public class UploadOMEROImageAlgorithm extends JIPipeIteratingAlgorithm
JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.BaseDirectoryChangedEventEmitter, JIPipeGraphNode.BaseDirectoryChangedEventListener, JIPipeGraphNode.NodeSlotsChangedEvent, JIPipeGraphNode.NodeSlotsChangedEventEmitter, JIPipeGraphNode.NodeSlotsChangedEventListener, JIPipeGraphNode.Serializer
JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterChangedEventEmitter, JIPipeParameterCollection.ParameterChangedEventListener, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEventEmitter, JIPipeParameterCollection.ParameterStructureChangedEventListener, JIPipeParameterCollection.ParameterUIChangedEvent, JIPipeParameterCollection.ParameterUIChangedEventEmitter, JIPipeParameterCollection.ParameterUIChangedEventListener
SLOT_PARAMETERS
Constructor and Description |
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UploadOMEROImageAlgorithm(JIPipeNodeInfo info) |
UploadOMEROImageAlgorithm(UploadOMEROImageAlgorithm other) |
Modifier and Type | Method and Description |
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DataExportExpressionParameter |
getFileNameGenerator() |
AnnotationsToOMEROKeyValuePairExporter |
getKeyValuePairExporter() |
OptionalOMEROCredentialsEnvironment |
getOverrideCredentials() |
AnnotationsToOMEROTagExporter |
getTagExporter() |
void |
reportValidity(JIPipeValidationReportContext reportContext,
JIPipeValidationReport report)
Generates a validity report
|
protected void |
runIteration(JIPipeSingleIterationStep iterationStep,
JIPipeIterationContext iterationContext,
JIPipeGraphNodeRunContext runContext,
JIPipeProgressInfo progressInfo)
Runs code on one data row
|
void |
setFileNameGenerator(DataExportExpressionParameter fileNameGenerator) |
void |
setOverrideCredentials(OptionalOMEROCredentialsEnvironment overrideCredentials) |
boolean |
supportsParallelization()
Indicates to the algorithm base implementation if parallelization is supported.
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createUIInputSlotIconDescriptionMenuItems, generateDataBatchesGenerationResult, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getParallelizationBatchSize, isParameterUIVisible, isParameterUIVisible, runParameterSet, runPassThrough
getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, getUIInputSlotIcon, getUIInputSlotIconBaseDimensions, onParameterChanged, run
canAutoPassThrough, canPassThrough, functionallyEquals, getDefaultCustomExpressionVariables, getRuntimePartition, isEnabled, isEnableDefaultCustomExpressionVariables, isPassThrough, isPostprocessor, isPreprocessor, isSkipped, loadExample, onDeserialized, runPassThrough, setEnabled, setPassThrough, setRuntimePartition, setSkipped
archiveTo, canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, emitNodeSlotsChangedEvent, fromJson, getAliasIdInParentGraph, getBaseDirectory, getBaseDirectoryChangedEventEmitter, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getCustomName, getDependencies, getDisplayName, getExternalEnvironments, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getNodeSlotsChangedEventEmitter, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDataDirs, getProjectDirectory, getRuntimeProject, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getTextDescription, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isUiLocked, isVisibleIn, onSlotConfigurationChanged, renderInputSlots, renderOutputSlots, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setRuntimeProject, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, setUiLocked, toggleSlot, toJson, updateGraphNodeSlots
getParameterChangedEventEmitter, getParameterStructureChangedEventEmitter, getParameterUIChangedEventEmitter, onParameterStructureChanged, onParameterUIChanged, registerSubParameter, registerSubParameters
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
generateDataBatchesDryRun
installUIOverrideParameterEditor, installUIParameterOptions
emitParameterChangedEvent, emitParameterStructureChangedEvent, emitParameterUIChangedEvent, getContextActions, getParameter, getParameterAccess, getParameterChangedEventEmitter, getParameterStructureChangedEventEmitter, getParameterUIChangedEventEmitter, setParameter
generateValidityReport
onParameterUIChanged
onParameterStructureChanged
public UploadOMEROImageAlgorithm(JIPipeNodeInfo info)
public UploadOMEROImageAlgorithm(UploadOMEROImageAlgorithm other)
protected void runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
JIPipeIteratingAlgorithm
runIteration
in class JIPipeIteratingAlgorithm
iterationStep
- The data interfaceiterationContext
- The iteration contextrunContext
- the run contextprogressInfo
- the progress info from the runpublic OptionalOMEROCredentialsEnvironment getOverrideCredentials()
public void setOverrideCredentials(OptionalOMEROCredentialsEnvironment overrideCredentials)
public DataExportExpressionParameter getFileNameGenerator()
public void setFileNameGenerator(DataExportExpressionParameter fileNameGenerator)
public AnnotationsToOMEROKeyValuePairExporter getKeyValuePairExporter()
public AnnotationsToOMEROTagExporter getTagExporter()
public boolean supportsParallelization()
JIPipeParallelizedAlgorithm
supportsParallelization
in interface JIPipeParallelizedAlgorithm
supportsParallelization
in class JIPipeIteratingAlgorithm
public void reportValidity(JIPipeValidationReportContext reportContext, JIPipeValidationReport report)
JIPipeValidatable
reportValidity
in interface JIPipeValidatable
reportValidity
in class JIPipeAlgorithm
reportContext
- the report contextreport
- the report to be added toCopyright © 2020–2024 Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute (HKI). All rights reserved.