameters.getThresholdAnnotation() |
OptionalTextAnnotationNameParameter |
CustomAutoThreshold2D16UAlgorithm.getThresholdAnnotation() |
OptionalTextAnnotationNameParameter |
CustomAutoThreshold2D8Uv2Algorithm.ThresholdParameters.getThresholdAnnotation() |
OptionalTextAnnotationNameParameter |
CustomAutoThreshold2D32FAlgorithm.getThresholdAnnotation() |
OptionalTextAnnotationNameParameter |
AutoThreshold2DAlgorithm.getThresholdAnnotation() |
OptionalTextAnnotationNameParameter |
CustomAutoThreshold2D32Fv2Algorithm.ThresholdParameters.getThresholdAnnotation() |
JIPipeTextAnnotationMergeMode |
CustomAutoThreshold2D8UAlgorithm.getThresholdAnnotationStrategy() |
JIPipeTextAnnotationMergeMode |
ManualThreshold8U2DAlgorithm.getThresholdAnnotationStrategy() |
JIPipeTextAnnotationMergeMode |
CustomAutoThreshold2D16Uv2Algorithm.getThresholdAnnotationStrategy() |
JIPipeTextAnnotationMergeMode |
CustomAutoThreshold2D16UAlgorithm.getThresholdAnnotationStrategy() |
JIPipeTextAnnotationMergeMode |
CustomAutoThreshold2D8Uv2Algorithm.getThresholdAnnotationStrategy() |
JIPipeTextAnnotationMergeMode |
CustomAutoThreshold2D32FAlgorithm.getThresholdAnnotationStrategy() |
JIPipeTextAnnotationMergeMode |
AutoThreshold2DAlgorithm.getThresholdAnnotationStrategy() |
JIPipeTextAnnotationMergeMode |
ManualThreshold32F2DAlgorithm.getThresholdAnnotationStrategy() |
JIPipeTextAnnotationMergeMode |
ManualThreshold16U2DAlgorithm.getThresholdAnnotationStrategy() |
JIPipeTextAnnotationMergeMode |
CustomAutoThreshold2D32Fv2Algorithm.getThresholdAnnotationStrategy() |
JIPipeExpressionParameter |
CustomAutoThreshold2D8UAlgorithm.getThresholdCalculationExpression() |
JIPipeExpressionParameter |
CustomAutoThreshold2D16Uv2Algorithm.ThresholdParameters.getThresholdCalculationExpression() |
JIPipeExpressionParameter |
CustomAutoThreshold2D16UAlgorithm.getThresholdCalculationExpression() |
JIPipeExpressionParameter |
CustomAutoThreshold2D8Uv2Algorithm.ThresholdParameters.getThresholdCalculationExpression() |
JIPipeExpressionParameter |
CustomAutoThreshold2D32FAlgorithm.getThresholdCalculationExpression() |
JIPipeExpressionParameter |
CustomAutoThreshold2D32Fv2Algorithm.ThresholdParameters.getThresholdCalculationExpression() |
JIPipeExpressionParameter |
CustomAutoThreshold2D8UAlgorithm.getThresholdCombinationExpression() |
JIPipeExpressionParameter |
CustomAutoThreshold2D16Uv2Algorithm.ThresholdParameters.getThresholdCombinationExpression() |
JIPipeExpressionParameter |
CustomAutoThreshold2D16UAlgorithm.getThresholdCombinationExpression() |
JIPipeExpressionParameter |
CustomAutoThreshold2D8Uv2Algorithm.ThresholdParameters.getThresholdCombinationExpression() |
JIPipeExpressionParameter |
CustomAutoThreshold2D32FAlgorithm.getThresholdCombinationExpression() |
JIPipeExpressionParameter |
AutoThreshold2DAlgorithm.getThresholdCombinationExpression() |
JIPipeExpressionParameter |
CustomAutoThreshold2D32Fv2Algorithm.ThresholdParameters.getThresholdCombinationExpression() |
AutoThreshold2DAlgorithm.SliceThresholdMode |
CustomAutoThreshold2D8UAlgorithm.getThresholdMode() |
AutoThreshold2DAlgorithm.SliceThresholdMode |
CustomAutoThreshold2D16Uv2Algorithm.getThresholdMode() |
AutoThreshold2DAlgorithm.SliceThresholdMode |
CustomAutoThreshold2D16UAlgorithm.getThresholdMode() |
AutoThreshold2DAlgorithm.SliceThresholdMode |
CustomAutoThreshold2D8Uv2Algorithm.getThresholdMode() |
AutoThreshold2DAlgorithm.SliceThresholdMode |
CustomAutoThreshold2D32FAlgorithm.getThresholdMode() |
AutoThreshold2DAlgorithm.SliceThresholdMode |
AutoThreshold2DAlgorithm.getThresholdMode() |
AutoThreshold2DAlgorithm.SliceThresholdMode |
CustomAutoThreshold2D32Fv2Algorithm.getThresholdMode() |
boolean |
CustomAutoThreshold2D8UAlgorithm.isAccessPixels() |
boolean |
CustomAutoThreshold2D16Uv2Algorithm.isAccessPixels() |
boolean |
CustomAutoThreshold2D16UAlgorithm.isAccessPixels() |
boolean |
CustomAutoThreshold2D8Uv2Algorithm.isAccessPixels() |
boolean |
CustomAutoThreshold2D32FAlgorithm.isAccessPixels() |
boolean |
CustomAutoThreshold2D32Fv2Algorithm.isAccessPixels() |
boolean |
HessianSegmentation2DAlgorithm.isApplyDespeckle() |
boolean |
InternalGradientSegmentation2DAlgorithm.isApplyFirstCLAHE() |
boolean |
InternalGradientSegmentation2DAlgorithm.isApplyGaussian() |
boolean |
HessianSegmentation2DAlgorithm.isApplyInternalGradient() |
boolean |
InternalGradientSegmentation2DAlgorithm.isApplySecondCLAHE() |
boolean |
HessianSegmentation2DAlgorithm.isCompareAbsolute() |
boolean |
AutoThreshold2DAlgorithm.isDarkBackground() |
boolean |
CircularHoughSegmentation2DAlgorithm.isLocal() |
void |
CustomAutoThreshold2D8UAlgorithm.setAccessPixels(boolean accessPixels) |
void |
CustomAutoThreshold2D16Uv2Algorithm.setAccessPixels(boolean accessPixels) |
void |
CustomAutoThreshold2D16UAlgorithm.setAccessPixels(boolean accessPixels) |
void |
CustomAutoThreshold2D8Uv2Algorithm.setAccessPixels(boolean accessPixels) |
void |
CustomAutoThreshold2D32FAlgorithm.setAccessPixels(boolean accessPixels) |
void |
CustomAutoThreshold2D32Fv2Algorithm.setAccessPixels(boolean accessPixels) |
void |
LinesHoughDetection2DAlgorithm.setAccumulatorThreshold(int accumulatorThreshold) |
void |
HessianSegmentation2DAlgorithm.setApplyDespeckle(boolean applyDespeckle) |
void |
InternalGradientSegmentation2DAlgorithm.setApplyFirstCLAHE(boolean applyFirstCLAHE) |
void |
InternalGradientSegmentation2DAlgorithm.setApplyGaussian(boolean applyGaussian) |
void |
HessianSegmentation2DAlgorithm.setApplyInternalGradient(boolean applyInternalGradient) |
void |
InternalGradientSegmentation2DAlgorithm.setApplySecondCLAHE(boolean applySecondCLAHE) |
void |
CircularHoughSegmentation2DAlgorithm.setBandwidth(int bandwidth) |
void |
HessianSegmentation2DAlgorithm.setCompareAbsolute(boolean compareAbsolute) |
void |
AutoThreshold2DAlgorithm.setDarkBackground(boolean darkBackground) |
void |
HessianSegmentation2DAlgorithm.setDespeckleIterations(int despeckleIterations) |
void |
BrightSpotsSegmentation2DAlgorithm.setDilationErodeSteps(int dilationErodeSteps) |
void |
InternalGradientSegmentation2DAlgorithm.setDilationIterations(int dilationIterations) |
void |
HessianSegmentation2DAlgorithm.setEigenvalueSelection(EigenvalueSelection2D eigenvalueSelection) |
void |
InternalGradientSegmentation2DAlgorithm.setErosionIterations(int erosionIterations) |
void |
BrightSpotsSegmentation2DAlgorithm.setGaussianSigma(double gaussianSigma) |
void |
InternalGradientSegmentation2DAlgorithm.setGaussSigma(double gaussSigma) |
void |
HessianSegmentation2DAlgorithm.setGradientRadius(double gradientRadius) |
void |
InternalGradientSegmentation2DAlgorithm.setInternalGradientRadius(int internalGradientRadius) |
void |
CircularHoughSegmentation2DAlgorithm.setLocal(boolean local) |
void |
CircularHoughSegmentation2DAlgorithm.setLocalRadius(int localRadius) |
void |
CircularHoughSegmentation2DAlgorithm.setMaxNumCircles(int maxNumCircles) |
void |
FastCircularHoughSegmentation2DAlgorithm.setMaxRadius(int maxRadius) |
void |
CircularHoughSegmentation2DAlgorithm.setMaxRadius(int maxRadius) |
void |
ManualThreshold32F2DAlgorithm.setMaxThreshold(float maxThreshold) |
void |
ManualThreshold8U2DAlgorithm.setMaxThresholdAnnotation(OptionalTextAnnotationNameParameter maxThresholdAnnotation) |
void |
ManualThreshold32F2DAlgorithm.setMaxThresholdAnnotation(OptionalTextAnnotationNameParameter maxThresholdAnnotation) |
void |
ManualThreshold16U2DAlgorithm.setMaxThresholdAnnotation(OptionalTextAnnotationNameParameter maxThresholdAnnotation) |
void |
ThresholdByAnnotation2DAlgorithm.setMaxThresholdAnnotation(OptionalTextAnnotationNameParameter maxThresholdAnnotation) |
void |
AutoThreshold2DAlgorithm.setMethod(ij.process.AutoThresholder.Method method) |
void |
CircularHoughSegmentation2DAlgorithm.setMinNumCircles(int minNumCircles) |
void |
FastCircularHoughSegmentation2DAlgorithm.setMinRadius(int minRadius) |
void |
CircularHoughSegmentation2DAlgorithm.setMinRadius(int minRadius) |
void |
FastCircularHoughSegmentation2DAlgorithm.setMinScore(double minScore) |
void |
ManualThreshold32F2DAlgorithm.setMinThreshold(float minThreshold) |
void |
ManualThreshold8U2DAlgorithm.setMinThresholdAnnotation(OptionalTextAnnotationNameParameter minThresholdAnnotation) |
void |
ManualThreshold32F2DAlgorithm.setMinThresholdAnnotation(OptionalTextAnnotationNameParameter minThresholdAnnotation) |
void |
ManualThreshold16U2DAlgorithm.setMinThresholdAnnotation(OptionalTextAnnotationNameParameter minThresholdAnnotation) |
void |
ThresholdByAnnotation2DAlgorithm.setMinThresholdAnnotation(OptionalTextAnnotationNameParameter minThresholdAnnotation) |
void |
PercentileThreshold8U2DAlgorithm.setPercentile(double percentile) |
void |
LinesHoughDetection2DAlgorithm.setPixelThreshold(OptionalFloatParameter pixelThreshold) |
void |
CircularHoughSegmentation2DAlgorithm.setRadiusIncrement(int radiusIncrement) |
void |
CircularHoughSegmentation2DAlgorithm.setRatio(double ratio) |
void |
CircularHoughSegmentation2DAlgorithm.setResolution(int resolution) |
void |
LinesHoughDetection2DAlgorithm.setRoiNameExpression(JIPipeExpressionParameter roiNameExpression) |
void |
BrightSpotsSegmentation2DAlgorithm.setRollingBallRadius(int rollingBallRadius) |
void |
LinesHoughDetection2DAlgorithm.setSelectTopN(OptionalIntegerParameter selectTopN) |
void |
HessianSegmentation2DAlgorithm.setSmoothing(double smoothing) |
void |
CustomAutoThreshold2D8UAlgorithm.setSourceArea(ImageROITargetArea sourceArea) |
void |
CustomAutoThreshold2D16Uv2Algorithm.setSourceArea(ImageROITargetArea sourceArea) |
void |
CustomAutoThreshold2D16UAlgorithm.setSourceArea(ImageROITargetArea sourceArea) |
void |
CustomAutoThreshold2D8Uv2Algorithm.setSourceArea(ImageROITargetArea sourceArea) |
void |
CustomAutoThreshold2D32FAlgorithm.setSourceArea(ImageROITargetArea sourceArea) |
void |
AutoThreshold2DAlgorithm.setSourceArea(ImageROITargetArea sourceArea) |
void |
CustomAutoThreshold2D32Fv2Algorithm.setSourceArea(ImageROITargetArea sourceArea) |
void |
CircularHoughSegmentation2DAlgorithm.setThreshold(double threshold) |
void |
ManualThreshold8U2DAlgorithm.setThreshold(IntNumberRangeParameter threshold) |
void |
ManualThreshold16U2DAlgorithm.setThreshold(IntNumberRangeParameter threshold) |
void |
CustomAutoThreshold2D8UAlgorithm.setThresholdAnnotation(OptionalTextAnnotationNameParameter thresholdAnnotation) |
void |
CustomAutoThreshold2D16Uv2Algorithm.ThresholdParameters.setThresholdAnnotation(OptionalTextAnnotationNameParameter thresholdAnnotation) |
void |
CustomAutoThreshold2D16UAlgorithm.setThresholdAnnotation(OptionalTextAnnotationNameParameter thresholdAnnotation) |
void |
CustomAutoThreshold2D8Uv2Algorithm.ThresholdParameters.setThresholdAnnotation(OptionalTextAnnotationNameParameter thresholdAnnotation) |
void |
CustomAutoThreshold2D32FAlgorithm.setThresholdAnnotation(OptionalTextAnnotationNameParameter thresholdAnnotation) |
void |
AutoThreshold2DAlgorithm.setThresholdAnnotation(OptionalTextAnnotationNameParameter thresholdAnnotation) |
void |
CustomAutoThreshold2D32Fv2Algorithm.ThresholdParameters.setThresholdAnnotation(OptionalTextAnnotationNameParameter thresholdAnnotation) |
void |
CustomAutoThreshold2D8UAlgorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy) |
void |
ManualThreshold8U2DAlgorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy) |
void |
CustomAutoThreshold2D16Uv2Algorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy) |
void |
CustomAutoThreshold2D16UAlgorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy) |
void |
CustomAutoThreshold2D8Uv2Algorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy) |
void |
CustomAutoThreshold2D32FAlgorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy) |
void |
AutoThreshold2DAlgorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy) |
void |
ManualThreshold32F2DAlgorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy) |
void |
ManualThreshold16U2DAlgorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy) |
void |
CustomAutoThreshold2D32Fv2Algorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy) |
void |
CustomAutoThreshold2D8UAlgorithm.setThresholdCalculationExpression(JIPipeExpressionParameter thresholdCalculationExpression) |
void |
CustomAutoThreshold2D16Uv2Algorithm.ThresholdParameters.setThresholdCalculationExpression(JIPipeExpressionParameter thresholdCalculationExpression) |
void |
CustomAutoThreshold2D16UAlgorithm.setThresholdCalculationExpression(JIPipeExpressionParameter thresholdCalculationExpression) |
void |
CustomAutoThreshold2D8Uv2Algorithm.ThresholdParameters.setThresholdCalculationExpression(JIPipeExpressionParameter thresholdCalculationExpression) |
void |
CustomAutoThreshold2D32FAlgorithm.setThresholdCalculationExpression(JIPipeExpressionParameter thresholdCalculationExpression) |
void |
CustomAutoThreshold2D32Fv2Algorithm.ThresholdParameters.setThresholdCalculationExpression(JIPipeExpressionParameter thresholdCalculationExpression) |
void |
CustomAutoThreshold2D8UAlgorithm.setThresholdCombinationExpression(JIPipeExpressionParameter thresholdCombinationExpression) |
void |
CustomAutoThreshold2D16Uv2Algorithm.ThresholdParameters.setThresholdCombinationExpression(JIPipeExpressionParameter thresholdCombinationExpression) |
void |
CustomAutoThreshold2D16UAlgorithm.setThresholdCombinationExpression(JIPipeExpressionParameter thresholdCombinationExpression) |
void |
CustomAutoThreshold2D8Uv2Algorithm.ThresholdParameters.setThresholdCombinationExpression(JIPipeExpressionParameter thresholdCombinationExpression) |
void |
CustomAutoThreshold2D32FAlgorithm.setThresholdCombinationExpression(JIPipeExpressionParameter thresholdCombinationExpression) |
void |
AutoThreshold2DAlgorithm.setThresholdCombinationExpression(JIPipeExpressionParameter thresholdCombinationExpression) |
void |
CustomAutoThreshold2D32Fv2Algorithm.ThresholdParameters.setThresholdCombinationExpression(JIPipeExpressionParameter thresholdCombinationExpression) |
void |
CustomAutoThreshold2D8UAlgorithm.setThresholdMode(AutoThreshold2DAlgorithm.SliceThresholdMode thresholdMode) |
void |
CustomAutoThreshold2D16Uv2Algorithm.setThresholdMode(AutoThreshold2DAlgorithm.SliceThresholdMode thresholdMode) |
void |
CustomAutoThreshold2D16UAlgorithm.setThresholdMode(AutoThreshold2DAlgorithm.SliceThresholdMode thresholdMode) |
void |
CustomAutoThreshold2D8Uv2Algorithm.setThresholdMode(AutoThreshold2DAlgorithm.SliceThresholdMode thresholdMode) |
void |
CustomAutoThreshold2D32FAlgorithm.setThresholdMode(AutoThreshold2DAlgorithm.SliceThresholdMode thresholdMode) |
void |
AutoThreshold2DAlgorithm.setThresholdMode(AutoThreshold2DAlgorithm.SliceThresholdMode thresholdMode) |
void |
CustomAutoThreshold2D32Fv2Algorithm.setThresholdMode(AutoThreshold2DAlgorithm.SliceThresholdMode thresholdMode) |
Modifier and Type | Method and Description |
---|---|
IterativeThresholdByROIStatistics2DAlgorithm.FilteringParameters |
IterativeThresholdByROIStatistics2DAlgorithm.getFilteringParameters() |
ImageStatisticsSetParameter |
IterativeThresholdByROIStatistics2DAlgorithm.getMeasurements() |
JIPipeExpressionParameter |
IterativeThresholdByROIStatistics2DAlgorithm.FilteringParameters.getRoiFilterExpression() |
JIPipeExpressionParameter |
IterativeThresholdByROIStatistics2DAlgorithm.ScoreParameters.getScoreAccumulationExpression() |
OptionalJIPipeExpressionParameter |
IterativeThresholdByROIStatistics2DAlgorithm.ScoreParameters.getScoreExpression() |
IterativeThresholdByROIStatistics2DAlgorithm.ScoreParameters |
IterativeThresholdByROIStatistics2DAlgorithm.getScoreParameters() |
OptionalTextAnnotationNameParameter |
IterativeThresholdByROIStatistics2DAlgorithm.getThresholdAnnotation() |
JIPipeTextAnnotationMergeMode |
IterativeThresholdByROIStatistics2DAlgorithm.getThresholdAnnotationStrategy() |
JIPipeExpressionParameter |
IterativeThresholdByROIStatistics2DAlgorithm.getThresholdCombinationExpression() |
JIPipeExpressionParameter |
IterativeThresholdByROIStatistics2DAlgorithm.FilteringParameters.getThresholdCriteriaExpression() |
IntegerRange |
IterativeThresholdByROIStatistics2DAlgorithm.getThresholds() |
boolean |
IterativeThresholdByROIStatistics2DAlgorithm.isExcludeEdgeROIs() |
boolean |
IterativeThresholdByROIStatistics2DAlgorithm.isMeasureInPhysicalUnits() |
void |
IterativeThresholdByROIStatistics2DAlgorithm.setExcludeEdgeROIs(boolean excludeEdgeROIs) |
void |
IterativeThresholdByROIStatistics2DAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits) |
void |
IterativeThresholdByROIStatistics2DAlgorithm.setMeasurements(ImageStatisticsSetParameter measurements) |
void |
IterativeThresholdByROIStatistics2DAlgorithm.FilteringParameters.setRoiFilterExpression(JIPipeExpressionParameter roiFilterExpression) |
void |
IterativeThresholdByROIStatistics2DAlgorithm.ScoreParameters.setScoreAccumulationExpression(JIPipeExpressionParameter scoreAccumulationExpression) |
void |
IterativeThresholdByROIStatistics2DAlgorithm.ScoreParameters.setScoreExpression(OptionalJIPipeExpressionParameter scoreExpression) |
void |
IterativeThresholdByROIStatistics2DAlgorithm.setThresholdAnnotation(OptionalTextAnnotationNameParameter thresholdAnnotation) |
void |
IterativeThresholdByROIStatistics2DAlgorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy) |
void |
IterativeThresholdByROIStatistics2DAlgorithm.setThresholdCombinationExpression(JIPipeExpressionParameter thresholdCombinationExpression) |
void |
IterativeThresholdByROIStatistics2DAlgorithm.FilteringParameters.setThresholdCriteriaExpression(JIPipeExpressionParameter thresholdCriteriaExpression) |
void |
IterativeThresholdByROIStatistics2DAlgorithm.setThresholds(IntegerRange thresholds) |
Modifier and Type | Method and Description |
---|---|
int |
BernsenLocalAutoThreshold2DAlgorithm.getContrastThreshold() |
double |
NiblackLocalAutoThreshold2DAlgorithm.getK() |
double |
PhansalkarLocalAutoThreshold2DAlgorithm.getK() |
double |
SauvolaLocalAutoThreshold2DAlgorithm.getK() |
LocalAutoThreshold2DAlgorithm.Method |
LocalAutoThreshold2DAlgorithm.getMethod() |
int |
LocalAutoThreshold2DAlgorithm.getModifier() |
int |
NiblackLocalAutoThreshold2DAlgorithm.getModifier() |
double |
PhansalkarLocalAutoThreshold2DAlgorithm.getP() |
double |
PhansalkarLocalAutoThreshold2DAlgorithm.getQ() |
double |
PhansalkarLocalAutoThreshold2DAlgorithm.getR() |
double |
SauvolaLocalAutoThreshold2DAlgorithm.getR() |
int |
LocalAutoThreshold2DAlgorithm.getRadius() |
int |
NiblackLocalAutoThreshold2DAlgorithm.getRadius() |
int |
ContrastLocalAutoThreshold2DAlgorithm.getRadius() |
int |
BernsenLocalAutoThreshold2DAlgorithm.getRadius() |
int |
PhansalkarLocalAutoThreshold2DAlgorithm.getRadius() |
int |
SauvolaLocalAutoThreshold2DAlgorithm.getRadius() |
boolean |
LocalAutoThreshold2DAlgorithm.isDarkBackground() |
boolean |
NiblackLocalAutoThreshold2DAlgorithm.isDarkBackground() |
boolean |
ContrastLocalAutoThreshold2DAlgorithm.isDarkBackground() |
boolean |
BernsenLocalAutoThreshold2DAlgorithm.isDarkBackground() |
boolean |
PhansalkarLocalAutoThreshold2DAlgorithm.isDarkBackground() |
boolean |
SauvolaLocalAutoThreshold2DAlgorithm.isDarkBackground() |
void |
BernsenLocalAutoThreshold2DAlgorithm.setContrastThreshold(int contrastThreshold) |
void |
LocalAutoThreshold2DAlgorithm.setDarkBackground(boolean darkBackground) |
void |
NiblackLocalAutoThreshold2DAlgorithm.setDarkBackground(boolean darkBackground) |
void |
ContrastLocalAutoThreshold2DAlgorithm.setDarkBackground(boolean darkBackground) |
void |
BernsenLocalAutoThreshold2DAlgorithm.setDarkBackground(boolean darkBackground) |
void |
PhansalkarLocalAutoThreshold2DAlgorithm.setDarkBackground(boolean darkBackground) |
void |
SauvolaLocalAutoThreshold2DAlgorithm.setDarkBackground(boolean darkBackground) |
void |
NiblackLocalAutoThreshold2DAlgorithm.setK(double k) |
void |
PhansalkarLocalAutoThreshold2DAlgorithm.setK(double k) |
void |
SauvolaLocalAutoThreshold2DAlgorithm.setK(double k) |
void |
LocalAutoThreshold2DAlgorithm.setMethod(LocalAutoThreshold2DAlgorithm.Method method) |
void |
LocalAutoThreshold2DAlgorithm.setModifier(int modifier) |
void |
NiblackLocalAutoThreshold2DAlgorithm.setModifier(int modifier) |
void |
PhansalkarLocalAutoThreshold2DAlgorithm.setP(double p) |
void |
PhansalkarLocalAutoThreshold2DAlgorithm.setQ(double q) |
void |
PhansalkarLocalAutoThreshold2DAlgorithm.setR(double r) |
void |
SauvolaLocalAutoThreshold2DAlgorithm.setR(double r) |
boolean |
LocalAutoThreshold2DAlgorithm.setRadius(int radius) |
boolean |
NiblackLocalAutoThreshold2DAlgorithm.setRadius(int radius) |
boolean |
ContrastLocalAutoThreshold2DAlgorithm.setRadius(int radius) |
boolean |
BernsenLocalAutoThreshold2DAlgorithm.setRadius(int radius) |
boolean |
PhansalkarLocalAutoThreshold2DAlgorithm.setRadius(int radius) |
boolean |
SauvolaLocalAutoThreshold2DAlgorithm.setRadius(int radius) |
Modifier and Type | Method and Description |
---|---|
Anchor |
TransformRotateFree2DAlgorithm.getAnchor() |
Anchor |
CanvasEqualizer.getAnchor() |
Anchor |
TransformScale2DAlgorithm.getAnchor() |
Anchor |
TransformEqualCanvasSize2DAlgorithm.getAnchor() |
Anchor |
TransformExpandCanvas2DAlgorithm.getAnchor() |
double |
TransformRotateFree2DAlgorithm.getAngle() |
JIPipeTextAnnotationMergeMode |
TileImage2DAlgorithm.getAnnotationMergeStrategy()
Deprecated.
