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A

a0 - Variable in class org.hkijena.jipipe.ui.grapheditor.general.connections.RectangularLine
 
a1 - Variable in class org.hkijena.jipipe.ui.grapheditor.general.connections.RectangularLine
 
AbsoluteColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a abs(x) function
AbsoluteColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.AbsoluteColumnOperation
 
absoluteToJIPipeUserDirRelative(Path) - Static method in class org.hkijena.jipipe.utils.PathUtils
 
AbstractExpressionParameter - Class in org.hkijena.jipipe.extensions.expressions
A parameter that contains an expression.
AbstractExpressionParameter() - Constructor for class org.hkijena.jipipe.extensions.expressions.AbstractExpressionParameter
 
AbstractExpressionParameter(String) - Constructor for class org.hkijena.jipipe.extensions.expressions.AbstractExpressionParameter
 
AbstractExpressionParameter(AbstractExpressionParameter) - Constructor for class org.hkijena.jipipe.extensions.expressions.AbstractExpressionParameter
 
AbstractJIPipeEvent - Class in org.hkijena.jipipe.api.events
 
AbstractJIPipeEvent(Object) - Constructor for class org.hkijena.jipipe.api.events.AbstractJIPipeEvent
 
AbstractJIPipeParameterCollection - Class in org.hkijena.jipipe.api.parameters
JIPipeParameterCollection that implements the event emitters
AbstractJIPipeParameterCollection() - Constructor for class org.hkijena.jipipe.api.parameters.AbstractJIPipeParameterCollection
 
AbstractJIPipeRunnable - Class in org.hkijena.jipipe.api
Abstract base class for implementing JIPipeRunnable
AbstractJIPipeRunnable() - Constructor for class org.hkijena.jipipe.api.AbstractJIPipeRunnable
 
AbstractPathImageJDataExporterUI - Class in org.hkijena.jipipe.api.compat.ui
Exporter UI that changes the activation state and the name (based on a path)
AbstractPathImageJDataExporterUI(JIPipeWorkbench, ImageJDataExportOperation) - Constructor for class org.hkijena.jipipe.api.compat.ui.AbstractPathImageJDataExporterUI
 
AbstractPathImageJDataImporterUI - Class in org.hkijena.jipipe.api.compat.ui
Importer UI that represents the name as path
AbstractPathImageJDataImporterUI(JIPipeWorkbench, ImageJDataImportOperation) - Constructor for class org.hkijena.jipipe.api.compat.ui.AbstractPathImageJDataImporterUI
 
AbstractTextBoxAnnotationGraphNode - Class in org.hkijena.jipipe.extensions.graphannotation.nodes
 
AbstractTextBoxAnnotationGraphNode(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.graphannotation.nodes.AbstractTextBoxAnnotationGraphNode
 
AbstractTextBoxAnnotationGraphNode(AbstractTextBoxAnnotationGraphNode) - Constructor for class org.hkijena.jipipe.extensions.graphannotation.nodes.AbstractTextBoxAnnotationGraphNode
 
AbstractTextBoxAnnotationGraphNode.TextLocationParameters - Class in org.hkijena.jipipe.extensions.graphannotation.nodes
 
AbstractTextBoxAnnotationGraphNode.TextRenderParameters - Class in org.hkijena.jipipe.extensions.graphannotation.nodes
 
accept(JIPipeWorkbench) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDefaultParameterCollectionContextAction
 
accept(Object) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDummyParameterCollection
 
accept(JIPipeWorkbench) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterCollectionContextAction
 
accept(JIPipeGraphCanvasUI) - Method in class org.hkijena.jipipe.ui.grapheditor.general.layout.MSTGraphAutoLayoutMethod
 
accept(JIPipeGraphCanvasUI) - Method in class org.hkijena.jipipe.ui.grapheditor.general.layout.SugiyamaGraphAutoLayoutMethod
 
accept(T, U, V) - Method in interface org.hkijena.jipipe.utils.TriConsumer
Performs this operation on the given arguments.
accepts(JIPipeData) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Returns true if the slot can carry the provided data.
accepts(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Returns true if the slot can carry the provided data.
acceptsTrivially(JIPipeData) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Returns true if the slot can carry the provided data.
acceptsTrivially(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Returns true if the slot can carry the provided data.
accessEquals(JIPipeParameterAccess) - Method in class org.hkijena.jipipe.extensions.parameters.api.scripts.ScriptParameterEditorUI.ExternalEditor
 
AccumulateFunction - Class in org.hkijena.jipipe.extensions.expressions.functions.statistics
 
AccumulateFunction() - Constructor for class org.hkijena.jipipe.extensions.expressions.functions.statistics.AccumulateFunction
 
Action(Component, int, Insets) - Constructor for class org.hkijena.jipipe.ui.components.ribbon.Ribbon.Action
 
Action(List<Component>, int, Insets) - Constructor for class org.hkijena.jipipe.ui.components.ribbon.Ribbon.Action
 
actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.extensions.ilastik.RunIlastikMenuExtension
 
actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.extensions.parameters.ExpressionTesterJIPipeMenuExtension
 
actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.extensions.parameters.ParameterTesterJIPipeMenuExtension
 
actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.extensions.plots.NewPlotJIPipeMenuExtension
 
actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.extensions.tables.NewTableJIPipeMenuExtension
 
actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.ui.components.AdvancedFileChooser
 
actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.ui.components.ColorChooserButton
 
actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.ui.components.html.HTMLEditor.StrikeThroughAction
Toggles the strikethrough attribute.
actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.ui.components.html.HTMLEditor.SubscriptAction
Toggles the strikethrough attribute.
actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.ui.components.html.HTMLEditor.SuperscriptAction
Toggles the strikethrough attribute.
actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
activate() - Method in class org.hkijena.jipipe.api.grapheditortool.JIPipeConnectGraphEditorTool
 
activate() - Method in class org.hkijena.jipipe.api.grapheditortool.JIPipeCropViewGraphEditorTool
 
activate() - Method in class org.hkijena.jipipe.api.grapheditortool.JIPipeDefaultGraphEditorTool
 
activate() - Method in interface org.hkijena.jipipe.api.grapheditortool.JIPipeGraphEditorTool
 
activate() - Method in class org.hkijena.jipipe.api.grapheditortool.JIPipeMoveNodesGraphEditorTool
 
activate() - Method in class org.hkijena.jipipe.api.grapheditortool.JIPipeRewireGraphEditorTool
 
activate() - Method in class org.hkijena.jipipe.api.nodes.annotation.JIPipeAnnotationGraphNodeTool
 
activate() - Method in class org.hkijena.jipipe.extensions.imageviewer.ImageViewerPanel3D
 
ActivateAndApplyUpdateSiteRun - Class in org.hkijena.jipipe.ui.extensions
 
ActivateAndApplyUpdateSiteRun(JIPipeModernPluginManager, List<UpdateSite>) - Constructor for class org.hkijena.jipipe.ui.extensions.ActivateAndApplyUpdateSiteRun
 
ActivateDependenciesConfirmationDialog - Class in org.hkijena.jipipe.ui.extensions
 
ActivateDependenciesConfirmationDialog(Component, JIPipeModernPluginManager, JIPipePlugin, Set<JIPipeDependency>, Set<JIPipeImageJUpdateSiteDependency>) - Constructor for class org.hkijena.jipipe.ui.extensions.ActivateDependenciesConfirmationDialog
 
activateExtension(JIPipePlugin) - Method in class org.hkijena.jipipe.ui.extensions.JIPipeModernPluginManager
 
ActivateUpdateSiteRun - Class in org.hkijena.jipipe.ui.ijupdater
 
ActivateUpdateSiteRun(FilesCollection, List<UpdateSite>) - Constructor for class org.hkijena.jipipe.ui.ijupdater.ActivateUpdateSiteRun
 
activeAreas - Variable in class org.hkijena.jipipe.ui.grapheditor.general.nodeui.JIPipeGraphNodeUI
 
add(JIPipeDataTableMetadataRow) - Method in class org.hkijena.jipipe.api.data.serialization.JIPipeDataTableMetadata
 
add(int, JIPipeDataTableMetadataRow) - Method in class org.hkijena.jipipe.api.data.serialization.JIPipeDataTableMetadata
 
add(JIPipeProject, JIPipeDataSlot, JIPipeDataTableMetadata) - Method in class org.hkijena.jipipe.api.data.serialization.JIPipeMergedDataTableMetadata
add(String, int) - Method in class org.hkijena.jipipe.api.nodes.database.WeightedTokens
Adds a text to tokenize
add(JIPipeParameterCollection, String, JIPipeParameterTree.Node) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
Adds a new JIPipeParameterCollection into this collection.
add() - Method in class org.hkijena.jipipe.api.runtimepartitioning.JIPipeRuntimePartitionConfiguration
Adds a new runtime partition.
add(JIPipeRuntimePartition) - Method in class org.hkijena.jipipe.api.runtimepartitioning.JIPipeRuntimePartitionConfiguration
 
add(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageSliceIndex
Adds the value to all components
add(Scene3DNode) - Method in class org.hkijena.jipipe.extensions.scene3d.datatypes.Scene3DData
 
add(int, Scene3DNode) - Method in class org.hkijena.jipipe.extensions.scene3d.datatypes.Scene3DData
 
add(Ribbon.Action) - Method in class org.hkijena.jipipe.ui.components.ribbon.Ribbon.Band
 
add(Ribbon.Band) - Method in class org.hkijena.jipipe.ui.components.ribbon.Ribbon.Task
 
add(Component) - Method in class org.hkijena.jipipe.ui.components.VerticalToolBar
 
add(JIPipeProject, Store<JIPipeDataTable>) - Method in class org.hkijena.jipipe.ui.datatable.JIPipeExtendedMultiDataTableModel
add(Component) - Method in class org.hkijena.jipipe.utils.MenuManager
 
add(Point) - Method in class org.hkijena.jipipe.utils.PointRange
Adds the point's x and y coordinates to all points
add(List<Double>, List<Double>) - Static method in class org.hkijena.jipipe.utils.VectorUtils
 
addActionListener(ActionListener) - Method in class org.hkijena.jipipe.ui.components.FancyPasswordField
Adds a listener for when the search text changes
addActionListener(ActionListener) - Method in class org.hkijena.jipipe.ui.components.FancyTextField
Adds a listener for when the search text changes
addActionListener(ActionListener) - Method in class org.hkijena.jipipe.ui.components.PathEditor
Adds a listener for when the path property changes
addActionListener(Runnable) - Method in class org.hkijena.jipipe.ui.components.ribbon.CheckBoxAction
 
addActionListener(ActionListener) - Method in class org.hkijena.jipipe.ui.components.ribbon.CheckBoxAction
 
addActionListener(Runnable) - Method in class org.hkijena.jipipe.ui.components.ribbon.LargeButtonAction
 
addActionListener(ActionListener) - Method in class org.hkijena.jipipe.ui.components.ribbon.LargeButtonAction
 
addActionListener(Runnable) - Method in class org.hkijena.jipipe.ui.components.ribbon.LargeToggleButtonAction
 
addActionListener(ActionListener) - Method in class org.hkijena.jipipe.ui.components.ribbon.LargeToggleButtonAction
 
addActionListener(Runnable) - Method in class org.hkijena.jipipe.ui.components.ribbon.SmallButtonAction
 
addActionListener(ActionListener) - Method in class org.hkijena.jipipe.ui.components.ribbon.SmallButtonAction
 
addActionListener(Runnable) - Method in class org.hkijena.jipipe.ui.components.ribbon.SmallToggleButtonAction
 
addActionListener(ActionListener) - Method in class org.hkijena.jipipe.ui.components.ribbon.SmallToggleButtonAction
 
addActionListener(ActionListener) - Method in class org.hkijena.jipipe.ui.components.search.SearchTextField
Adds a listener for when the search text changes
addAdaptiveParameter(String) - Method in class org.hkijena.jipipe.api.nodes.JIPipeAdaptiveParameterSettings
 
addAfterLastOfType(Component, Class<? extends Component>) - Method in class org.hkijena.jipipe.utils.MenuManager
 
addAlgorithm(JsonNodeInfo) - Method in class org.hkijena.jipipe.JIPipeJsonPlugin
Adds a new node type of specified type
AddAlgorithmSlotPanel - Class in org.hkijena.jipipe.ui.components
UI that adds slots to an algorithm
AddAlgorithmSlotPanel(JIPipeGraphNode, JIPipeSlotType, JIPipeHistoryJournal) - Constructor for class org.hkijena.jipipe.ui.components.AddAlgorithmSlotPanel
 
addAll(Collection<? extends JIPipeDataTableMetadataRow>) - Method in class org.hkijena.jipipe.api.data.serialization.JIPipeDataTableMetadata
 
addAll(int, Collection<? extends JIPipeDataTableMetadataRow>) - Method in class org.hkijena.jipipe.api.data.serialization.JIPipeDataTableMetadata
 
addAll(Collection<? extends Scene3DNode>) - Method in class org.hkijena.jipipe.extensions.scene3d.datatypes.Scene3DData
 
addAll(int, Collection<? extends Scene3DNode>) - Method in class org.hkijena.jipipe.extensions.scene3d.datatypes.Scene3DData
 
addAll(Ribbon.Action...) - Method in class org.hkijena.jipipe.ui.components.ribbon.Ribbon.Band
 
addAll(Ribbon.Band...) - Method in class org.hkijena.jipipe.ui.components.ribbon.Ribbon.Task
 
addAndModifyRow() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Adds a new row and returns a ResultsTableData.RowBuilder for setting values conveniently
addAnnotation(Annotation) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder
 
addAnnotationColumn(String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData
Adds a new column that contains annotation data and returns its index- If the column already exists, its index is returned.
AddAnnotationColumnsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.nodes.annotations
Algorithm that integrates columns
AddAnnotationColumnsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.annotations.AddAnnotationColumnsAlgorithm
Creates a new instance
AddAnnotationColumnsAlgorithm(AddAnnotationColumnsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.annotations.AddAnnotationColumnsAlgorithm
Creates a copy
addAnnotationIfEnabled(Collection<JIPipeDataAnnotation>, JIPipeData) - Method in class org.hkijena.jipipe.extensions.parameters.library.primitives.optional.OptionalDataAnnotationNameParameter
Adds the annotation with given value of the parameter is enabled
addAnnotationIfEnabled(Collection<JIPipeTextAnnotation>, String) - Method in class org.hkijena.jipipe.extensions.parameters.library.primitives.optional.OptionalTextAnnotationNameParameter
Adds the annotation with given value of the parameter is enabled
addAnnotationIfEnabled(Collection<JIPipeTextAnnotation>, String[]) - Method in class org.hkijena.jipipe.extensions.parameters.library.primitives.optional.OptionalTextAnnotationNameParameter
Adds the annotation with given value of the parameter is enabled
addAnnotationIfEnabled(Collection<JIPipeTextAnnotation>, Collection<String>) - Method in class org.hkijena.jipipe.extensions.parameters.library.primitives.optional.OptionalTextAnnotationNameParameter
Adds the annotation with given value of the parameter is enabled
addAnnotationToAllData(JIPipeTextAnnotation, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Deprecated.
use addTextAnnotationToAllData()
addBalloonToComponent(AbstractButton, String) - Static method in class org.hkijena.jipipe.utils.UIUtils
 
addBand(String) - Method in class org.hkijena.jipipe.ui.components.ribbon.Ribbon.Task
 
addBand(String, String) - Method in class org.hkijena.jipipe.ui.components.ribbon.Ribbon.Task
 
AddBookmarkNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.general.contextmenu
 
AddBookmarkNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.general.contextmenu.AddBookmarkNodeUIContextAction
 
addBorder(ImagePlus, int, int, int, int, BorderMode, double, Color, JIPipeProgressInfo) - Static method in class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.transform.AddBorder2DAlgorithm
 
AddBorder2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.transform
 
AddBorder2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.transform.AddBorder2DAlgorithm
 
AddBorder2DAlgorithm(AddBorder2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.transform.AddBorder2DAlgorithm
 
addButton(String, Icon, Consumer<SearchTextField>) - Method in class org.hkijena.jipipe.ui.components.search.SearchTextField
 
addButton(String, ActionListener) - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
addCategories(String...) - Method in class org.hkijena.jipipe.api.JIPipeMetadata
 
addCategory(String) - Method in class org.hkijena.jipipe.api.JIPipeMetadata
 
addChild(String, JIPipeParameterTree.Node) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node
 
addChild(Scene3DNode) - Method in class org.hkijena.jipipe.extensions.scene3d.model.Scene3DGroupNode
 
addChoosableFileFilter(FileNameExtensionFilter) - Method in class org.hkijena.jipipe.ui.components.AdvancedFileChooser
 
addColumn() - Method in class org.hkijena.jipipe.extensions.parameters.api.matrix.Matrix2D
Adds a new column
addColumn(ParameterTable.ParameterColumn, Object) - Method in class org.hkijena.jipipe.extensions.parameters.library.table.ParameterTable
Adds a new column to the table
addColumn(String, boolean) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Adds a column with the given name.
addColumn(String, TableColumn, boolean) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Adds a column with the given name.
addColumn(Component) - Method in class org.hkijena.jipipe.ui.components.FormPanel.GroupHeaderPanel
Adds a component on the right hand side
addColumns(Collection<ResultsTableData>, boolean, TableColumnNormalization) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Adds columns from another table
addCompartment(String) - Method in class org.hkijena.jipipe.api.JIPipeProject
Adds a new project compartment
addCompartment(JIPipeProjectCompartment, UUID) - Method in class org.hkijena.jipipe.api.JIPipeProject
Adds an existing compartment instance
addContent(GraphNodeParameterReference) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup
Adds a new element into the group.
addContent(Collection<GraphNodeParameterReference>) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup
Adds multiple elements.
addCustomEntriesToTable(UIDefaults) - Method in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
Add this theme's custom entries to the defaults table.
addCustomEntriesToTable(UIDefaults) - Method in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
Add this theme's custom entries to the defaults table.
addData(JIPipeData, List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode, JIPipeDataContext, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Adds a data row
addData(JIPipeData, List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Deprecated.
use the overload with the context
addData(JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Deprecated.
use the overload with the context
addData(JIPipeData, JIPipeDataContext, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Adds a data row
addData(JIPipeDataTable, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Deprecated.
use addDataFromSlot
addData(JIPipeDataItemStore, List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode, JIPipeDataContext, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Adds data as virtual data reference
addData(JIPipeDataItemStore, List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Deprecated.
use the overload with the context
addData(JIPipeDataItemStore, List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode, List<JIPipeDataAnnotation>, JIPipeDataAnnotationMergeMode, JIPipeDataContext, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Adds data as virtual data reference
addData(JIPipeDataItemStore, List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode, List<JIPipeDataAnnotation>, JIPipeDataAnnotationMergeMode, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Deprecated.
use the overload with the context
addData(JIPipeData, List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode, List<JIPipeDataAnnotation>, JIPipeDataAnnotationMergeMode, JIPipeDataContext, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Adds data as virtual data reference
addData(JIPipeData, List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode, List<JIPipeDataAnnotation>, JIPipeDataAnnotationMergeMode, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Deprecated.
use the overload with the context
addDataFromSlot(JIPipeDataTable, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Copies the source slot into this slot.
addDataFromTable(JIPipeDataTable, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Merges the data from the source table into the current one
addEdgeIgnoreLoops(FilamentVertex, FilamentVertex) - Method in class org.hkijena.jipipe.extensions.ijfilaments.datatypes.Filaments3DData
 
addEdgeIgnoreLoops(FilamentVertex, FilamentVertex, FilamentEdge) - Method in class org.hkijena.jipipe.extensions.ijfilaments.datatypes.Filaments3DData
 