|
JIPipeTextAnnotationMergeMode |
TileImage2Dv2Algorithm.getAnnotationMergeStrategy() |
Color |
TransformScale2DAlgorithm.getBackground() |
Color |
TransformRotateFree2DAlgorithm.getBackgroundColor() |
Color |
CanvasEqualizer.getBackgroundColor() |
Color |
TransformEqualCanvasSize2DAlgorithm.getBackgroundColor() |
Color |
TransformExpandCanvas2DAlgorithm.getBackgroundColor() |
JIPipeExpressionParameter |
AddBorder2DAlgorithm.getBorderColor() |
BorderMode |
TileImage2DAlgorithm.getBorderMode()
Deprecated.
|
BorderMode |
AddBorder2DAlgorithm.getBorderMode() |
BorderMode |
TileImage2Dv2Algorithm.getBorderMode() |
JIPipeExpressionParameter |
TransformSetHyperstackDimensionsAlgorithm.getcAxis() |
TransformFlip2DAlgorithm.FlipMode |
TransformFlip2DAlgorithm.getFlipMode() |
OptionalTextAnnotationNameParameter |
TileImage2DAlgorithm.getImageHeightAnnotation()
Deprecated.
|
OptionalTextAnnotationNameParameter |
TileImage2Dv2Algorithm.getImageHeightAnnotation() |
OptionalTextAnnotationNameParameter |
UnTileImage2DAlgorithm.getImageHeightAnnotation() |
OptionalTextAnnotationNameParameter |
TileImage2DAlgorithm.getImageWidthAnnotation()
Deprecated.
|
OptionalTextAnnotationNameParameter |
TileImage2Dv2Algorithm.getImageWidthAnnotation() |
OptionalTextAnnotationNameParameter |
UnTileImage2DAlgorithm.getImageWidthAnnotation() |
InterpolationMethod |
TransformScale2DAlgorithm.getInterpolationMethod() |
InterpolationMethod |
TransformScale3DAlgorithm.getInterpolationMethod() |
JIPipeExpressionParameter |
AddBorder2DAlgorithm.getMarginBottom() |
JIPipeExpressionParameter |
AddBorder2DAlgorithm.getMarginLeft() |
JIPipeExpressionParameter |
AddBorder2DAlgorithm.getMarginRight() |
JIPipeExpressionParameter |
AddBorder2DAlgorithm.getMarginTop() |
double |
Warp2DAlgorithm.getMultiplier() |
OptionalTextAnnotationNameParameter |
TileImage2DAlgorithm.getNumTilesX()
Deprecated.
|
OptionalTextAnnotationNameParameter |
TileImage2Dv2Algorithm.getNumTilesX() |
OptionalTextAnnotationNameParameter |
TileImage2DAlgorithm.getNumTilesY()
Deprecated.
|
OptionalTextAnnotationNameParameter |
TileImage2Dv2Algorithm.getNumTilesY() |
int |
TileImage2DAlgorithm.getOverlapX()
Deprecated.
|
JIPipeExpressionParameter |
TileImage2Dv2Algorithm.getOverlapX() |
int |
TileImage2DAlgorithm.getOverlapY()
Deprecated.
|
JIPipeExpressionParameter |
TileImage2Dv2Algorithm.getOverlapY() |
Margin |
TransformCrop2DAlgorithm.getRoi() |
TransformRotate2DAlgorithm.RotationMode |
TransformRotate2DAlgorithm.getRotationDirection() |
int |
TransformRotate2DAlgorithm.getRotations() |
TransformScale2DAlgorithm |
TransformEqualizeDimensionsAlgorithm.getScale2DAlgorithm() |
ScaleMode |
TransformScale2DAlgorithm.getScaleMode() |
ImageROITargetArea |
MergeImagesAlgorithm.getTargetArea() |
JIPipeExpressionParameter |
TransformSetHyperstackDimensionsAlgorithm.gettAxis() |
OptionalTextAnnotationNameParameter |
TileImage2DAlgorithm.getTileInsetXAnnotation()
Deprecated.
|
OptionalTextAnnotationNameParameter |
TileImage2Dv2Algorithm.getTileInsetXAnnotation() |
OptionalTextAnnotationNameParameter |
UnTileImage2DAlgorithm.getTileInsetXAnnotation() |
OptionalTextAnnotationNameParameter |
TileImage2DAlgorithm.getTileInsetYAnnotation()
Deprecated.
|
OptionalTextAnnotationNameParameter |
TileImage2Dv2Algorithm.getTileInsetYAnnotation() |
OptionalTextAnnotationNameParameter |
UnTileImage2DAlgorithm.getTileInsetYAnnotation() |
OptionalTextAnnotationNameParameter |
TileImage2DAlgorithm.getTileRealXAnnotation()
Deprecated.
|
OptionalTextAnnotationNameParameter |
TileImage2Dv2Algorithm.getTileRealXAnnotation() |
OptionalTextAnnotationNameParameter |
UnTileImage2DAlgorithm.getTileRealXAnnotation() |
OptionalTextAnnotationNameParameter |
TileImage2DAlgorithm.getTileRealYAnnotation()
Deprecated.
|
OptionalTextAnnotationNameParameter |
TileImage2Dv2Algorithm.getTileRealYAnnotation() |
OptionalTextAnnotationNameParameter |
UnTileImage2DAlgorithm.getTileRealYAnnotation() |
int |
TileImage2DAlgorithm.getTileSizeX()
Deprecated.
|
JIPipeExpressionParameter |
TileImage2Dv2Algorithm.getTileSizeX() |
int |
TileImage2DAlgorithm.getTileSizeY()
Deprecated.
|
JIPipeExpressionParameter |
TileImage2Dv2Algorithm.getTileSizeY() |
OptionalTextAnnotationNameParameter |
TileImage2DAlgorithm.getTileXAnnotation()
Deprecated.
|
OptionalTextAnnotationNameParameter |
TileImage2Dv2Algorithm.getTileXAnnotation() |
OptionalTextAnnotationNameParameter |
TileImage2DAlgorithm.getTileYAnnotation()
Deprecated.
|
OptionalTextAnnotationNameParameter |
TileImage2Dv2Algorithm.getTileYAnnotation() |
HyperstackDimension |
Warp2DAlgorithm.getVectorDimension() |
WrapMode |
Warp2DAlgorithm.getWrapMode() |
JIPipeExpressionParameter |
CanvasEqualizer.getxAxis() |
OptionalJIPipeExpressionParameter |
TransformScale2DAlgorithm.getxAxis() |
NumericFunctionExpression |
TransformEqualCanvasSize2DAlgorithm.getxAxis() |
OptionalJIPipeExpressionParameter |
TransformScale3DAlgorithm.getxAxis() |
NumericFunctionExpression |
TransformExpandCanvas2DAlgorithm.getxAxis() |
JIPipeExpressionParameter |
CanvasEqualizer.getyAxis() |
OptionalJIPipeExpressionParameter |
TransformScale2DAlgorithm.getyAxis() |
NumericFunctionExpression |
TransformEqualCanvasSize2DAlgorithm.getyAxis() |
OptionalJIPipeExpressionParameter |
TransformScale3DAlgorithm.getyAxis() |
NumericFunctionExpression |
TransformExpandCanvas2DAlgorithm.getyAxis() |
JIPipeExpressionParameter |
TransformSetHyperstackDimensionsAlgorithm.getzAxis() |
OptionalJIPipeExpressionParameter |
TransformScale3DAlgorithm.getzAxis() |
boolean |
Warp2DAlgorithm.isAbsoluteCoordinates() |
boolean |
TransformScale2DAlgorithm.isAvoidUnnecessaryScaling() |
boolean |
TransformEqualizeDimensionsAlgorithm.isCopySlices() |
boolean |
TransformSetHyperstackDimensionsAlgorithm.isCopySlices() |
boolean |
TransformEqualizeDimensionsAlgorithm.isEqualHyperstackDimensions() |
boolean |
TransformEqualizeDimensionsAlgorithm.isEqualWidthAndHeight() |
boolean |
TransformRotateFree2DAlgorithm.isExpandCanvas() |
boolean |
Warp2DAlgorithm.isInvertTransform() |
boolean |
TransformRotateFree2DAlgorithm.isOutputRoi() |
boolean |
Warp2DAlgorithm.isPolarCoordinates() |
void |
Warp2DAlgorithm.setAbsoluteCoordinates(boolean absoluteCoordinates) |
void |
TransformRotateFree2DAlgorithm.setAnchor(Anchor anchor) |
void |
CanvasEqualizer.setAnchor(Anchor anchor) |
void |
TransformScale2DAlgorithm.setAnchor(Anchor anchor) |
void |
TransformEqualCanvasSize2DAlgorithm.setAnchor(Anchor anchor) |
void |
TransformExpandCanvas2DAlgorithm.setAnchor(Anchor anchor) |
void |
TransformRotateFree2DAlgorithm.setAngle(double angle) |
void |
TileImage2DAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
Deprecated.
|
void |
TileImage2Dv2Algorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy) |
void |
TransformScale2DAlgorithm.setAvoidUnnecessaryScaling(boolean avoidUnnecessaryScaling) |
void |
TransformScale2DAlgorithm.setBackground(Color background) |
void |
TransformRotateFree2DAlgorithm.setBackgroundColor(Color backgroundColor) |
void |
CanvasEqualizer.setBackgroundColor(Color backgroundColor) |
void |
TransformEqualCanvasSize2DAlgorithm.setBackgroundColor(Color backgroundColor) |
void |
TransformExpandCanvas2DAlgorithm.setBackgroundColor(Color backgroundColor) |
void |
AddBorder2DAlgorithm.setBorderColor(JIPipeExpressionParameter borderColor) |
void |
TileImage2DAlgorithm.setBorderMode(BorderMode borderMode)
Deprecated.
|
void |
AddBorder2DAlgorithm.setBorderMode(BorderMode borderMode) |
void |
TileImage2Dv2Algorithm.setBorderMode(BorderMode borderMode) |
void |
TransformSetHyperstackDimensionsAlgorithm.setcAxis(JIPipeExpressionParameter cAxis) |
void |
TransformEqualizeDimensionsAlgorithm.setCopySlices(boolean copySlices) |
void |
TransformSetHyperstackDimensionsAlgorithm.setCopySlices(boolean copySlices) |
void |
TransformEqualizeDimensionsAlgorithm.setEqualHyperstackDimensions(boolean equalHyperstackDimensions) |
void |
TransformEqualizeDimensionsAlgorithm.setEqualWidthAndHeight(boolean equalWidthAndHeight) |
void |
TransformRotateFree2DAlgorithm.setExpandCanvas(boolean expandCanvas) |
void |
TransformFlip2DAlgorithm.setFlipMode(TransformFlip2DAlgorithm.FlipMode flipMode) |
void |
TileImage2DAlgorithm.setImageHeightAnnotation(OptionalTextAnnotationNameParameter imageHeightAnnotation)
Deprecated.
|
void |
TileImage2Dv2Algorithm.setImageHeightAnnotation(OptionalTextAnnotationNameParameter imageHeightAnnotation) |
void |
UnTileImage2DAlgorithm.setImageHeightAnnotation(OptionalTextAnnotationNameParameter imageHeightAnnotation) |
void |
TileImage2DAlgorithm.setImageWidthAnnotation(OptionalTextAnnotationNameParameter imageWidthAnnotation)
Deprecated.
|
void |
TileImage2Dv2Algorithm.setImageWidthAnnotation(OptionalTextAnnotationNameParameter imageWidthAnnotation) |
void |
UnTileImage2DAlgorithm.setImageWidthAnnotation(OptionalTextAnnotationNameParameter imageWidthAnnotation) |
void |
TransformScale2DAlgorithm.setInterpolationMethod(InterpolationMethod interpolationMethod) |
void |
TransformScale3DAlgorithm.setInterpolationMethod(InterpolationMethod interpolationMethod) |
void |
Warp2DAlgorithm.setInvertTransform(boolean invertTransform) |
void |
AddBorder2DAlgorithm.setMarginBottom(JIPipeExpressionParameter marginBottom) |
void |
AddBorder2DAlgorithm.setMarginLeft(JIPipeExpressionParameter marginLeft) |
void |
AddBorder2DAlgorithm.setMarginRight(JIPipeExpressionParameter marginRight) |
void |
AddBorder2DAlgorithm.setMarginTop(JIPipeExpressionParameter marginTop) |
void |
Warp2DAlgorithm.setMultiplier(double multiplier) |
void |
TileImage2DAlgorithm.setNumTilesX(OptionalTextAnnotationNameParameter numTilesX)
Deprecated.
|
void |
TileImage2Dv2Algorithm.setNumTilesX(OptionalTextAnnotationNameParameter numTilesX) |
void |
TileImage2DAlgorithm.setNumTilesY(OptionalTextAnnotationNameParameter numTilesY)
Deprecated.
|
void |
TileImage2Dv2Algorithm.setNumTilesY(OptionalTextAnnotationNameParameter numTilesY) |
void |
TransformRotateFree2DAlgorithm.setOutputRoi(boolean outputRoi) |
boolean |
TileImage2DAlgorithm.setOverlapX(int overlapX)
Deprecated.
|
void |
TileImage2Dv2Algorithm.setOverlapX(JIPipeExpressionParameter overlapX) |
void |
TileImage2DAlgorithm.setOverlapY(int overlapY)
Deprecated.
|
void |
TileImage2Dv2Algorithm.setOverlapY(JIPipeExpressionParameter overlapY) |
void |
Warp2DAlgorithm.setPolarCoordinates(boolean polarCoordinates) |
void |
TransformCrop2DAlgorithm.setRoi(Margin roi) |
void |
TransformRotate2DAlgorithm.setRotationDirection(TransformRotate2DAlgorithm.RotationMode rotationDirection) |
void |
TransformRotate2DAlgorithm.setRotations(int rotations) |
void |
TransformScale2DAlgorithm.setScaleMode(ScaleMode scaleMode) |
void |
MergeImagesAlgorithm.setTargetArea(ImageROITargetArea targetArea) |
void |
TransformSetHyperstackDimensionsAlgorithm.settAxis(JIPipeExpressionParameter tAxis) |
void |
TileImage2DAlgorithm.setTileInsetXAnnotation(OptionalTextAnnotationNameParameter tileInsetXAnnotation)
Deprecated.
|
void |
TileImage2Dv2Algorithm.setTileInsetXAnnotation(OptionalTextAnnotationNameParameter tileInsetXAnnotation) |
void |
UnTileImage2DAlgorithm.setTileInsetXAnnotation(OptionalTextAnnotationNameParameter tileInsetXAnnotation) |
void |
TileImage2DAlgorithm.setTileInsetYAnnotation(OptionalTextAnnotationNameParameter tileInsetYAnnotation)
Deprecated.
|
void |
TileImage2Dv2Algorithm.setTileInsetYAnnotation(OptionalTextAnnotationNameParameter tileInsetYAnnotation) |
void |
UnTileImage2DAlgorithm.setTileInsetYAnnotation(OptionalTextAnnotationNameParameter tileInsetYAnnotation) |
void |
TileImage2DAlgorithm.setTileRealXAnnotation(OptionalTextAnnotationNameParameter tileRealXAnnotation)
Deprecated.
|
void |
TileImage2Dv2Algorithm.setTileRealXAnnotation(OptionalTextAnnotationNameParameter tileRealXAnnotation) |
void |
UnTileImage2DAlgorithm.setTileRealXAnnotation(OptionalTextAnnotationNameParameter tileRealXAnnotation) |
void |
TileImage2DAlgorithm.setTileRealYAnnotation(OptionalTextAnnotationNameParameter tileRealYAnnotation)
Deprecated.
|
void |
TileImage2Dv2Algorithm.setTileRealYAnnotation(OptionalTextAnnotationNameParameter tileRealYAnnotation) |
void |
UnTileImage2DAlgorithm.setTileRealYAnnotation(OptionalTextAnnotationNameParameter tileRealYAnnotation) |
void |
TileImage2DAlgorithm.setTileSizeX(int tileSizeX)
Deprecated.
|
void |
TileImage2Dv2Algorithm.setTileSizeX(JIPipeExpressionParameter tileSizeX) |
void |
TileImage2DAlgorithm.setTileSizeY(int tileSizeY)
Deprecated.
|
void |
TileImage2Dv2Algorithm.setTileSizeY(JIPipeExpressionParameter tileSizeY) |
void |
TileImage2DAlgorithm.setTileXAnnotation(OptionalTextAnnotationNameParameter tileXAnnotation)
Deprecated.
|
void |
TileImage2Dv2Algorithm.setTileXAnnotation(OptionalTextAnnotationNameParameter tileXAnnotation) |
void |
TileImage2DAlgorithm.setTileYAnnotation(OptionalTextAnnotationNameParameter tileYAnnotation)
Deprecated.
|
void |
TileImage2Dv2Algorithm.setTileYAnnotation(OptionalTextAnnotationNameParameter tileYAnnotation) |
void |
Warp2DAlgorithm.setVectorDimension(HyperstackDimension vectorDimension) |
void |
Warp2DAlgorithm.setWrapMode(WrapMode wrapMode) |
void |
CanvasEqualizer.setxAxis(JIPipeExpressionParameter xAxis) |
void |
TransformEqualCanvasSize2DAlgorithm.setxAxis(NumericFunctionExpression xAxis) |
void |
TransformExpandCanvas2DAlgorithm.setxAxis(NumericFunctionExpression xAxis) |
void |
TransformScale2DAlgorithm.setxAxis(OptionalJIPipeExpressionParameter xAxis) |
void |
TransformScale3DAlgorithm.setxAxis(OptionalJIPipeExpressionParameter xAxis) |
void |
CanvasEqualizer.setyAxis(JIPipeExpressionParameter yAxis) |
void |
TransformEqualCanvasSize2DAlgorithm.setyAxis(NumericFunctionExpression yAxis) |
void |
TransformExpandCanvas2DAlgorithm.setyAxis(NumericFunctionExpression yAxis) |
void |
TransformScale2DAlgorithm.setyAxis(OptionalJIPipeExpressionParameter yAxis) |
void |
TransformScale3DAlgorithm.setyAxis(OptionalJIPipeExpressionParameter yAxis) |
void |
TransformSetHyperstackDimensionsAlgorithm.setzAxis(JIPipeExpressionParameter zAxis) |
void |
TransformScale3DAlgorithm.setzAxis(OptionalJIPipeExpressionParameter zAxis) |
Modifier and Type | Method and Description |
---|---|
Color |
MontageCreator.CanvasParameters.getBorderColor() |
int |
MontageCreator.CanvasParameters.getBorderSize() |
Anchor |
MontageCreator.CanvasParameters.getCanvasAnchor() |
Color |
MontageCreator.CanvasParameters.getCanvasBackgroundColor() |
MontageCreator.CanvasParameters |
MontageCreator.getCanvasParameters() |
OptionalIntegerParameter |
MontageCreator.getForceNumColumns() |
OptionalIntegerParameter |
MontageCreator.getForceNumRows() |
MontageCreator.ImageParameters |
MontageCreator.getImageParameters() |
InterpolationMethod |
MontageCreator.ImageParameters.getInterpolationMethod() |
OptionalColorParameter |
MontageCreator.LabelParameters.getLabelBackground() |
JIPipeExpressionParameter |
MontageCreator.getLabelExpression() |
FontFamilyParameter |
MontageCreator.LabelParameters.getLabelFontFamily() |
Color |
MontageCreator.LabelParameters.getLabelForeground() |
Anchor |
MontageCreator.LabelParameters.getLabelLocation() |
MontageCreator.LabelParameters |
MontageCreator.getLabelParameters() |
int |
MontageCreator.LabelParameters.getLabelSize() |
ScaleMode |
MontageCreator.ImageParameters.getScaleMode() |
OptionalJIPipeExpressionParameter |
MontageCreator.getSortingLabelExpression() |
ImageROITargetArea |
SimpleImageAndRoiIteratingAlgorithm.getTargetArea() |
JIPipeExpressionParameter |
MontageCreator.getTileHeight() |
JIPipeExpressionParameter |
MontageCreator.getTileWidth() |
boolean |
MontageCreator.LabelParameters.isAvoidLabelOnImage() |
boolean |
MontageCreator.ImageParameters.isAvoidScaling() |
boolean |
MontageCreator.LabelParameters.isDrawLabel() |
boolean |
MontageCreator.isForceRGB() |
boolean |
MontageCreator.LabelParameters.isLimitWithEllipsis() |
boolean |
MontageCreator.isRgbUseRender() |
void |
MontageCreator.LabelParameters.setAvoidLabelOnImage(boolean avoidLabelOnImage) |
void |
MontageCreator.ImageParameters.setAvoidScaling(boolean avoidScaling) |
void |
MontageCreator.CanvasParameters.setBorderColor(Color borderColor) |
void |
MontageCreator.CanvasParameters.setBorderSize(int borderSize) |
void |
MontageCreator.CanvasParameters.setCanvasAnchor(Anchor canvasAnchor) |
void |
MontageCreator.CanvasParameters.setCanvasBackgroundColor(Color canvasBackgroundColor) |
void |
MontageCreator.LabelParameters.setDrawLabel(boolean drawLabel) |
void |
MontageCreator.setForceNumColumns(OptionalIntegerParameter forceNumColumns) |
void |
MontageCreator.setForceNumRows(OptionalIntegerParameter forceNumRows) |
void |
MontageCreator.setForceRGB(boolean forceRGB) |
void |
MontageCreator.ImageParameters.setInterpolationMethod(InterpolationMethod interpolationMethod) |
void |
MontageCreator.LabelParameters.setLabelBackground(OptionalColorParameter labelBackground) |
void |
MontageCreator.setLabelExpression(JIPipeExpressionParameter labelExpression) |
void |
MontageCreator.LabelParameters.setLabelFontFamily(FontFamilyParameter labelFontFamily) |
void |
MontageCreator.LabelParameters.setLabelForeground(Color labelForeground) |
void |
MontageCreator.LabelParameters.setLabelLocation(Anchor labelLocation) |
void |
MontageCreator.LabelParameters.setLabelSize(int labelSize) |
void |
MontageCreator.LabelParameters.setLimitWithEllipsis(boolean limitWithEllipsis) |
void |
MontageCreator.setRgbUseRender(boolean rgbUseRender) |
void |
MontageCreator.ImageParameters.setScaleMode(ScaleMode scaleMode) |
void |
MontageCreator.setSortingLabelExpression(OptionalJIPipeExpressionParameter sortingLabelExpression) |
void |
SimpleImageAndRoiIteratingAlgorithm.setTargetArea(ImageROITargetArea targetArea) |
void |
MontageCreator.setTileHeight(JIPipeExpressionParameter tileHeight) |
void |
MontageCreator.setTileWidth(JIPipeExpressionParameter tileWidth) |
Modifier and Type | Method and Description |
---|---|
OMETIFFCompression |
ImageJDataTypesSettings.getBioFormatsCompression() |
boolean |
ImageJDataTypesSettings.isSaveRGBWithImageJ() |
boolean |
ImageJDataTypesSettings.isUseBioFormats() |
void |
ImageJDataTypesSettings.setBioFormatsCompression(OMETIFFCompression bioFormatsCompression) |
void |
ImageJDataTypesSettings.setSaveRGBWithImageJ(boolean saveRGBWithImageJ) |
void |
ImageJDataTypesSettings.setUseBioFormats(boolean useBioFormats) |
Modifier and Type | Method and Description |
---|---|
OptionalTextAnnotationNameParameter |
ImagePropertiesToAnnotationAlgorithm.getBitDepthAnnotation() |
ImageJCalibrationMode |
DisplayRangeCalibrationAlgorithm.getCalibrationMode() |
OptionalTextAnnotationNameParameter |
ImagePropertiesToAnnotationAlgorithm.getChannelSizeAnnotation() |
OptionalTextAnnotationNameParameter |
ImagePropertiesToAnnotationAlgorithm.getColorSpaceAnnotation() |
double |
DisplayRangeCalibrationAlgorithm.getCustomMax() |
double |
DisplayRangeCalibrationAlgorithm.getCustomMin() |
JIPipeDataByMetadataExporter |
BioFormatsExporter.getExporter()
Deprecated.
|
OMEExporterSettings |
SetBioFormatsExporterSettings.getExporterSettings() |
OMEExporterSettings |
BioFormatsExporter2.getExporterSettings() |
OMEExporterSettings |
BioFormatsExporter.getExporterSettings()
Deprecated.
|
DataExportExpressionParameter |
BioFormatsExporter2.getFilePath() |
OptionalTextAnnotationNameParameter |
ImagePropertiesToAnnotationAlgorithm.getFramesSizeAnnotation() |
OptionalTextAnnotationNameParameter |
ImagePropertiesToAnnotationAlgorithm.getHeightAnnotation() |
OptionalTextAnnotationNameParameter |
ImagePropertiesToAnnotationAlgorithm.getImageTypeAnnotation() |
Path |
BioFormatsExporter.getOutputDirectory()
Deprecated.
|
JIPipeDataInfoRef |
ImageTypeConverter.getOutputType() |
OptionalTextAnnotationNameParameter |
ImagePropertiesToAnnotationAlgorithm.getPhysicalDimensionTAnnotation() |
OptionalTextAnnotationNameParameter |
ImagePropertiesToAnnotationAlgorithm.getPhysicalDimensionValueAnnotation() |
OptionalTextAnnotationNameParameter |
ImagePropertiesToAnnotationAlgorithm.getPhysicalDimensionXAnnotation() |
OptionalTextAnnotationNameParameter |
ImagePropertiesToAnnotationAlgorithm.getPhysicalDimensionYAnnotation() |
OptionalTextAnnotationNameParameter |
ImagePropertiesToAnnotationAlgorithm.getPhysicalDimensionZAnnotation() |
OptionalTextAnnotationNameParameter |
ImagePropertiesToAnnotationAlgorithm.getPlaneNumberAnnotation() |
OptionalTextAnnotationNameParameter |
ImagePropertiesToAnnotationAlgorithm.getStackSizeAnnotation() |
OptionalTextAnnotationNameParameter |
ImagePropertiesToAnnotationAlgorithm.getTitleAnnotation() |
OptionalTextAnnotationNameParameter |
ImagePropertiesToAnnotationAlgorithm.getWidthAnnotation() |
void |
ImagePropertiesToAnnotationAlgorithm.setBitDepthAnnotation(OptionalTextAnnotationNameParameter bitDepthAnnotation) |
void |
DisplayRangeCalibrationAlgorithm.setCalibrationMode(ImageJCalibrationMode calibrationMode) |
void |
ImagePropertiesToAnnotationAlgorithm.setChannelSizeAnnotation(OptionalTextAnnotationNameParameter channelSizeAnnotation) |
void |
ImagePropertiesToAnnotationAlgorithm.setColorSpaceAnnotation(OptionalTextAnnotationNameParameter colorSpaceAnnotation) |
void |
DisplayRangeCalibrationAlgorithm.setCustomMax(double customMax) |
void |
DisplayRangeCalibrationAlgorithm.setCustomMin(double customMin) |
void |
BioFormatsExporter2.setFilePath(DataExportExpressionParameter filePath) |
void |
ImagePropertiesToAnnotationAlgorithm.setFramesSizeAnnotation(OptionalTextAnnotationNameParameter framesSizeAnnotation) |
void |
ImagePropertiesToAnnotationAlgorithm.setHeightAnnotation(OptionalTextAnnotationNameParameter heightAnnotation) |
void |
ImagePropertiesToAnnotationAlgorithm.setImageTypeAnnotation(OptionalTextAnnotationNameParameter imageTypeAnnotation) |
void |
BioFormatsExporter.setOutputDirectory(Path outputDirectory)
Deprecated.
|
void |
ImageTypeConverter.setOutputType(JIPipeDataInfoRef outputType) |
void |
ImagePropertiesToAnnotationAlgorithm.setPhysicalDimensionTAnnotation(OptionalTextAnnotationNameParameter physicalDimensionTAnnotation) |
void |
ImagePropertiesToAnnotationAlgorithm.setPhysicalDimensionValueAnnotation(OptionalTextAnnotationNameParameter physicalDimensionValueAnnotation) |
void |
ImagePropertiesToAnnotationAlgorithm.setPhysicalDimensionXAnnotation(OptionalTextAnnotationNameParameter physicalDimensionXAnnotation) |
void |
ImagePropertiesToAnnotationAlgorithm.setPhysicalDimensionYAnnotation(OptionalTextAnnotationNameParameter physicalDimensionYAnnotation) |
void |
ImagePropertiesToAnnotationAlgorithm.setPhysicalDimensionZAnnotation(OptionalTextAnnotationNameParameter physicalDimensionZAnnotation) |
void |
ImagePropertiesToAnnotationAlgorithm.setPlaneNumberAnnotation(OptionalTextAnnotationNameParameter planeNumberAnnotation) |
void |
ImagePropertiesToAnnotationAlgorithm.setStackSizeAnnotation(OptionalTextAnnotationNameParameter stackSizeAnnotation) |
void |
ImagePropertiesToAnnotationAlgorithm.setTitleAnnotation(OptionalTextAnnotationNameParameter titleAnnotation) |
void |
ImagePropertiesToAnnotationAlgorithm.setWidthAnnotation(OptionalTextAnnotationNameParameter widthAnnotation) |
Modifier and Type | Method and Description |
---|---|
boolean |
ColorSpaceConverterAlgorithm.isReinterpret() |
void |
ColorSpaceConverterAlgorithm.setReinterpret(boolean reinterpret) |
Modifier and Type | Method and Description |
---|---|
OMEColorMode |
BioFormatsImporter.getColorMode() |
RectangleList |
BioFormatsImporter.getCropRegions() |
ResultsTableFromFile.FileFormat |
ResultsTableFromFile.getFileFormat() |
JIPipeDataInfoRef |
ImagePlusFromFile.getGeneratedImageType() |
OptionalTextAnnotationNameParameter |
BioFormatsImporter.getSeriesAnnotation() |
IntegerList |
BioFormatsImporter.getSeriesToImport() |
OptionalTextAnnotationNameParameter |
ResultsTableFromFile.getSheetNameAnnotation() |
StringList |
ResultsTableFromFile.getSheets() |
ome.xml.model.enums.DimensionOrder |
BioFormatsImporter.getStackOrder() |
OptionalTextAnnotationNameParameter |
BioFormatsImporter.getTitleAnnotation() |
OptionalTextAnnotationNameParameter |
ImagePlusFromFile.getTitleAnnotation() |
boolean |
BioFormatsImporter.isAutoScale() |
boolean |
BioFormatsImporter.isConcatenate() |
boolean |
BioFormatsImporter.isCrop() |
boolean |
BioFormatsImporter.isExtractRois() |
boolean |
ImagePlusFromFile.isForceNativeImport() |
boolean |
ResultsTableFromFile.isIgnoreMissingSheets() |
boolean |
BioFormatsImporter.isOpenAllSeries() |
boolean |
ImagePlusFromFile.isRemoveLut() |
boolean |
ImagePlusFromFile.isRemoveOverlay() |
boolean |
BioFormatsImporter.isSplitChannels() |
boolean |
BioFormatsImporter.isSplitFocalPlanes() |
boolean |
BioFormatsImporter.isSplitTimePoints() |
boolean |
BioFormatsImporter.isStitchTiles() |
boolean |
BioFormatsImporter.isSwapDimensions() |
void |
BioFormatsImporter.setAutoScale(boolean autoScale) |
void |
BioFormatsImporter.setColorMode(OMEColorMode colorMode) |
void |
BioFormatsImporter.setConcatenate(boolean concatenate) |
void |
BioFormatsImporter.setCrop(boolean crop) |
void |
BioFormatsImporter.setCropRegions(RectangleList cropRegions) |
void |
BioFormatsImporter.setExtractRois(boolean extractRois) |
void |
ResultsTableFromFile.setFileFormat(ResultsTableFromFile.FileFormat fileFormat) |
void |
ImagePlusFromFile.setForceNativeImport(boolean forceNativeImport) |
void |
ImagePlusFromFile.setGeneratedImageType(JIPipeDataInfoRef generatedImageType) |
void |
ResultsTableFromFile.setIgnoreMissingSheets(boolean ignoreMissingSheets) |
void |
BioFormatsImporter.setOpenAllSeries(boolean openAllSeries) |
void |
ImagePlusFromFile.setRemoveLut(boolean removeLut) |
void |
ImagePlusFromFile.setRemoveOverlay(boolean removeOverlay) |
void |
BioFormatsImporter.setSeriesAnnotation(OptionalTextAnnotationNameParameter seriesAnnotation) |
void |
BioFormatsImporter.setSeriesToImport(IntegerList seriesToImport) |
void |
ResultsTableFromFile.setSheetNameAnnotation(OptionalTextAnnotationNameParameter sheetNameAnnotation) |
void |
ResultsTableFromFile.setSheets(StringList sheets) |
void |
BioFormatsImporter.setSplitChannels(boolean splitChannels) |
void |
BioFormatsImporter.setSplitFocalPlanes(boolean splitFocalPlanes) |
void |
BioFormatsImporter.setSplitTimePoints(boolean splitTimePoints) |
void |
BioFormatsImporter.setStackOrder(ome.xml.model.enums.DimensionOrder stackOrder) |
void |
BioFormatsImporter.setStitchTiles(boolean stitchTiles) |
void |
BioFormatsImporter.setSwapDimensions(boolean swapDimensions) |
void |
BioFormatsImporter.setTitleAnnotation(OptionalTextAnnotationNameParameter titleAnnotation) |
void |
ImagePlusFromFile.setTitleAnnotation(OptionalTextAnnotationNameParameter titleAnnotation) |
Modifier and Type | Method and Description |
---|---|
OMETIFFCompression |
OMEExporterSettings.getCompression() |
ome.xml.model.enums.DimensionOrder |
OMEExporterSettings.getDimensionOrder() |
boolean |
OMEExporterSettings.isNoLUT() |
boolean |
OMEExporterSettings.isPadded() |
boolean |
OMEExporterSettings.isSaveROI() |
boolean |
OMEExporterSettings.isSplitC() |
boolean |
OMEExporterSettings.isSplitT() |
boolean |
OMEExporterSettings.isSplitZ() |
void |
OMEExporterSettings.setCompression(OMETIFFCompression compression) |
void |
OMEExporterSettings.setDimensionOrder(ome.xml.model.enums.DimensionOrder dimensionOrder) |
void |
OMEExporterSettings.setNoLUT(boolean noLUT) |
void |
OMEExporterSettings.setPadded(boolean padded) |
void |
OMEExporterSettings.setSaveROI(boolean saveROI) |
void |
OMEExporterSettings.setSplitC(boolean splitC) |
void |
OMEExporterSettings.setSplitT(boolean splitT) |
void |
OMEExporterSettings.setSplitZ(boolean splitZ) |
Modifier and Type | Method and Description |
---|---|
RoiDrawer |
ImageViewerUIROI2DDisplaySettings.getRoiDrawer() |
boolean |
ImageViewerUIROI2DDisplaySettings.isRenderROIAsOverlay() |
boolean |
ImageViewerUIROI2DDisplaySettings.isShowROI() |
void |
ImageViewerUIROI2DDisplaySettings.setRenderROIAsOverlay(boolean renderROIAsOverlay) |
void |
ImageViewerUIROI2DDisplaySettings.setShowROI(boolean showROI) |
Modifier and Type | Method and Description |
---|---|
ImageBlendMode |
ImageBlendLayer.getBlendMode() |
ImageJCalibrationMode |
CalibrationParameters.getCalibrationMode() |
boolean |
ROIEditor.getCenterScale() |
double |
CalibrationParameters.getCustomMax() |
double |
CalibrationParameters.getCustomMin() |
ROIElementDrawingMode |
RoiDrawer.getDrawFilledOutlineMode() |
RoiLabel |
RoiDrawer.getDrawnLabel() |
ROIElementDrawingMode |
RoiDrawer.getDrawOutlineMode() |
Color |
ROIEditor.getFillColor() |
OptionalColorParameter |
RoiDrawer.getLabelBackground() |
FontFamilyParameter |
RoiDrawer.getLabelFontFamily() |
Color |
RoiDrawer.getLabelForeground() |
int |
RoiDrawer.getLabelSize() |
Color |
ROIEditor.getLineColor() |
double |
ROIEditor.getLineWidth() |
double |
RoiDrawer.getOpacity() |
double |
ImageBlendLayer.getOpacity() |
OptionalColorParameter |
RoiDrawer.getOverrideFillColor() |
OptionalColorParameter |
RoiDrawer.getOverrideLineColor() |
OptionalDoubleParameter |
RoiDrawer.getOverrideLineWidth() |
int |
ROIEditor.getPositionC() |
int |
ROIEditor.getPositionT() |
double |
ROIEditor.getPositionX() |
double |
ROIEditor.getPositionY() |
int |
ROIEditor.getPositionZ() |
int |
ImageBlendLayer.getPriority() |
String |
ROIEditor.getRoiName() |
double |
ROIEditor.getScaleX() |
double |
ROIEditor.getScaleY() |
boolean |
RoiDrawer.isDrawOver() |
boolean |
RoiDrawer.isIgnoreC() |
boolean |
RoiDrawer.isIgnoreT() |
boolean |
RoiDrawer.isIgnoreZ() |
void |
ImageBlendLayer.setBlendMode(ImageBlendMode blendMode) |
void |
CalibrationParameters.setCalibrationMode(ImageJCalibrationMode calibrationMode) |
void |
ROIEditor.setCenterScale(boolean centerScale) |
void |
CalibrationParameters.setCustomMax(double customMax) |
void |
CalibrationParameters.setCustomMin(double customMin) |
void |
RoiDrawer.setDrawFilledOutlineMode(ROIElementDrawingMode drawFilledOutlineMode) |
void |
RoiDrawer.setDrawnLabel(RoiLabel drawnLabel) |
void |
RoiDrawer.setDrawOutlineMode(ROIElementDrawingMode drawOutlineMode) |
void |
RoiDrawer.setDrawOver(boolean drawOver) |
void |
ROIEditor.setFillColor(Color fillColor) |
void |
RoiDrawer.setIgnoreC(boolean ignoreC) |
void |
RoiDrawer.setIgnoreT(boolean ignoreT) |
void |
RoiDrawer.setIgnoreZ(boolean ignoreZ) |
void |
RoiDrawer.setLabelBackground(OptionalColorParameter labelBackground) |
void |
RoiDrawer.setLabelFontFamily(FontFamilyParameter labelFontFamily) |
void |
RoiDrawer.setLabelForeground(Color labelForeground) |
boolean |
RoiDrawer.setLabelSize(int labelSize) |
void |
ROIEditor.setLineColor(Color lineColor) |
void |
ROIEditor.setLineWidth(double lineWidth) |
boolean |
RoiDrawer.setOpacity(double opacity) |
void |
ImageBlendLayer.setOpacity(double opacity) |
void |
RoiDrawer.setOverrideFillColor(OptionalColorParameter overrideFillColor) |
void |
RoiDrawer.setOverrideLineColor(OptionalColorParameter overrideLineColor) |
void |
RoiDrawer.setOverrideLineWidth(OptionalDoubleParameter overrideLineWidth) |
void |
ROIEditor.setPositionC(int positionC) |
void |
ROIEditor.setPositionT(int positionT) |
void |
ROIEditor.setPositionX(double positionX) |
void |
ROIEditor.setPositionY(double positionY) |
void |
ROIEditor.setPositionZ(int positionZ) |
void |
ImageBlendLayer.setPriority(int priority) |
void |
ROIEditor.setRoiName(String roiName) |
void |
ROIEditor.setScaleX(double scaleX) |
void |
ROIEditor.setScaleY(double scaleY) |
Modifier and Type | Method and Description |
---|---|
ImageStatisticsSetParameter |
MeasurementDrawerPlugin2D.Settings.getStatistics() |
boolean |
MeasurementDrawerPlugin2D.Settings.isMeasureInPhysicalUnits() |
void |
MeasurementDrawerPlugin2D.Settings.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits) |
void |
MeasurementDrawerPlugin2D.Settings.setStatistics(ImageStatisticsSetParameter statistics) |
Modifier and Type | Method and Description |
---|---|
ImageStatisticsSetParameter |
Measurement2DSettings.getStatistics() |
boolean |
Measurement2DSettings.isMeasureInPhysicalUnits() |
void |
Measurement2DSettings.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits) |
void |
Measurement2DSettings.setStatistics(ImageStatisticsSetParameter statistics) |
Modifier and Type | Method and Description |
---|---|
IntegerRange |
SlicerControlsPlugin3D.MultiOrthoSlicerSettings.getX() |
IntegerRange |
SlicerControlsPlugin3D.MultiOrthoSlicerSettings.getY() |
IntegerRange |
SlicerControlsPlugin3D.MultiOrthoSlicerSettings.getZ() |
boolean |
SlicerControlsPlugin3D.MultiOrthoSlicerSettings.isOpaqueTextures() |
void |
SlicerControlsPlugin3D.MultiOrthoSlicerSettings.setOpaqueTextures(boolean opaqueTextures) |
void |
SlicerControlsPlugin3D.MultiOrthoSlicerSettings.setX(IntegerRange x) |
void |
SlicerControlsPlugin3D.MultiOrthoSlicerSettings.setY(IntegerRange y) |
void |
SlicerControlsPlugin3D.MultiOrthoSlicerSettings.setZ(IntegerRange z) |
Modifier and Type | Method and Description |
---|---|
double |
ImageViewer2DUISettings.getDefaultAnimationFPS() |
double |
ImageViewer3DUISettings.getDefaultAnimationFPS() |
Image3DRendererSettings |
ImageViewer3DUISettings.getRendererSettings() |
double |
ImageViewer2DUISettings.getZoomBaseSpeed() |
double |
ImageViewer2DUISettings.getZoomDynamicSpeed() |
boolean |
ImageViewerGeneralUISettings.isAutoSwitch2D3DViewer() |
boolean |
ImageViewer2DUISettings.isExportAsDisplayed() |