addEmptySlot(JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.nodes.iterationstep.JIPipeMultiIterationStep
Ensures that the specified slot is registered to the data batch
addEntry(JIPipeValidationReportEntry) - Method in class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI
Adds an entry to the UI
addEscapeListener(JDialog) - Static method in class org.hkijena.jipipe.utils.UIUtils
Makes a JDialog close when the escape key is hit
addFillerGridBagComponent(Container, int, int) - Static method in class org.hkijena.jipipe.utils.UIUtils
Equivalent of Box.verticalGlue() for GridBagLayout
addFirst(Component) - Method in class org.hkijena.jipipe.utils.MenuManager
 
addFromAnnotations(Class<? extends JIPipeGraphNode>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Adds slots from parameter annotations (with autoCreate)
addFromPopulation(Objects3DPopulation, int, int) - Method in class org.hkijena.jipipe.extensions.ij3d.datatypes.ROI3DListData
Adds ROI from a population
addFromTable(JIPipeDataTable, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Deprecated.
use addDataFromTable instead
addFromTemplate(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.extensions.parameters.library.collections.ParameterCollectionList
 
addGraph(JIPipeGraph, Set<JIPipeGraphNode>) - Method in class org.hkijena.jipipe.api.run.JIPipeGraphRunDataFlowGraph
 
addGraph(JIPipeGraph, Set<JIPipeGraphNode>) - Method in class org.hkijena.jipipe.api.run.JIPipeGraphRunGCGraph
 
addGraph(JIPipeGraph) - Method in class org.hkijena.jipipe.api.run.JIPipeGraphRunPartitionGraph
 
addGroupHeader(String, Icon) - Method in class org.hkijena.jipipe.ui.components.FormPanel
Adds a group header
addGroupHeader(String, String, Icon) - Method in class org.hkijena.jipipe.ui.components.FormPanel
Adds a group header
addGroups(Collection<GraphNodeParameterReferenceGroup>) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroupCollection
Adds multiple groups
addInheritanceConversion(JIPipeDataInfo, JIPipeDataInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo.Deserializer.Builder
Deprecated.
addInheritanceConversion(Class<? extends JIPipeData>, Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo.Deserializer.Builder
Deprecated.
addInputData(JIPipeDataSlot, int) - Method in class org.hkijena.jipipe.api.nodes.iterationstep.JIPipeMultiIterationStep
Adds the data row of a given slot.
addInputData(JIPipeDataSlot, Collection<Integer>) - Method in class org.hkijena.jipipe.api.nodes.iterationstep.JIPipeMultiIterationStep
Adds the data row of a given slot.
addInputSlot(String, String, Class<? extends JIPipeData>, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Adds a new input slot
addInputSlot(String, String, Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Adds an input slot
addInputSlot(String, String, Class<? extends JIPipeData>, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Adds an input slot
addInputSlot(AddJIPipeInputSlot) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Adds an input slot from an annotation
addInputSlot(String, String, Class<? extends JIPipeData>, boolean, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Adds an input slot
addInputSlotForModuleItem(ModuleItem<?>, Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.extensions.imagej2.ImageJ2OpNodeInfo
 
addItem(Object) - Method in class org.hkijena.jipipe.ui.ijupdater.IJProgressAdapter
 
addItem(Object) - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeProgressAdapter
 
addItem(Object) - Method in class org.hkijena.jipipe.ui.ijupdater.ProgressAdapter
 
AdditionFunctionOperator - Class in org.hkijena.jipipe.extensions.expressions.operators
 
AdditionFunctionOperator(int) - Constructor for class org.hkijena.jipipe.extensions.expressions.operators.AdditionFunctionOperator
 
AddJIPipeCitation - Annotation Type in org.hkijena.jipipe.api
Interface to add citations to nodes/data types
AddJIPipeCitations - Annotation Type in org.hkijena.jipipe.api
AddJIPipeDocumentationDescription - Annotation Type in org.hkijena.jipipe.api
Allows to separate the description part of a SetJIPipeDocumentation into multiple items.
AddJIPipeDocumentationDescriptions - Annotation Type in org.hkijena.jipipe.api
Container for multiple AddJIPipeDocumentationDescription
AddJIPipeInputSlot - Annotation Type in org.hkijena.jipipe.api.nodes
Annotates an JIPipeGraphNode with an input slot.
AddJIPipeInputSlots - Annotation Type in org.hkijena.jipipe.api.nodes
Required to allow multiple AddJIPipeInputSlot
AddJIPipeNodeAlias - Annotation Type in org.hkijena.jipipe.api.nodes
Annotates a node with an additional menu location
AddJIPipeNodeAliases - Annotation Type in org.hkijena.jipipe.api.nodes
 
AddJIPipeOutputSlot - Annotation Type in org.hkijena.jipipe.api.nodes
Annotates an JIPipeGraphNode with an output slot.
AddJIPipeOutputSlots - Annotation Type in org.hkijena.jipipe.api.nodes
Required to allow multiple AddJIPipeOutputSlot
addLink(String, Icon, File) - Method in class org.hkijena.jipipe.ui.components.AdvancedFileChooser
 
addLinkCategory(String) - Method in class org.hkijena.jipipe.ui.components.AdvancedFileChooser
 
addMaxProgress(int) - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo
 
addMergedDataAnnotation(JIPipeDataAnnotation, JIPipeDataAnnotationMergeMode) - Method in class org.hkijena.jipipe.api.nodes.iterationstep.JIPipeMultiIterationStep
Adds an annotation to the annotation list
addMergedDataAnnotation(JIPipeDataAnnotation, JIPipeDataAnnotationMergeMode) - Method in class org.hkijena.jipipe.api.nodes.iterationstep.JIPipeSingleIterationStep
Adds an annotation to the annotation list
addMergedDataAnnotations(Collection<JIPipeDataAnnotation>, JIPipeDataAnnotationMergeMode) - Method in class org.hkijena.jipipe.api.nodes.iterationstep.JIPipeMultiIterationStep
Adds annotations to the annotation list
addMergedDataAnnotations(Collection<JIPipeDataAnnotation>, JIPipeDataAnnotationMergeMode) - Method in class org.hkijena.jipipe.api.nodes.iterationstep.JIPipeSingleIterationStep
Adds annotations to the annotation list
addMergedTextAnnotation(JIPipeTextAnnotation, JIPipeTextAnnotationMergeMode) - Method in class org.hkijena.jipipe.api.nodes.iterationstep.JIPipeMultiIterationStep
Adds an annotation to the annotation list
addMergedTextAnnotation(JIPipeTextAnnotation, JIPipeTextAnnotationMergeMode) - Method in class org.hkijena.jipipe.api.nodes.iterationstep.JIPipeSingleIterationStep
Adds an annotation to the annotation list
addMergedTextAnnotations(Map<String, String>, JIPipeTextAnnotationMergeMode) - Method in class org.hkijena.jipipe.api.nodes.iterationstep.JIPipeMultiIterationStep
Adds annotations to the merged annotation storage of this interface.
addMergedTextAnnotations(List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode) - Method in class org.hkijena.jipipe.api.nodes.iterationstep.JIPipeMultiIterationStep
Adds annotations to the merged annotation storage of this interface.
addMergedTextAnnotations(Collection<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode) - Method in class org.hkijena.jipipe.api.nodes.iterationstep.JIPipeSingleIterationStep
Adds annotations to the merged annotation storage of this interface.
addMessage(MessagePanel.MessageType, String, boolean, boolean, Component...) - Method in class org.hkijena.jipipe.ui.components.MessagePanel
 
addMessage(MessagePanel.MessageType, String, boolean, boolean, List<Component>) - Method in class org.hkijena.jipipe.ui.components.MessagePanel
 
AddMissingRowsInSeriesAlgorithm - Class in org.hkijena.jipipe.extensions.tables.nodes.rows
 
AddMissingRowsInSeriesAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.rows.AddMissingRowsInSeriesAlgorithm
 
AddMissingRowsInSeriesAlgorithm(AddMissingRowsInSeriesAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.rows.AddMissingRowsInSeriesAlgorithm
 
AddMissingRowsInSeriesAlgorithm.CounterVariablesInfo - Class in org.hkijena.jipipe.extensions.tables.nodes.rows
 
AddMissingRowsInSeriesAlgorithm.DefaultValuesVariablesInfo - Class in org.hkijena.jipipe.extensions.tables.nodes.rows
 
addNameToColumnIdentifiers(DefaultTableModel, String) - Static method in class org.hkijena.jipipe.utils.TableUtils
Adds a name to columns
AddNewCompartmentUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.general.contextmenu
 
AddNewCompartmentUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.general.contextmenu.AddNewCompartmentUIContextAction
 
addNewGroup() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroupCollection
Adds a new empty group
addNewInstance() - Method in class org.hkijena.jipipe.extensions.ijtrackmate.parameters.SpotFeatureFilterParameter.List
 
addNewInstance() - Method in class org.hkijena.jipipe.extensions.ijtrackmate.parameters.SpotFeaturePenaltyParameter.List
 
addNewInstance() - Method in class org.hkijena.jipipe.extensions.ijtrackmate.parameters.TrackFeatureFilterParameter.List
 
addNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.api.collections.ListParameter
Adds a new instance of the content class Override this method for types that cannot be default-constructed
addNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.library.collections.ParameterCollectionList
 
addNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.library.colors.ColorListParameter
 
addNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.library.filesystem.PathList
 
addNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.library.primitives.list.DoubleList
 
addNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.library.primitives.list.FloatList
 
addNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.library.primitives.list.IntegerList
 
addNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.library.primitives.list.LongList
 
addNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.library.primitives.list.StringList
 
AddNewNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.general.contextmenu
 
AddNewNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.general.contextmenu.AddNewNodeUIContextAction
 
AddNoise2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.noise
Wrapper around ImageProcessor
AddNoise2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.noise.AddNoise2DAlgorithm
Instantiates a new node type.
AddNoise2DAlgorithm(AddNoise2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.noise.AddNoise2DAlgorithm
Instantiates a new node type.
addNumericColumn(String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Adds a string column with the given name.
addOutputData(String, JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.iterationstep.JIPipeMultiIterationStep
Writes output data into the provided slot Please note that annotations should be set up till this point
addOutputData(String, JIPipeDataItemStore, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.iterationstep.JIPipeMultiIterationStep
Writes output data into the provided slot Please note that annotations should be set up till this point
addOutputData(String, JIPipeData, List<JIPipeTextAnnotation>, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.iterationstep.JIPipeMultiIterationStep
Writes output data into the provided slot Please note that annotations should be set up till this point
addOutputData(String, JIPipeDataItemStore, List<JIPipeTextAnnotation>, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.iterationstep.JIPipeMultiIterationStep
Writes output data into the provided slot Please note that annotations should be set up till this point
addOutputData(String, JIPipeData, List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.iterationstep.JIPipeMultiIterationStep
Writes output data into the provided slot Please note that annotations should be set up till this point
addOutputData(String, JIPipeDataItemStore, JIPipeTextAnnotationMergeMode, List<JIPipeTextAnnotation>, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.iterationstep.JIPipeMultiIterationStep
Writes output data into the provided slot Please note that annotations should be set up till this point
addOutputData(JIPipeOutputDataSlot, JIPipeDataItemStore, List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode, List<JIPipeDataAnnotation>, JIPipeDataAnnotationMergeMode, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.iterationstep.JIPipeMultiIterationStep
 
addOutputData(JIPipeOutputDataSlot, JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.iterationstep.JIPipeMultiIterationStep
Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
addOutputData(JIPipeOutputDataSlot, JIPipeDataItemStore, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.iterationstep.JIPipeMultiIterationStep
Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
addOutputData(String, JIPipeData, List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode, List<JIPipeDataAnnotation>, JIPipeDataAnnotationMergeMode, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.iterationstep.JIPipeMultiIterationStep
Writes output data into the provided slot Please note that annotations should be set up till this point
addOutputData(JIPipeOutputDataSlot, JIPipeData, List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode, List<JIPipeDataAnnotation>, JIPipeDataAnnotationMergeMode, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.iterationstep.JIPipeMultiIterationStep
Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
addOutputData(JIPipeOutputDataSlot, JIPipeData, List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.iterationstep.JIPipeMultiIterationStep
Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
addOutputData(JIPipeOutputDataSlot, JIPipeDataItemStore, List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.iterationstep.JIPipeMultiIterationStep
Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
addOutputData(String, JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.iterationstep.JIPipeSingleIterationStep
Writes output data into the provided slot Please note that annotations should be set up till this point
addOutputData(String, JIPipeData, List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.iterationstep.JIPipeSingleIterationStep
Writes output data into the provided slot Please note that annotations should be set up till this point
addOutputData(String, JIPipeData, List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode, List<JIPipeDataAnnotation>, JIPipeDataAnnotationMergeMode, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.iterationstep.JIPipeSingleIterationStep
Writes output data into the provided slot Please note that annotations should be set up till this point
addOutputData(JIPipeOutputDataSlot, JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.iterationstep.JIPipeSingleIterationStep
Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
addOutputData(JIPipeOutputDataSlot, JIPipeData, List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.iterationstep.JIPipeSingleIterationStep
Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
addOutputData(JIPipeOutputDataSlot, JIPipeData, List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode, List<JIPipeDataAnnotation>, JIPipeDataAnnotationMergeMode, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.iterationstep.JIPipeSingleIterationStep
Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
addOutputData(JIPipeOutputDataSlot, JIPipeDataItemStore, List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode, List<JIPipeDataAnnotation>, JIPipeDataAnnotationMergeMode, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.iterationstep.JIPipeSingleIterationStep
Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
addOutputSlot(String, String, Class<? extends JIPipeData>, String, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Deprecated.
Inherited slot is non-functional
addOutputSlot(String, String, Class<? extends JIPipeData>, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Adds a new output slot
addOutputSlot(String, String, Class<? extends JIPipeData>, String) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Deprecated.
Slot inheritance is non-functional
addOutputSlot(String, String, Class<? extends JIPipeData>, String, Map<Class<? extends JIPipeData>, Class<? extends JIPipeData>>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Deprecated.
Slot inheritance is non-functional
addOutputSlot(String, String, Class<? extends JIPipeData>, String, Map<Class<? extends JIPipeData>, Class<? extends JIPipeData>>, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Deprecated.
Slot inheritance is non-functional
addOutputSlot(String, String, Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Adds an output slot
addOutputSlot(AddJIPipeOutputSlot) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Adds an output slot from an annotation
addOutputSlot(String, String, Class<? extends JIPipeData>, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Adds an output slot
addOutputSlotForModuleItem(ModuleItem<?>, Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.extensions.imagej2.ImageJ2OpNodeInfo
 
addOverlay(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData
 
addOverlay(Object) - Method in class org.hkijena.jipipe.extensions.imageviewer.JIPipeImageViewer
 
addParameter(JIPipeMutableParameterAccess) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
Adds a new parameter.
addParameter(String, Class<?>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
Adds a new parameter
addParameter(String, Class<?>, String, String, Annotation...) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
 
AddParameterDialog - Class in org.hkijena.jipipe.ui.components
UI that adds slots to an algorithm
AddParameterDialog(JIPipeWorkbench, JIPipeDynamicParameterCollection) - Constructor for class org.hkijena.jipipe.ui.components.AddParameterDialog
 
AddParameterDialog.Settings - Class in org.hkijena.jipipe.ui.components
 
addParameterForModuleItem(String, String, String, Class<?>, ModuleItem<?>) - Method in class org.hkijena.jipipe.extensions.imagej2.ImageJ2OpNode
 
addPoint(int, int, float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.HoughLines
Adds a single point to the hough transform.
addPoints(ImageProcessor, boolean, float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.HoughLines
Adds points from an image.
addPopupMenuToButton(AbstractButton) - Static method in class org.hkijena.jipipe.utils.UIUtils
Adds a popup menu to a button.
addPopupMenuToButton(AbstractButton, JPopupMenu) - Static method in class org.hkijena.jipipe.utils.UIUtils
Adds an existing popup menu to a button
addPostprocessorCode(StringBuilder, List<JIPipeOutputDataSlot>) - Static method in class org.hkijena.jipipe.extensions.python.PythonUtils
 
addPredecessor(JIPipeDataContext) - Method in class org.hkijena.jipipe.api.data.context.JIPipeMutableDataContext
 
addPreset(Class<?>, JIPipeEnvironment) - Method in class org.hkijena.jipipe.api.registries.JIPipeExternalEnvironmentRegistry
Adds a new preset into the storage of the environment class
addProgress(int) - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo
 
addRecentJsonExtension(Path) - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings
Adds a JSON extension file to the list of recent JSON extensions
addRecentProject(Path) - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings
Adds a project file to the list of recent projects
addReloadablePopupMenuToButton(AbstractButton, JPopupMenu, Runnable) - Static method in class org.hkijena.jipipe.utils.UIUtils
Adds an existing popup menu to a button Adds a function that is run before the popup is shown
addReloadableRightClickPopupMenuToButton(AbstractButton, JPopupMenu, Runnable) - Static method in class org.hkijena.jipipe.utils.UIUtils
Adds an existing popup menu to a button Adds a function that is run before the popup is shown
addRightClickPopupMenuToButton(AbstractButton) - Static method in class org.hkijena.jipipe.utils.UIUtils
Adds an existing popup menu to a button Adds a function that is run before the popup is shown
addRightClickPopupMenuToButton(AbstractButton, JPopupMenu) - Static method in class org.hkijena.jipipe.utils.UIUtils
Adds an existing popup menu to a button Adds a function that is run before the popup is shown
addRightClickPopupMenuToComponent(Component) - Static method in class org.hkijena.jipipe.utils.UIUtils
Adds an existing popup menu to a button Adds a function that is run before the popup is shown
AddROI3DToManagerOperation - Class in org.hkijena.jipipe.extensions.ij3d.display
 
AddROI3DToManagerOperation() - Constructor for class org.hkijena.jipipe.extensions.ij3d.display.AddROI3DToManagerOperation
 
AddRoiListsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.roi.merge
Wrapper around RoiManager
AddRoiListsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.roi.merge.AddRoiListsAlgorithm
Instantiates a new node type.
AddRoiListsAlgorithm(AddRoiListsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.roi.merge.AddRoiListsAlgorithm
Instantiates a new node type.
AddROIToActiveJIPipeImageViewerDataDisplay - Class in org.hkijena.jipipe.extensions.imagejdatatypes.display
 
AddROIToActiveJIPipeImageViewerDataDisplay() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.display.AddROIToActiveJIPipeImageViewerDataDisplay
 
AddROIToJIPipeImageViewerDataDisplay - Class in org.hkijena.jipipe.extensions.imagejdatatypes.display
 