boolean |
ImageViewer2DUISettings.isShowSideBar() |
boolean |
ImageViewer3DUISettings.isShowSideBar() |
void |
ImageViewerGeneralUISettings.setAutoSwitch2D3DViewer(boolean autoSwitch2D3DViewer) |
void |
ImageViewer2DUISettings.setDefaultAnimationFPS(double defaultAnimationFPS) |
void |
ImageViewer3DUISettings.setDefaultAnimationFPS(double defaultAnimationFPS) |
void |
ImageViewer2DUISettings.setExportAsDisplayed(boolean exportAsDisplayed) |
void |
ImageViewer2DUISettings.setShowSideBar(boolean showSideBar) |
void |
ImageViewer3DUISettings.setShowSideBar(boolean showSideBar) |
void |
ImageViewer2DUISettings.setZoomBaseSpeed(double zoomBaseSpeed) |
void |
ImageViewer2DUISettings.setZoomDynamicSpeed(double zoomDynamicSpeed) |
Modifier and Type | Method and Description |
---|---|
int |
SnapshotSettings.getHeight() |
int |
Image3DRendererSettings.getMaximumMemory() |
OptionalIntegerParameter |
Image3DRendererSettings.getOverrideResamplingFactor() |
Image3DRenderType |
Image3DRendererSettings.getRenderType() |
int |
SnapshotSettings.getWidth() |
void |
SnapshotSettings.setHeight(int height) |
void |
Image3DRendererSettings.setMaximumMemory(int maximumMemory) |
void |
Image3DRendererSettings.setOverrideResamplingFactor(OptionalIntegerParameter overrideResamplingFactor) |
void |
Image3DRendererSettings.setRenderType(Image3DRenderType renderType) |
void |
SnapshotSettings.setWidth(int width) |
Modifier and Type | Method and Description |
---|---|
Color |
ConvertImpImageToImagePlusAlgorithm.getCheckerboardColor1() |
Color |
ConvertImpImageToImagePlusAlgorithm.getCheckerboardColor2() |
int |
ConvertImpImageToImagePlusAlgorithm.getCheckerboardSize() |
ImpImageOutputFormat |
ExportImpImageAlgorithm.getFileFormat() |
DataExportExpressionParameter |
ExportImpImageAlgorithm.getFilePath() |
boolean |
ConvertImpImageToImagePlusAlgorithm.isCreateCheckerboard() |
boolean |
ImportImpImageAlgorithm.isGreyscaleCorrection() |
void |
ConvertImpImageToImagePlusAlgorithm.setCheckerboardColor1(Color checkerboardColor1) |
void |
ConvertImpImageToImagePlusAlgorithm.setCheckerboardColor2(Color checkerboardColor2) |
void |
ConvertImpImageToImagePlusAlgorithm.setCheckerboardSize(int checkerboardSize) |
void |
ConvertImpImageToImagePlusAlgorithm.setCreateCheckerboard(boolean createCheckerboard) |
void |
ExportImpImageAlgorithm.setFileFormat(ImpImageOutputFormat fileFormat) |
void |
ExportImpImageAlgorithm.setFilePath(DataExportExpressionParameter filePath) |
void |
ImportImpImageAlgorithm.setGreyscaleCorrection(boolean greyscaleCorrection) |
Modifier and Type | Method and Description |
---|---|
JIPipeTextAnnotationMergeMode |
ParametersToAnnotationsAlgorithm.getAnnotationMergeStrategy() |
ParameterCollectionList |
DefineParametersFromTableAlgorithm.getColumns() |
ParameterCollectionList |
GenerateParametersFromExpressionAlgorithm.getColumns() |
JIPipeDynamicParameterCollection |
AnnotationsToParametersAlgorithm.getExtractedParameters() |
String |
DefineParametersFromTableAlgorithm.Column.getKey() |
String |
GenerateParametersFromExpressionAlgorithm.Column.getKey() |
OptionalTextAnnotationNameParameter |
ExtractParametersAlgorithm.getNodeAliasIDAnnotation() |
OptionalTextAnnotationNameParameter |
ExtractParametersAlgorithm.getNodeNameAnnotation() |
OptionalTextAnnotationNameParameter |
ExtractParametersAlgorithm.getNodeUUIDAnnotation() |
StringQueryExpression |
ExtractParametersAlgorithm.getParameterKeyFilter() |
GeneratedParameters |
DefineParametersAlgorithm.getParameters() |
ParameterTable |
DefineParametersTableAlgorithm.getParameterTable() |
TableColumnSourceExpressionParameter |
DefineParametersFromTableAlgorithm.Column.getTableColumn() |
JIPipeParameterTypeInfoRef |
DefineParametersFromTableAlgorithm.Column.getType() |
JIPipeParameterTypeInfoRef |
GenerateParametersFromExpressionAlgorithm.Column.getType() |
JIPipeExpressionParameter |
GenerateParametersFromExpressionAlgorithm.Column.getValues() |
boolean |
AnnotationsToParametersAlgorithm.isIgnoreInvalidValues() |
boolean |
DefineParametersFromTableAlgorithm.Column.isValuesAreJson() |
boolean |
GenerateParametersFromExpressionAlgorithm.Column.isValuesAreJson() |
void |
ParametersToAnnotationsAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy) |
void |
DefineParametersFromTableAlgorithm.setColumns(ParameterCollectionList columns) |
void |
GenerateParametersFromExpressionAlgorithm.setColumns(ParameterCollectionList columns) |
void |
AnnotationsToParametersAlgorithm.setIgnoreInvalidValues(boolean ignoreInvalidValues) |
void |
DefineParametersFromTableAlgorithm.Column.setKey(String key) |
void |
GenerateParametersFromExpressionAlgorithm.Column.setKey(String key) |
void |
ExtractParametersAlgorithm.setNodeAliasIDAnnotation(OptionalTextAnnotationNameParameter nodeAliasIDAnnotation) |
void |
ExtractParametersAlgorithm.setNodeNameAnnotation(OptionalTextAnnotationNameParameter nodeNameAnnotation) |
void |
ExtractParametersAlgorithm.setNodeUUIDAnnotation(OptionalTextAnnotationNameParameter nodeUUIDAnnotation) |
void |
ExtractParametersAlgorithm.setParameterKeyFilter(StringQueryExpression parameterKeyFilter) |
void |
DefineParametersTableAlgorithm.setParameterTable(ParameterTable parameterTable) |
void |
DefineParametersFromTableAlgorithm.Column.setTableColumn(TableColumnSourceExpressionParameter tableColumn) |
void |
DefineParametersFromTableAlgorithm.Column.setType(JIPipeParameterTypeInfoRef type) |
void |
GenerateParametersFromExpressionAlgorithm.Column.setType(JIPipeParameterTypeInfoRef type) |
void |
GenerateParametersFromExpressionAlgorithm.Column.setValues(JIPipeExpressionParameter values) |
void |
DefineParametersFromTableAlgorithm.Column.setValuesAreJson(boolean valuesAreJson) |
void |
GenerateParametersFromExpressionAlgorithm.Column.setValuesAreJson(boolean valuesAreJson) |
Modifier and Type | Method and Description |
---|---|
OMEROCredentialsEnvironment |
OMEROSettings.getDefaultCredentials() |
String |
OMEROCredentialsEnvironment.getEmail() |
String |
OMEROCredentialsEnvironment.getHost() |
PasswordParameter |
OMEROCredentialsEnvironment.getPassword() |
int |
OMEROCredentialsEnvironment.getPort() |
OMEROCredentialsEnvironment.List |
OMEROSettings.getPresets() |
String |
OMEROCredentialsEnvironment.getUserName() |
String |
OMEROCredentialsEnvironment.getWebclientUrl() |
void |
OMEROSettings.setDefaultCredentials(OMEROCredentialsEnvironment defaultCredentials) |
void |
OMEROCredentialsEnvironment.setEmail(String email) |
void |
OMEROCredentialsEnvironment.setHost(String host) |
void |
OMEROCredentialsEnvironment.setPassword(PasswordParameter password) |
void |
OMEROCredentialsEnvironment.setPort(int port) |
void |
OMEROSettings.setPresets(OMEROCredentialsEnvironment.List presets) |
void |
OMEROCredentialsEnvironment.setUserName(String userName) |
void |
OMEROCredentialsEnvironment.setWebclientUrl(String webclientUrl) |
Modifier and Type | Method and Description |
---|---|
LongList |
OMERODatasetReferenceDataSource.getDatasetIds() |
LongList |
OMEROGroupReferenceDataSource.getGroupIds() |
LongList |
OMEROImageReferenceDataSource.getImageIds() |
OptionalOMEROCredentialsEnvironment |
OMEROImageReferenceDataSource.getOverrideCredentials() |
OptionalOMEROCredentialsEnvironment |
OMERODatasetReferenceDataSource.getOverrideCredentials() |
OptionalOMEROCredentialsEnvironment |
OMEROProjectReferenceDataSource.getOverrideCredentials() |
LongList |
OMEROProjectReferenceDataSource.getProjectIds() |
void |
OMERODatasetReferenceDataSource.setDatasetIds(LongList datasetIds) |
void |
OMEROGroupReferenceDataSource.setGroupIds(LongList groupIds) |
void |
OMEROImageReferenceDataSource.setImageIds(LongList imageIds) |
void |
OMEROImageReferenceDataSource.setOverrideCredentials(OptionalOMEROCredentialsEnvironment overrideCredentials) |
void |
OMERODatasetReferenceDataSource.setOverrideCredentials(OptionalOMEROCredentialsEnvironment overrideCredentials) |
void |
OMEROProjectReferenceDataSource.setOverrideCredentials(OptionalOMEROCredentialsEnvironment overrideCredentials) |
void |
OMEROProjectReferenceDataSource.setProjectIds(LongList projectIds) |
Modifier and Type | Method and Description |
---|---|
AnnotationsToOMEROKeyValuePairExporter |
OMEROCreateDatasetAlgorithm.getKeyValuePairExporter() |
JIPipeExpressionParameter |
OMEROCreateDatasetAlgorithm.getNameGenerator() |
OptionalOMEROCredentialsEnvironment |
OMEROCreateDatasetAlgorithm.getOverrideCredentials() |
AnnotationsToOMEROTagExporter |
OMEROCreateDatasetAlgorithm.getTagExporter() |
void |
OMEROCreateDatasetAlgorithm.setNameGenerator(JIPipeExpressionParameter nameGenerator) |
void |
OMEROCreateDatasetAlgorithm.setOverrideCredentials(OptionalOMEROCredentialsEnvironment overrideCredentials) |
Modifier and Type | Method and Description |
---|---|
JIPipeExpressionParameter |
OMEROKeyValuePairToAnnotationImporter.getAnnotationName() |
JIPipeExpressionParameter |
OMEROKeyValuePairToAnnotationImporter.getAnnotationValue() |
OMEColorMode |
ImageImportParameters.getColorMode() |
RectangleList |
ImageImportParameters.getCropRegions() |
JIPipeExpressionParameter |
OMEROKeyValuePairToAnnotationImporter.getFilter() |
JIPipeExpressionParameter |
AnnotationsToOMEROKeyValuePairExporter.getFilter() |
JIPipeExpressionParameter |
AnnotationsToOMEROKeyValuePairExporter.getKeyValuePairKey() |
JIPipeExpressionParameter |
AnnotationsToOMEROKeyValuePairExporter.getKeyValuePairValue() |
ome.xml.model.enums.DimensionOrder |
ImageImportParameters.getStackOrder() |
OptionalTextAnnotationNameParameter |
AnnotationsToOMEROTagExporter.getTagListAnnotation() |
OptionalTextAnnotationNameParameter |
OMEROTagToAnnotationImporter.getTagsToListAnnotation() |
StringQueryExpression |
OMEROTagToAnnotationImporter.getTagsToListFilter() |
boolean |
ImageImportParameters.isAutoScale() |
boolean |
ImageImportParameters.isConcatenate() |
boolean |
ImageImportParameters.isCrop() |
boolean |
OMEROKeyValuePairToAnnotationImporter.isEnabled() |
boolean |
AnnotationsToOMEROKeyValuePairExporter.isEnabled() |
boolean |
ImageImportParameters.isExtractRois() |
boolean |
ImageImportParameters.isSplitChannels() |
boolean |
ImageImportParameters.isSplitFocalPlanes() |
boolean |
ImageImportParameters.isSplitTimePoints() |
boolean |
ImageImportParameters.isStitchTiles() |
boolean |
ImageImportParameters.isSwapDimensions() |
void |
OMEROKeyValuePairToAnnotationImporter.setAnnotationName(JIPipeExpressionParameter annotationName) |
void |
OMEROKeyValuePairToAnnotationImporter.setAnnotationValue(JIPipeExpressionParameter annotationValue) |
void |
ImageImportParameters.setAutoScale(boolean autoScale) |
void |
ImageImportParameters.setColorMode(OMEColorMode colorMode) |
void |
ImageImportParameters.setConcatenate(boolean concatenate) |
void |
ImageImportParameters.setCrop(boolean crop) |
void |
ImageImportParameters.setCropRegions(RectangleList cropRegions) |
void |
OMEROKeyValuePairToAnnotationImporter.setEnabled(boolean enabled) |
void |
AnnotationsToOMEROKeyValuePairExporter.setEnabled(boolean enabled) |
void |
ImageImportParameters.setExtractRois(boolean extractRois) |
void |
OMEROKeyValuePairToAnnotationImporter.setFilter(JIPipeExpressionParameter filter) |
void |
AnnotationsToOMEROKeyValuePairExporter.setFilter(JIPipeExpressionParameter filter) |
void |
AnnotationsToOMEROKeyValuePairExporter.setKeyValuePairKey(JIPipeExpressionParameter keyValuePairKey) |
void |
AnnotationsToOMEROKeyValuePairExporter.setKeyValuePairValue(JIPipeExpressionParameter keyValuePairValue) |
void |
ImageImportParameters.setSplitChannels(boolean splitChannels) |
void |
ImageImportParameters.setSplitFocalPlanes(boolean splitFocalPlanes) |
void |
ImageImportParameters.setSplitTimePoints(boolean splitTimePoints) |
void |
ImageImportParameters.setStackOrder(ome.xml.model.enums.DimensionOrder stackOrder) |
void |
ImageImportParameters.setStitchTiles(boolean stitchTiles) |
void |
ImageImportParameters.setSwapDimensions(boolean swapDimensions) |
void |
AnnotationsToOMEROTagExporter.setTagListAnnotation(OptionalTextAnnotationNameParameter tagListAnnotation) |
void |
OMEROTagToAnnotationImporter.setTagsToListAnnotation(OptionalTextAnnotationNameParameter tagsToListAnnotation) |
void |
OMEROTagToAnnotationImporter.setTagsToListFilter(StringQueryExpression tagsToListFilter) |
Modifier and Type | Method and Description |
---|---|
StringList |
OmniposeSettings.getEasyInstallerRepositories() |
OptionalPythonEnvironment |
OmniposeSettings.getOverridePythonEnvironment() |
void |
OmniposeSettings.setEasyInstallerRepositories(StringList easyInstallerRepositories) |
void |
OmniposeSettings.setOverridePythonEnvironment(OptionalPythonEnvironment overridePythonEnvironment) |
Modifier and Type | Method and Description |
---|---|
CellposeChannelSettings |
OmniposeAlgorithm.getChannelSettings() |
CellposeChannelSettings |
OmniposeTrainingAlgorithm.getChannelSettings() |
OptionalDoubleParameter |
OmniposeAlgorithm.getDiameter() |
OptionalDoubleParameter |
OmniposeTrainingAlgorithm.getDiameter() |
OptionalTextAnnotationNameParameter |
OmniposeAlgorithm.getDiameterAnnotation() |
OmniposeSegmentationTweaksSettings |
OmniposeAlgorithm.getEnhancementParameters() |
CellposeGPUSettings |
OmniposeAlgorithm.getGpuSettings() |
CellposeGPUSettings |
OmniposeTrainingAlgorithm.getGpuSettings() |
DataAnnotationQueryExpression |
OmniposeTrainingAlgorithm.getLabelDataAnnotation() |
OmniposeModel |
OmniposeAlgorithm.getModel() |
int |
OmniposeTrainingAlgorithm.getNumEpochs() |
OptionalPythonEnvironment |
OmniposeAlgorithm.getOverrideEnvironment() |
OptionalPythonEnvironment |
OmniposeTrainingAlgorithm.getOverrideEnvironment() |
OmniposePretrainedModel |
OmniposeTrainingAlgorithm.getPretrainedModel() |
CellposeSegmentationOutputSettings |
OmniposeAlgorithm.getSegmentationOutputSettings() |
OmniposeSegmentationThresholdSettings |
OmniposeAlgorithm.getThresholdParameters() |
OmniposeTrainingTweaksSettings |
OmniposeTrainingAlgorithm.getTweaksSettings() |
boolean |
OmniposeAlgorithm.isCleanUpAfterwards() |
boolean |
OmniposeTrainingAlgorithm.isCleanUpAfterwards() |
boolean |
OmniposeAlgorithm.isEnable3DSegmentation() |
boolean |
OmniposeTrainingAlgorithm.isEnable3DSegmentation() |
boolean |
OmniposeTrainingAlgorithm.isTrainSizeModel() |
void |
OmniposeAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards) |
void |
OmniposeTrainingAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards) |
void |
OmniposeAlgorithm.setDiameter(OptionalDoubleParameter diameter) |
void |
OmniposeTrainingAlgorithm.setDiameter(OptionalDoubleParameter diameter) |
void |
OmniposeAlgorithm.setDiameterAnnotation(OptionalTextAnnotationNameParameter diameterAnnotation) |
void |
OmniposeAlgorithm.setEnable3DSegmentation(boolean enable3DSegmentation) |
void |
OmniposeTrainingAlgorithm.setEnable3DSegmentation(boolean enable3DSegmentation) |
void |
OmniposeTrainingAlgorithm.setLabelDataAnnotation(DataAnnotationQueryExpression labelDataAnnotation) |
void |
OmniposeAlgorithm.setModel(OmniposeModel model) |
void |
OmniposeTrainingAlgorithm.setNumEpochs(int numEpochs) |
void |
OmniposeAlgorithm.setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment) |
void |
OmniposeTrainingAlgorithm.setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment) |
void |
OmniposeTrainingAlgorithm.setPretrainedModel(OmniposePretrainedModel pretrainedModel) |
void |
OmniposeTrainingAlgorithm.setTrainSizeModel(boolean trainSizeModel) |
Modifier and Type | Method and Description |
---|---|
OptionalDoubleParameter |
OmniposeSegmentationTweaksSettings.getAnisotropy() |
int |
OmniposeTrainingTweaksSettings.getBatchSize() |
double |
OmniposeSegmentationThresholdSettings.getDiamThreshold() |
double |
OmniposeSegmentationThresholdSettings.getFlowThreshold() |
double |
OmniposeTrainingTweaksSettings.getLearningRate() |
double |
OmniposeSegmentationThresholdSettings.getMaskThreshold() |
int |
OmniposeTrainingTweaksSettings.getMinTrainMasks() |
OptionalDoubleParameter |
OmniposeSegmentationThresholdSettings.getStitchThreshold() |
boolean |
OmniposeSegmentationTweaksSettings.isCluster() |
boolean |
OmniposeTrainingTweaksSettings.isConcatenateDownsampledLayers() |
boolean |
OmniposeSegmentationTweaksSettings.isDisableResample() |
boolean |
OmniposeSegmentationThresholdSettings.isExcludeOnEdges() |
boolean |
OmniposeSegmentationTweaksSettings.isFastMode() |
boolean |
OmniposeTrainingTweaksSettings.isGenerateConnectedComponents() |
boolean |
OmniposeSegmentationTweaksSettings.isInterpolate() |
boolean |
OmniposeSegmentationTweaksSettings.isNetAverage() |
boolean |
OmniposeTrainingTweaksSettings.isUseResidualConnections() |
boolean |
OmniposeTrainingTweaksSettings.isUseStyleVector() |
void |
OmniposeSegmentationTweaksSettings.setAnisotropy(OptionalDoubleParameter anisotropy) |
void |
OmniposeTrainingTweaksSettings.setBatchSize(int batchSize) |
void |
OmniposeSegmentationTweaksSettings.setCluster(boolean cluster) |
void |
OmniposeTrainingTweaksSettings.setConcatenateDownsampledLayers(boolean concatenateDownsampledLayers) |
void |
OmniposeSegmentationThresholdSettings.setDiamThreshold(double diamThreshold) |
void |
OmniposeSegmentationTweaksSettings.setDisableResample(boolean disableResample) |
void |
OmniposeSegmentationThresholdSettings.setExcludeOnEdges(boolean excludeOnEdges) |
void |
OmniposeSegmentationTweaksSettings.setFastMode(boolean fastMode) |
void |
OmniposeSegmentationThresholdSettings.setFlowThreshold(double flowThreshold) |
void |
OmniposeTrainingTweaksSettings.setGenerateConnectedComponents(boolean generateConnectedComponents) |
void |
OmniposeSegmentationTweaksSettings.setInterpolate(boolean interpolate) |
void |
OmniposeTrainingTweaksSettings.setLearningRate(double learningRate) |
void |
OmniposeSegmentationThresholdSettings.setMaskThreshold(double maskThreshold) |
void |
OmniposeTrainingTweaksSettings.setMinTrainMasks(int minTrainMasks) |
void |
OmniposeSegmentationTweaksSettings.setNetAverage(boolean netAverage) |
void |
OmniposeSegmentationThresholdSettings.setStitchThreshold(OptionalDoubleParameter stitchThreshold) |
void |
OmniposeTrainingTweaksSettings.setUseResidualConnections(boolean useResidualConnections) |
void |
OmniposeTrainingTweaksSettings.setUseStyleVector(boolean useStyleVector) |
Modifier and Type | Method and Description |
---|---|
DynamicStringSetParameter |
EnumParameterGenerator.getGeneratedValues() |
void |
EnumParameterGenerator.setGeneratedValues(DynamicStringSetParameter generatedValues) |
Modifier and Type | Method and Description |
---|---|
String |
FileChooserBookmark.getName() |
Path |
FileChooserBookmark.getPath() |
void |
FileChooserBookmark.setName(String name) |
void |
FileChooserBookmark.setPath(Path path) |
Modifier and Type | Method and Description |
---|---|
double |
StringOrDouble.getDoubleValue() |
double |
NumberRangeParameterGenerator.getMaxNumber() |
double |
NumberRangeParameterGenerator.getMinNumber() |
StringOrDouble.Mode |
StringOrDouble.getMode() |
double |
NumberRangeParameterGenerator.getStepSize() |
String |
StringOrDouble.getStringValue() |
void |
StringOrDouble.setDoubleValue(double doubleValue) |
void |
NumberRangeParameterGenerator.setMaxNumber(double maxNumber) |
void |
NumberRangeParameterGenerator.setMinNumber(double minNumber) |
void |
StringOrDouble.setMode(StringOrDouble.Mode mode) |
void |
NumberRangeParameterGenerator.setStepSize(double stepSize) |
void |
StringOrDouble.setStringValue(String String) |
Modifier and Type | Method and Description |
---|---|
OptionalBooleanParameter |
ImageJDataExportOperationRef.getActivate() |
OptionalBooleanParameter |
ImageJDataExportOperationRef.getAppend() |
OptionalBooleanParameter |
ImageJDataExportOperationRef.getDuplicate() |
OptionalBooleanParameter |
ImageJDataImportOperationRef.getDuplicate() |
OptionalStringParameter |
ImageJDataExportOperationRef.getName() |
OptionalStringParameter |
ImageJDataImportOperationRef.getName() |
OptionalBooleanParameter |
ImageJDataExportOperationRef.getNoWindows() |
void |
ImageJDataExportOperationRef.setActivate(OptionalBooleanParameter activate) |
void |
ImageJDataExportOperationRef.setAppend(OptionalBooleanParameter append) |
void |
ImageJDataExportOperationRef.setDuplicate(OptionalBooleanParameter duplicate) |
void |
ImageJDataImportOperationRef.setDuplicate(OptionalBooleanParameter duplicate) |
void |
ImageJDataExportOperationRef.setName(OptionalStringParameter name) |
void |
ImageJDataImportOperationRef.setName(OptionalStringParameter name) |
void |
ImageJDataExportOperationRef.setNoWindows(OptionalBooleanParameter noWindows) |
Modifier and Type | Method and Description |
---|---|
int |
RenderPipelineRunSettings.getLabelFontSize() |
OptionalIntegerParameter |
RenderPipelineRunSettings.getMaxEdgeWidth() |
boolean |
RenderPipelineRunSettings.isRenderLabel() |
boolean |
RenderPipelineRunSettings.isRenderShadow() |
void |
RenderPipelineRunSettings.setLabelFontSize(int labelFontSize) |
void |
RenderPipelineRunSettings.setMaxEdgeWidth(OptionalIntegerParameter maxEdgeWidth) |
void |
RenderPipelineRunSettings.setRenderLabel(boolean renderLabel) |
void |
RenderPipelineRunSettings.setRenderShadow(boolean renderShadow) |
Modifier and Type | Method and Description |
---|---|
Color |
PlotData.getBackgroundColor() |
int |
HistogramPlotData.getBinAxisFontSize() |
String |
HistogramPlotData.getBinAxisLabel() |
OptionalDoubleParameter |
HistogramPlotData.getBinAxisMaximum() |
OptionalDoubleParameter |
HistogramPlotData.getBinAxisMinimum() |
int |
HistogramPlotData.getBins() |
int |
CategoryPlotData.getCategoryAxisFontSize() |
String |
CategoryPlotData.getCategoryAxisLabel() |
ColorMap |
PlotData.getColorMap() |
ColorListParameter |
PlotData.getCustomColorMap() |
int |
PlotData.getExportHeight() |
int |
PlotData.getExportWidth() |
Color |
PlotData.getGridColor() |
HistogramPlotData.HistogramType_ |
HistogramPlotData.getHistogramType() |
int |
Pie3DPlotData.getLabelFontSize() |
int |
Pie2DPlotData.getLabelFontSize() |
int |
PlotData.getLegendFontSize() |
int |
LineCategoryPlotData.getLineThickness() |
int |
LineXYPlotData.getLineThickness() |
int |
LineStatisticalCategoryPlotData.getLineThickness() |
String |
PlotDataSeries.getName() |
String |
PlotData.getTitle() |
int |
PlotData.getTitleFontSize() |
int |
CategoryPlotData.getValueAxisFontSize() |
int |
HistogramPlotData.getValueAxisFontSize() |
String |
CategoryPlotData.getValueAxisLabel() |
String |
HistogramPlotData.getValueAxisLabel() |
OptionalDoubleParameter |
CategoryPlotData.getValueAxisMaximum() |
OptionalDoubleParameter |
HistogramPlotData.getValueAxisMaximum() |
OptionalDoubleParameter |
CategoryPlotData.getValueAxisMinimum() |
OptionalDoubleParameter |
HistogramPlotData.getValueAxisMinimum() |
int |
XYPlotData.getxAxisFontSize() |
String |
XYPlotData.getxAxisLabel() |
OptionalDoubleParameter |
XYPlotData.getxAxisMaximum() |
OptionalDoubleParameter |
XYPlotData.getxAxisMinimum() |
int |
XYPlotData.getyAxisFontSize() |
String |
XYPlotData.getyAxisLabel() |
OptionalDoubleParameter |
XYPlotData.getyAxisMaximum() |
OptionalDoubleParameter |
XYPlotData.getyAxisMinimum() |
boolean |
PlotData.isUseCustomColorMap() |
boolean |
PlotData.isWithLegend() |
void |
PlotData.setBackgroundColor(Color backgroundColor) |
void |
HistogramPlotData.setBinAxisFontSize(int binAxisFontSize) |
void |
HistogramPlotData.setBinAxisLabel(String binAxisLabel) |
void |
HistogramPlotData.setBinAxisMaximum(OptionalDoubleParameter binAxisMaximum) |
void |
HistogramPlotData.setBinAxisMinimum(OptionalDoubleParameter binAxisMinimum) |
void |
HistogramPlotData.setBins(int bins) |
void |
CategoryPlotData.setCategoryAxisFontSize(int categoryAxisFontSize) |
void |
CategoryPlotData.setCategoryAxisLabel(String categoryAxisLabel) |
void |
PlotData.setColorMap(ColorMap colorMap) |
void |
PlotData.setCustomColorMap(ColorListParameter customColorMap) |
void |
PlotData.setExportHeight(int exportHeight) |
void |
PlotData.setExportWidth(int exportWidth) |
void |
PlotData.setGridColor(Color gridColor) |
void |
HistogramPlotData.setHistogramType(HistogramPlotData.HistogramType_ histogramType) |
boolean |
Pie3DPlotData.setLabelFontSize(int labelFontSize) |
boolean |
Pie2DPlotData.setLabelFontSize(int labelFontSize) |
void |
PlotData.setLegendFontSize(int legendFontSize) |
void |
LineCategoryPlotData.setLineThickness(int lineThickness) |
void |
LineXYPlotData.setLineThickness(int lineThickness) |
void |
LineStatisticalCategoryPlotData.setLineThickness(int lineThickness) |
void |
PlotDataSeries.setName(String name) |
void |
PlotData.setTitle(String title)
Sets the plot title
|
boolean |
PlotData.setTitleFontSize(int titleFontSize) |
void |
PlotData.setUseCustomColorMap(boolean useCustomColorMap) |
void |
CategoryPlotData.setValueAxisFontSize(int valueAxisFontSize) |
void |
HistogramPlotData.setValueAxisFontSize(int valueAxisFontSize) |
void |
CategoryPlotData.setValueAxisLabel(String valueAxisLabel) |
void |
HistogramPlotData.setValueAxisLabel(String valueAxisLabel) |
void |
CategoryPlotData.setValueAxisMaximum(OptionalDoubleParameter valueAxisMaximum) |
void |
HistogramPlotData.setValueAxisMaximum(OptionalDoubleParameter valueAxisMaximum) |
void |
CategoryPlotData.setValueAxisMinimum(OptionalDoubleParameter valueAxisMinimum) |
void |
HistogramPlotData.setValueAxisMinimum(OptionalDoubleParameter valueAxisMinimum) |
void |
PlotData.setWithLegend(boolean withLegend) |
void |
XYPlotData.setxAxisFontSize(int xAxisFontSize) |
void |
XYPlotData.setxAxisLabel(String xAxisLabel) |
void |
XYPlotData.setxAxisMaximum(OptionalDoubleParameter xAxisMaximum) |
void |
XYPlotData.setxAxisMinimum(OptionalDoubleParameter xAxisMinimum) |
void |
XYPlotData.setyAxisFontSize(int yAxisFontSize) |
void |
XYPlotData.setyAxisLabel(String yAxisLabel) |
void |
XYPlotData.setyAxisMaximum(OptionalDoubleParameter yAxisMaximum) |
void |
XYPlotData.setyAxisMinimum(OptionalDoubleParameter yAxisMinimum) |
Modifier and Type | Method and Description |
---|---|
JIPipeDynamicParameterCollection |
PlotTables2Algorithm.getInputColumns() |
JIPipeDynamicParameterCollection |
PlotTablesAlgorithm.getInputColumns()
Deprecated.
|
JIPipeDataInfoRef |
PlotTablesAlgorithm.getPlotType()
Deprecated.
|
PlotData |
PlotTables2Algorithm.getPlotTypeParameters() |
PlotData |
PlotTablesAlgorithm.getPlotTypeParameters()
Deprecated.
|
StringQueryExpression |
PlotTables2Algorithm.getSeriesName() |
StringQueryExpression |
PlotTablesAlgorithm.getSeriesName()
Deprecated.
|
void |
PlotTablesAlgorithm.setPlotType(JIPipeDataInfoRef plotType)
Deprecated.
|
void |
PlotTables2Algorithm.setSeriesName(StringQueryExpression seriesName) |
void |
PlotTablesAlgorithm.setSeriesName(StringQueryExpression seriesName)
Deprecated.
|
Modifier and Type | Method and Description |
---|---|
JIPipeExpressionParameter |
PythonEnvironment.getArguments() |
StringList |
PythonExtensionSettings.getEasyInstallerRepositories() |
StringQueryExpressionAndStringPairParameter.List |
PythonEnvironment.getEnvironmentVariables() |
Path |
PythonEnvironment.getExecutablePath() |
Path |
PythonPackageLibraryEnvironment.getLibraryDirectory() |
PythonEnvironment.List |
PythonExtensionSettings.getPresets() |
PythonEnvironment |
PythonExtensionSettings.getPythonEnvironment() |
PythonEnvironmentType |
PythonEnvironment.getType() |
boolean |
PythonPackageLibraryEnvironment.isProvidedByEnvironment() |
void |
PythonEnvironment.setArguments(JIPipeExpressionParameter arguments) |
void |
PythonExtensionSettings.setEasyInstallerRepositories(StringList easyInstallerRepositories) |
void |
PythonEnvironment.setEnvironmentVariables(StringQueryExpressionAndStringPairParameter.List environmentVariables) |
void |
PythonEnvironment.setExecutablePath(Path executablePath) |
void |
PythonPackageLibraryEnvironment.setLibraryDirectory(Path libraryDirectory) |
void |
PythonExtensionSettings.setPresets(PythonEnvironment.List presets) |
void |
PythonPackageLibraryEnvironment.setProvidedByEnvironment(boolean providedByEnvironment) |
void |
PythonExtensionSettings.setPythonEnvironment(PythonEnvironment pythonEnvironment) |
void |
PythonEnvironment.setType(PythonEnvironmentType type) |
Modifier and Type | Method and Description |
---|---|
StringList |
PythonAdapterExtensionSettings.getEasyInstallerRepositories() |
JIPipePythonAdapterLibraryEnvironment |
PythonAdapterExtensionSettings.getPythonAdapterLibraryEnvironment() |
JIPipePythonAdapterLibraryEnvironment.List |
PythonAdapterExtensionSettings.getPythonAdapterPresets() |
boolean |
PythonAdapterExtensionSettings.isCheckForUpdates() |
void |
PythonAdapterExtensionSettings.setCheckForUpdates(boolean checkForUpdates) |
void |
PythonAdapterExtensionSettings.setEasyInstallerRepositories(StringList easyInstallerRepositories) |
void |
PythonAdapterExtensionSettings.setPythonAdapterLibraryEnvironment(JIPipePythonAdapterLibraryEnvironment pythonAdapterLibraryEnvironment) |
void |
PythonAdapterExtensionSettings.setPythonAdapterPresets(JIPipePythonAdapterLibraryEnvironment.List pythonAdapterPresets) |
Modifier and Type | Method and Description |
---|---|
JIPipeTextAnnotationMergeMode |
PythonScriptAlgorithm.getAnnotationMergeStrategy() |
JIPipeTextAnnotationMergeMode |
IteratingPythonScriptAlgorithm.getAnnotationMergeStrategy() |
JIPipeTextAnnotationMergeMode |
MergingPythonScriptAlgorithm.getAnnotationMergeStrategy() |
PythonScript |
JythonScriptAlgorithm.getCode() |
PythonScript |
SimpleIteratingJythonScriptAlgorithm.getCode() |
PythonScript |
PythonScriptAlgorithm.getCode() |
PythonScript |
MergingJythonScriptAlgorithm.getCode() |
PythonScript |
IteratingJythonScriptAlgorithm.getCode() |
PythonScript |
IteratingPythonScriptAlgorithm.getCode() |
PythonScript |
MergingPythonScriptAlgorithm.getCode() |
OptionalPythonEnvironment |
PythonScriptAlgorithm.getOverrideEnvironment() |
OptionalPythonEnvironment |
IteratingPythonScriptAlgorithm.getOverrideEnvironment() |
OptionalPythonEnvironment |
MergingPythonScriptAlgorithm.getOverrideEnvironment() |
JIPipeDynamicParameterCollection |
JythonScriptAlgorithm.getScriptParameters() |
JIPipeDynamicParameterCollection |
SimpleIteratingJythonScriptAlgorithm.getScriptParameters() |
JIPipeDynamicParameterCollection |
PythonScriptAlgorithm.getScriptParameters() |
JIPipeDynamicParameterCollection |
MergingJythonScriptAlgorithm.getScriptParameters() |
JIPipeDynamicParameterCollection |
IteratingJythonScriptAlgorithm.getScriptParameters() |
JIPipeDynamicParameterCollection |
IteratingPythonScriptAlgorithm.getScriptParameters() |
JIPipeDynamicParameterCollection |
MergingPythonScriptAlgorithm.getScriptParameters() |
boolean |
PythonScriptAlgorithm.isCleanUpAfterwards() |
boolean |
IteratingPythonScriptAlgorithm.isCleanUpAfterwards() |
boolean |
MergingPythonScriptAlgorithm.isCleanUpAfterwards() |
void |
PythonScriptAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy) |
void |
IteratingPythonScriptAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy) |
void |
MergingPythonScriptAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy) |
void |
PythonScriptAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards) |
void |
IteratingPythonScriptAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards) |
void |
MergingPythonScriptAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards) |
void |
JythonScriptAlgorithm.setCode(PythonScript code) |
void |
SimpleIteratingJythonScriptAlgorithm.setCode(PythonScript code) |
void |
PythonScriptAlgorithm.setCode(PythonScript code) |
void |
MergingJythonScriptAlgorithm.setCode(PythonScript code) |
void |
IteratingJythonScriptAlgorithm.setCode(PythonScript code) |
void |
IteratingPythonScriptAlgorithm.setCode(PythonScript code) |
void |
MergingPythonScriptAlgorithm.setCode(PythonScript code) |
void |
PythonScriptAlgorithm.setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment) |
void |
IteratingPythonScriptAlgorithm.setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment) |
void |
MergingPythonScriptAlgorithm.setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment) |
Modifier and Type | Method and Description |
---|---|
String |
BasicMinicondaEnvPythonInstaller.Configuration.getCondaDownloadURL() |
Path |
SelectCondaEnvPythonInstaller.Configuration.getCondaExecutable() |
OptionalPathParameter |
BasicMinicondaEnvPythonInstaller.Configuration.getCustomInstallerPath() |
String |
SelectCondaEnvPythonInstaller.Configuration.getEnvironmentName() |
OptionalStringParameter |
BasicMinicondaEnvPythonInstaller.Configuration.getForcePythonVersion() |
Path |
BasicMinicondaEnvPythonInstaller.Configuration.getInstallationPath() |
Path |
BasicPortableEnvPythonInstaller.Configuration.getInstallationPath() |
String |
BasicMinicondaEnvPythonInstaller.Configuration.getName() |
String |
SelectSystemPythonInstaller.Configuration.getName() |
String |
BasicPortableEnvPythonInstaller.Configuration.getName() |
String |
SelectCondaEnvPythonInstaller.Configuration.getName() |
String |
SelectVirtualEnvPythonInstaller.Configuration.getName() |
OptionalPathParameter |
SelectCondaEnvPythonInstaller.Configuration.getOverrideEnvironment() |
OptionalPathParameter |
BasicPortableEnvPythonInstaller.Configuration.getPreDownloadedArchivePath() |
String |
BasicPortableEnvPythonInstaller.Configuration.getPythonDownloadURL() |
Path |
SelectSystemPythonInstaller.Configuration.getPythonExecutable() |
Path |
SelectVirtualEnvPythonInstaller.Configuration.getVirtualEnvDirectory() |
boolean |
MinicondaEnvPythonInstaller.Configuration.isInstallNumpy() |
boolean |
PortableEnvPythonInstaller.Configuration.isInstallNumpy() |
boolean |
MinicondaEnvPythonInstaller.Configuration.isInstallPandas() |
boolean |
PortableEnvPythonInstaller.Configuration.isInstallPandas() |
boolean |
MinicondaEnvPythonInstaller.Configuration.isInstallScikitImage() |
boolean |
PortableEnvPythonInstaller.Configuration.isInstallScikitImage() |
boolean |
MinicondaEnvPythonInstaller.Configuration.isInstallScikitLearn() |
boolean |
PortableEnvPythonInstaller.Configuration.isInstallScikitLearn() |
boolean |
MinicondaEnvPythonInstaller.Configuration.isInstallTiffFile() |
boolean |
PortableEnvPythonInstaller.Configuration.isInstallTiffFile() |
void |
BasicMinicondaEnvPythonInstaller.Configuration.setCondaDownloadURL(String condaDownloadURL) |
void |
SelectCondaEnvPythonInstaller.Configuration.setCondaExecutable(Path condaExecutable) |
void |
BasicMinicondaEnvPythonInstaller.Configuration.setCustomInstallerPath(OptionalPathParameter customInstallerPath) |
void |
SelectCondaEnvPythonInstaller.Configuration.setEnvironmentName(String environmentName) |
void |
BasicMinicondaEnvPythonInstaller.Configuration.setForcePythonVersion(OptionalStringParameter forcePythonVersion) |
void |
BasicMinicondaEnvPythonInstaller.Configuration.setInstallationPath(Path installationPath) |
void |
BasicPortableEnvPythonInstaller.Configuration.setInstallationPath(Path installationPath) |
void |
MinicondaEnvPythonInstaller.Configuration.setInstallNumpy(boolean installNumpy) |
void |
PortableEnvPythonInstaller.Configuration.setInstallNumpy(boolean installNumpy) |
void |
MinicondaEnvPythonInstaller.Configuration.setInstallPandas(boolean installPandas) |
void |
PortableEnvPythonInstaller.Configuration.setInstallPandas(boolean installPandas) |
void |
MinicondaEnvPythonInstaller.Configuration.setInstallScikitImage(boolean installScikitImage) |
void |
PortableEnvPythonInstaller.Configuration.setInstallScikitImage(boolean installScikitImage) |
void |
MinicondaEnvPythonInstaller.Configuration.setInstallScikitLearn(boolean installScikitLearn) |
void |
PortableEnvPythonInstaller.Configuration.setInstallScikitLearn(boolean installScikitLearn) |
void |
MinicondaEnvPythonInstaller.Configuration.setInstallTiffFile(boolean installTiffFile) |
void |
PortableEnvPythonInstaller.Configuration.setInstallTiffFile(boolean installTiffFile) |
void |
BasicMinicondaEnvPythonInstaller.Configuration.setName(String name) |
void |
SelectSystemPythonInstaller.Configuration.setName(String name) |
void |
BasicPortableEnvPythonInstaller.Configuration.setName(String name) |
void |
SelectCondaEnvPythonInstaller.Configuration.setName(String name) |
void |
SelectVirtualEnvPythonInstaller.Configuration.setName(String name) |
void |
SelectCondaEnvPythonInstaller.Configuration.setOverrideEnvironment(OptionalPathParameter overrideEnvironment) |
void |
BasicPortableEnvPythonInstaller.Configuration.setPreDownloadedArchivePath(OptionalPathParameter preDownloadedArchivePath) |
void |
BasicPortableEnvPythonInstaller.Configuration.setPythonDownloadURL(String pythonDownloadURL) |
void |
SelectSystemPythonInstaller.Configuration.setPythonExecutable(Path pythonExecutable) |
void |
SelectVirtualEnvPythonInstaller.Configuration.setVirtualEnvDirectory(Path virtualEnvDirectory) |
Modifier and Type | Method and Description |
---|---|
JIPipeTextAnnotationMergeMode |
MergingRScriptAlgorithm.getAnnotationMergeStrategy() |
JIPipeTextAnnotationMergeMode |
IteratingRScriptAlgorithm.getAnnotationMergeStrategy() |
ImportRDatasetAlgorithm.Dataset |
ImportRDatasetAlgorithm.getDataset() |
OptionalREnvironment |
ImportRDatasetAlgorithm.getOverrideEnvironment() |
OptionalREnvironment |
MergingRScriptAlgorithm.getOverrideEnvironment() |
OptionalREnvironment |
IteratingRScriptAlgorithm.getOverrideEnvironment() |
RScriptParameter |
MergingRScriptAlgorithm.getScript() |
RScriptParameter |
IteratingRScriptAlgorithm.getScript() |
JIPipeDynamicParameterCollection |
MergingRScriptAlgorithm.getVariables() |
JIPipeDynamicParameterCollection |
IteratingRScriptAlgorithm.getVariables() |
boolean |
MergingRScriptAlgorithm.isCleanUpAfterwards() |
boolean |
IteratingRScriptAlgorithm.isCleanUpAfterwards() |
void |
MergingRScriptAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy) |
void |
IteratingRScriptAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy) |
void |
MergingRScriptAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards) |
void |
IteratingRScriptAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards) |
void |
ImportRDatasetAlgorithm.setDataset(ImportRDatasetAlgorithm.Dataset dataset) |
void |
ImportRDatasetAlgorithm.setOverrideEnvironment(OptionalREnvironment overrideEnvironment) |
void |
MergingRScriptAlgorithm.setOverrideEnvironment(OptionalREnvironment overrideEnvironment) |
void |
IteratingRScriptAlgorithm.setOverrideEnvironment(OptionalREnvironment overrideEnvironment) |
void |
MergingRScriptAlgorithm.setScript(RScriptParameter script) |
void |
IteratingRScriptAlgorithm.setScript(RScriptParameter script) |
Modifier and Type | Method and Description |
---|---|
OptionalPathParameter |
REnvInstaller.Configuration.getCustomInstallerPath() |
Path |
REnvInstaller.Configuration.getInstallationPath() |
String |
REnvInstaller.Configuration.getName() |
String |
REnvInstaller.Configuration.getRDownloadURL() |
void |
REnvInstaller.Configuration.setCustomInstallerPath(OptionalPathParameter customInstallerPath) |
void |
REnvInstaller.Configuration.setInstallationPath(Path installationPath) |
void |
REnvInstaller.Configuration.setName(String name) |
void |
REnvInstaller.Configuration.setRDownloadURL(String RDownloadURL) |
Modifier and Type | Method and Description |
---|---|
float |
Scene3DSphereGeometry.getCenterX() |
float |
Scene3DSphereGeometry.getCenterY() |
float |
Scene3DSphereGeometry.getCenterZ() |
Color |
Scene3DSphereGeometry.getColor() |
Color |
Scene3DLineGeometry.getColor() |
Scene3DLineGeometry.LineEndPoint |
Scene3DLineGeometry.getEnd() |
String |
Scene3DSphereGeometry.getName() |
String |
Scene3DLineGeometry.getName() |
float |
Scene3DLineGeometry.LineEndPoint.getRadius() |
float |
Scene3DSphereGeometry.getRadiusX() |
float |
Scene3DSphereGeometry.getRadiusY() |
float |
Scene3DSphereGeometry.getRadiusZ() |
Scene3DLineGeometry.LineEndPoint |
Scene3DLineGeometry.getStart() |
float |
Scene3DLineGeometry.LineEndPoint.getX() |
float |
Scene3DLineGeometry.LineEndPoint.getY() |
float |
Scene3DLineGeometry.LineEndPoint.getZ() |
void |
Scene3DSphereGeometry.setCenterX(float centerX) |
void |
Scene3DSphereGeometry.setCenterY(float centerY) |
void |
Scene3DSphereGeometry.setCenterZ(float centerZ) |
void |
Scene3DSphereGeometry.setColor(Color color) |
void |
Scene3DLineGeometry.setColor(Color color) |
void |
Scene3DSphereGeometry.setName(String name) |
void |
Scene3DLineGeometry.setName(String name) |
void |
Scene3DLineGeometry.LineEndPoint.setRadius(float radius) |
void |
Scene3DSphereGeometry.setRadiusX(float radiusX) |
void |
Scene3DSphereGeometry.setRadiusY(float radiusY) |
void |
Scene3DSphereGeometry.setRadiusZ(float radiusZ) |
void |
Scene3DLineGeometry.LineEndPoint.setX(float x) |
void |
Scene3DLineGeometry.LineEndPoint.setY(float y) |
void |
Scene3DLineGeometry.LineEndPoint.setZ(float z) |
Modifier and Type | Method and Description |
---|---|
JIPipeDataByMetadataExporter |
ExportScene3DToColladaAlgorithm.getExporter()
Deprecated.