AddROIToJIPipeImageViewerDataDisplay() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.display.AddROIToJIPipeImageViewerDataDisplay
 
addRow() - Method in class org.hkijena.jipipe.extensions.parameters.api.matrix.Matrix2D
Adds a new row
addRow(List<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.library.table.ParameterTable
Adds a row with raw values.
addRow() - Method in class org.hkijena.jipipe.extensions.parameters.library.table.ParameterTable
Creates a new empty row
addRow(Map<String, Object>) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Adds a new row and writes the provided values into the table
addRow() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Adds a new row
addRowBuilder() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Deprecated.
Use addAndModifyRow() instead
addRows(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Adds multiple rows
addRows(ResultsTableData) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Merges another results table into this one
AddSaltAndPepperNoise2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.noise
Wrapper around ImageProcessor
AddSaltAndPepperNoise2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.noise.AddSaltAndPepperNoise2DAlgorithm
Instantiates a new node type.
AddSaltAndPepperNoise2DAlgorithm(AddSaltAndPepperNoise2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.noise.AddSaltAndPepperNoise2DAlgorithm
Instantiates a new node type.
addSelectionContextPanel(ROIManagerPlugin3DSelectionContextPanel) - Method in class org.hkijena.jipipe.extensions.ij3d.imageviewer.ROIManagerPlugin3D
 
addSelectionContextPanel(FilamentsManagerPlugin2D.SelectionContextPanel) - Method in class org.hkijena.jipipe.extensions.ijfilaments.display.FilamentsManagerPlugin2D
 
addSelectionContextPanel(FilamentsManagerPlugin3D.SelectionContextPanel) - Method in class org.hkijena.jipipe.extensions.ijfilaments.display.FilamentsManagerPlugin3D
 
addSelectionContextPanel(SpotsManagerPlugin2D.SelectionContextPanel) - Method in class org.hkijena.jipipe.extensions.ijtrackmate.display.spots.SpotsManagerPlugin2D
 
addSelectionContextPanel(TracksManagerPlugin2D.SelectionContextPanel) - Method in class org.hkijena.jipipe.extensions.ijtrackmate.display.tracks.TracksManagerPlugin2D
 
addSelectionContextPanel(ROIManagerPlugin2DSelectionContextPanel) - Method in class org.hkijena.jipipe.extensions.imageviewer.plugins2d.roimanager.ROIManagerPlugin2D
 
addSeparator() - Method in class org.hkijena.jipipe.ui.components.VerticalToolBar
 
addSeparatorIfNeeded(JPopupMenu) - Static method in class org.hkijena.jipipe.utils.UIUtils
Adds a separator if there is at least one component in the menu and the last item is not a separator
addSeparatorIfNeeded(JMenu) - Static method in class org.hkijena.jipipe.utils.UIUtils
Adds a separator if there is at least one component in the menu and the last item is not a separator
addSeries(PlotDataSeries) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
Adds a new series into this plot
addSeries() - Method in class org.hkijena.jipipe.ui.plotbuilder.PlotEditor
Adds a new series
addSlide(Component, String) - Method in class org.hkijena.jipipe.utils.ui.DotSlideshow
 
addSlot(String, JIPipeDataSlotInfo, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Adds a slots
addSlot(AddJIPipeInputSlot, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Adds an input slot from an annotation
addSlot(AddJIPipeOutputSlot, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Adds an input slot from an annotation
addSlot(JIPipeDataSlotInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Adds a slot
addSlot(String, JIPipeDataSlotInfo, boolean) - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
addSlot(JIPipeDataSlotInfo, boolean) - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
addSlot(String, JIPipeDataSlotInfo, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIOSlotConfiguration
 
addStop(float, Color) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.LUTData
 
addStringColumn(String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Adds a string column with the given name.
addTab(String, Icon, Component, DocumentTabPane.CloseMode, boolean) - Method in class org.hkijena.jipipe.ui.components.tabs.DocumentTabPane
Adds a new tab
addTab(String, Icon, Component, DocumentTabPane.CloseMode) - Method in class org.hkijena.jipipe.ui.components.tabs.DocumentTabPane
Adds a new tab
addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
 
addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.api.data.serialization.JIPipeDataTableMetadata
 
addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.api.data.serialization.JIPipeMergedDataTableMetadata
 
addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.extensions.parameters.api.matrix.Matrix2D
 
addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.extensions.parameters.library.table.ParameterTable
 
addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
 
addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.ui.batchassistant.DataBatchAssistantTableModel
 
addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.ui.datatable.JIPipeExtendedDataTableModel
 
addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.ui.datatable.JIPipeExtendedMultiDataTableModel
 
addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.ui.datatable.JIPipeSimpleDataBatchTableModel
 
addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.ui.datatracer.DataTracerTableModel
 
addTask(String) - Method in class org.hkijena.jipipe.ui.components.ribbon.Ribbon
Adds a new task.
addTask(String, String) - Method in class org.hkijena.jipipe.ui.components.ribbon.Ribbon
Adds a new task.
AddTemplateContextMenuAction - Class in org.hkijena.jipipe.extensions.nodetemplate
 
AddTemplateContextMenuAction() - Constructor for class org.hkijena.jipipe.extensions.nodetemplate.AddTemplateContextMenuAction
 
addText(String) - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
addText(String, SimpleAttributeSet) - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
addTextAnnotationToAllData(JIPipeTextAnnotation, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Adds an annotation to all existing data
addTo(JIPipeProject, String) - Method in class org.hkijena.jipipe.api.compartments.JIPipeExportedCompartment
Adds the compartment to a project as the specified compartment name
addToForm(FormPanel) - Method in class org.hkijena.jipipe.extensions.imageviewer.plugins3d.SlicerControlsPlugin3D.OrthoSliderPanel
 
addToForm(T, Component) - Method in class org.hkijena.jipipe.ui.components.FormPanel
Adds a component to the form
addToForm(T, Component, MarkdownDocument) - Method in class org.hkijena.jipipe.ui.components.FormPanel
Adds a component to the form
addToggleButton(JToggleButton, ImageViewerPanelCanvas2D) - Method in interface org.hkijena.jipipe.extensions.imageviewer.utils.viewer2d.ImageViewerPanelCanvas2DTool
Adds events to JToggleButton that acts as control for the tool
addToGraph(JIPipeGraphCanvasUI) - Method in class org.hkijena.jipipe.api.nodes.database.CreateNewNodeByExampleDatabaseEntry
 
addToGraph(JIPipeGraphCanvasUI) - Method in class org.hkijena.jipipe.api.nodes.database.CreateNewNodeByInfoDatabaseEntry
 
addToGraph(JIPipeGraphCanvasUI) - Method in class org.hkijena.jipipe.api.nodes.database.ExistingCompartmentDatabaseEntry
 
addToGraph(JIPipeGraphCanvasUI) - Method in class org.hkijena.jipipe.api.nodes.database.ExistingPipelineNodeDatabaseEntry
 
addToGraph(JIPipeGraphCanvasUI) - Method in interface org.hkijena.jipipe.api.nodes.database.JIPipeNodeDatabaseEntry
 
addToken(char[], int, int, int, int, boolean) - Method in class org.hkijena.jipipe.extensions.r.ui.RTokenMaker
Adds the token specified to the current linked list of tokens.
addToOpenPanels() - Method in class org.hkijena.jipipe.extensions.imageviewer.JIPipeImageViewer
 
addToRoiManager(RoiManager) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Adds the ROI to an existing ROI manager instance
AddToROIManagerDataDisplay - Class in org.hkijena.jipipe.extensions.imagejdatatypes.display
 
AddToROIManagerDataDisplay() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.display.AddToROIManagerDataDisplay
 
addToSelection(JIPipeGraphNodeUI) - Method in class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphCanvasUI
Adds an algorithm to the selection
addToSelection(JIPipeGraphNodeUI) - Method in class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphEditorUI
Adds an algorithm to the selection
addToTable(ResultsTable) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Adds the table to an existing table
addUpdateSite(UpdateSite) - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager
 
addUser(Object) - Method in class org.hkijena.jipipe.api.data.JIPipeDataItemStore
Marks the provided object as user of this data
addVerticalGlue() - Method in class org.hkijena.jipipe.ui.components.FormPanel
Adds a component that acts as Box.verticalGlue()
addVerticalGlue(Component, MarkdownDocument) - Method in class org.hkijena.jipipe.ui.components.FormPanel
Adds a vertical glue component
addWideToForm(T) - Method in class org.hkijena.jipipe.ui.components.FormPanel
Adds a component.
addWideToForm(T, MarkdownDocument) - Method in class org.hkijena.jipipe.ui.components.FormPanel
Adds a component.
adjustmentValueChanged(AdjustmentEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphEditorMinimap
 
AdvancedFileChooser - Class in org.hkijena.jipipe.ui.components
 
AdvancedFileChooser() - Constructor for class org.hkijena.jipipe.ui.components.AdvancedFileChooser
 
AdvancedFileChooser(File) - Constructor for class org.hkijena.jipipe.ui.components.AdvancedFileChooser
 
AdvancedFileChooser.FileChooserComponent - Class in org.hkijena.jipipe.ui.components
 
AdvancedFileChooser.FileChooserComponentUI - Class in org.hkijena.jipipe.ui.components
 
afterSetRow() - Method in class org.hkijena.jipipe.extensions.ijtrackmate.display.algorithms.CachedTrackmateAlgorithmViewerWindow
 
afterSetRow() - Method in class org.hkijena.jipipe.extensions.ijtrackmate.display.trackscheme.TrackSchemeCachedDataViewerWindow
 
afterSetRow() - Method in class org.hkijena.jipipe.extensions.imageviewer.JIPipeImageViewerCacheDataViewerWindow
 
afterSetRow() - Method in class org.hkijena.jipipe.extensions.multiparameters.datatypes.CachedParametersDataViewerWindow
 
afterSetRow() - Method in class org.hkijena.jipipe.extensions.plots.CachedPlotViewerWindow
 
afterSetRow() - Method in class org.hkijena.jipipe.extensions.strings.CachedTextViewerWindow
 
afterSetRow() - Method in class org.hkijena.jipipe.extensions.tables.display.CachedTableViewerWindow
 
afterSetRow() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataViewerWindow
Called after the data row was changed
AlgorithmFinderSettings() - Constructor for class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings.AlgorithmFinderSettings
 
AlgorithmGraphCopyNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.compartments.contextmenu.clipboard.clipboard
 
AlgorithmGraphCopyNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.compartments.contextmenu.clipboard.clipboard.AlgorithmGraphCopyNodeUIContextAction
 
AlgorithmGraphCutNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.compartments.contextmenu.clipboard.clipboard
 
AlgorithmGraphCutNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.compartments.contextmenu.clipboard.clipboard.AlgorithmGraphCutNodeUIContextAction
 
AlgorithmGraphDuplicateNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.compartments.contextmenu.clipboard.clipboard
 
AlgorithmGraphDuplicateNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.compartments.contextmenu.clipboard.clipboard.AlgorithmGraphDuplicateNodeUIContextAction
 
AlgorithmGraphDuplicateWithInputConnectionsNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.compartments.contextmenu.clipboard.clipboard
 
AlgorithmGraphDuplicateWithInputConnectionsNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.compartments.contextmenu.clipboard.clipboard.AlgorithmGraphDuplicateWithInputConnectionsNodeUIContextAction
 
AlgorithmGraphPasteNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.compartments.contextmenu.clipboard.clipboard
 
AlgorithmGraphPasteNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.compartments.contextmenu.clipboard.clipboard.AlgorithmGraphPasteNodeUIContextAction
 
ALL_DESCRIPTIONS - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.ImageStatisticsSetParameter
 
AllMeasurementExpressionParameterVariablesInfo - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util.measure
A variable source that contains the ImageJ measurements.
AllMeasurementExpressionParameterVariablesInfo() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.AllMeasurementExpressionParameterVariablesInfo
 
ALLOWED_PARAMETER_CLASSES - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.MacroWrapperAlgorithm
 
ALLOWED_PARAMETER_CLASSES - Static variable in class org.hkijena.jipipe.extensions.python.PythonUtils
 
ALLOWED_PARAMETER_CLASSES - Static variable in class org.hkijena.jipipe.extensions.r.RUtils
 
ALLOWED_PARAMETER_TYPES - Static variable in class org.hkijena.jipipe.extensions.clij2.CLIJPlugin
 
ALLOWED_VALUES - Static variable in class org.hkijena.jipipe.extensions.ijtrackmate.parameters.EdgeFeature
 
ALLOWED_VALUES - Static variable in class org.hkijena.jipipe.extensions.ijtrackmate.parameters.SpotFeature
 
ALLOWED_VALUES - Static variable in class org.hkijena.jipipe.extensions.ijtrackmate.parameters.TrackFeature
 
allowsDragConnections() - Method in class org.hkijena.jipipe.api.grapheditortool.JIPipeConnectGraphEditorTool
 
allowsDragConnections() - Method in class org.hkijena.jipipe.api.grapheditortool.JIPipeDefaultGraphEditorTool
 
allowsDragConnections() - Method in class org.hkijena.jipipe.api.grapheditortool.JIPipeMoveNodesGraphEditorTool
 
allowsDragConnections() - Method in class org.hkijena.jipipe.api.grapheditortool.JIPipeRewireGraphEditorTool
 
allowsDragConnections() - Method in interface org.hkijena.jipipe.api.grapheditortool.JIPipeToggleableGraphEditorTool
 
allowsDragConnections() - Method in class org.hkijena.jipipe.api.nodes.annotation.JIPipeAnnotationGraphNodeTool
 
allowsDragNodes() - Method in class org.hkijena.jipipe.api.grapheditortool.JIPipeConnectGraphEditorTool
 
allowsDragNodes() - Method in class org.hkijena.jipipe.api.grapheditortool.JIPipeDefaultGraphEditorTool
 
allowsDragNodes() - Method in class org.hkijena.jipipe.api.grapheditortool.JIPipeMoveNodesGraphEditorTool
 
allowsDragNodes() - Method in class org.hkijena.jipipe.api.grapheditortool.JIPipeRewireGraphEditorTool
 
allowsDragNodes() - Method in interface org.hkijena.jipipe.api.grapheditortool.JIPipeToggleableGraphEditorTool
 
allowsDragNodes() - Method in class org.hkijena.jipipe.api.nodes.annotation.JIPipeAnnotationGraphNodeTool
 
allowsInputSlots() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
allowsInputSlots() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
allowsOutputSlots() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
allowsOutputSlots() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
AllROI3DMeasurementExpressionParameterVariablesInfo - Class in org.hkijena.jipipe.extensions.ij3d.utils
A variable source that contains the ImageJ measurements.
AllROI3DMeasurementExpressionParameterVariablesInfo() - Constructor for class org.hkijena.jipipe.extensions.ij3d.utils.AllROI3DMeasurementExpressionParameterVariablesInfo
 
AllROI3DRelationMeasurementExpressionParameterVariablesInfo - Class in org.hkijena.jipipe.extensions.ij3d.utils
A variable source that contains the ImageJ measurements.
AllROI3DRelationMeasurementExpressionParameterVariablesInfo() - Constructor for class org.hkijena.jipipe.extensions.ij3d.utils.AllROI3DRelationMeasurementExpressionParameterVariablesInfo
 
AlwaysOnTopToggle - Class in org.hkijena.jipipe.ui.components.window
 
AlwaysOnTopToggle(JWindow) - Constructor for class org.hkijena.jipipe.ui.components.window.AlwaysOnTopToggle
 
AlwaysOnTopToggle(JFrame) - Constructor for class org.hkijena.jipipe.ui.components.window.AlwaysOnTopToggle
 
AlwaysOnTopToggle(JDialog) - Constructor for class org.hkijena.jipipe.ui.components.window.AlwaysOnTopToggle
 
AnalyzeSkeleton2D3DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.analyze
 
AnalyzeSkeleton2D3DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.analyze.AnalyzeSkeleton2D3DAlgorithm
 
AnalyzeSkeleton2D3DAlgorithm(AnalyzeSkeleton2D3DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.analyze.AnalyzeSkeleton2D3DAlgorithm
 
AnalyzeSkeleton2D3DAlgorithm.CycleRemovalMethod - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.analyze
 
AnalyzeSkeleton2D3DAlgorithm.EndRemovalMethod - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.analyze
 
AnalyzeSkeleton2D3DAlgorithm.OutputParameters - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.analyze
 
Anchor - Enum in org.hkijena.jipipe.extensions.parameters.library.roi
An anchor
AnchorParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.library.roi
Editor for Margin
AnchorParameterEditorUI(JIPipeWorkbench, JIPipeParameterTree, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.library.roi.AnchorParameterEditorUI
 
AnchorParameterSettings - Annotation Type in org.hkijena.jipipe.extensions.parameters.library.roi
Allows to modify the behavior of the Anchor parameter editor UI
AnimatedIcon - Class in org.hkijena.jipipe.ui.components.icons
 
AnimatedIcon(Component, ImageIcon, ImageIcon, int, double) - Constructor for class org.hkijena.jipipe.ui.components.icons.AnimatedIcon
 
ANIMATION_DELAY - Static variable in class org.hkijena.jipipe.ui.components.icons.NewThrobberIcon
 
AnimationSpeedPlugin2D - Class in org.hkijena.jipipe.extensions.imageviewer.plugins2d
 
AnimationSpeedPlugin2D(JIPipeImageViewer) - Constructor for class org.hkijena.jipipe.extensions.imageviewer.plugins2d.AnimationSpeedPlugin2D
 
AnimationSpeedPlugin3D - Class in org.hkijena.jipipe.extensions.imageviewer.plugins3d
 
AnimationSpeedPlugin3D(JIPipeImageViewer) - Constructor for class org.hkijena.jipipe.extensions.imageviewer.plugins3d.AnimationSpeedPlugin3D
 
AnnotateByExpression - Class in org.hkijena.jipipe.extensions.annotation.algorithms
Algorithm that annotates all data with the same annotation
AnnotateByExpression(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateByExpression
 
AnnotateByExpression(AnnotateByExpression) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateByExpression
Copies the algorithm
AnnotateByExpression.VariablesInfo - Class in org.hkijena.jipipe.extensions.annotation.algorithms
 
AnnotateByImageStatisticsExpressionAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.analyze
Wrapper around RoiManager
AnnotateByImageStatisticsExpressionAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.analyze.AnnotateByImageStatisticsExpressionAlgorithm
Instantiates a new node type.
AnnotateByImageStatisticsExpressionAlgorithm(AnnotateByImageStatisticsExpressionAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.analyze.AnnotateByImageStatisticsExpressionAlgorithm
Instantiates a new node type.
AnnotateByProjectPaths - Class in org.hkijena.jipipe.extensions.annotation.algorithms
 
AnnotateByProjectPaths(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateByProjectPaths
 
AnnotateByProjectPaths(AnnotateByProjectPaths) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateByProjectPaths
 
AnnotateByProjectPaths.Entry - Class in org.hkijena.jipipe.extensions.annotation.algorithms
 
AnnotateByTablePropertiesAlgorithm - Class in org.hkijena.jipipe.extensions.tables.nodes.annotations
 
AnnotateByTablePropertiesAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.annotations.AnnotateByTablePropertiesAlgorithm
 
AnnotateByTablePropertiesAlgorithm(AnnotateByTablePropertiesAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.annotations.AnnotateByTablePropertiesAlgorithm
 
AnnotateDataWithTableValues - Class in org.hkijena.jipipe.extensions.tables.nodes.annotations
 
AnnotateDataWithTableValues(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.annotations.AnnotateDataWithTableValues
 
AnnotateDataWithTableValues(AnnotateDataWithTableValues) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.annotations.AnnotateDataWithTableValues
 
AnnotateDataWithTableValues.AnnotationSettings - Class in org.hkijena.jipipe.extensions.tables.nodes.annotations
 
AnnotateOMERODatasetReferenceAlgorithm - Class in org.hkijena.jipipe.extensions.omero.nodes.annotate
 
AnnotateOMERODatasetReferenceAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.omero.nodes.annotate.AnnotateOMERODatasetReferenceAlgorithm
 
AnnotateOMERODatasetReferenceAlgorithm(AnnotateOMERODatasetReferenceAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.omero.nodes.annotate.AnnotateOMERODatasetReferenceAlgorithm
 
AnnotateOMEROImageReferenceAlgorithm - Class in org.hkijena.jipipe.extensions.omero.nodes.annotate
 
AnnotateOMEROImageReferenceAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.omero.nodes.annotate.AnnotateOMEROImageReferenceAlgorithm
 
AnnotateOMEROImageReferenceAlgorithm(AnnotateOMEROImageReferenceAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.omero.nodes.annotate.AnnotateOMEROImageReferenceAlgorithm
 
AnnotateOMEROProjectReferenceAlgorithm - Class in org.hkijena.jipipe.extensions.omero.nodes.annotate
 
AnnotateOMEROProjectReferenceAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.omero.nodes.annotate.AnnotateOMEROProjectReferenceAlgorithm
 
AnnotateOMEROProjectReferenceAlgorithm(AnnotateOMEROProjectReferenceAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.omero.nodes.annotate.AnnotateOMEROProjectReferenceAlgorithm
 
AnnotateOMEWithMetadataAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.ome
 
AnnotateOMEWithMetadataAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.ome.AnnotateOMEWithMetadataAlgorithm
 
AnnotateOMEWithMetadataAlgorithm(AnnotateOMEWithMetadataAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.ome.AnnotateOMEWithMetadataAlgorithm
 
AnnotateOMEWithMetadataAlgorithm.Entry - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.ome
 
AnnotateWithAnnotationTable - Class in org.hkijena.jipipe.extensions.annotation.algorithms
Algorithm that merges the annotations of all inputs and outputs the data with the shared annotations
AnnotateWithAnnotationTable(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithAnnotationTable
Creates a new instance
AnnotateWithAnnotationTable(AnnotateWithAnnotationTable) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithAnnotationTable
Creates a copy
AnnotateWithData - Class in org.hkijena.jipipe.extensions.annotation.algorithms
 
AnnotateWithData(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithData
 
AnnotateWithData(AnnotateWithData) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithData
 
AnnotateWithDataString - Class in org.hkijena.jipipe.extensions.annotation.algorithms
Generates annotations from filenames
AnnotateWithDataString(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithDataString
New instance
AnnotateWithDataString(AnnotateWithDataString) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithDataString
Copies the algorithm
AnnotateWithDataTableProperties - Class in org.hkijena.jipipe.extensions.utils.algorithms.datatable
 
AnnotateWithDataTableProperties(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.datatable.AnnotateWithDataTableProperties
 
AnnotateWithDataTableProperties(AnnotateWithDataTableProperties) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.datatable.AnnotateWithDataTableProperties
 
AnnotateWithJsonDataAlgorithm - Class in org.hkijena.jipipe.extensions.strings.nodes.json
 
AnnotateWithJsonDataAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.strings.nodes.json.AnnotateWithJsonDataAlgorithm
 
AnnotateWithJsonDataAlgorithm(AnnotateWithJsonDataAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.strings.nodes.json.AnnotateWithJsonDataAlgorithm
 
AnnotateWithJsonDataAlgorithm.Entry - Class in org.hkijena.jipipe.extensions.strings.nodes.json
 
AnnotateWithOverlapMeasureLabelsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.labels
 
AnnotateWithOverlapMeasureLabelsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.labels.AnnotateWithOverlapMeasureLabelsAlgorithm
 
AnnotateWithOverlapMeasureLabelsAlgorithm(AnnotateWithOverlapMeasureLabelsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.labels.AnnotateWithOverlapMeasureLabelsAlgorithm
 
AnnotateWithPathProperties - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
 
AnnotateWithPathProperties(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotateWithPathProperties
 
AnnotateWithPathProperties(AnnotateWithPathProperties) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotateWithPathProperties
 
AnnotateWithSourceSlot - Class in org.hkijena.jipipe.extensions.annotation.algorithms
Generates annotations from filenames
AnnotateWithSourceSlot(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithSourceSlot
New instance
AnnotateWithSourceSlot(AnnotateWithSourceSlot) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithSourceSlot
Copies the algorithm
AnnotateWithTextDataAlgorithm - Class in org.hkijena.jipipe.extensions.strings.nodes.text
 
AnnotateWithTextDataAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.strings.nodes.text.AnnotateWithTextDataAlgorithm
 
AnnotateWithTextDataAlgorithm(AnnotateWithTextDataAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.strings.nodes.text.AnnotateWithTextDataAlgorithm
 
AnnotateWithTextDataAlgorithm.Entry - Class in org.hkijena.jipipe.extensions.strings.nodes.text
 
AnnotateWithXPathDataAlgorithm - Class in org.hkijena.jipipe.extensions.strings.nodes.xml
 
AnnotateWithXPathDataAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.strings.nodes.xml.AnnotateWithXPathDataAlgorithm
 
AnnotateWithXPathDataAlgorithm(AnnotateWithXPathDataAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.strings.nodes.xml.AnnotateWithXPathDataAlgorithm
 
AnnotateWithXPathDataAlgorithm.Entry - Class in org.hkijena.jipipe.extensions.strings.nodes.xml
 
AnnotationFilterExpression - Class in org.hkijena.jipipe.extensions.annotation.algorithms
 
AnnotationFilterExpression() - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotationFilterExpression
 
AnnotationFilterExpression(String) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotationFilterExpression
 
AnnotationFilterExpression(AbstractExpressionParameter) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotationFilterExpression
 
AnnotationGeneratorExpression - Class in org.hkijena.jipipe.extensions.expressions
An expression that is used to generate annotations for data
AnnotationGeneratorExpression() - Constructor for class org.hkijena.jipipe.extensions.expressions.AnnotationGeneratorExpression
 
AnnotationGeneratorExpression(String) - Constructor for class org.hkijena.jipipe.extensions.expressions.AnnotationGeneratorExpression
 
AnnotationGeneratorExpression(AbstractExpressionParameter) - Constructor for class org.hkijena.jipipe.extensions.expressions.AnnotationGeneratorExpression
 
AnnotationGeneratorExpressionVariablesInfo - Class in org.hkijena.jipipe.extensions.expressions
 
AnnotationGeneratorExpressionVariablesInfo() - Constructor for class org.hkijena.jipipe.extensions.expressions.AnnotationGeneratorExpressionVariablesInfo
 
AnnotationInfoPlugin2D - Class in org.hkijena.jipipe.extensions.imageviewer.plugins2d
To be used with CachedImagePlusDataViewerWindow and other similar implementations that have access to the cache
AnnotationInfoPlugin2D(JIPipeImageViewer) - Constructor for class org.hkijena.jipipe.extensions.imageviewer.plugins2d.AnnotationInfoPlugin2D
 
AnnotationInfoPlugin3D - Class in org.hkijena.jipipe.extensions.imageviewer.plugins3d
To be used with CachedImagePlusDataViewerWindow and other similar implementations that have access to the cache
AnnotationInfoPlugin3D(JIPipeImageViewer) - Constructor for class org.hkijena.jipipe.extensions.imageviewer.plugins3d.AnnotationInfoPlugin3D
 
annotationListToMap(Collection<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode) - Static method in class org.hkijena.jipipe.api.annotation.JIPipeTextAnnotation
Converts a set of annotations to a map
annotationListToPython(Collection<JIPipeTextAnnotation>) - Static method in class org.hkijena.jipipe.api.annotation.JIPipeTextAnnotation
Converts a list of annotations into a Python dictionary
annotationMapToPython(Map<String, JIPipeTextAnnotation>) - Static method in class org.hkijena.jipipe.api.annotation.JIPipeTextAnnotation
Converts a map of annotations into a Python dictionary
AnnotationQueryExpression - Class in org.hkijena.jipipe.extensions.expressions
An expression that is used to query annotations
AnnotationQueryExpression() - Constructor for class org.hkijena.jipipe.extensions.expressions.AnnotationQueryExpression
 
AnnotationQueryExpression(String) - Constructor for class org.hkijena.jipipe.extensions.expressions.AnnotationQueryExpression
 
AnnotationQueryExpression(AbstractExpressionParameter) - Constructor for class org.hkijena.jipipe.extensions.expressions.AnnotationQueryExpression
 
AnnotationQueryExpressionVariablesInfo - Class in org.hkijena.jipipe.extensions.expressions
 
AnnotationQueryExpressionVariablesInfo() - Constructor for class org.hkijena.jipipe.extensions.expressions.AnnotationQueryExpressionVariablesInfo
 
ANNOTATIONS_VARIABLE - Static variable in class org.hkijena.jipipe.extensions.expressions.JIPipeExpressionParameterVariableInfo
 
AnnotationSettings() - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.annotations.AnnotateDataWithTableValues.AnnotationSettings
 
AnnotationsNodeTypeCategory - Class in org.hkijena.jipipe.api.nodes.categories
 
AnnotationsNodeTypeCategory() - Constructor for class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory
 
AnnotationsPlugin - Class in org.hkijena.jipipe.extensions.annotation
Extension that provides data types and algorithms to modify data annotations
AnnotationsPlugin() - Constructor for class org.hkijena.jipipe.extensions.annotation.AnnotationsPlugin
 
AnnotationsToOMEROKeyValuePairExporter - Class in org.hkijena.jipipe.extensions.omero.parameters
 
AnnotationsToOMEROKeyValuePairExporter() - Constructor for class org.hkijena.jipipe.extensions.omero.parameters.AnnotationsToOMEROKeyValuePairExporter
 
AnnotationsToOMEROKeyValuePairExporter(AnnotationsToOMEROKeyValuePairExporter) - Constructor for class org.hkijena.jipipe.extensions.omero.parameters.AnnotationsToOMEROKeyValuePairExporter
 
AnnotationsToOMEROTagExporter - Class in org.hkijena.jipipe.extensions.omero.parameters
 
AnnotationsToOMEROTagExporter() - Constructor for class org.hkijena.jipipe.extensions.omero.parameters.AnnotationsToOMEROTagExporter
 
AnnotationsToOMEROTagExporter(AnnotationsToOMEROTagExporter) - Constructor for class org.hkijena.jipipe.extensions.omero.parameters.AnnotationsToOMEROTagExporter
 
AnnotationsToParametersAlgorithm - Class in org.hkijena.jipipe.extensions.multiparameters.nodes
 
AnnotationsToParametersAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.multiparameters.nodes.AnnotationsToParametersAlgorithm
 
AnnotationsToParametersAlgorithm(AnnotationsToParametersAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.multiparameters.nodes.AnnotationsToParametersAlgorithm
 
annotationsToPython(StringBuilder, Collection<JIPipeTextAnnotation>) - Static method in class org.hkijena.jipipe.extensions.python.PythonUtils
Converts annotations into Python code.
AnnotationTableData - Class in org.hkijena.jipipe.extensions.tables.datatypes
A special kind of ResultsTableData that stores annotation columns.
AnnotationTableData() - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData
 
AnnotationTableData(Map<String, TableColumn>) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData
 
AnnotationTableData(Collection<TableColumn>) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData
 
AnnotationTableData(ResultsTable) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData
 
AnnotationTableData(ResultsTableData) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData
 
AnnotationTableFromFile - Class in org.hkijena.jipipe.extensions.annotation.datasources
Imports AnnotationTableData from a file
AnnotationTableFromFile(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.datasources.AnnotationTableFromFile
 
AnnotationTableFromFile(AnnotationTableFromFile) - Constructor for class org.hkijena.jipipe.extensions.annotation.datasources.AnnotationTableFromFile
Copies the algorithm
AnnotationTableToPaths - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
Filters input files
AnnotationTableToPaths(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationTableToPaths
Instantiates the algorithm
AnnotationTableToPaths(AnnotationTableToPaths) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationTableToPaths
Copies the algorithm
AnnotationToPath - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
Filters input files
AnnotationToPath(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationToPath
Instantiates the algorithm
AnnotationToPath(AnnotationToPath) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationToPath
Copies the algorithm
annotationType() - Method in class org.hkijena.jipipe.api.JIPipeDocumentation
 
annotationType() - Method in class org.hkijena.jipipe.api.nodes.DefaultAddJIPipeInputSlot
 
annotationType() - Method in class org.hkijena.jipipe.api.nodes.DefaultAddJIPipeOutputSlot
 
AnyClassFilter - Class in org.hkijena.jipipe.utils.classfilters
 
AnyClassFilter() - Constructor for class org.hkijena.jipipe.utils.classfilters.AnyClassFilter
 
APIErrorValidationReportContext - Class in org.hkijena.jipipe.api.validation.contexts
 
APIErrorValidationReportContext() - Constructor for class org.hkijena.jipipe.api.validation.contexts.APIErrorValidationReportContext
 
APIErrorValidationReportContext(JIPipeValidationReportContext) - Constructor for class org.hkijena.jipipe.api.validation.contexts.APIErrorValidationReportContext
 
AppendRectangularRoiAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.roi.generate
Deprecated.
AppendRectangularRoiAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.roi.generate.AppendRectangularRoiAlgorithm
Deprecated.
Instantiates a new node type.
AppendRectangularRoiAlgorithm(AppendRectangularRoiAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.roi.generate.AppendRectangularRoiAlgorithm
Deprecated.
Instantiates a new node type.
apply(JIPipeDataTable, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.compat.ImageJDataExportOperation
 
apply(List<Object>, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.compat.ImageJDataImportOperation
 
apply(double, JIPipeExpressionVariablesMap) - Method in class org.hkijena.jipipe.extensions.expressions.NumericFunctionExpression
 
apply(Object) - Method in class org.hkijena.jipipe.extensions.expressions.ui.ExpressionBuilderUI.EntryToStringFunction
 
apply(JIPipeExpressionVariablesMap, ImagePlus, ImageSliceIndex) - Static method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.Image5DSliceIndexExpressionParameterVariablesInfo
 
apply(double) - Method in enum org.hkijena.jipipe.extensions.parameters.library.colors.ColorMap
Generates a color according to the color map
apply(String) - Method in class org.hkijena.jipipe.extensions.parameters.library.patterns.StringPatternExtraction
 
apply(Collection<Boolean>) - Method in enum org.hkijena.jipipe.extensions.parameters.library.util.LogicalOperation
Apply the logical operation for the items
apply(TableColumn) - Method in interface org.hkijena.jipipe.extensions.tables.ColumnOperation
Applies the operation
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.AbsoluteColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ArcusCosineColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ArcusSineColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ArcusTangentColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.CeilingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ClampNegativeColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ClampPositiveColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.CosineColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.DegreeToRadiansColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ExpColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.FactorizeColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.FloorColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.HyperbolicCosineColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.HyperbolicSineColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.HyperbolicTangentColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.LnColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.Log10ColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.OccurrencesColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.RadiansToDegreeColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.RemoveNaNColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.RoundColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.SignColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.SineColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.SortAscendingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.SortDescendingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.SqrtColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.SquareColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.TangentColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ToNumericColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ToStringColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.GetFirstIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.GetLastIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.MergeToJsonIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsAverageIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsCountIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsCountNonZeroIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsCumulativeSumColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsGeometricMeanIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsKurtosisIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsMaxIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsMedianIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsMinIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsModeIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsSkewnessIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsStandardDeviationIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsVarianceIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsWeightedSumColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.SumIntegratingColumnOperation
 
apply(Integer) - Method in class org.hkijena.jipipe.utils.AutoResizeSplitPane.DynamicSidebarRatio
 
apply(Integer) - Method in class org.hkijena.jipipe.utils.AutoResizeSplitPane.FixedRatio
 
ApplyColorMathExpression2DExpression - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.math
 
ApplyColorMathExpression2DExpression(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.math.ApplyColorMathExpression2DExpression
 
ApplyColorMathExpression2DExpression(ApplyColorMathExpression2DExpression) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.math.ApplyColorMathExpression2DExpression
 
applyCustomCalibration() - Method in class org.hkijena.jipipe.extensions.imageviewer.utils.viewer2d.ImageViewer2DDisplayRangeControl
 
applyCustomCalibration() - Method in class org.hkijena.jipipe.extensions.imageviewer.utils.viewer3d.ImageViewer3DDisplayRangeControl
 
ApplyDisplayContrastAlgorithm - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms
 
ApplyDisplayContrastAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ApplyDisplayContrastAlgorithm
 
ApplyDisplayContrastAlgorithm(JIPipeSimpleIteratingAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ApplyDisplayContrastAlgorithm
 
ApplyDistanceTransform2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.math.distancemap
Wrapper around EDM
ApplyDistanceTransform2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.math.distancemap.ApplyDistanceTransform2DAlgorithm
Instantiates a new node type.
ApplyDistanceTransform2DAlgorithm(ApplyDistanceTransform2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.math.distancemap.ApplyDistanceTransform2DAlgorithm
Instantiates a new node type.
ApplyExpressionPerLabelAlgorithm - Class in org.hkijena.jipipe.extensions.tables.nodes.transform
 
ApplyExpressionPerLabelAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.transform.ApplyExpressionPerLabelAlgorithm
 
ApplyExpressionPerLabelAlgorithm(ApplyExpressionPerLabelAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.transform.ApplyExpressionPerLabelAlgorithm
 
ApplyExpressionPerRowAlgorithm - Class in org.hkijena.jipipe.extensions.tables.nodes.rows
Deprecated.
ApplyExpressionPerRowAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.rows.ApplyExpressionPerRowAlgorithm
Deprecated.
 
ApplyExpressionPerRowAlgorithm(ApplyExpressionPerRowAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.rows.ApplyExpressionPerRowAlgorithm
Deprecated.
 
ApplyExpressionPerRowAlgorithm.VariablesInfo - Class in org.hkijena.jipipe.extensions.tables.nodes.rows
Deprecated.
 