|
DataExportExpressionParameter |
ExportScene3DToColladaAlgorithm2.getFilePath() |
Scene3DSphereGeometry |
CreateSphereMeshAlgorithm.getGeometry() |
Scene3DLineGeometry |
CreateLineMeshAlgorithm.getGeometry() |
String |
GroupSceneAlgorithm.getGroupName() |
Color |
MaskTo3DMeshAlgorithm.getMeshColor() |
Quantity.LengthUnit |
MaskTo3DMeshAlgorithm.getMeshLengthUnit() |
String |
MaskTo3DMeshAlgorithm.getMeshName() |
Path |
ExportScene3DToColladaAlgorithm.getOutputDirectory()
Deprecated.
|
boolean |
MaskTo3DMeshAlgorithm.isForceMeshLengthUnit() |
boolean |
ExportScene3DToColladaAlgorithm2.isIndexMeshes() |
boolean |
ExportScene3DToColladaAlgorithm.isIndexMeshes()
Deprecated.
|
boolean |
MaskTo3DMeshAlgorithm.isPhysicalSizes() |
boolean |
ExportScene3DToColladaAlgorithm.isRelativeToProjectDir()
Deprecated.
|
void |
ExportScene3DToColladaAlgorithm2.setFilePath(DataExportExpressionParameter filePath) |
void |
MaskTo3DMeshAlgorithm.setForceMeshLengthUnit(boolean forceMeshLengthUnit) |
void |
GroupSceneAlgorithm.setGroupName(String groupName) |
void |
ExportScene3DToColladaAlgorithm2.setIndexMeshes(boolean indexMeshes) |
void |
ExportScene3DToColladaAlgorithm.setIndexMeshes(boolean indexMeshes)
Deprecated.
|
void |
MaskTo3DMeshAlgorithm.setMeshColor(Color meshColor) |
void |
MaskTo3DMeshAlgorithm.setMeshLengthUnit(Quantity.LengthUnit meshLengthUnit) |
void |
MaskTo3DMeshAlgorithm.setMeshName(String meshName) |
void |
ExportScene3DToColladaAlgorithm.setOutputDirectory(Path outputDirectory)
Deprecated.
|
void |
MaskTo3DMeshAlgorithm.setPhysicalSizes(boolean physicalSizes) |
void |
ExportScene3DToColladaAlgorithm.setRelativeToProjectDir(boolean relativeToProjectDir)
Deprecated.
|
Modifier and Type | Method and Description |
---|---|
GraphEditorUISettings.AlgorithmFinderSettings |
GraphEditorUISettings.getAlgorithmFinderSettings() |
JIPipeExpressionParameter |
DownloadSettings.DownloadEnvironment.getArguments() |
int |
GraphEditorUISettings.getAutoHideEdgeDistanceThreshold() |
double |
GraphEditorUISettings.getAutoHideEdgeOverlapThreshold() |
GraphAutoLayout |
GraphEditorUISettings.getAutoLayout() |
int |
BackupSettings.getBackupDelay() |
StringList |
NotificationUISettings.getBlockedNotifications() |
FileChooserBookmarkList |
FileChooserSettings.getBookmarks() |
OptionalPathParameter |
BackupSettings.getCustomBackupPath() |
JIPipeGraphEdge.Visibility |
GraphEditorUISettings.getDefaultEdgeVisibility() |
int |
RuntimeSettings.getDefaultQuickRunThreads() |
int |
RuntimeSettings.getDefaultRunThreads() |
IntegerAndIntegerPairParameter.List |
GeneralDataSettings.getExportedPreviewSizes() |
DownloadSettings.DownloadEnvironment |
DownloadSettings.getExternalDownloaderProcess() |
FileChooserSettings.FileChooserType |
FileChooserSettings.getFileChooserType() |
Path |
FileChooserSettings.getLastDataDirectory() |
Path |
FileChooserSettings.getLastExternalDirectory() |
Path |
FileChooserSettings.getLastParametersDirectory() |
Path |
FileChooserSettings.getLastProjectsDirectory() |
int |
RuntimeSettings.getLogLimit() |
int |
HistoryJournalSettings.getMaxEntries() |
int |
GeneralDataSettings.getMaxTableColumnSize() |
StringList |
NodeTemplateSettings.getNodeTemplateDownloadRepositories() |
JIPipeNodeTemplate.List |
NodeTemplateSettings.getNodeTemplates() |
int |
GeneralDataSettings.getPreviewSize() |
ProjectsSettings.ProjectTemplateEnum |
ProjectsSettings.getProjectTemplate() |
StringList |
ProjectsSettings.getProjectTemplateDownloadRepositories() |
PathList |
ProjectsSettings.getRecentJsonExtensionProjects() |
PathList |
ProjectsSettings.getRecentProjects() |
GraphEditorUISettings.SearchSettings |
GraphEditorUISettings.getSearchSettings() |
OptionalIntegerParameter |
NotificationUISettings.getShowAfterMinRuntime() |
OptionalPathParameter |
RuntimeSettings.getTempDirectory() |
JIPipeUITheme |
GeneralUISettings.getTheme() |
int |
GraphEditorUISettings.getToolInfoDistance() |
boolean |
GeneralUISettings.isAddContextActionsToContextMenu() |
boolean |
FileChooserSettings.isAddFileExtension() |
boolean |
RuntimeSettings.isAllowCache() |
boolean |
GeneralUISettings.isAllowDefaultCollapsedParameters() |
boolean |
RuntimeSettings.isAllowSkipAlgorithmsWithoutInput() |
boolean |
GraphEditorUISettings.isAskOnDeleteCompartment() |
boolean |
GraphEditorUISettings.isAskOnDeleteNode() |
boolean |
GraphEditorUISettings.isAskOnDeleteParameter() |
boolean |
GraphEditorUISettings.isAutoLayoutMovesOtherNodes() |
boolean |
GraphEditorUISettings.isAutoMuteBySelection() |
boolean |
GraphEditorUISettings.isAutoMuteEdgesEnabled() |
boolean |
GeneralDataSettings.isAutoRemoveOutdatedCachedData() |
boolean |
GeneralDataSettings.isAutoSaveLastDisplay() |
boolean |
GeneralDataSettings.isAutoSaveLastImporter() |
boolean |
GraphEditorUISettings.isColorSelectedNodeEdges() |
boolean |
GraphEditorUISettings.isDrawArrowHeads() |
boolean |
GraphEditorUISettings.isDrawImprovedEdges() |
boolean |
GraphEditorUISettings.isDrawLabelsOnHover() |
boolean |
GraphEditorUISettings.isDrawNodeShadows() |
boolean |
GraphEditorUISettings.isDrawOutsideEdges() |
boolean |
BackupSettings.isEnableBackups() |
boolean |
NotificationUISettings.isEnableNotifications() |
boolean |
GraphEditorUISettings.SearchSettings.isEnableSearch() |
boolean |
GeneralDataSettings.isGenerateCachePreviews() |
boolean |
GeneralDataSettings.isGenerateResultPreviews() |
boolean |
ExtensionSettings.isIgnorePreActivationChecks() |
boolean |
GraphEditorUISettings.isLayoutAfterAlgorithmFinder() |
boolean |
GraphEditorUISettings.isLayoutAfterConnect() |
boolean |
GeneralUISettings.isMaximizeWindows() |
boolean |
GeneralUISettings.isNeverAskOnClosingTabs() |
boolean |
GraphEditorUISettings.isNotifyInvalidDragAndDrop() |
boolean |
GeneralUISettings.isOpenDataWindowsAlwaysOnTop() |
boolean |
GeneralUISettings.isOpenUtilityWindowsAlwaysOnTop() |
boolean |
DownloadSettings.isPreferCustomDownloader() |
boolean |
ProjectsSettings.isRestoreTabs() |
boolean |
GraphEditorUISettings.AlgorithmFinderSettings.isSearchFindExistingNodes() |
boolean |
GraphEditorUISettings.SearchSettings.isSearchFindExistingNodes() |
boolean |
GraphEditorUISettings.AlgorithmFinderSettings.isSearchFindNewNodes() |
boolean |
GraphEditorUISettings.SearchSettings.isSearchFindNewNodes() |
boolean |
GeneralUISettings.isShowIntroduction() |
boolean |
NotificationUISettings.isShowNotificationsAfterFirstStart() |
boolean |
GeneralUISettings.isShowParameterSearchBar() |
boolean |
GeneralUISettings.isShowProjectInfo() |
boolean |
NotificationUISettings.isShowRunNotifications() |
boolean |
NotificationUISettings.isShowRunOnlyIfInactive() |
boolean |
TableViewerUISettings.isShowSideBar() |
boolean |
GraphEditorUISettings.isShowToolInfo() |
boolean |
ExtensionSettings.isSilent() |
boolean |
GraphEditorUISettings.isSwitchPanningDirection() |
boolean |
ExtensionSettings.isValidateImageJDependencies() |
boolean |
ExtensionSettings.isValidateNodeTypes() |
boolean |
GeneralUISettings.isValidateOnSave() |
void |
GeneralUISettings.setAddContextActionsToContextMenu(boolean addContextActionsToContextMenu) |
void |
FileChooserSettings.setAddFileExtension(boolean addFileExtension) |
void |
RuntimeSettings.setAllowCache(boolean allowCache) |
void |
GeneralUISettings.setAllowDefaultCollapsedParameters(boolean allowDefaultCollapsedParameters) |
void |
RuntimeSettings.setAllowSkipAlgorithmsWithoutInput(boolean allowSkipAlgorithmsWithoutInput) |
void |
DownloadSettings.DownloadEnvironment.setArguments(JIPipeExpressionParameter arguments) |
void |
GraphEditorUISettings.setAskOnDeleteCompartment(boolean askOnDeleteCompartment) |
void |
GraphEditorUISettings.setAskOnDeleteNode(boolean askOnDeleteNode) |
void |
GraphEditorUISettings.setAskOnDeleteParameter(boolean askOnDeleteParameter) |
void |
GraphEditorUISettings.setAutoHideEdgeDistanceThreshold(int longDistanceEdgeThreshold) |
void |
GraphEditorUISettings.setAutoHideEdgeOverlapThreshold(double autoHideEdgeOverlapThreshold) |
void |
GraphEditorUISettings.setAutoLayout(GraphAutoLayout autoLayout) |
void |
GraphEditorUISettings.setAutoLayoutMovesOtherNodes(boolean autoLayoutMovesOtherNodes) |
void |
GraphEditorUISettings.setAutoMuteBySelection(boolean autoMuteBySelection) |
void |
GraphEditorUISettings.setAutoMuteEdgesEnabled(boolean autoMuteEdgesEnabled) |
void |
GeneralDataSettings.setAutoRemoveOutdatedCachedData(boolean autoRemoveOutdatedCachedData) |
boolean |
BackupSettings.setAutoSaveDelay(int autoSaveDelay) |
void |
GeneralDataSettings.setAutoSaveLastDisplay(boolean autoSaveLastDisplay) |
void |
GeneralDataSettings.setAutoSaveLastImporter(boolean autoSaveLastImporter) |
void |
NotificationUISettings.setBlockedNotifications(StringList blockedNotifications) |
void |
FileChooserSettings.setBookmarks(FileChooserBookmarkList bookmarks) |
void |
GraphEditorUISettings.setColorSelectedNodeEdges(boolean colorSelectedNodeEdges) |
void |
BackupSettings.setCustomBackupPath(OptionalPathParameter customBackupPath) |
void |
GraphEditorUISettings.setDefaultEdgeVisibility(JIPipeGraphEdge.Visibility defaultEdgeVisibility) |
boolean |
RuntimeSettings.setDefaultQuickRunThreads(int defaultTestBenchThreads)
Sets the number of threads for test bench
|
boolean |
RuntimeSettings.setDefaultRunThreads(int defaultRunThreads)
Sets the number of threads
|
void |
GraphEditorUISettings.setDrawArrowHeads(boolean drawArrowHeads) |
void |
GraphEditorUISettings.setDrawImprovedEdges(boolean drawImprovedEdges) |
void |
GraphEditorUISettings.setDrawLabelsOnHover(boolean drawLabelsOnHover) |
void |
GraphEditorUISettings.setDrawNodeShadows(boolean drawNodeShadows) |
void |
GraphEditorUISettings.setDrawOutsideEdges(boolean drawOutsideEdges) |
void |
BackupSettings.setEnableBackups(boolean enableBackups) |
void |
NotificationUISettings.setEnableNotifications(boolean enableNotifications) |
void |
GraphEditorUISettings.SearchSettings.setEnableSearch(boolean enableSearch) |
void |
GeneralDataSettings.setExportedPreviewSizes(IntegerAndIntegerPairParameter.List exportedPreviewSizes) |
void |
DownloadSettings.setExternalDownloaderProcess(DownloadSettings.DownloadEnvironment externalDownloaderProcess) |
void |
FileChooserSettings.setFileChooserType(FileChooserSettings.FileChooserType fileChooserType) |
void |
GeneralDataSettings.setGenerateCachePreviews(boolean generateCachePreviews) |
void |
GeneralDataSettings.setGenerateResultPreviews(boolean generateResultPreviews) |
void |
ExtensionSettings.setIgnorePreActivationChecks(boolean ignorePreActivationChecks) |
void |
FileChooserSettings.setLastDataDirectory(Path lastDataDirectory) |
void |
FileChooserSettings.setLastExternalDirectory(Path lastExternalDirectory) |
void |
FileChooserSettings.setLastParametersDirectory(Path lastParametersDirectory) |
void |
FileChooserSettings.setLastProjectsDirectory(Path lastProjectsDirectory) |
void |
GraphEditorUISettings.setLayoutAfterAlgorithmFinder(boolean layoutAfterAlgorithmFinder) |
void |
GraphEditorUISettings.setLayoutAfterConnect(boolean layoutAfterConnect) |
void |
RuntimeSettings.setLogLimit(int logLimit) |
void |
HistoryJournalSettings.setMaxEntries(int maxEntries) |
void |
GeneralUISettings.setMaximizeWindows(boolean maximizeWindows) |
void |
GeneralDataSettings.setMaxTableColumnSize(int maxTableColumnSize) |
void |
GeneralUISettings.setNeverAskOnClosingTabs(boolean neverAskOnClosingTabs) |
void |
NodeTemplateSettings.setNodeTemplateDownloadRepositories(StringList projectTemplateDownloadRepositories) |
void |
NodeTemplateSettings.setNodeTemplates(JIPipeNodeTemplate.List nodeTemplates) |
void |
GraphEditorUISettings.setNotifyInvalidDragAndDrop(boolean notifyInvalidDragAndDrop) |
void |
GeneralUISettings.setOpenDataWindowsAlwaysOnTop(boolean openDataWindowsAlwaysOnTop) |
void |
GeneralUISettings.setOpenUtilityWindowsAlwaysOnTop(boolean openUtilityWindowsAlwaysOnTop) |
void |
DownloadSettings.setPreferCustomDownloader(boolean preferCustomDownloader) |
void |
GeneralDataSettings.setPreviewSize(int previewSize) |
void |
ProjectsSettings.setProjectTemplate(ProjectsSettings.ProjectTemplateEnum projectTemplate) |
void |
ProjectsSettings.setProjectTemplateDownloadRepositories(StringList projectTemplateDownloadRepositories) |
void |
ProjectsSettings.setRecentJsonExtensionProjects(PathList recentJsonExtensionProjects) |
void |
ProjectsSettings.setRecentProjects(PathList recentProjects) |
void |
ProjectsSettings.setRestoreTabs(boolean restoreTabs) |
void |
GraphEditorUISettings.AlgorithmFinderSettings.setSearchFindExistingNodes(boolean searchFindExistingNodes) |
void |
GraphEditorUISettings.SearchSettings.setSearchFindExistingNodes(boolean searchFindExistingNodes) |
void |
GraphEditorUISettings.AlgorithmFinderSettings.setSearchFindNewNodes(boolean searchFindNewNodes) |
void |
GraphEditorUISettings.SearchSettings.setSearchFindNewNodes(boolean searchFindNewNodes) |
void |
NotificationUISettings.setShowAfterMinRuntime(OptionalIntegerParameter showAfterMinRuntime) |
void |
GeneralUISettings.setShowIntroduction(boolean showIntroduction) |
void |
NotificationUISettings.setShowNotificationsAfterFirstStart(boolean showNotificationsAfterFirstStart) |
void |
GeneralUISettings.setShowParameterSearchBar(boolean showParameterSearchBar) |
void |
GeneralUISettings.setShowProjectInfo(boolean showProjectInfo) |
void |
NotificationUISettings.setShowRunNotifications(boolean showRunNotifications) |
void |
NotificationUISettings.setShowRunOnlyIfInactive(boolean showRunOnlyIfInactive) |
void |
TableViewerUISettings.setShowSideBar(boolean showSideBar) |
void |
GraphEditorUISettings.setShowToolInfo(boolean showToolInfo) |
void |
ExtensionSettings.setSilent(boolean silent) |
void |
GraphEditorUISettings.setSwitchPanningDirection(boolean switchPanningDirection) |
void |
RuntimeSettings.setTempDirectory(OptionalPathParameter tempDirectory) |
void |
GeneralUISettings.setTheme(JIPipeUITheme theme) |
void |
GraphEditorUISettings.setToolInfoDistance(int toolInfoDistance) |
void |
ExtensionSettings.setValidateImageJDependencies(boolean validateImageJDependencies) |
void |
ExtensionSettings.setValidateNodeTypes(boolean validateNodeTypes) |
void |
GeneralUISettings.setValidateOnSave(boolean validateOnSave) |
Modifier and Type | Method and Description |
---|---|
String |
StringDefinitionDataSource.getValue() |
boolean |
ImportJsonAlgorithm.isValidateJson() |
boolean |
ImportXMLAlgorithm.isValidateXml() |
void |
ImportJsonAlgorithm.setValidateJson(boolean validateJson) |
void |
ImportXMLAlgorithm.setValidateXml(boolean validateXml) |
void |
StringDefinitionDataSource.setValue(String value) |
Modifier and Type | Method and Description |
---|---|
JIPipeTextAnnotationMergeMode |
AnnotateWithJsonDataAlgorithm.getAnnotationMergeMode() |
JIPipeExpressionParameter |
AnnotateWithJsonDataAlgorithm.Entry.getAnnotationName() |
JIPipeExpressionParameter |
ExtractJsonDataAsTableAlgorithm.Entry.getColumnName() |
TableColumnNormalization |
ExtractJsonDataAsTableAlgorithm.getColumnNormalization() |
ParameterCollectionList |
ExtractJsonDataAsTableAlgorithm.getEntries() |
ParameterCollectionList |
AnnotateWithJsonDataAlgorithm.getEntries() |
JIPipeExpressionParameter |
ExtractJsonDataAsTableAlgorithm.Entry.getJsonPath() |
JIPipeExpressionParameter |
AnnotateWithJsonDataAlgorithm.Entry.getJsonPath() |
JIPipeExpressionParameter |
ExtractTextFromJsonAlgorithm.getJsonPath() |
void |
AnnotateWithJsonDataAlgorithm.setAnnotationMergeMode(JIPipeTextAnnotationMergeMode annotationMergeMode) |
void |
AnnotateWithJsonDataAlgorithm.Entry.setAnnotationName(JIPipeExpressionParameter annotationName) |
void |
ExtractJsonDataAsTableAlgorithm.Entry.setColumnName(JIPipeExpressionParameter columnName) |
void |
ExtractJsonDataAsTableAlgorithm.setColumnNormalization(TableColumnNormalization columnNormalization) |
void |
ExtractJsonDataAsTableAlgorithm.setEntries(ParameterCollectionList entries) |
void |
AnnotateWithJsonDataAlgorithm.setEntries(ParameterCollectionList entries) |
void |