ApplyExpressionPerRowAlgorithm2 - Class in org.hkijena.jipipe.extensions.tables.nodes.rows
 
ApplyExpressionPerRowAlgorithm2(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.rows.ApplyExpressionPerRowAlgorithm2
 
ApplyExpressionPerRowAlgorithm2(ApplyExpressionPerRowAlgorithm2) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.rows.ApplyExpressionPerRowAlgorithm2
 
ApplyExpressionPerRowAlgorithm2.Entry - Class in org.hkijena.jipipe.extensions.tables.nodes.rows
 
ApplyExpressionPerRowAlgorithm2.VariablesInfo - Class in org.hkijena.jipipe.extensions.tables.nodes.rows
 
ApplyExpressionToColumnsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.nodes.columns
Algorithm that integrates columns
ApplyExpressionToColumnsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.columns.ApplyExpressionToColumnsAlgorithm
Creates a new instance
ApplyExpressionToColumnsAlgorithm(ApplyExpressionToColumnsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.columns.ApplyExpressionToColumnsAlgorithm
Creates a copy
applyLUT(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.lut.LUTInverterAlgorithm
 
applyLUT() - Method in class org.hkijena.jipipe.extensions.imageviewer.utils.ImageViewerLUTEditor
 
applyLUT() - Method in class org.hkijena.jipipe.extensions.imageviewer.utils.ImageViewerOpacityLUTEditor
 
applyLUT() - Method in class org.hkijena.jipipe.extensions.imageviewer.utils.viewer2d.ImageViewer2DLUTEditor
 
applyLUT() - Method in class org.hkijena.jipipe.extensions.imageviewer.utils.viewer3d.ImageViewer3DLUTEditor
 
applyLUT() - Method in class org.hkijena.jipipe.extensions.imageviewer.utils.viewer3d.ImageViewer3DOpacityLUTEditor
 
ApplyLUTAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.lut
 
ApplyLUTAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.lut.ApplyLUTAlgorithm
 
ApplyLUTAlgorithm(ApplyLUTAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.lut.ApplyLUTAlgorithm
 
ApplyMath2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.math
Wrapper around ImageProcessor
ApplyMath2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.math.ApplyMath2DAlgorithm
Instantiates a new node type.
ApplyMath2DAlgorithm(ApplyMath2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.math.ApplyMath2DAlgorithm
Instantiates a new node type.
ApplyMath2DAlgorithm.Transformation - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.math
Available transformation functions
ApplyMathExpression2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.math
Wrapper around ImageProcessor
ApplyMathExpression2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.math.ApplyMathExpression2DAlgorithm
Instantiates a new node type.
ApplyMathExpression2DAlgorithm(ApplyMathExpression2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.math.ApplyMathExpression2DAlgorithm
Instantiates a new node type.
ApplyMultiOrthoSlicerRun(List<Content>, int, List<Integer>, List<Integer>, List<Integer>, boolean) - Constructor for class org.hkijena.jipipe.extensions.imageviewer.plugins3d.SlicerControlsPlugin3D.ApplyMultiOrthoSlicerRun
 
applyOperation(List<ResultsTableData.Index>, ConvertingColumnOperation) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Applies an operation to the selected cells
ApplyOrthoSlicerRun(List<Content>, int, int, int, int, boolean, boolean, boolean) - Constructor for class org.hkijena.jipipe.extensions.imageviewer.plugins3d.SlicerControlsPlugin3D.ApplyOrthoSlicerRun
 
applyRatio() - Method in class org.hkijena.jipipe.utils.AutoResizeSplitPane
 
ApplyRun - Class in org.hkijena.jipipe.ui.ijupdater
 
ApplyRun(FilesCollection) - Constructor for class org.hkijena.jipipe.ui.ijupdater.ApplyRun
 
applyTemplateToItems() - Method in class org.hkijena.jipipe.extensions.parameters.library.collections.ParameterCollectionList
Applies the entries of the current template to all items (adding/removing/changing items)
applyThemeToCodeEditor(RSyntaxTextArea) - Static method in class org.hkijena.jipipe.utils.UIUtils
 
applyTo(Roi, JIPipeExpressionVariablesMap) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.roi.draw.ROIProperties
 
applyToRoi(Roi) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ROIEditor
 
applyToRoiReference(Roi, JIPipeExpressionVariablesMap) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.roi.draw.ROIProperties
Note that this is without cloning the ROI
ApplyTransform2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.math
Wrapper around ImageProcessor
ApplyTransform2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.math.ApplyTransform2DAlgorithm
Instantiates a new node type.
ApplyTransform2DAlgorithm(ApplyTransform2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.math.ApplyTransform2DAlgorithm
Instantiates a new node type.
ApplyTransform2DAlgorithm.Transformation - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.math
Available transformation functions
ApplyVectorMathExpression2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.math
Wrapper around ImageProcessor
ApplyVectorMathExpression2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.math.ApplyVectorMathExpression2DAlgorithm
Instantiates a new node type.
ApplyVectorMathExpression2DAlgorithm(ApplyVectorMathExpression2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.math.ApplyVectorMathExpression2DAlgorithm
Instantiates a new node type.
archive(JIPipeWriteDataStorage, JIPipeWriteDataStorage) - Method in class org.hkijena.jipipe.ui.ArchiveProjectRun
 
ArchiveProjectRun - Class in org.hkijena.jipipe.ui
 
ArchiveProjectRun(JIPipeProject) - Constructor for class org.hkijena.jipipe.ui.ArchiveProjectRun
 
ArchiveProjectToDirectoryRun - Class in org.hkijena.jipipe.ui
 
ArchiveProjectToDirectoryRun(JIPipeProject, Path) - Constructor for class org.hkijena.jipipe.ui.ArchiveProjectToDirectoryRun
 
ArchiveProjectToZIPRun - Class in org.hkijena.jipipe.ui
 
ArchiveProjectToZIPRun(JIPipeProject, Path) - Constructor for class org.hkijena.jipipe.ui.ArchiveProjectToZIPRun
 
archiveTo(JIPipeWriteDataStorage, JIPipeWriteDataStorage, JIPipeProgressInfo, Path) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Called when the node is being archived into the specified storage.
archiveTo(JIPipeWriteDataStorage, JIPipeWriteDataStorage, JIPipeProgressInfo, Path) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileDataSource
 
archiveTo(JIPipeWriteDataStorage, JIPipeWriteDataStorage, JIPipeProgressInfo, Path) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileListDataSource
 
archiveTo(JIPipeWriteDataStorage, JIPipeWriteDataStorage, JIPipeProgressInfo, Path) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderDataSource
 
archiveTo(JIPipeWriteDataStorage, JIPipeWriteDataStorage, JIPipeProgressInfo, Path) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderListDataSource
 
archiveTo(JIPipeWriteDataStorage, JIPipeWriteDataStorage, JIPipeProgressInfo, Path) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.PathDataSource
 
archiveTo(JIPipeWriteDataStorage, JIPipeWriteDataStorage, JIPipeProgressInfo, Path) - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.PathListDataSource
 
ArchiveUtils - Class in org.hkijena.jipipe.utils
 
ArchiveUtils() - Constructor for class org.hkijena.jipipe.utils.ArchiveUtils
 
ArcusCosineColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a sine function
ArcusCosineColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.ArcusCosineColumnOperation
 
ArcusSineColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a sine function
ArcusSineColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.ArcusSineColumnOperation
 
ArcusTangentColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a sine function
ArcusTangentColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.ArcusTangentColumnOperation
 
argbToMultiChannel(ImgPlus<ARGBType>) - Static method in class org.hkijena.jipipe.extensions.ilastik.utils.ImgUtils
Treat alpha, red, green, and blue values in ARGBType image as a separate, last channel dimension.
ArrangeChannelsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.color
Wrapper around ChannelArranger
ArrangeChannelsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.color.ArrangeChannelsAlgorithm
Instantiates a new node type.
ArrangeChannelsAlgorithm(ArrangeChannelsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.color.ArrangeChannelsAlgorithm
Creates a copy
ArrayUtils - Class in org.hkijena.jipipe.utils
 
ArrayUtils() - Constructor for class org.hkijena.jipipe.utils.ArrayUtils
 
ArrowAnnotationGraphNode - Class in org.hkijena.jipipe.extensions.graphannotation.nodes
 
ArrowAnnotationGraphNode(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.graphannotation.nodes.ArrowAnnotationGraphNode
 
ArrowAnnotationGraphNode(ArrowAnnotationGraphNode) - Constructor for class org.hkijena.jipipe.extensions.graphannotation.nodes.ArrowAnnotationGraphNode
 
ArrowAnnotationGraphNodeTool - Class in org.hkijena.jipipe.extensions.graphannotation.tools
 
ArrowAnnotationGraphNodeTool() - Constructor for class org.hkijena.jipipe.extensions.graphannotation.tools.ArrowAnnotationGraphNodeTool
 
ArrowLessScrollBarUI - Class in org.hkijena.jipipe.ui.theme
 
ArrowLessScrollBarUI() - Constructor for class org.hkijena.jipipe.ui.theme.ArrowLessScrollBarUI
 
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.annotation.AnnotationsPlugin
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.cellpose.CellposePlugin
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.clij2.CLIJPlugin
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.core.CorePlugin
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.filesystem.FilesystemPlugin
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.forms.FormsPlugin
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.ij3d.IJ3DPlugin
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.ijfilaments.FilamentsPlugin
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingPlugin
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.ijtrackmate.TrackMatePlugin
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.ijweka.WekaPlugin
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.ilastik.IlastikPlugin
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.imagej2.ImageJ2Plugin
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsPlugin
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesPlugin
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.imp.ImpPlugin
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.multiparameters.MultiParameterAlgorithmsPlugin
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.omero.OMEROPlugin
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.omnipose.OmniposePlugin
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.plots.PlotsPlugin
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.python.PythonPlugin
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.r.RPlugin
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.scene3d.Scene3DPlugin
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.strings.StringsPlugin
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.tables.TablesPlugin
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.utils.UtilitiesPlugin
Dependency instance to be used for creating the set of dependencies
askOpenInCurrentWindow(Component, String) - Static method in class org.hkijena.jipipe.utils.UIUtils
Asks the user how to open a project: In the current window or a new window
AssembleExtractedROIAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.roi.assemble
 
AssembleExtractedROIAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.roi.assemble.AssembleExtractedROIAlgorithm
 
AssembleExtractedROIAlgorithm(AssembleExtractedROIAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.roi.assemble.AssembleExtractedROIAlgorithm
 
assert2DImage(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
 
assert3DImage(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
 
assert4DImage(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
 
assert5DImage(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
 
assertImageDimensions(ImagePlus, int) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
 
assignData(String, TableColumn) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder
Assigns data to a column
attach(Class<?>, Object) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Attaches an object as the specified type Warning: Attachments are not serialized
attach(Object) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Attaches the object with its class as key.
attachAdditionalMetadata(String, Object) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Attaches additional metadata (persistent)
attachKeyValuePairs(Map<String, String>, DataObject, SecurityContext) - Method in class org.hkijena.jipipe.extensions.omero.util.OMEROGateway
 
attachTags(Set<String>, DataObject, SecurityContext) - Method in class org.hkijena.jipipe.extensions.omero.util.OMEROGateway
 
AUTO_THRESHOLDER - Static variable in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdFunction
 
autoCreateSlots() - Method in class org.hkijena.jipipe.api.grouping.NodeGroup
Automatically creates slots that connect all inputs
autoExpandLeftTop() - Method in class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphCanvasUI
 
autoLayout() - Method in class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphCanvasUI
Applies a full auto-layout method
autoLayoutAll() - Method in class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphCanvasUI
Auto-layouts all UIs
autoPlaceCloseToCursor(JIPipeGraphNodeUI, boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphCanvasUI
 
autoPlaceCloseToLocation(JIPipeGraphNodeUI, Point) - Method in class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphCanvasUI
Moves the node close to a real location
AutoResizeSplitPane - Class in org.hkijena.jipipe.utils
A split pane that automatically resizes itself to a ratio
AutoResizeSplitPane(int, double) - Constructor for class org.hkijena.jipipe.utils.AutoResizeSplitPane
 
AutoResizeSplitPane(int, Component, Component, double) - Constructor for class org.hkijena.jipipe.utils.AutoResizeSplitPane
 
AutoResizeSplitPane(int, AutoResizeSplitPane.Ratio) - Constructor for class org.hkijena.jipipe.utils.AutoResizeSplitPane
 
AutoResizeSplitPane(int, Component, Component, AutoResizeSplitPane.Ratio) - Constructor for class org.hkijena.jipipe.utils.AutoResizeSplitPane
 
AutoResizeSplitPane.DynamicSidebarRatio - Class in org.hkijena.jipipe.utils
A dynamic ratio designed for UIs with a sidebar (defaults to the right) that adapts to the available space Targets a preferred sidebar width
AutoResizeSplitPane.FixedRatio - Class in org.hkijena.jipipe.utils
A fixed ratio
AutoResizeSplitPane.Ratio - Interface in org.hkijena.jipipe.utils
Interface that takes the component width as input and returns the ratio
autoSizeColumns() - Method in class org.hkijena.jipipe.ui.tableeditor.TableEditor
Auto-sizes all columns
AutoThreshold2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.threshold
Thresholding node that thresholds via an auto threshold
AutoThreshold2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.threshold.AutoThreshold2DAlgorithm
 
AutoThreshold2DAlgorithm(AutoThreshold2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.threshold.AutoThreshold2DAlgorithm
Copies the algorithm
AutoThreshold2DAlgorithm.SliceThresholdMode - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.threshold
 
AVAILABLE_FONTS - Static variable in class org.hkijena.jipipe.extensions.parameters.library.primitives.FontFamilyParameter
 
AverageKeyValueThresholdStatisticsGenerator - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.statistics
 
AverageKeyValueThresholdStatisticsGenerator(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.statistics.AverageKeyValueThresholdStatisticsGenerator
 
AverageKeyValueThresholdStatisticsGenerator(AverageKeyValueThresholdStatisticsGenerator) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.statistics.AverageKeyValueThresholdStatisticsGenerator
 
AVICompression - Enum in org.hkijena.jipipe.extensions.imagejdatatypes.util
Wrapper around AVI_Writer compression
axes - Variable in class org.hkijena.jipipe.extensions.ilastik.utils.hdf5.DatasetDescription
Dimension axes.
axesGuessed - Variable in class org.hkijena.jipipe.extensions.ilastik.utils.hdf5.DatasetDescription
axesOf(ImgPlus<?>) - Static method in class org.hkijena.jipipe.extensions.ilastik.utils.ImgUtils
Extract axes from ImgPlus.
axisTags - Variable in class org.hkijena.jipipe.extensions.ilastik.utils.hdf5.DatasetEntryProvider.DatasetEntry
 

B

b0 - Variable in class org.hkijena.jipipe.ui.grapheditor.general.connections.RectangularLine
 
b1 - Variable in class org.hkijena.jipipe.ui.grapheditor.general.connections.RectangularLine
 
backup(JIPipeProjectWindow) - Method in class org.hkijena.jipipe.extensions.settings.BackupSettings
 
backupAll() - Method in class org.hkijena.jipipe.extensions.settings.BackupSettings
 
BackupManagerPanel - Class in org.hkijena.jipipe.ui.backups
 
BackupManagerPanel(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.ui.backups.BackupManagerPanel
 
BackupManagerTreeCellRenderer - Class in org.hkijena.jipipe.ui.backups
Renders the tree in JIPipeResultAlgorithmTree
BackupManagerTreeCellRenderer() - Constructor for class org.hkijena.jipipe.ui.backups.BackupManagerTreeCellRenderer
Creates new renderer
BackupSettings - Class in org.hkijena.jipipe.extensions.settings
 
BackupSettings() - Constructor for class org.hkijena.jipipe.extensions.settings.BackupSettings
 
Band(String, Ribbon.Action...) - Constructor for class org.hkijena.jipipe.ui.components.ribbon.Ribbon.Band
 
Band(String, List<Ribbon.Action>) - Constructor for class org.hkijena.jipipe.ui.components.ribbon.Ribbon.Band
 
Band(String, String, Ribbon.Action...) - Constructor for class org.hkijena.jipipe.ui.components.ribbon.Ribbon.Band
 
Band(String, String, List<Ribbon.Action>) - Constructor for class org.hkijena.jipipe.ui.components.ribbon.Ribbon.Band
 
BarBoxAndWhiskerCategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes
A box and whisker plot Series table columns: Value (Double), Category (String), Group (String) Multiple series: Yes
BarBoxAndWhiskerCategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BarBoxAndWhiskerCategoryPlotData
Creates a new instance
BarBoxAndWhiskerCategoryPlotData(BarBoxAndWhiskerCategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BarBoxAndWhiskerCategoryPlotData
Creates a copy
BarCategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes
A bar category plot Series table columns: Value (Double), Category (String), Group (String) Multiple series: No
BarCategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BarCategoryPlotData
Creates a new instance
BarCategoryPlotData(BarCategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BarCategoryPlotData
Creates a copy
BarStatisticalCategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes
A statistical bar category plot Series table columns: Value (Double), Category (String), Group (String) Multiple series: No
BarStatisticalCategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BarStatisticalCategoryPlotData
Creates a new instance
BarStatisticalCategoryPlotData(BarStatisticalCategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BarStatisticalCategoryPlotData
Creates a copy
base64ToImage(String) - Static method in class org.hkijena.jipipe.utils.BufferedImageUtils
 
base64ToObject(String) - Static method in class org.hkijena.jipipe.utils.SerializationUtils
Deserializes a Java object from its binary representation (as base64 string)
BaseDirectoryChangedEvent(Object, Path) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraphNode.BaseDirectoryChangedEvent
 
BaseDirectoryChangedEventEmitter() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraphNode.BaseDirectoryChangedEventEmitter
 
BasicMinicondaEnvPythonInstaller - Class in org.hkijena.jipipe.extensions.python.installers
 
BasicMinicondaEnvPythonInstaller(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.python.installers.BasicMinicondaEnvPythonInstaller
 
BasicMinicondaEnvPythonInstaller.Configuration - Class in org.hkijena.jipipe.extensions.python.installers
 
BasicPortableEnvPythonInstaller - Class in org.hkijena.jipipe.extensions.python.installers
 
BasicPortableEnvPythonInstaller(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.python.installers.BasicPortableEnvPythonInstaller
 
BasicPortableEnvPythonInstaller.Configuration - Class in org.hkijena.jipipe.extensions.python.installers
 
BatchAssistantPlugin - Class in org.hkijena.jipipe.extensions.batchassistant
 
BatchAssistantPlugin() - Constructor for class org.hkijena.jipipe.extensions.batchassistant.BatchAssistantPlugin
 
BatchIndexCellRenderer() - Constructor for class org.hkijena.jipipe.ui.batchassistant.DataBatchAssistantDataTableUI.BatchIndexCellRenderer
 
BeforeAddParameterEvent(JIPipeDynamicParameterCollection, JIPipeMutableParameterAccess) - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection.BeforeAddParameterEvent
 
BeforeAddParameterEventEmitter() - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection.BeforeAddParameterEventEmitter
 
beforeDraw(int, int, int) - Method in class org.hkijena.jipipe.extensions.imageviewer.JIPipeImageViewerPlugin2D
Called before draw is called
beforeDraw(int, int, int) - Method in class org.hkijena.jipipe.extensions.imageviewer.plugins2d.CalibrationPlugin2D
 
beforeDraw(int, int, int) - Method in class org.hkijena.jipipe.extensions.imageviewer.plugins2d.LUTManagerPlugin2D
 
beforeSetRow() - Method in class org.hkijena.jipipe.extensions.ijtrackmate.display.algorithms.CachedTrackmateAlgorithmViewerWindow
 
beforeSetRow() - Method in class org.hkijena.jipipe.extensions.ijtrackmate.display.trackscheme.TrackSchemeCachedDataViewerWindow
 
beforeSetRow() - Method in class org.hkijena.jipipe.extensions.imageviewer.JIPipeImageViewerCacheDataViewerWindow
 
beforeSetRow() - Method in class org.hkijena.jipipe.extensions.multiparameters.datatypes.CachedParametersDataViewerWindow
 
beforeSetRow() - Method in class org.hkijena.jipipe.extensions.plots.CachedPlotViewerWindow
 
beforeSetRow() - Method in class org.hkijena.jipipe.extensions.strings.CachedTextViewerWindow
 
beforeSetRow() - Method in class org.hkijena.jipipe.extensions.tables.display.CachedTableViewerWindow
 
beforeSetRow() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataViewerWindow
Called before the data row is changed
beginModificationBlock() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
Halts all JIPipeParameterCollection.ParameterStructureChangedEvent until endModificationBlock() is called.
Bernsen(ImageProcessor, int, double, boolean) - Static method in class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.threshold.local.BernsenLocalAutoThreshold2DAlgorithm
 
BernsenLocalAutoThreshold2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.threshold.local
Segmenter node that thresholds via an auto threshold Based on code from Auto_Local_Threshold
BernsenLocalAutoThreshold2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.threshold.local.BernsenLocalAutoThreshold2DAlgorithm
 
BernsenLocalAutoThreshold2DAlgorithm(BernsenLocalAutoThreshold2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.threshold.local.BernsenLocalAutoThreshold2DAlgorithm
Copies the algorithm
BinarizeAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.binary
 
BinarizeAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.binary.BinarizeAlgorithm
Instantiates a new node type.
BinarizeAlgorithm(BinarizeAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.binary.BinarizeAlgorithm
Instantiates a new node type.
binaryFileToObject(Path) - Static method in class org.hkijena.jipipe.utils.SerializationUtils
Deserializes a Java object from a binary file via ObjectInputStream
BioFormatsConfigTool - Class in org.hkijena.jipipe.extensions.imagejdatatypes.tools
 
BioFormatsConfigTool(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.tools.BioFormatsConfigTool
Creates a new instance
BioFormatsExporter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms
Deprecated.
BioFormatsExporter(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.BioFormatsExporter
Deprecated.
 
BioFormatsExporter(BioFormatsExporter) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.BioFormatsExporter
Deprecated.
 
BioFormatsExporter2 - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms
 
BioFormatsExporter2(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.BioFormatsExporter2
 
BioFormatsExporter2(BioFormatsExporter2) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.BioFormatsExporter2
 
BioFormatsImporter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.datasources
BioFormats importer wrapper
BioFormatsImporter(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.datasources.BioFormatsImporter
 
BioFormatsImporter(BioFormatsImporter) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.datasources.BioFormatsImporter
Copies the algorithm
BitDepth - Enum in org.hkijena.jipipe.extensions.imagejdatatypes.util
Enum of ImageJ bit depths
BitDepthEnumItemInfo - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util
 
BitDepthEnumItemInfo() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.BitDepthEnumItemInfo
 
bitDepthToImagePlusDataType(int) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Returns the general ImagePlusData class for a bit depth
BitwiseLogicalOperationAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.binary
 
BitwiseLogicalOperationAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.binary.BitwiseLogicalOperationAlgorithm
 
BitwiseLogicalOperationAlgorithm(BitwiseLogicalOperationAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.binary.BitwiseLogicalOperationAlgorithm
 
BLACK_TRANSPARENT - Static variable in class org.hkijena.jipipe.utils.ColorUtils
 
BlackToWhiteTrackBackground - Class in org.hkijena.jipipe.extensions.imagejalgorithms.utils
 
BlackToWhiteTrackBackground() - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.utils.BlackToWhiteTrackBackground
 
blend(ColorProcessor, ColorProcessor, double) - Method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageBlendMode
Blends the top image onto the bottom image
blend(int, int, double) - Method in enum org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageBlendMode
Applies blending on a single RGB pixel
BlendImagesAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.color
 
BlendImagesAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.color.BlendImagesAlgorithm
 
BlendImagesAlgorithm(BlendImagesAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.color.BlendImagesAlgorithm
 
Block(long[], int[]) - Constructor for class org.hkijena.jipipe.extensions.ilastik.utils.GridCoordinates.Block
 
blockSize(long[]) - Static method in class org.hkijena.jipipe.extensions.ilastik.utils.Hdf5Utils
 
bold - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
BOOKMARK_SHADOW_BORDER - Static variable in class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphCanvasUI
 
BookmarkedNodeListCellRenderer - Class in org.hkijena.jipipe.ui.bookmarks
Renderer for JIPipeGraphNode
BookmarkedNodeListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.bookmarks.BookmarkedNodeListCellRenderer
Creates a new renderer
BookmarkListPanel - Class in org.hkijena.jipipe.ui.bookmarks
 
BookmarkListPanel(JIPipeWorkbench, JIPipeGraph, JIPipeGraphEditorUI, Set<JIPipeGraphNode>) - Constructor for class org.hkijena.jipipe.ui.bookmarks.BookmarkListPanel
 
BooleanComboBoxItemRenderer(String, String) - Constructor for class org.hkijena.jipipe.extensions.parameters.library.primitives.BooleanParameterEditorUI.BooleanComboBoxItemRenderer
 
BooleanFalseConstant - Class in org.hkijena.jipipe.extensions.expressions.constants
 
BooleanFalseConstant() - Constructor for class org.hkijena.jipipe.extensions.expressions.constants.BooleanFalseConstant
 
BooleanFormData - Class in org.hkijena.jipipe.extensions.forms.datatypes
 
BooleanFormData() - Constructor for class org.hkijena.jipipe.extensions.forms.datatypes.BooleanFormData
 
BooleanFormData(BooleanFormData) - Constructor for class org.hkijena.jipipe.extensions.forms.datatypes.BooleanFormData
 
BooleanFormGeneratorAlgorithm - Class in org.hkijena.jipipe.extensions.forms.algorithms.generators
 
BooleanFormGeneratorAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.forms.algorithms.generators.BooleanFormGeneratorAlgorithm
 
BooleanFormGeneratorAlgorithm(BooleanFormGeneratorAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.forms.algorithms.generators.BooleanFormGeneratorAlgorithm
 
BooleanParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.library.primitives
Parameter editor for boolean data
BooleanParameterEditorUI(JIPipeWorkbench, JIPipeParameterTree, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.library.primitives.BooleanParameterEditorUI
 
BooleanParameterEditorUI.BooleanComboBoxItemRenderer - Class in org.hkijena.jipipe.extensions.parameters.library.primitives
 
BooleanParameterImageJ2ModuleInput - Class in org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives
 
BooleanParameterImageJ2ModuleInput() - Constructor for class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.BooleanParameterImageJ2ModuleInput
 
BooleanParameterImageJ2ModuleOutput - Class in org.hkijena.jipipe.extensions.imagej2.io.parameters.output.primitives
 
BooleanParameterImageJ2ModuleOutput() - Constructor for class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.primitives.BooleanParameterImageJ2ModuleOutput
 
BooleanParameterSettings - Annotation Type in org.hkijena.jipipe.extensions.parameters.library.primitives
 
BooleanParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.library.primitives
Info for Boolean
BooleanParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.library.primitives.BooleanParameterTypeInfo
 
BooleanPrimitiveParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.library.primitives
Info for Boolean
BooleanPrimitiveParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.library.primitives.BooleanPrimitiveParameterTypeInfo
 
BooleanTrueConstant - Class in org.hkijena.jipipe.extensions.expressions.constants
 
BooleanTrueConstant() - Constructor for class org.hkijena.jipipe.extensions.expressions.constants.BooleanTrueConstant
 
BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory
 
BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory
 
BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.ExportNodeTypeCategory
 
BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory
 
BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.GraphAnnotationsNodeTypeCategory
 
BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.ImageJNodeTypeCategory
 
BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory
 
BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory
 
BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory
 
BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory
 
BORDER_COLOR - Static variable in class org.hkijena.jipipe.extensions.ijfilaments.FilamentsNodeTypeCategory
 
BORDER_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory
 
BORDER_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory
 
BORDER_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.ExportNodeTypeCategory
 
BORDER_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory
 
BORDER_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.GraphAnnotationsNodeTypeCategory
 
BORDER_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.ImageJNodeTypeCategory
 
BORDER_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory
 
BORDER_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory
 
BORDER_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory
 
BORDER_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory
 
BORDER_COLOR_DARK - Static variable in class org.hkijena.jipipe.extensions.ijfilaments.FilamentsNodeTypeCategory
 
BorderImageJ2OutOfBoundsFactoryData - Class in org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds
 
BorderImageJ2OutOfBoundsFactoryData() - Constructor for class org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds.BorderImageJ2OutOfBoundsFactoryData
 
BorderImageJ2OutOfBoundsFactoryData(OutOfBoundsPeriodicFactory<?, ?>) - Constructor for class org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds.BorderImageJ2OutOfBoundsFactoryData
 
BorderImageJ2OutOfBoundsFactoryData(BorderImageJ2OutOfBoundsFactoryData) - Constructor for class org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds.BorderImageJ2OutOfBoundsFactoryData
 
BorderMode - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.transform
 
BoxAndWhiskerCategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes
Contains data for box and whisker category plots category plots.
BoxAndWhiskerCategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BoxAndWhiskerCategoryPlotData
Creates a new instance
BoxAndWhiskerCategoryPlotData(BoxAndWhiskerCategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BoxAndWhiskerCategoryPlotData
Creates a copy
BoxFilter2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.blur
Wrapper around ImageProcessor
BoxFilter2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.blur.BoxFilter2DAlgorithm
Instantiates a new node type.
BoxFilter2DAlgorithm(BoxFilter2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.blur.BoxFilter2DAlgorithm
Instantiates a new node type.
BoxFilter3DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.blur
Wrapper around GaussianBlur
BoxFilter3DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.blur.BoxFilter3DAlgorithm
Instantiates a new node type.
BoxFilter3DAlgorithm(BoxFilter3DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.blur.BoxFilter3DAlgorithm
Instantiates a new node type.
boxHorizontal(Component...) - Static method in class org.hkijena.jipipe.utils.UIUtils
 
boxVertical(Component...) - Static method in class org.hkijena.jipipe.utils.UIUtils
 
branch(String) - Method in interface org.hkijena.jipipe.api.data.context.JIPipeDataContext
Returns a new context that contains the current one as predecessor
branch(JIPipeGraphNode) - Method in interface org.hkijena.jipipe.api.data.context.JIPipeDataContext
Returns a new context that contains the current one as predecessor
BRANCHES_TABLE_OUTPUT_SLOT - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.analyze.AnalyzeSkeleton2D3DAlgorithm
 
BrightSpotsSegmentation2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.threshold
Applies Bright spots segmentation
BrightSpotsSegmentation2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.threshold.BrightSpotsSegmentation2DAlgorithm
 
BrightSpotsSegmentation2DAlgorithm(BrightSpotsSegmentation2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.threshold.BrightSpotsSegmentation2DAlgorithm
Copies the algorithm
BufferedImageUtils - Class in org.hkijena.jipipe.utils
 
BufferedImageUtils() - Constructor for class org.hkijena.jipipe.utils.BufferedImageUtils
 
build() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo.Deserializer.Builder
 
build() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
 
build(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.iterationstep.JIPipeMultiIterationStepGenerator
 
build() - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder
Returns the finished object Requires following properties to be set: source, field class, getter, setter
build() - Method in class org.hkijena.jipipe.extensions.imp.utils.ImpImageDataBuilder
 
build() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.RowBuilder
Does nothing
builder() - Static method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo.Deserializer
 
Builder() - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo.Deserializer.Builder
 
builder() - Static method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
builder() - Static method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess
Creates a new builder
Builder() - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder
 
buildFor(Path, JIPipeExpressionVariablesMap) - Static method in class org.hkijena.jipipe.extensions.expressions.variables.PathFilterExpressionParameterVariablesInfo
 
buildSeries() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder
Generates a series
buildTokens(List<String>) - Static method in class org.hkijena.jipipe.api.nodes.database.JIPipeNodeDatabase
Converts a list of texts into word tokens
buildVariablesSet(ImagePlus, JIPipeExpressionVariablesMap) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.ImageQueryExpressionVariablesInfo
Builds the proper variable set for an image
BusyCursor - Class in org.hkijena.jipipe.utils.ui
A cursor for a component to indicate that some process is running
BusyCursor(Component) - Constructor for class org.hkijena.jipipe.utils.ui.BusyCursor
 
ByteArrayParameterImageJ2ModuleInput - Class in org.hkijena.jipipe.extensions.imagej2.io.parameters.input.arrays
 
ByteArrayParameterImageJ2ModuleInput() - Constructor for class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.arrays.ByteArrayParameterImageJ2ModuleInput
 
ByteConstantValueImageJ2OutOfBoundsFactoryData - Class in org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds.constant
 
ByteConstantValueImageJ2OutOfBoundsFactoryData() - Constructor for class org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds.constant.ByteConstantValueImageJ2OutOfBoundsFactoryData
 
ByteConstantValueImageJ2OutOfBoundsFactoryData(OutOfBoundsConstantValueFactory<?, ?>) - Constructor for class org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds.constant.ByteConstantValueImageJ2OutOfBoundsFactoryData
 
ByteConstantValueImageJ2OutOfBoundsFactoryData(ByteConstantValueImageJ2OutOfBoundsFactoryData) - Constructor for class org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds.constant.ByteConstantValueImageJ2OutOfBoundsFactoryData
 
ByteParameterImageJ2ModuleInput - Class in org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives
 
ByteParameterImageJ2ModuleInput() - Constructor for class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.ByteParameterImageJ2ModuleInput
 
ByteParameterImageJ2ModuleOutput - Class in org.hkijena.jipipe.extensions.imagej2.io.parameters.output.primitives
 
ByteParameterImageJ2ModuleOutput() - Constructor for class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.primitives.ByteParameterImageJ2ModuleOutput
 
ByteParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.library.primitives
Info for Byte
ByteParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.library.primitives.ByteParameterTypeInfo
 
BytePrimitiveParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.library.primitives
Info for Byte
BytePrimitiveParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.library.primitives.BytePrimitiveParameterTypeInfo
 

C

CacheAwareOpenResultsTableInJIPipeDataOperation - Class in org.hkijena.jipipe.extensions.tables.display
 
CacheAwareOpenResultsTableInJIPipeDataOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.display.CacheAwareOpenResultsTableInJIPipeDataOperation
 
CachedFilamentsDataViewerWindow - Class in org.hkijena.jipipe.extensions.ijfilaments.display
 
CachedFilamentsDataViewerWindow(JIPipeWorkbench, JIPipeDataTableDataSource, String) - Constructor for class org.hkijena.jipipe.extensions.ijfilaments.display.CachedFilamentsDataViewerWindow
 
CachedImagePlusDataViewerWindow - Class in org.hkijena.jipipe.extensions.imagejdatatypes.display
 
CachedImagePlusDataViewerWindow(JIPipeWorkbench, JIPipeDataTableDataSource, String) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.display.CachedImagePlusDataViewerWindow
 
CachedImagePlusDataViewerWindow.CustomDataLoader - Class in org.hkijena.jipipe.extensions.imagejdatatypes.display
Used to override the data loading behavior
CachedOutputDataSlotListCellRenderer - Class in org.hkijena.jipipe.ui.cache.renderers
Renders a JIPipeDataSlot
CachedOutputDataSlotListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.cache.renderers.CachedOutputDataSlotListCellRenderer
Creates a new renderer
CachedParametersDataViewerWindow - Class in org.hkijena.jipipe.extensions.multiparameters.datatypes
 
CachedParametersDataViewerWindow(JIPipeWorkbench, JIPipeDataTableDataSource, String) - Constructor for class org.hkijena.jipipe.extensions.multiparameters.datatypes.CachedParametersDataViewerWindow
 
CachedPlotViewerWindow - Class in org.hkijena.jipipe.extensions.plots
 
CachedPlotViewerWindow(JIPipeWorkbench, JIPipeDataTableDataSource, String, boolean) - Constructor for class org.hkijena.jipipe.extensions.plots.CachedPlotViewerWindow
 
CachedROIList3DDataViewerWindow - Class in org.hkijena.jipipe.extensions.ij3d.display
 
CachedROIList3DDataViewerWindow(JIPipeWorkbench, JIPipeDataTableDataSource, String) - Constructor for class org.hkijena.jipipe.extensions.ij3d.display.CachedROIList3DDataViewerWindow
 
CachedROIListDataViewerWindow - Class in org.hkijena.jipipe.extensions.imagejdatatypes.display
 
CachedROIListDataViewerWindow(JIPipeWorkbench, JIPipeDataTableDataSource, String) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.display.CachedROIListDataViewerWindow
 
CachedSpotCollectionDataViewerWindow - Class in org.hkijena.jipipe.extensions.ijtrackmate.display.spots
 
CachedSpotCollectionDataViewerWindow(JIPipeWorkbench, JIPipeDataTableDataSource, String) - Constructor for class org.hkijena.jipipe.extensions.ijtrackmate.display.spots.CachedSpotCollectionDataViewerWindow
 
CachedTableViewerWindow - Class in org.hkijena.jipipe.extensions.tables.display
 
CachedTableViewerWindow(JIPipeWorkbench, JIPipeDataTableDataSource, String, boolean) - Constructor for class org.hkijena.jipipe.extensions.tables.display.CachedTableViewerWindow
 
CachedTextViewerWindow - Class in org.hkijena.jipipe.extensions.strings
Cached viewer for
CachedTextViewerWindow(JIPipeWorkbench, JIPipeDataTableDataSource, String, boolean) - Constructor for class org.hkijena.jipipe.extensions.strings.CachedTextViewerWindow
 
CachedTrackmateAlgorithmViewerWindow - Class in org.hkijena.jipipe.extensions.ijtrackmate.display.algorithms
Cached viewer for
CachedTrackmateAlgorithmViewerWindow(JIPipeWorkbench, JIPipeDataTableDataSource, String, boolean) - Constructor for class org.hkijena.jipipe.extensions.ijtrackmate.display.algorithms.CachedTrackmateAlgorithmViewerWindow
 
CachedTracksCollectionDataViewerWindow - Class in org.hkijena.jipipe.extensions.ijtrackmate.display.tracks
 
CachedTracksCollectionDataViewerWindow(JIPipeWorkbench, JIPipeDataTableDataSource, String) - Constructor for class org.hkijena.jipipe.extensions.ijtrackmate.display.tracks.CachedTracksCollectionDataViewerWindow
 
calculateCalibration(ImageProcessor, ImageJCalibrationMode, double, double, ImageStatistics) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
 
calculateCalibration() - Method in class org.hkijena.jipipe.extensions.imageviewer.plugins3d.CalibrationPlugin3D
 
calculateMaxTabHeight(int) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
 
calculateMinimumBoundingRectangle(Roi) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Method based on fitMinRectangle
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdFunction
 
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdHuang
 
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdImageJDefault
 
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdImageJIsoData
 
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdIntermodes
 
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdIsoData
 
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdLi
 
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdMaxEntropy
 
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdMean
 
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdMinError
 
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdMinimum
 
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdMoments
 
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdOtsu
 
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdPercentile
 
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdRenyi
 
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdShanbhag
 
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdTriangle
 
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdYen
 
calibrate(ImageProcessor, ImageJCalibrationMode, double, double, ImageStatistics) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
 
calibrate(ImagePlus, ImageJCalibrationMode, double, double) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Calibrates the image (all processors).
calibrateAxis(ValueAxis, OptionalDoubleParameter, OptionalDoubleParameter) - Static method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
Calibrates the axes of a plot, setting min and max values
CalibrationParameters - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util
 
CalibrationParameters() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.CalibrationParameters
 
CalibrationParameters(CalibrationParameters) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.CalibrationParameters
 
CalibrationPlugin2D - Class in org.hkijena.jipipe.extensions.imageviewer.plugins2d
 
CalibrationPlugin2D(JIPipeImageViewer) - Constructor for class org.hkijena.jipipe.extensions.imageviewer.plugins2d.CalibrationPlugin2D
 
CalibrationPlugin3D - Class in org.hkijena.jipipe.extensions.imageviewer.plugins3d
 