ExtractJsonDataAsTableAlgorithm.Entry.setJsonPath(JIPipeExpressionParameter jsonPath) |
void |
AnnotateWithJsonDataAlgorithm.Entry.setJsonPath(JIPipeExpressionParameter jsonPath) |
void |
ExtractTextFromJsonAlgorithm.setJsonPath(JIPipeExpressionParameter jsonPath) |
Modifier and Type | Method and Description |
---|---|
JIPipeTextAnnotationMergeMode |
AnnotateWithTextDataAlgorithm.getAnnotationMergeMode() |
JIPipeExpressionParameter |
AnnotateWithTextDataAlgorithm.Entry.getAnnotationName() |
JIPipeExpressionParameter |
TextDataToTableAlgorithm.Entry.getColumnName() |
TableColumnNormalization |
TextDataToTableAlgorithm.getColumnNormalization() |
ParameterCollectionList |
TextDataToTableAlgorithm.getEntries() |
ParameterCollectionList |
AnnotateWithTextDataAlgorithm.getEntries() |
JIPipeExpressionParameter |
TextDataToTableAlgorithm.Entry.getPreprocessor() |
JIPipeExpressionParameter |
AnnotateWithTextDataAlgorithm.Entry.getPreprocessor() |
JIPipeExpressionParameter |
ProcessTextDataAlgorithm.getTextProcessor() |
void |
AnnotateWithTextDataAlgorithm.setAnnotationMergeMode(JIPipeTextAnnotationMergeMode annotationMergeMode) |
void |
AnnotateWithTextDataAlgorithm.Entry.setAnnotationName(JIPipeExpressionParameter annotationName) |
void |
TextDataToTableAlgorithm.Entry.setColumnName(JIPipeExpressionParameter columnName) |
void |
TextDataToTableAlgorithm.setColumnNormalization(TableColumnNormalization columnNormalization) |
void |
TextDataToTableAlgorithm.setEntries(ParameterCollectionList entries) |
void |
AnnotateWithTextDataAlgorithm.setEntries(ParameterCollectionList entries) |
void |
TextDataToTableAlgorithm.Entry.setPreprocessor(JIPipeExpressionParameter preprocessor) |
void |
AnnotateWithTextDataAlgorithm.Entry.setPreprocessor(JIPipeExpressionParameter preprocessor) |
void |
ProcessTextDataAlgorithm.setTextProcessor(JIPipeExpressionParameter textProcessor) |
Modifier and Type | Method and Description |
---|---|
JIPipeTextAnnotationMergeMode |
AnnotateWithXPathDataAlgorithm.getAnnotationMergeMode() |
JIPipeExpressionParameter |
AnnotateWithXPathDataAlgorithm.Entry.getAnnotationName() |
JIPipeExpressionParameter |
ExtractXPathDataAsTableAlgorithm.Entry.getColumnName() |
TableColumnNormalization |
ExtractXPathDataAsTableAlgorithm.getColumnNormalization() |
ParameterCollectionList |
AnnotateWithXPathDataAlgorithm.getEntries() |
ParameterCollectionList |
ExtractXPathDataAsTableAlgorithm.getEntries() |
int |
PrettifyXMLAlgorithm.getIndent() |
StringAndStringPairParameter.List |
AnnotateWithXPathDataAlgorithm.getNamespaceMap() |
StringAndStringPairParameter.List |
ExtractTextFromXMLAlgorithm.getNamespaceMap() |
StringAndStringPairParameter.List |
ExtractXPathDataAsTableAlgorithm.getNamespaceMap() |
JIPipeExpressionParameter |
AnnotateWithXPathDataAlgorithm.Entry.getxPath() |
JIPipeExpressionParameter |
ExtractTextFromXMLAlgorithm.getxPath() |
JIPipeExpressionParameter |
ExtractXPathDataAsTableAlgorithm.Entry.getxPath() |
void |
AnnotateWithXPathDataAlgorithm.setAnnotationMergeMode(JIPipeTextAnnotationMergeMode annotationMergeMode) |
void |
AnnotateWithXPathDataAlgorithm.Entry.setAnnotationName(JIPipeExpressionParameter annotationName) |
void |
ExtractXPathDataAsTableAlgorithm.Entry.setColumnName(JIPipeExpressionParameter columnName) |
void |
ExtractXPathDataAsTableAlgorithm.setColumnNormalization(TableColumnNormalization columnNormalization) |
void |
AnnotateWithXPathDataAlgorithm.setEntries(ParameterCollectionList entries) |
void |
ExtractXPathDataAsTableAlgorithm.setEntries(ParameterCollectionList entries) |
void |
PrettifyXMLAlgorithm.setIndent(int indent) |
void |
AnnotateWithXPathDataAlgorithm.setNamespaceMap(StringAndStringPairParameter.List namespaceMap) |
void |
ExtractTextFromXMLAlgorithm.setNamespaceMap(StringAndStringPairParameter.List namespaceMap) |
void |
ExtractXPathDataAsTableAlgorithm.setNamespaceMap(StringAndStringPairParameter.List namespaceMap) |
void |
AnnotateWithXPathDataAlgorithm.Entry.setxPath(JIPipeExpressionParameter xPath) |
void |
ExtractTextFromXMLAlgorithm.setxPath(JIPipeExpressionParameter xPath) |
void |
ExtractXPathDataAsTableAlgorithm.Entry.setxPath(JIPipeExpressionParameter xPath) |
Modifier and Type | Method and Description |
---|---|
PythonScript |
ModifyAndMergeTablesScript.getCode() |
PythonScript |
TablesFromScript.getCode() |
PythonScript |
ModifyTablesScript.getCode() |
ExpressionTableColumnGeneratorProcessorParameterList |
GenerateColumnAlgorithm.getColumns() |
ExpressionTableColumnGeneratorProcessorParameterList |
GenerateTableFromExpressionAlgorithm.getColumns() |
OptionalIntegerParameter |
GenerateColumnAlgorithm.getEnsureMinNumberOfRows() |
StringQueryExpression |
ModifyTableColumnNamesAlgorithm.getExpression() |
int |
GenerateTableFromExpressionAlgorithm.getGeneratedRows() |
IntegratingTableColumnProcessorParameterList |
IntegrateColumnsAlgorithm.getProcessorParameters() |
JIPipeDynamicParameterCollection |
ModifyAndMergeTablesScript.getScriptParameters() |
JIPipeDynamicParameterCollection |
TablesFromScript.getScriptParameters() |
JIPipeDynamicParameterCollection |
ModifyTablesScript.getScriptParameters() |
ResultsTableDataList |
DefineTablesAlgorithm.getTables() |
boolean |
GenerateColumnAlgorithm.isReplaceIfExists() |
void |
ModifyAndMergeTablesScript.setCode(PythonScript code) |
void |
TablesFromScript.setCode(PythonScript code) |
void |
ModifyTablesScript.setCode(PythonScript code) |
void |
GenerateColumnAlgorithm.setColumns(ExpressionTableColumnGeneratorProcessorParameterList columns) |
void |
GenerateTableFromExpressionAlgorithm.setColumns(ExpressionTableColumnGeneratorProcessorParameterList columns) |
void |
GenerateColumnAlgorithm.setEnsureMinNumberOfRows(OptionalIntegerParameter ensureMinNumberOfRows) |
void |
ModifyTableColumnNamesAlgorithm.setExpression(StringQueryExpression expression) |
boolean |
GenerateTableFromExpressionAlgorithm.setGeneratedRows(int generatedRows) |
void |
IntegrateColumnsAlgorithm.setProcessorParameters(IntegratingTableColumnProcessorParameterList processorParameters) |
void |
GenerateColumnAlgorithm.setReplaceIfExists(boolean replaceIfExists) |
void |
DefineTablesAlgorithm.setTables(ResultsTableDataList tables) |
Modifier and Type | Method and Description |
---|---|
JIPipeTextAnnotationMergeMode |
AnnotateDataWithTableValues.getAnnotationMergeMode() |
JIPipeTextAnnotationMergeMode |
AnnotateByTablePropertiesAlgorithm.getAnnotationMergeStrategy() |
JIPipeExpressionParameter |
AnnotateDataWithTableValues.AnnotationSettings.getAnnotationName() |
StringQueryExpression |
AddAnnotationColumnsAlgorithm.getAnnotationNameFilter() |
String |
AddAnnotationColumnsAlgorithm.getAnnotationPrefix() |
JIPipeExpressionParameter |
AnnotateDataWithTableValues.AnnotationSettings.getAnnotationValue() |
OptionalTextAnnotationNameParameter |
AnnotateByTablePropertiesAlgorithm.getColumnCountAnnotation() |
OptionalTextAnnotationNameParameter |
AnnotateByTablePropertiesAlgorithm.getColumnNamesAnnotation() |
ParameterCollectionList |
AnnotateDataWithTableValues.getGeneratedAnnotations() |
OptionalTextAnnotationNameParameter |
AnnotateByTablePropertiesAlgorithm.getRowCountAnnotation() |
boolean |
ConvertAnnotationTableToAnnotatedTables.isKeepAnnotationColumns() |
void |
AnnotateDataWithTableValues.setAnnotationMergeMode(JIPipeTextAnnotationMergeMode annotationMergeMode) |
void |
AnnotateByTablePropertiesAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy) |
void |
AnnotateDataWithTableValues.AnnotationSettings.setAnnotationName(JIPipeExpressionParameter annotationName) |
void |
AddAnnotationColumnsAlgorithm.setAnnotationNameFilter(StringQueryExpression annotationNameFilter) |
void |
AddAnnotationColumnsAlgorithm.setAnnotationPrefix(String annotationPrefix) |
void |
AnnotateDataWithTableValues.AnnotationSettings.setAnnotationValue(JIPipeExpressionParameter annotationValue) |
void |
AnnotateByTablePropertiesAlgorithm.setColumnCountAnnotation(OptionalTextAnnotationNameParameter columnCountAnnotation) |
void |
AnnotateByTablePropertiesAlgorithm.setColumnNamesAnnotation(OptionalTextAnnotationNameParameter columnNamesAnnotation) |
void |
AnnotateDataWithTableValues.setGeneratedAnnotations(ParameterCollectionList generatedAnnotations) |
void |
ConvertAnnotationTableToAnnotatedTables.setKeepAnnotationColumns(boolean keepAnnotationColumns) |
void |
AnnotateByTablePropertiesAlgorithm.setRowCountAnnotation(OptionalTextAnnotationNameParameter rowCountAnnotation) |
Modifier and Type | Method and Description |
---|---|
JIPipeTextAnnotationMergeMode |
ColumnsToAnnotationsAlgorithm.getAnnotationMergeStrategy() |
TableCellValueQueryExpression |
ColumnsToAnnotationsAlgorithm.getFilter() |
StringQueryExpression |
RemoveColumnAlgorithm.getFilters() |
StringQueryExpression |
ColumnToStringAlgorithm.getFilters() |
StringQueryExpression |
ColumnToNumericAlgorithm.getFilters() |
StringList |
SortTableColumnsAlgorithm.getManualOrder() |
JIPipeExpressionParameter |
RenameTableColumns2Algorithm.RenamingEntry.getNewName() |
ExpressionTableColumnProcessorParameterList |
ApplyExpressionToColumnsAlgorithm.getProcessorParameters() |
ConvertingTableColumnProcessorParameterList |
ConvertColumnsAlgorithm.getProcessorParameters() |
ParameterCollectionList |
RenameTableColumns2Algorithm.getRenamingEntries() |
StringQueryExpressionAndStringPairParameter.List |
RenameSingleColumnsAlgorithm.getRenamingEntries() |
StringQueryExpressionAndStringPairParameter.List |
RenameTableColumnsAlgorithm.getRenamingEntries()
Deprecated.
|
StringQueryExpressionAndStringQueryPairParameter.List |
RenameTableColumnsToAnnotationAlgorithm.getRenamingEntries() |
JIPipeTextAnnotationMergeMode |
ColumnsToAnnotationsAlgorithm.getRowMergingStrategy() |
StringQueryExpression |
RenameTableColumns2Algorithm.RenamingEntry.getSourceColumn() |
boolean |
ApplyExpressionToColumnsAlgorithm.isAppend() |
boolean |
ConvertColumnsAlgorithm.isAppend() |
boolean |
RenameTableColumnsToAnnotationAlgorithm.isIgnoreMissingAnnotations() |
boolean |
RenameTableColumnsToAnnotationAlgorithm.isIgnoreMissingColumns() |
boolean |
ColumnToNumericAlgorithm.isOnlyIfPossible() |
boolean |
SortTableColumnsAlgorithm.isReverseSortOrder() |
boolean |
SortTableColumnsAlgorithm.isUseNaturalSortOrder() |
void |
ColumnsToAnnotationsAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy) |
void |
ApplyExpressionToColumnsAlgorithm.setAppend(boolean append) |
void |
ConvertColumnsAlgorithm.setAppend(boolean append) |
void |
ColumnsToAnnotationsAlgorithm.setFilter(TableCellValueQueryExpression filter) |
void |
RemoveColumnAlgorithm.setFilters(StringQueryExpression filters) |
void |
ColumnToStringAlgorithm.setFilters(StringQueryExpression filters) |
void |
ColumnToNumericAlgorithm.setFilters(StringQueryExpression filters) |
void |
RenameTableColumnsToAnnotationAlgorithm.setIgnoreMissingAnnotations(boolean ignoreMissingAnnotations) |
void |
RenameTableColumnsToAnnotationAlgorithm.setIgnoreMissingColumns(boolean ignoreMissingColumns) |
void |
SortTableColumnsAlgorithm.setManualOrder(StringList manualOrder) |
void |
RenameTableColumns2Algorithm.RenamingEntry.setNewName(JIPipeExpressionParameter newName) |
void |
ColumnToNumericAlgorithm.setOnlyIfPossible(boolean onlyIfPossible) |
void |
ConvertColumnsAlgorithm.setProcessorParameters(ConvertingTableColumnProcessorParameterList processorParameters) |
void |
ApplyExpressionToColumnsAlgorithm.setProcessorParameters(ExpressionTableColumnProcessorParameterList processorParameters) |
void |
RenameTableColumns2Algorithm.setRenamingEntries(ParameterCollectionList renamingEntries) |
void |
RenameSingleColumnsAlgorithm.setRenamingEntries(StringQueryExpressionAndStringPairParameter.List renamingEntries) |
void |
RenameTableColumnsAlgorithm.setRenamingEntries(StringQueryExpressionAndStringPairParameter.List renamingEntries)
Deprecated.
|
void |
RenameTableColumnsToAnnotationAlgorithm.setRenamingEntries(StringQueryExpressionAndStringQueryPairParameter.List renamingEntries) |
void |
SortTableColumnsAlgorithm.setReverseSortOrder(boolean reverseSortOrder) |
void |
ColumnsToAnnotationsAlgorithm.setRowMergingStrategy(JIPipeTextAnnotationMergeMode rowMergingStrategy) |
void |
RenameTableColumns2Algorithm.RenamingEntry.setSourceColumn(StringQueryExpression sourceColumn) |
void |
SortTableColumnsAlgorithm.setUseNaturalSortOrder(boolean useNaturalSortOrder) |
Modifier and Type | Method and Description |
---|---|
JIPipeExpressionParameter |
FilterTableRowsAlgorithm.getFilters() |
JIPipeExpressionParameter |
FilterTablesAlgorithm.getFilters() |
IntegerRange |
SliceTableRowsAlgorithm.getLimit() |
boolean |
FilterTablesAlgorithm.isIncludeAnnotations() |
void |
FilterTableRowsAlgorithm.setFilters(JIPipeExpressionParameter filters) |
void |
FilterTablesAlgorithm.setFilters(JIPipeExpressionParameter filters) |
void |
FilterTablesAlgorithm.setIncludeAnnotations(boolean includeAnnotations) |
void |
SliceTableRowsAlgorithm.setLimit(IntegerRange limit) |
Modifier and Type | Method and Description |
---|---|
StringQueryExpression |
MergeTableColumnsSimpleAlgorithm.getColumnFilter() |
StringQueryExpression |
MergeTableColumnsSupplementAlgorithm.getColumnFilter() |
StringQueryExpression |
MergeTableColumnsSupplementAlgorithm.getReferenceColumns() |
TableColumnNormalization |
MergeTableColumnsSimpleAlgorithm.getRowNormalization() |
TableColumnNormalization |
MergeTableColumnsSupplementAlgorithm.getRowNormalization() |
boolean |
MergeTableColumnsSupplementAlgorithm.isExtendTarget() |
boolean |
MergeTableColumnsSupplementAlgorithm.isSkipEmptyTarget() |
void |
MergeTableColumnsSimpleAlgorithm.setColumnFilter(StringQueryExpression columnFilter) |
void |
MergeTableColumnsSupplementAlgorithm.setColumnFilter(StringQueryExpression columnFilter) |
void |
MergeTableColumnsSupplementAlgorithm.setExtendTarget(boolean extendTarget) |
void |
MergeTableColumnsSupplementAlgorithm.setReferenceColumns(StringQueryExpression referenceColumns) |
void |
MergeTableColumnsSimpleAlgorithm.setRowNormalization(TableColumnNormalization rowNormalization) |
void |
MergeTableColumnsSupplementAlgorithm.setRowNormalization(TableColumnNormalization rowNormalization) |
void |
MergeTableColumnsSupplementAlgorithm.setSkipEmptyTarget(boolean skipEmptyTarget) |
Modifier and Type | Method and Description |
---|---|
JIPipeExpressionParameter |
ApplyExpressionPerRowAlgorithm2.Entry.getColumnName() |
StringQueryExpression |
AddMissingRowsInSeriesAlgorithm.getCountingColumn() |
ExpressionTableColumnGeneratorProcessorParameterList |
AddMissingRowsInSeriesAlgorithm.getDefaultValues() |
ParameterCollectionList |
ApplyExpressionPerRowAlgorithm2.getEntries() |
double |
AddMissingRowsInSeriesAlgorithm.getExpectedStep() |
ExpressionTableColumnGeneratorProcessorParameterList |
ApplyExpressionPerRowAlgorithm.getExpressionList()
Deprecated.
|
OptionalJIPipeExpressionParameter |
AddMissingRowsInSeriesAlgorithm.getMaxCounter() |
OptionalJIPipeExpressionParameter |
AddMissingRowsInSeriesAlgorithm.getMinCounter() |
StringQueryExpressionAndSortOrderPairParameter.List |
SortTableRowsAlgorithm.getSortOrderList() |
JIPipeExpressionParameter |
ApplyExpressionPerRowAlgorithm2.Entry.getValue() |
boolean |
AddMissingRowsInSeriesAlgorithm.isIgnoreEmptyTables() |
boolean |
SortTableRowsAlgorithm.isReverseSortOrder() |
boolean |
SortTableRowsAlgorithm.isUseNaturalSortOrder() |
void |
ApplyExpressionPerRowAlgorithm2.Entry.setColumnName(JIPipeExpressionParameter columnName) |
void |
AddMissingRowsInSeriesAlgorithm.setCountingColumn(StringQueryExpression countingColumn) |
void |
AddMissingRowsInSeriesAlgorithm.setDefaultValues(ExpressionTableColumnGeneratorProcessorParameterList defaultValues) |
void |
ApplyExpressionPerRowAlgorithm2.setEntries(ParameterCollectionList entries) |
boolean |
AddMissingRowsInSeriesAlgorithm.setExpectedStep(double expectedStep) |
void |
ApplyExpressionPerRowAlgorithm.setExpressionList(ExpressionTableColumnGeneratorProcessorParameterList expressionList)
Deprecated.
|
void |
AddMissingRowsInSeriesAlgorithm.setIgnoreEmptyTables(boolean ignoreEmptyTables) |
void |
AddMissingRowsInSeriesAlgorithm.setMaxCounter(OptionalJIPipeExpressionParameter maxCounter) |
void |
AddMissingRowsInSeriesAlgorithm.setMinCounter(OptionalJIPipeExpressionParameter minCounter) |
void |
SortTableRowsAlgorithm.setReverseSortOrder(boolean reverseSortOrder) |
void |
SortTableRowsAlgorithm.setSortOrderList(StringQueryExpressionAndSortOrderPairParameter.List sortOrderList) |
void |
SortTableRowsAlgorithm.setUseNaturalSortOrder(boolean useNaturalSortOrder) |
void |
ApplyExpressionPerRowAlgorithm2.Entry.setValue(JIPipeExpressionParameter value) |
Modifier and Type | Method and Description |
---|---|
StringQueryExpression |
SplitTableIntoColumnsAlgorithm.getColumnFilter() |
StringQueryExpression |
SplitTableByColumnsAlgorithm.getColumns() |
OptionalStringParameter |
SplitTableIntoColumnsAlgorithm.getGeneratedAnnotation() |
boolean |
SplitTableByColumnsAlgorithm.isAddAsAnnotations() |
boolean |
SplitTableIntoRowsAlgorithm.isAnnotateWithValues() |
void |
SplitTableByColumnsAlgorithm.setAddAsAnnotations(boolean addAsAnnotations) |
void |
SplitTableIntoRowsAlgorithm.setAnnotateWithValues(boolean annotateWithValues) |
void |
SplitTableIntoColumnsAlgorithm.setColumnFilter(StringQueryExpression columnFilter) |
void |
SplitTableByColumnsAlgorithm.setColumns(StringQueryExpression columns) |
void |
SplitTableIntoColumnsAlgorithm.setGeneratedAnnotation(OptionalStringParameter generatedAnnotation) |
Modifier and Type | Method and Description |
---|---|
JIPipeExpressionParameter |
TableToHistogramAlgorithm.getAccumulationFunction() |
StringQueryExpression |
UnMeltTableAlgorithm.getCategoryColumns() |
TableColumnNormalization |
UnMeltTableAlgorithm.getColumnNormalization() |
TableColumnSourceExpressionParameter |
TableToHistogramAlgorithm.getInputColumn() |
JIPipeExpressionParameter |
ApplyExpressionPerLabelAlgorithm.getIntegrationFunction() |
TableColumnSourceExpressionParameter |
ApplyExpressionPerLabelAlgorithm.getKeyColumn() |
JIPipeExpressionParameter |
UnMeltTableAlgorithm.getNewColumnName() |
JIPipeExpressionParameter |
TableToHistogramAlgorithm.getNumBins() |
OptionalStringParameter |
MeltTableAlgorithm.getOutputCategoryColumnName() |
JIPipeExpressionParameter |
TableToHistogramAlgorithm.getOutputColumnBinCount() |
JIPipeExpressionParameter |
TableToHistogramAlgorithm.getOutputColumnBinMax() |
JIPipeExpressionParameter |
TableToHistogramAlgorithm.getOutputColumnBinMin() |
String |
ApplyExpressionPerLabelAlgorithm.getOutputKeyColumn() |
String |
ApplyExpressionPerLabelAlgorithm.getOutputValueColumn() |
String |
MeltTableAlgorithm.getOutputValueColumnName() |
StringQueryExpression |
UnMeltTableAlgorithm.getValueColumn() |
TableColumnSourceExpressionParameter |
ApplyExpressionPerLabelAlgorithm.getValueColumn() |
StringQueryExpression |
MeltTableAlgorithm.getValueColumns() |
JIPipeExpressionParameter |
TableToHistogramAlgorithm.getValueFilter() |
boolean |
ApplyExpressionPerLabelAlgorithm.isCumulative() |
boolean |
TableToHistogramAlgorithm.isCumulative() |
boolean |
ApplyExpressionPerLabelAlgorithm.isNormalize() |
boolean |
TableToHistogramAlgorithm.isNormalize() |
void |
TableToHistogramAlgorithm.setAccumulationFunction(JIPipeExpressionParameter accumulationFunction) |
void |
UnMeltTableAlgorithm.setCategoryColumns(StringQueryExpression categoryColumns) |
void |
UnMeltTableAlgorithm.setColumnNormalization(TableColumnNormalization columnNormalization) |
void |
ApplyExpressionPerLabelAlgorithm.setCumulative(boolean cumulative) |
void |
TableToHistogramAlgorithm.setCumulative(boolean cumulative) |
void |
TableToHistogramAlgorithm.setInputColumn(TableColumnSourceExpressionParameter inputColumn) |
void |
ApplyExpressionPerLabelAlgorithm.setIntegrationFunction(JIPipeExpressionParameter integrationFunction) |
void |
ApplyExpressionPerLabelAlgorithm.setKeyColumn(TableColumnSourceExpressionParameter keyColumn) |
void |
UnMeltTableAlgorithm.setNewColumnName(JIPipeExpressionParameter newColumnName) |
void |
ApplyExpressionPerLabelAlgorithm.setNormalize(boolean normalize) |
void |
TableToHistogramAlgorithm.setNormalize(boolean normalize) |
void |
TableToHistogramAlgorithm.setNumBins(JIPipeExpressionParameter numBins) |
void |
MeltTableAlgorithm.setOutputCategoryColumnName(OptionalStringParameter outputCategoryColumnName) |
void |
TableToHistogramAlgorithm.setOutputColumnBinCount(JIPipeExpressionParameter outputColumnBinCount) |
void |
TableToHistogramAlgorithm.setOutputColumnBinMax(JIPipeExpressionParameter outputColumnBinMax) |
void |
TableToHistogramAlgorithm.setOutputColumnBinMin(JIPipeExpressionParameter outputColumnBinMin) |
void |
ApplyExpressionPerLabelAlgorithm.setOutputKeyColumn(String outputKeyColumn) |
void |
ApplyExpressionPerLabelAlgorithm.setOutputValueColumn(String outputValueColumn) |
void |
MeltTableAlgorithm.setOutputValueColumnName(String outputValueColumnName) |
void |
UnMeltTableAlgorithm.setValueColumn(StringQueryExpression valueColumn) |
void |
ApplyExpressionPerLabelAlgorithm.setValueColumn(TableColumnSourceExpressionParameter valueColumn) |
void |
MeltTableAlgorithm.setValueColumns(StringQueryExpression valueColumns) |
void |
TableToHistogramAlgorithm.setValueFilter(JIPipeExpressionParameter valueFilter) |
Modifier and Type | Method and Description |
---|---|
ColumnContentType |
TableColumnGeneratorParameter.getGeneratedType() |
JIPipeDataInfoRef |
TableColumnGeneratorParameter.getGeneratorType() |
void |
TableColumnGeneratorParameter.setGeneratedType(ColumnContentType generatedType) |
void |
TableColumnGeneratorParameter.setGeneratorType(JIPipeDataInfoRef generatorType) |
Modifier and Type | Method and Description |
---|---|
JIPipeDataAnnotationMergeMode |
ImportJIPipeSlotFolderAlgorithm.getDataAnnotationMergeMode() |
SortOrder |
SortRowsByAnnotationsAlgorithm.getDefaultSortOrder() |
ParameterCollectionList |
SortRowsByExpressionAlgorithm.getEntries() |
JIPipeExpressionParameter |
RunExpressionAlgorithm.getExpression() |
IntegerRange |
SelectDataTableRowsAlgorithm.getLimit() |
JIPipeTextAnnotationMergeMode |
UsePlaceholderForMissingDataAlgorithm.getPlaceholderAnnotationMergeStrategy() |
IntegerRange |
IterationStepSlicer.getSliceRange() |
IntegerRange |
DataSlicer.getSliceRange() |
SortOrder |
SortRowsByExpressionAlgorithm.SortEntry.getSortOrder() |
StringQueryExpressionAndSortOrderPairParameter.List |
SortRowsByAnnotationsAlgorithm.getSortOrderList() |
JIPipeTextAnnotationMergeMode |
ImportJIPipeSlotFolderAlgorithm.getTextAnnotationMergeMode() |
int |
SleepAlgorithm.getTimeout() |
JIPipeExpressionParameter |
SortRowsByExpressionAlgorithm.SortEntry.getValue() |
OptionalTextAnnotationNameParameter |
RunExpressionAlgorithm.getWriteToAnnotation() |
JIPipeTextAnnotationMergeMode |
RunExpressionAlgorithm.getWriteToAnnotationMergeStrategy() |
boolean |
ToDataStringAlgorithm.isDetailedDataString() |
boolean |
ImportJIPipeSlotFolderAlgorithm.isIgnoreImportedDataAnnotations() |
boolean |
ImportJIPipeSlotFolderAlgorithm.isIgnoreImportedTextAnnotations() |
boolean |
ImportJIPipeSlotFolderAlgorithm.isIgnoreInputDataAnnotations() |
boolean |
ImportJIPipeSlotFolderAlgorithm.isIgnoreInputTextAnnotations() |
void |
ImportJIPipeSlotFolderAlgorithm.setDataAnnotationMergeMode(JIPipeDataAnnotationMergeMode dataAnnotationMergeMode) |
void |
SortRowsByAnnotationsAlgorithm.setDefaultSortOrder(SortOrder defaultSortOrder) |
void |
ToDataStringAlgorithm.setDetailedDataString(boolean detailedDataString) |
void |
SortRowsByExpressionAlgorithm.setEntries(ParameterCollectionList entries) |
void |
RunExpressionAlgorithm.setExpression(JIPipeExpressionParameter expression) |
void |
ImportJIPipeSlotFolderAlgorithm.setIgnoreImportedDataAnnotations(boolean ignoreImportedDataAnnotations) |
void |
ImportJIPipeSlotFolderAlgorithm.setIgnoreImportedTextAnnotations(boolean ignoreImportedTextAnnotations) |
void |
ImportJIPipeSlotFolderAlgorithm.setIgnoreInputDataAnnotations(boolean ignoreInputDataAnnotations) |
void |
ImportJIPipeSlotFolderAlgorithm.setIgnoreInputTextAnnotations(boolean ignoreInputTextAnnotations) |
void |
SelectDataTableRowsAlgorithm.setLimit(IntegerRange limit) |
void |
UsePlaceholderForMissingDataAlgorithm.setPlaceholderAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode placeholderAnnotationMergeStrategy) |
void |
IterationStepSlicer.setSliceRange(IntegerRange sliceRange) |
void |
DataSlicer.setSliceRange(IntegerRange sliceRange) |
void |
SortRowsByExpressionAlgorithm.SortEntry.setSortOrder(SortOrder sortOrder) |
void |
SortRowsByAnnotationsAlgorithm.setSortOrderList(StringQueryExpressionAndSortOrderPairParameter.List sortOrderList) |
void |
ImportJIPipeSlotFolderAlgorithm.setTextAnnotationMergeMode(JIPipeTextAnnotationMergeMode textAnnotationMergeMode) |
void |
SleepAlgorithm.setTimeout(int timeout) |
void |
SortRowsByExpressionAlgorithm.SortEntry.setValue(JIPipeExpressionParameter value) |
void |
RunExpressionAlgorithm.setWriteToAnnotation(OptionalTextAnnotationNameParameter writeToAnnotation) |
void |
RunExpressionAlgorithm.setWriteToAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode writeToAnnotationMergeStrategy) |
Modifier and Type | Method and Description |
---|---|
OutputSlotMapParameterCollection |
DistributeDataRandomlyByCountAlgorithm.getCounts() |
OutputSlotMapParameterCollection |
DistributeDataRandomlyByPercentageAlgorithm.getWeights() |
Modifier and Type | Method and Description |
---|---|
String |
CrasherAlgorithm.getErrorExplanation() |
String |
CrasherAlgorithm.getErrorSolution() |
String |
CrasherAlgorithm.getErrorTitle() |
JIPipeExpressionParameter |
SingleIterationStepCheckerAlgorithm.getFilter() |
JIPipeExpressionParameter |
MultiIterationStepCheckerAlgorithm.getFilter() |
OptionalTextAnnotationNameParameter |
SingleIterationStepCheckerAlgorithm.getIterationStepIndexAnnotation() |
OptionalTextAnnotationNameParameter |
MultiIterationStepCheckerAlgorithm.getIterationStepIndexAnnotation() |
boolean |
SingleIterationStepCheckerAlgorithm.isKeepOriginalAnnotations() |
boolean |
MultiIterationStepCheckerAlgorithm.isKeepOriginalAnnotations() |
void |
CrasherAlgorithm.setErrorExplanation(String errorExplanation) |
void |
CrasherAlgorithm.setErrorSolution(String errorSolution) |
void |
CrasherAlgorithm.setErrorTitle(String errorTitle) |
void |
SingleIterationStepCheckerAlgorithm.setFilter(JIPipeExpressionParameter filter) |
void |
MultiIterationStepCheckerAlgorithm.setFilter(JIPipeExpressionParameter filter) |
void |
SingleIterationStepCheckerAlgorithm.setIterationStepIndexAnnotation(OptionalTextAnnotationNameParameter iterationStepIndexAnnotation) |
void |
MultiIterationStepCheckerAlgorithm.setIterationStepIndexAnnotation(OptionalTextAnnotationNameParameter iterationStepIndexAnnotation) |
void |
SingleIterationStepCheckerAlgorithm.setKeepOriginalAnnotations(boolean keepOriginalAnnotations) |
void |
MultiIterationStepCheckerAlgorithm.setKeepOriginalAnnotations(boolean keepOriginalAnnotations) |
Modifier and Type | Method and Description |
---|---|
String |
GetJIPipeSlotFolderAlgorithm.getCompartmentId() |
String |
GetJIPipeSlotFolderAlgorithm.getNodeId() |
InputSlotMapParameterCollection |
PathsToJIPipeProjectParametersAlgorithm.getParameterKeyAssignments() |
Path |
RunJIPipeProjectAlgorithm.getProjectFile() |
String |
GetJIPipeSlotFolderAlgorithm.getSlotName() |
OptionalIntegerParameter |
RunJIPipeProjectAlgorithm.getThreads() |
boolean |
RunJIPipeProjectAlgorithm.isIgnoreValidation() |
void |
GetJIPipeSlotFolderAlgorithm.setCompartmentId(String compartmentId) |
void |
RunJIPipeProjectAlgorithm.setIgnoreValidation(boolean ignoreValidation) |
void |
GetJIPipeSlotFolderAlgorithm.setNodeId(String nodeId) |
void |
RunJIPipeProjectAlgorithm.setProjectFile(Path projectFile) |
void |
GetJIPipeSlotFolderAlgorithm.setSlotName(String slotName) |
void |
RunJIPipeProjectAlgorithm.setThreads(OptionalIntegerParameter threads) |
Modifier and Type | Method and Description |
---|---|
OptionalJIPipeExpressionParameter |
RunProcessMergingAlgorithm.getOverrideArguments() |
OptionalJIPipeExpressionParameter |
RunProcessIteratingAlgorithm.getOverrideArguments() |
ProcessEnvironment |
RunProcessMergingAlgorithm.getProcessEnvironment() |
ProcessEnvironment |
RunProcessIteratingAlgorithm.getProcessEnvironment() |
boolean |
RunProcessMergingAlgorithm.isCleanUpAfterwards() |
boolean |
RunProcessIteratingAlgorithm.isCleanUpAfterwards() |
boolean |
RunProcessMergingAlgorithm.isOutputOutputFolder() |
boolean |
RunProcessIteratingAlgorithm.isOutputOutputFolder() |
void |
RunProcessMergingAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards) |
void |
RunProcessIteratingAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards) |
void |
RunProcessMergingAlgorithm.setOutputOutputFolder(boolean outputOutputFolder) |
void |
RunProcessIteratingAlgorithm.setOutputOutputFolder(boolean outputOutputFolder) |
void |
RunProcessMergingAlgorithm.setOverrideArguments(OptionalJIPipeExpressionParameter overrideArguments) |
void |
RunProcessIteratingAlgorithm.setOverrideArguments(OptionalJIPipeExpressionParameter overrideArguments) |
void |
RunProcessMergingAlgorithm.setProcessEnvironment(ProcessEnvironment processEnvironment) |
void |
RunProcessIteratingAlgorithm.setProcessEnvironment(ProcessEnvironment processEnvironment) |
Modifier and Type | Method and Description |
---|---|
boolean |
JIPipeProjectReportUI.ReportSettings.isAddAcknowledgements() |
boolean |
JIPipeProjectReportUI.ReportSettings.isAddAuthors() |
boolean |
JIPipeProjectReportUI.ReportSettings.isAddCitation() |
boolean |
JIPipeProjectReportUI.ReportSettings.isAddDependencies() |
boolean |
JIPipeProjectReportUI.ReportSettings.isAddDependencyCitations() |
boolean |
JIPipeProjectReportUI.ReportSettings.isAddDescription() |
boolean |
JIPipeProjectReportUI.ReportSettings.isAddLicence() |
boolean |
JIPipeProjectReportUI.ReportSettings.isAddListOfUsedNodes() |
boolean |
JIPipeProjectReportUI.ReportSettings.isAddPipelineTextDescription() |
boolean |
JIPipeProjectReportUI.ReportSettings.isAddSummary() |
boolean |
JIPipeProjectReportUI.ReportSettings.isAddTitle() |
boolean |
JIPipeProjectReportUI.ReportSettings.isAddWebsite() |
void |
JIPipeProjectReportUI.ReportSettings.setAddAcknowledgements(boolean addAcknowledgements) |
void |
JIPipeProjectReportUI.ReportSettings.setAddAuthors(boolean addAuthors) |
void |
JIPipeProjectReportUI.ReportSettings.setAddCitation(boolean addCitation) |
void |
JIPipeProjectReportUI.ReportSettings.setAddDependencies(boolean addDependencies) |
void |
JIPipeProjectReportUI.ReportSettings.setAddDependencyCitations(boolean addDependencyCitations) |
void |
JIPipeProjectReportUI.ReportSettings.setAddDescription(boolean addDescription) |
void |
JIPipeProjectReportUI.ReportSettings.setAddLicence(boolean addLicence) |
void |
JIPipeProjectReportUI.ReportSettings.setAddListOfUsedNodes(boolean addListOfUsedNodes) |
void |
JIPipeProjectReportUI.ReportSettings.setAddPipelineTextDescription(boolean addPipelineTextDescription) |
void |
JIPipeProjectReportUI.ReportSettings.setAddSummary(boolean addSummary) |
void |
JIPipeProjectReportUI.ReportSettings.setAddTitle(boolean addTitle) |
void |
JIPipeProjectReportUI.ReportSettings.setAddWebsite(boolean addWebsite) |
Modifier and Type | Method and Description |
---|---|
JIPipeDataByMetadataExporter |
JIPipeDataTableToFilesByMetadataExporterRun.Settings.getExporter() |
boolean |
JIPipeDataTableToFilesByMetadataExporterRun.Settings.isRememberSettings() |
boolean |
JIPipeDataTableToFilesByMetadataExporterRun.Settings.isSplitBySlotName() |
void |
JIPipeDataTableToFilesByMetadataExporterRun.Settings.setRememberSettings(boolean rememberSettings) |
void |
JIPipeDataTableToFilesByMetadataExporterRun.Settings.setSplitBySlotName(boolean splitBySlotName) |
Modifier and Type | Method and Description |
---|---|
HTMLText |
AddParameterDialog.Settings.getDescription() |
String |
AddParameterDialog.Settings.getId() |
String |
AddParameterDialog.Settings.getName() |
void |
AddParameterDialog.Settings.setDescription(HTMLText description) |
void |
AddParameterDialog.Settings.setId(String id) |
void |
AddParameterDialog.Settings.setName(String name) |
Modifier and Type | Method and Description |
---|---|
String |
DocumentTabPane.DocumentTab.getTitle() |
void |
DocumentTabPane.DocumentTab.setTitle(String title) |
Modifier and Type | Method and Description |
---|---|
HTMLText |
DynamicParameterEditorDialog.ParameterEntry.getDescription() |
String |
DynamicParameterEditorDialog.ParameterEntry.getKey() |
String |
DynamicParameterEditorDialog.ParameterEntry.getName() |
JIPipeParameterTypeInfoRef |
DynamicParameterEditorDialog.ParameterEntry.getType() |
void |
DynamicParameterEditorDialog.ParameterEntry.setDescription(HTMLText description) |
void |
DynamicParameterEditorDialog.ParameterEntry.setKey(String key) |
void |
DynamicParameterEditorDialog.ParameterEntry.setName(String name) |
void |
DynamicParameterEditorDialog.ParameterEntry.setType(JIPipeParameterTypeInfoRef type) |
Modifier and Type | Method and Description |
---|---|
JIPipeDynamicParameterCollection |
JIPipePlotSeriesBuilder.getColumnAssignments() |
PlotData |
PlotEditor.getCurrentPlot() |
String |
JIPipePlotSeriesBuilder.getName() |
JIPipeDataInfoRef |
PlotEditor.getPlotType() |
boolean |
JIPipePlotSeriesBuilder.isEnabled() |
void |
JIPipePlotSeriesBuilder.setEnabled(boolean enabled) |
void |
JIPipePlotSeriesBuilder.setName(String name) |
void |
PlotEditor.setPlotType(JIPipeDataInfoRef plotType) |
Modifier and Type | Method and Description |
---|---|
int |
QuickRunSettings.getNumThreads() |
Path |
QuickRunSettings.getOutputPath() |
boolean |
QuickRunSettings.isExcludeSelected() |
boolean |
QuickRunSettings.isLoadFromCache() |
boolean |
QuickRunSettings.isSaveToDisk() |
boolean |
QuickRunSettings.isStoreIntermediateResults() |
boolean |
QuickRunSettings.isStoreToCache() |
void |
QuickRunSettings.setExcludeSelected(boolean excludeSelected) |
void |
QuickRunSettings.setLoadFromCache(boolean loadFromCache) |
void |
QuickRunSettings.setNumThreads(int numThreads) |
void |
QuickRunSettings.setOutputPath(Path outputPath) |
void |
QuickRunSettings.setSaveToDisk(boolean saveToDisk) |
void |
QuickRunSettings.setStoreIntermediateResults(boolean storeIntermediateResults) |
void |
QuickRunSettings.setStoreToCache(boolean storeToCache) |
Modifier and Type | Method and Description |
---|---|
GraphNodeParameterReferenceGroupCollection |
JIPipeProjectInfoParameters.getExportedParameters() |
void |
JIPipeProjectInfoParameters.setExportedParameters(GraphNodeParameterReferenceGroupCollection parameters) |
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