CalibrationPlugin3D(JIPipeImageViewer) - Constructor for class org.hkijena.jipipe.extensions.imageviewer.plugins3d.CalibrationPlugin3D
 
call(JIPipeCache.ClearedEventListener, JIPipeCache.ClearedEvent) - Method in class org.hkijena.jipipe.api.cache.JIPipeCache.ClearedEventEmitter
 
call(JIPipeCache.ModifiedEventListener, JIPipeCache.ModifiedEvent) - Method in class org.hkijena.jipipe.api.cache.JIPipeCache.ModifiedEventEmitter
 
call(JIPipeCache.StoredEventListener, JIPipeCache.StoredEvent) - Method in class org.hkijena.jipipe.api.cache.JIPipeCache.StoredEventEmitter
 
call(JIPipeSlotConfiguration.SlotConfigurationChangedEventListener, JIPipeSlotConfiguration.SlotConfigurationChangedEvent) - Method in class org.hkijena.jipipe.api.data.JIPipeSlotConfiguration.SlotConfigurationChangedEventEmitter
 
call(JIPipeThumbnailGenerationQueue.ThumbnailGeneratedEventListener, JIPipeThumbnailGenerationQueue.ThumbnailGeneratedEvent) - Method in class org.hkijena.jipipe.api.data.thumbnails.JIPipeThumbnailGenerationQueue.ThumbnailGeneratedEventEmitter
 
call(Listener, Event) - Method in class org.hkijena.jipipe.api.events.JIPipeEventEmitter
 
call(JIPipeEventEmitter<Event, Listener>, Event) - Method in class org.hkijena.jipipe.api.events.JIPipeEventEmitter.LambdaSubscriber
 
call(JIPipeEventEmitter<Event, Listener>, Event) - Method in class org.hkijena.jipipe.api.events.JIPipeEventEmitter.StrongObjectSubscriber
 
call(JIPipeEventEmitter<Event, Listener>, Event) - Method in interface org.hkijena.jipipe.api.events.JIPipeEventEmitter.Subscriber
 
call(JIPipeEventEmitter<Event, Listener>, Event) - Method in class org.hkijena.jipipe.api.events.JIPipeEventEmitter.WeakObjectSubscriber
 
call(ParameterReferencesChangedEventListener, ParameterReferencesChangedEvent) - Method in class org.hkijena.jipipe.api.grouping.events.ParameterReferencesChangedEventEmitter
 
call(JIPipeHistoryJournal.HistoryChangedEventListener, JIPipeHistoryJournal.HistoryChangedEvent) - Method in class org.hkijena.jipipe.api.history.JIPipeHistoryJournal.HistoryChangedEventEmitter
 
call(JIPipeProgressInfo.StatusUpdatedEventListener, JIPipeProgressInfo.StatusUpdatedEvent) - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo.StatusUpdatedEventEmitter
 
call(JIPipeProject.CompartmentAddedEventListener, JIPipeProject.CompartmentAddedEvent) - Method in class org.hkijena.jipipe.api.JIPipeProject.CompartmentAddedEventEmitter
 
call(JIPipeProject.CompartmentRemovedEventListener, JIPipeProject.CompartmentRemovedEvent) - Method in class org.hkijena.jipipe.api.JIPipeProject.CompartmentRemovedEventEmitter
 
call(JIPipeRunnable.EnqeuedEventListener, JIPipeRunnable.EnqueuedEvent) - Method in class org.hkijena.jipipe.api.JIPipeRunnable.EnqueuedEventEmitter
 
call(JIPipeRunnable.FinishedEventListener, JIPipeRunnable.FinishedEvent) - Method in class org.hkijena.jipipe.api.JIPipeRunnable.FinishedEventEmitter
 
call(JIPipeRunnable.InterruptedEventListener, JIPipeRunnable.InterruptedEvent) - Method in class org.hkijena.jipipe.api.JIPipeRunnable.InterruptedEventEmitter
 
call(JIPipeRunnable.ProgressEventListener, JIPipeRunnable.ProgressEvent) - Method in class org.hkijena.jipipe.api.JIPipeRunnable.ProgressEventEmitter
 
call(JIPipeRunnable.StartedEventListener, JIPipeRunnable.StartedEvent) - Method in class org.hkijena.jipipe.api.JIPipeRunnable.StartedEventEmitter
 
call(JIPipeGraph.GraphChangedEventListener, JIPipeGraph.GraphChangedEvent) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph.GraphChangedEventEmitter
 
call(JIPipeGraph.NodeAddedEventListener, JIPipeGraph.NodeAddedEvent) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph.NodeAddedEventEmitter
 
call(JIPipeGraph.NodeConnectedEventListener, JIPipeGraph.NodeConnectedEvent) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph.NodeConnectedEventEmitter
 
call(JIPipeGraph.NodeDisconnectedEventListener, JIPipeGraph.NodeDisconnectedEvent) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph.NodeDisconnectedEventEmitter
 
call(JIPipeGraph.NodeRemovedEventListener, JIPipeGraph.NodeRemovedEvent) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph.NodeRemovedEventEmitter
 
call(JIPipeGraphNode.BaseDirectoryChangedEventListener, JIPipeGraphNode.BaseDirectoryChangedEvent) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode.BaseDirectoryChangedEventEmitter
 
call(JIPipeGraphNode.NodeSlotsChangedEventListener, JIPipeGraphNode.NodeSlotsChangedEvent) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode.NodeSlotsChangedEventEmitter
 
call(JIPipeNotificationInbox.DismissedEventListener, JIPipeNotificationInbox.DismissedEvent) - Method in class org.hkijena.jipipe.api.notifications.JIPipeNotificationInbox.DismissedEventEmitter
 
call(JIPipeNotificationInbox.PushedEventListener, JIPipeNotificationInbox.PushedEvent) - Method in class org.hkijena.jipipe.api.notifications.JIPipeNotificationInbox.PushedEventEmitter
 
call(JIPipeNotificationInbox.UpdatedEventListener, JIPipeNotificationInbox.UpdatedEvent) - Method in class org.hkijena.jipipe.api.notifications.JIPipeNotificationInbox.UpdatedEventEmitter
 
call(JIPipeDynamicParameterCollection.BeforeAddParameterEventListener, JIPipeDynamicParameterCollection.BeforeAddParameterEvent) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection.BeforeAddParameterEventEmitter
 
call(JIPipeParameterCollection.ParameterChangedEventListener, JIPipeParameterCollection.ParameterChangedEvent) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterCollection.ParameterChangedEventEmitter
 
call(JIPipeParameterCollection.ParameterStructureChangedEventListener, JIPipeParameterCollection.ParameterStructureChangedEvent) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterCollection.ParameterStructureChangedEventEmitter
 
call(JIPipeParameterCollection.ParameterUIChangedEventListener, JIPipeParameterCollection.ParameterUIChangedEvent) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterCollection.ParameterUIChangedEventEmitter
 
call(JIPipeExtensionRegistry.ScheduledActivateExtensionEventListener, JIPipeExtensionRegistry.ScheduledActivateExtensionEvent) - Method in class org.hkijena.jipipe.api.registries.JIPipeExtensionRegistry.ScheduledActivateExtensionEventEmitter
 
call(JIPipeExtensionRegistry.ScheduledDeactivateExtensionEventListener, JIPipeExtensionRegistry.ScheduledDeactivateExtensionEvent) - Method in class org.hkijena.jipipe.api.registries.JIPipeExtensionRegistry.ScheduledDeactivateExtensionEventEmitter
 
call(JIPipeProjectTemplateRegistry.TemplatesUpdatedEventListener, JIPipeProjectTemplateRegistry.TemplatesUpdatedEvent) - Method in class org.hkijena.jipipe.api.registries.JIPipeProjectTemplateRegistry.TemplatesUpdatedEventEmitter
 
call(JIPipeGraphRunGCGraph.GCEventListener, JIPipeGraphRunGCGraph.GCEvent) - Method in class org.hkijena.jipipe.api.run.JIPipeGraphRunGCGraph.GCEventEmitter
 
call(MaskDrawerPlugin2D.MaskChangedEventListener, MaskDrawerPlugin2D.MaskChangedEvent) - Method in class org.hkijena.jipipe.extensions.imageviewer.plugins2d.maskdrawer.MaskDrawerPlugin2D.MaskChangedEventEmitter
 
call(ImageViewerPanelCanvas2D.PixelHoverEventListener, ImageViewerPanelCanvas2D.PixelHoverEvent) - Method in class org.hkijena.jipipe.extensions.imageviewer.utils.viewer2d.ImageViewerPanelCanvas2D.PixelHoverEventEmitter
 
call(ImageViewerPanelCanvas2D.ToolChangedEventListener, ImageViewerPanelCanvas2D.ToolChangedEvent) - Method in class org.hkijena.jipipe.extensions.imageviewer.utils.viewer2d.ImageViewerPanelCanvas2D.ToolChangedEventEmitter
 
call(NodeTemplatesRefreshedEventListener, NodeTemplatesRefreshedEvent) - Method in class org.hkijena.jipipe.extensions.nodetemplate.NodeTemplatesRefreshedEventEmitter
 
call(ParameterTable.ModelChangedEventListener, ParameterTable.ModelChangedEvent) - Method in class org.hkijena.jipipe.extensions.parameters.library.table.ParameterTable.ModelChangedEventEmitter
 
call(JIPipeService.DatatypeRegisteredEventListener, JIPipeService.DatatypeRegisteredEvent) - Method in class org.hkijena.jipipe.JIPipeService.DatatypeRegisteredEventEmitter
 
call(JIPipeService.ExtensionContentAddedEventListener, JIPipeService.ExtensionContentAddedEvent) - Method in class org.hkijena.jipipe.JIPipeService.ExtensionContentAddedEventEmitter
 
call(JIPipeService.ExtensionContentRemovedEventListener, JIPipeService.ExtensionContentRemovedEvent) - Method in class org.hkijena.jipipe.JIPipeService.ExtensionContentRemovedEventEmitter
 
call(JIPipeService.ExtensionDiscoveredEventListener, JIPipeService.ExtensionDiscoveredEvent) - Method in class org.hkijena.jipipe.JIPipeService.ExtensionDiscoveredEventEmitter
 
call(JIPipeService.ExtensionRegisteredEventListener, JIPipeService.ExtensionRegisteredEvent) - Method in class org.hkijena.jipipe.JIPipeService.ExtensionRegisteredEventEmitter
 
call(JIPipeService.NodeInfoRegisteredEventListener, JIPipeService.NodeInfoRegisteredEvent) - Method in class org.hkijena.jipipe.JIPipeService.NodeInfoRegisteredEventEmitter
 
call(JIPipeAlgorithmCacheBrowserOutputSelectorUI.OutputSelectedEventListener, JIPipeAlgorithmCacheBrowserOutputSelectorUI.OutputSelectedEvent) - Method in class org.hkijena.jipipe.ui.cache.JIPipeAlgorithmCacheBrowserOutputSelectorUI.OutputSelectedEventEmitter
 
call(ColorChooserButton.ColorChosenEventListener, ColorChooserButton.ColorChosenEvent) - Method in class org.hkijena.jipipe.ui.components.ColorChooserButton.ColorChosenEventEmitter
 
call(FormPanel.HoverHelpEventListener, FormPanel.HoverHelpEvent) - Method in class org.hkijena.jipipe.ui.components.FormPanel.HoverHelpEventEmitter
 
call(JIPipeDataTypePicker.DataTypeDeselectedEventListener, JIPipeDataTypePicker.DataTypeDeselectedEvent) - Method in class org.hkijena.jipipe.ui.components.pickers.JIPipeDataTypePicker.DataTypeDeselectedEventEmitter
 
call(JIPipeDataTypePicker.DataTypeSelectedEventListener, JIPipeDataTypePicker.DataTypeSelectedEvent) - Method in class org.hkijena.jipipe.ui.components.pickers.JIPipeDataTypePicker.DataTypeSelectedEventEmitter
 
call(JIPipeDataTypePicker.SelectedDataTypesChangedEventListener, JIPipeDataTypePicker.SelectedDataTypesChangedEvent) - Method in class org.hkijena.jipipe.ui.components.pickers.JIPipeDataTypePicker.SelectedDataTypesChangedEventEmitter
 
call(JIPipeNodeInfoPicker.NodeInfoDeselectedEventListener, JIPipeNodeInfoPicker.NodeInfoDeselectedEvent) - Method in class org.hkijena.jipipe.ui.components.pickers.JIPipeNodeInfoPicker.NodeInfoDeselectedEventEmitter
 
call(JIPipeNodeInfoPicker.NodeInfoSelectedEventListener, JIPipeNodeInfoPicker.NodeInfoSelectedEvent) - Method in class org.hkijena.jipipe.ui.components.pickers.JIPipeNodeInfoPicker.NodeInfoSelectedEventEmitter
 
call(JIPipeNodeInfoPicker.SelectedInfosChangedEventListener, JIPipeNodeInfoPicker.SelectedInfosChangedEvent) - Method in class org.hkijena.jipipe.ui.components.pickers.JIPipeNodeInfoPicker.SelectedInfosChangedEventEmitter
 
call(DocumentTabPane.TabRenamedEventListener, DocumentTabPane.TabRenamedEvent) - Method in class org.hkijena.jipipe.ui.components.tabs.DocumentTabPane.TabRenamedEventEmitter
 
call(ZoomViewPort.ZoomChangedEventListener, ZoomViewPort.ZoomChangedEvent) - Method in class org.hkijena.jipipe.ui.components.ZoomViewPort.ZoomChangedEventEmitter
 
call(RecentProjectsListPanel.ProjectOpenedEventListener, RecentProjectsListPanel.ProjectOpenedEvent) - Method in class org.hkijena.jipipe.ui.documentation.RecentProjectsListPanel.ProjectOpenedEventEmitter
 
call(WindowClosedEventListener, WindowClosedEvent) - Method in class org.hkijena.jipipe.ui.events.WindowClosedEventEmitter
 
call(WindowOpenedEventListener, WindowOpenedEvent) - Method in class org.hkijena.jipipe.ui.events.WindowOpenedEventEmitter
 
call(JIPipeModernPluginManager.UpdateSitesFailedEventListener, JIPipeModernPluginManager.UpdateSitesFailedEvent) - Method in class org.hkijena.jipipe.ui.extensions.JIPipeModernPluginManager.UpdateSitesFailedEventEmitter
 
call(JIPipeModernPluginManager.UpdateSitesReadyEventListener, JIPipeModernPluginManager.UpdateSitesReadyEvent) - Method in class org.hkijena.jipipe.ui.extensions.JIPipeModernPluginManager.UpdateSitesReadyEventEmitter
 
call(JIPipeGraphCanvasUI.GraphCanvasUpdatedEventListener, JIPipeGraphCanvasUI.GraphCanvasUpdatedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphCanvasUI.GraphCanvasUpdatedEventEmitter
 
call(JIPipeGraphCanvasUI.NodeSelectionChangedEventListener, JIPipeGraphCanvasUI.NodeSelectionChangedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphCanvasUI.NodeSelectionChangedEventEmitter
 
call(JIPipeGraphCanvasUI.NodeUISelectedEventListener, JIPipeGraphCanvasUI.NodeUISelectedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphCanvasUI.NodeUISelectedEventEmitter
 
call(JIPipeGraphNodeUI.DefaultNodeUIActionRequestedEventListener, JIPipeGraphNodeUI.DefaultNodeUIActionRequestedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.general.nodeui.JIPipeGraphNodeUI.DefaultNodeUIActionRequestedEventEmitter
 
call(JIPipeGraphNodeUI.NodeUIActionRequestedEventListener, JIPipeGraphNodeUI.NodeUIActionRequestedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.general.nodeui.JIPipeGraphNodeUI.NodeUIActionRequestedEventEmitter
 
call(NodeDatabaseSearchBox.SelectedEventListener, NodeDatabaseSearchBox.SelectedEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.general.search.NodeDatabaseSearchBox.SelectedEventEmitter
 
call(JIPipeRunnableLogsCollection.LogClearedEventListener, JIPipeRunnableLogsCollection.LogClearedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnableLogsCollection.LogClearedEventEmitter
 
call(JIPipeRunnableLogsCollection.LogEntryAddedEventListener, JIPipeRunnableLogsCollection.LogEntryAddedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnableLogsCollection.LogEntryAddedEventEmitter
 
call(JIPipeRunnableLogsCollection.LogUpdatedEventListener, JIPipeRunnableLogsCollection.LogUpdatedEvent) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnableLogsCollection.LogUpdatedEventEmitter
 
call(ProcessUtils.RunCancellationWatchdog.CancelledEventListener, ProcessUtils.RunCancellationWatchdog.CancelledEvent) - Method in class org.hkijena.jipipe.utils.ProcessUtils.RunCancellationWatchdog.CancelledEventEmitter
 
call(MouseClickedEventListener, MouseClickedEvent) - Method in class org.hkijena.jipipe.utils.ui.events.MouseClickedEventEmitter
 
call(MouseDraggedEventListener, MouseDraggedEvent) - Method in class org.hkijena.jipipe.utils.ui.events.MouseDraggedEventEmitter
 
call(MouseEnteredEventListener, MouseEnteredEvent) - Method in class org.hkijena.jipipe.utils.ui.events.MouseEnteredEventEmitter
 
call(MouseExitedEventListener, MouseExitedEvent) - Method in class org.hkijena.jipipe.utils.ui.events.MouseExitedEventEmitter
 
call(MouseMovedEventListener, MouseMovedEvent) - Method in class org.hkijena.jipipe.utils.ui.events.MouseMovedEventEmitter
 
call(MousePressedEventListener, MousePressedEvent) - Method in class org.hkijena.jipipe.utils.ui.events.MousePressedEventEmitter
 
call(MouseReleasedEventListener, MouseReleasedEvent) - Method in class org.hkijena.jipipe.utils.ui.events.MouseReleasedEventEmitter
 
canActivate(JIPipeValidationReport, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.omero.OMEROPlugin
 
canActivate(JIPipeValidationReport, JIPipeProgressInfo) - Method in interface org.hkijena.jipipe.JIPipePlugin
Returns true if the extension can be activated.
canAddInputSlot() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
canAddInputSlot() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
canAddInputSlots() - Method in class org.hkijena.jipipe.api.nodes.database.CreateNewNodeByExampleDatabaseEntry
 
canAddInputSlots() - Method in class org.hkijena.jipipe.api.nodes.database.CreateNewNodeByInfoDatabaseEntry
 
canAddInputSlots() - Method in class org.hkijena.jipipe.api.nodes.database.ExistingCompartmentDatabaseEntry
 
canAddInputSlots() - Method in class org.hkijena.jipipe.api.nodes.database.ExistingPipelineNodeDatabaseEntry
 
canAddInputSlots() - Method in interface org.hkijena.jipipe.api.nodes.database.JIPipeNodeDatabaseEntry
 
canAddOrDeleteNodes(JIPipeWorkbench) - Static method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench
 
canAddOutputSlot() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
canAddOutputSlot() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
canAddOutputSlots() - Method in class org.hkijena.jipipe.api.nodes.database.CreateNewNodeByExampleDatabaseEntry
 
canAddOutputSlots() - Method in class org.hkijena.jipipe.api.nodes.database.CreateNewNodeByInfoDatabaseEntry
 
canAddOutputSlots() - Method in class org.hkijena.jipipe.api.nodes.database.ExistingCompartmentDatabaseEntry
 
canAddOutputSlots() - Method in class org.hkijena.jipipe.api.nodes.database.ExistingPipelineNodeDatabaseEntry
 
canAddOutputSlots() - Method in interface org.hkijena.jipipe.api.nodes.database.JIPipeNodeDatabaseEntry
 
canAutoPassThrough() - Method in class org.hkijena.jipipe.api.compartments.algorithms.IOInterfaceAlgorithm
 
canAutoPassThrough() - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm
Returns true if the algorithm can automatically apply pass-through This is only possible if there is at most one input and at most one output.
cancel(String) - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo
 
cancel() - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo
 
cancel - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
cancel(JIPipeRunnable) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue
Cancels a runnable
cancel(boolean) - Method in class org.hkijena.jipipe.utils.InstantFuture
 
cancelAll() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue
 
cancelIf(Predicate<JIPipeRunnable>) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue
 
CancelledEvent(ProcessUtils.RunCancellationWatchdog) - Constructor for class org.hkijena.jipipe.utils.ProcessUtils.RunCancellationWatchdog.CancelledEvent
 
CancelledEventEmitter() - Constructor for class org.hkijena.jipipe.utils.ProcessUtils.RunCancellationWatchdog.CancelledEventEmitter
 
canClose() - Method in class org.hkijena.jipipe.api.data.JIPipeDataItemStore
Returns true if the data has no users and thus can be closed
canConnect(JIPipeDataSlot, JIPipeDataSlot, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Slow implementation of connection checking that tests for graph cycles
canConnectFast(JIPipeDataSlot, JIPipeDataSlot, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Fast implementation of connection checking without copying the graph
canCreateCompatibleInputSlot(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Returns if an input slot with specified type can be created
canCreateCompatibleInputSlot(Class<? extends JIPipeData>) - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
canCreateCompatibleOutputSlot(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Returns if an output slot with specified type can be created
canCreateCompatibleOutputSlot(Class<? extends JIPipeData>) - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
canExtract() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory
 
canExtract() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory
Returns if the node can be extracted (copied) from the graph
canModifyInputSlots() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
canModifyInputSlots() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
canModifyOutputSlots() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
canModifyOutputSlots() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
canModifySlots(JIPipeWorkbench) - Static method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench
 
canNavigate(JIPipeWorkbench) - Method in class org.hkijena.jipipe.api.validation.contexts.GraphNodeValidationReportContext
 
canNavigate(JIPipeWorkbench) - Method in class org.hkijena.jipipe.api.validation.NavigableJIPipeValidationReportContext
 
CannyEdgeDetectorAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.edge
This is the JIPipe version of the ImageJ plugin ...
CannyEdgeDetectorAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.edge.CannyEdgeDetectorAlgorithm
Instantiates a new node type.
CannyEdgeDetectorAlgorithm(CannyEdgeDetectorAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.edge.CannyEdgeDetectorAlgorithm
 
canPassThrough() - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm
Returns true if the algorithm can apply pass-through.
canPassThrough() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithAnnotationTable
 
canPassThrough() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.MergeAnnotations
 
canPassThrough() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter
 
canPassThrough() - Method in class org.hkijena.jipipe.extensions.forms.algorithms.FormGeneratorAlgorithm
 
canPassThrough() - Method in class org.hkijena.jipipe.extensions.forms.algorithms.IteratingFormProcessorAlgorithm
 
canPassThrough() - Method in class org.hkijena.jipipe.extensions.forms.algorithms.MergingFormProcessorAlgorithm
 
canPassThrough() - Method in class org.hkijena.jipipe.extensions.forms.algorithms.SimpleIteratingFormProcessorAlgorithm
 
canPassThrough() - Method in class org.hkijena.jipipe.extensions.ij3d.nodes.overlay.RenderOverlay3DAlgorithm
 
canPassThrough() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.forms.DrawMaskAlgorithm
 
canPassThrough() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.forms.DrawROIAlgorithm
 
canPassThrough() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.overlay.RenderOverlayAlgorithm
 
canPassThrough() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.roi.convert.RoiToRGBAlgorithm
 
canPassThrough() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.roi.measure.CountROIAlgorithm
 
canPassThrough() - Method in class org.hkijena.jipipe.extensions.multiparameters.nodes.ExtractParametersAlgorithm
 
canPassThrough() - Method in class org.hkijena.jipipe.extensions.utils.algorithms.datatable.ExtractTableAlgorithm
 
canRegister() - Method in class org.hkijena.jipipe.api.registries.JIPipeDefaultNodeRegistrationTask
 
canRegister() - Method in interface org.hkijena.jipipe.api.registries.JIPipeNodeRegistrationTask
Returns true if the registration can be done This function should fail as fast as possible
canRegister() - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionRegistrationTask
 
canRemoveInputSlot(String, boolean) - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
canRemoveOutputSlot(String, boolean) - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
canRenderEdge(JIPipeDataSlot, JIPipeDataSlot, JIPipeGraphEdge) - Method in class org.hkijena.jipipe.api.grapheditortool.JIPipeRewireGraphEditorTool
 
canRenderEdge(JIPipeDataSlot, JIPipeDataSlot, JIPipeGraphEdge) - Method in interface org.hkijena.jipipe.api.grapheditortool.JIPipeToggleableGraphEditorTool
 
canShow(JIPipeDataSlot, JIPipeDataTableMetadataRow, Path) - Method in interface org.hkijena.jipipe.api.data.JIPipeDataImportOperation
Checks if the import is possible
canShowNotification(JIPipeRunWorker) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunQueueNotifier
 
canUserDelete(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Returns true if the user can delete the algorithm
canUserDelete() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Returns true if a user can delete this algorithm
canUserDisconnect(JIPipeDataSlot, JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Returns true if the user can disconnect the slots
canvas - Variable in class org.hkijena.jipipe.extensions.imageviewer.utils.viewer3d.universe.CustomInteractiveViewPlatformTransformer
 
CanvasEqualizer - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.transform
 
CanvasEqualizer() - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.transform.CanvasEqualizer
 
CanvasEqualizer(CanvasEqualizer) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.transform.CanvasEqualizer
 
CanvasParameters() - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.utils.MontageCreator.CanvasParameters
 
CanvasParameters(MontageCreator.CanvasParameters) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.utils.MontageCreator.CanvasParameters
 
canvasResized() - Method in class org.hkijena.jipipe.extensions.imageviewer.ImageViewerPanel3D
 
CaseFunction - Class in org.hkijena.jipipe.extensions.expressions.functions.control
 
CaseFunction() - Constructor for class org.hkijena.jipipe.extensions.expressions.functions.control.CaseFunction
 
CATEGORY_3D - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_ANALYSIS - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_ANNOTATION - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_AUTOMATION - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_BENCHMARK - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_BINARY - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_CELLPROFILER - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_CLASSIFICATION - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_COLOCALIZATION - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_COLOR_PROCESSING - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_COMPLEXITY - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_COOKBOOK - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_DATA_PROCESSING - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_DECONVOLUTION - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_DEEP_LEARNING - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_DENOISING - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_DEVELOPMENT - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_DIGITAL_VOLUME_FLATTENING - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_DIGITAL_VOLUME_UNROLLING - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_ENTROPY - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_EXAMPLE_DATA - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_FEATURE_EXTRACTION - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_FIJI - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_FILTERING - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_FRACTAL_DIMENSION - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_GPU - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_GUT - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_HELP - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_IMAGE_ANALYSIS - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_IMAGE_ANNOTATION - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_IMAGE_SCIENCE - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_IMAGEJ2 - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_IMGLIB - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_IMPORT_EXPORT - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_INTEGRAL_IMAGE - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_INTERACTIVE - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_LIFETIME - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_LISP - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_MACHINE_LEARNING - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_MATHEMATICAL_MORPHOLOGY - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_MATLAB - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_MICROSCOPY - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_MICROTUBULES - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_MONTAGE - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_NEUROANATOMY - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_NEURON - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_NOISE - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_OBJECT_DETECTION - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_OME - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_OPS - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_OPTIC_FLOW - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_PARTICLE_ANALYSIS - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_PATTERN_RECOGNITION - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_PERFUSION - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_PHOTOGRAMMETRY - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_PHOTOGRAPHY - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_PLOTTING - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_PROJECTION - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_REGISTRATION - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_SCIJAVA - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_SCRIPTING - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_SEGMENTATION - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_SKELETON - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_SKELETONIZATION - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_STACKS - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_STATISTICS - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_STITCHING - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_SUPER_RESOLUTION - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_TIME_SIGNAL_ANALYSIS - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_TISSUE - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_TRACKEM2 - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_TRACKING - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_TRANSFORM - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_TUTORIAL - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_TUTORIALS - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_UNCATEGORIZED - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_USER_INTERFACE - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_VISUALIZATION - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes
Contains data for category plots.
CategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.CategoryPlotData
Creates a new instance
CategoryPlotData(CategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.CategoryPlotData
Creates a copy
CeilingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a floor function
CeilingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.CeilingColumnOperation
 
CELL_HEIGHT - Static variable in class org.hkijena.jipipe.ui.grapheditor.nodefinder.NodeFinderDatasetListCellRenderer
 
CellposeAlgorithm - Class in org.hkijena.jipipe.extensions.cellpose.algorithms
Improved version of CellposeAlgorithm_Old that utilizes the Cellpose CLI
CellposeAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.cellpose.algorithms.CellposeAlgorithm
 
CellposeAlgorithm(CellposeAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.cellpose.algorithms.CellposeAlgorithm
 
CellposeAlgorithm_Old - Class in org.hkijena.jipipe.extensions.cellpose.algorithms.deprecated
Deprecated.
New implementation will be CellposeAlgorithm2 that is based around the Cellpose CLI
CellposeAlgorithm_Old(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.cellpose.algorithms.deprecated.CellposeAlgorithm_Old
Deprecated.
 
CellposeAlgorithm_Old(CellposeAlgorithm_Old) - Constructor for class org.hkijena.jipipe.extensions.cellpose.algorithms.deprecated.CellposeAlgorithm_Old
Deprecated.
 
CellposeChannelSettings - Class in org.hkijena.jipipe.extensions.cellpose.parameters
 
CellposeChannelSettings() - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.CellposeChannelSettings
 
CellposeChannelSettings(CellposeChannelSettings) - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.CellposeChannelSettings
 
CellposeEasyInstaller - Class in org.hkijena.jipipe.extensions.cellpose.installers
 
CellposeEasyInstaller(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.cellpose.installers.CellposeEasyInstaller
 
CellposeGPUSettings - Class in org.hkijena.jipipe.extensions.cellpose.parameters
 
CellposeGPUSettings() - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.CellposeGPUSettings
 
CellposeGPUSettings(CellposeGPUSettings) - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.CellposeGPUSettings
 
CellposeModel - Enum in org.hkijena.jipipe.extensions.cellpose
 
CellposeModelData - Class in org.hkijena.jipipe.extensions.cellpose.datatypes
Wrapper around Cellpose models
CellposeModelData(Path) - Constructor for class org.hkijena.jipipe.extensions.cellpose.datatypes.CellposeModelData
 
CellposeModelData(byte[], String) - Constructor for class org.hkijena.jipipe.extensions.cellpose.datatypes.CellposeModelData
 
CellposeModelData(CellposeModelData) - Constructor for class org.hkijena.jipipe.extensions.cellpose.datatypes.CellposeModelData
 
CellposeModelImageJExporter - Class in org.hkijena.jipipe.extensions.cellpose.compat
 
CellposeModelImageJExporter() - Constructor for class org.hkijena.jipipe.extensions.cellpose.compat.CellposeModelImageJExporter
 
CellposeModelImageJImporter - Class in org.hkijena.jipipe.extensions.cellpose.compat
 
CellposeModelImageJImporter() - Constructor for class org.hkijena.jipipe.extensions.cellpose.compat.CellposeModelImageJImporter
 
CellposePlugin - Class in org.hkijena.jipipe.extensions.cellpose
 
CellposePlugin() - Constructor for class org.hkijena.jipipe.extensions.cellpose.CellposePlugin
 
CellposePretrainedModel - Enum in org.hkijena.jipipe.extensions.cellpose
 
cellposeROIJsonToImageJ(Path) - Static method in class org.hkijena.jipipe.extensions.cellpose.CellposeUtils
Converts ROI in a custom Json format to ROIListData
cellposeROIToImageJ(Path) - Static method in class org.hkijena.jipipe.extensions.cellpose.CellposeUtils
Converts a Cellpose ROI to ROIListData according to ...
CellposeSegmentationEnhancementSettings_Old - Class in org.hkijena.jipipe.extensions.cellpose.parameters.deprecated
Deprecated.
CellposeSegmentationEnhancementSettings_Old() - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.deprecated.CellposeSegmentationEnhancementSettings_Old
Deprecated.
 
CellposeSegmentationEnhancementSettings_Old(CellposeSegmentationEnhancementSettings_Old) - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.deprecated.CellposeSegmentationEnhancementSettings_Old
Deprecated.
 
CellposeSegmentationModelSettings_Old - Class in org.hkijena.jipipe.extensions.cellpose.parameters.deprecated
Deprecated.
CellposeSegmentationModelSettings_Old() - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.deprecated.CellposeSegmentationModelSettings_Old
Deprecated.
 
CellposeSegmentationModelSettings_Old(CellposeSegmentationModelSettings_Old) - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.deprecated.CellposeSegmentationModelSettings_Old
Deprecated.
 
CellposeSegmentationOutputSettings - Class in org.hkijena.jipipe.extensions.cellpose.parameters
 
CellposeSegmentationOutputSettings() - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.CellposeSegmentationOutputSettings
 
CellposeSegmentationOutputSettings(CellposeSegmentationOutputSettings) - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.CellposeSegmentationOutputSettings
 
CellposeSegmentationOutputSettings_Old - Class in org.hkijena.jipipe.extensions.cellpose.parameters.deprecated
Deprecated.
Used by the old CellposeAlgorithm_Old
CellposeSegmentationOutputSettings_Old() - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.deprecated.CellposeSegmentationOutputSettings_Old
Deprecated.
 
CellposeSegmentationOutputSettings_Old(CellposeSegmentationOutputSettings_Old) - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.deprecated.CellposeSegmentationOutputSettings_Old
Deprecated.
 
CellposeSegmentationPerformanceSettings_Old - Class in org.hkijena.jipipe.extensions.cellpose.parameters.deprecated
Deprecated.
CellposeSegmentationPerformanceSettings_Old() - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.deprecated.CellposeSegmentationPerformanceSettings_Old
Deprecated.
 
CellposeSegmentationPerformanceSettings_Old(CellposeSegmentationPerformanceSettings_Old) - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.deprecated.CellposeSegmentationPerformanceSettings_Old
Deprecated.
 
CellposeSegmentationThresholdSettings - Class in org.hkijena.jipipe.extensions.cellpose.parameters
 
CellposeSegmentationThresholdSettings() - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.CellposeSegmentationThresholdSettings
 
CellposeSegmentationThresholdSettings(CellposeSegmentationThresholdSettings) - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.CellposeSegmentationThresholdSettings
 
CellposeSegmentationThresholdSettings_Old - Class in org.hkijena.jipipe.extensions.cellpose.parameters.deprecated
Deprecated.
CellposeSegmentationThresholdSettings_Old() - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.deprecated.CellposeSegmentationThresholdSettings_Old
Deprecated.
 
CellposeSegmentationThresholdSettings_Old(CellposeSegmentationThresholdSettings_Old) - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.deprecated.CellposeSegmentationThresholdSettings_Old
Deprecated.
 
CellposeSegmentationTweaksSettings - Class in org.hkijena.jipipe.extensions.cellpose.parameters
 
CellposeSegmentationTweaksSettings() - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.CellposeSegmentationTweaksSettings
 
CellposeSegmentationTweaksSettings(CellposeSegmentationTweaksSettings) - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.CellposeSegmentationTweaksSettings
 
CellposeSettings - Class in org.hkijena.jipipe.extensions.cellpose
 
CellposeSettings() - Constructor for class org.hkijena.jipipe.extensions.cellpose.CellposeSettings
 
CellposeSizeModelData - Class in org.hkijena.jipipe.extensions.cellpose.datatypes
Wrapper around Cellpose models
CellposeSizeModelData(Path) - Constructor for class org.hkijena.jipipe.extensions.cellpose.datatypes.CellposeSizeModelData
 
CellposeSizeModelData(byte[], String) - Constructor for class org.hkijena.jipipe.extensions.cellpose.datatypes.CellposeSizeModelData
 
CellposeSizeModelData(CellposeSizeModelData) - Constructor for class org.hkijena.jipipe.extensions.cellpose.datatypes.CellposeSizeModelData
 
CellposeSizeModelImageJExporter - Class in org.hkijena.jipipe.extensions.cellpose.compat
 
CellposeSizeModelImageJExporter() - Constructor for class org.hkijena.jipipe.extensions.cellpose.compat.CellposeSizeModelImageJExporter
 
CellposeSizeModelImageJImporter - Class in org.hkijena.jipipe.extensions.cellpose.compat
 
CellposeSizeModelImageJImporter() - Constructor for class org.hkijena.jipipe.extensions.cellpose.compat.CellposeSizeModelImageJImporter
 
CellposeTrainingAlgorithm - Class in org.hkijena.jipipe.extensions.cellpose.algorithms
 
CellposeTrainingAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.cellpose.algorithms.CellposeTrainingAlgorithm
 
CellposeTrainingAlgorithm(CellposeTrainingAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.cellpose.algorithms.CellposeTrainingAlgorithm
 
CellposeTrainingAlgorithm_Old - Class in org.hkijena.jipipe.extensions.cellpose.algorithms.deprecated
Deprecated.
CellposeTrainingAlgorithm_Old(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.cellpose.algorithms.deprecated.CellposeTrainingAlgorithm_Old
Deprecated.
 
CellposeTrainingAlgorithm_Old(CellposeTrainingAlgorithm_Old) - Constructor for class org.hkijena.jipipe.extensions.cellpose.algorithms.deprecated.CellposeTrainingAlgorithm_Old
Deprecated.
 
CellposeTrainingTweaksSettings - Class in org.hkijena.jipipe.extensions.cellpose.parameters
 
CellposeTrainingTweaksSettings() - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.CellposeTrainingTweaksSettings
 
CellposeTrainingTweaksSettings(CellposeTrainingTweaksSettings) - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.CellposeTrainingTweaksSettings
 
CellposeUtils - Class in org.hkijena.jipipe.extensions.cellpose
 
center - Variable in class org.hkijena.jipipe.utils.PointRange
 
centerAt(Point3d) - Method in class org.hkijena.jipipe.extensions.imageviewer.utils.viewer3d.universe.CustomInteractiveViewPlatformTransformer
Center the view at the given point.
CenteredRectangleImageJ2ShapeData - Class in org.hkijena.jipipe.extensions.imagej2.datatypes.shapes
 
CenteredRectangleImageJ2ShapeData() - Constructor for class org.hkijena.jipipe.extensions.imagej2.datatypes.shapes.CenteredRectangleImageJ2ShapeData
 
CenteredRectangleImageJ2ShapeData(RectangleShape) - Constructor for class org.hkijena.jipipe.extensions.imagej2.datatypes.shapes.CenteredRectangleImageJ2ShapeData
 
CenteredRectangleImageJ2ShapeData(CenteredRectangleImageJ2ShapeData) - Constructor for class org.hkijena.jipipe.extensions.imagej2.datatypes.shapes.CenteredRectangleImageJ2ShapeData
 
centerImage() - Method in class org.hkijena.jipipe.extensions.imageviewer.utils.viewer2d.ImageViewerPanelCanvas2D
 
centerX - Variable in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.HoughLines
 
centerY - Variable in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.HoughLines
 
ChamferDistanceMap2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.math.distancemap
 
ChamferDistanceMap2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.math.distancemap.ChamferDistanceMap2DAlgorithm
Instantiates a new node type.
ChamferDistanceMap2DAlgorithm(ChamferDistanceMap2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.math.distancemap.ChamferDistanceMap2DAlgorithm
Instantiates a new node type.
ChamferDistanceMap3DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.math.distancemap
 
ChamferDistanceMap3DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.math.distancemap.ChamferDistanceMap3DAlgorithm
Instantiates a new node type.
ChamferDistanceMap3DAlgorithm(ChamferDistanceMap3DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.math.distancemap.ChamferDistanceMap3DAlgorithm
Instantiates a new node type.
changed(DocumentEvent) - Method in class org.hkijena.jipipe.ui.components.DocumentChangeListener
All-in-one event for insertion, removal, change
changedUpdate(DocumentEvent) - Method in class org.hkijena.jipipe.ui.components.DocumentChangeListener
 
changedUpdate(DocumentEvent, Shape, ViewFactory) - Method in class org.hkijena.jipipe.ui.components.html.ExtendedImageView
Invoked when the Elements attributes have changed.
ChangeFilamentEdgePropertiesAlgorithm - Class in org.hkijena.jipipe.extensions.ijfilaments.nodes.modify
 
ChangeFilamentEdgePropertiesAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.ijfilaments.nodes.modify.ChangeFilamentEdgePropertiesAlgorithm
 
ChangeFilamentEdgePropertiesAlgorithm(ChangeFilamentEdgePropertiesAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.ijfilaments.nodes.modify.ChangeFilamentEdgePropertiesAlgorithm
 
ChangeFilamentVertexPropertiesAlgorithm - Class in org.hkijena.jipipe.extensions.ijfilaments.nodes.modify
 
ChangeFilamentVertexPropertiesAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.ijfilaments.nodes.modify.ChangeFilamentVertexPropertiesAlgorithm
 
ChangeFilamentVertexPropertiesAlgorithm(ChangeFilamentVertexPropertiesAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.ijfilaments.nodes.modify.ChangeFilamentVertexPropertiesAlgorithm
 
ChangeImageMetadataFromExpressionsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.metadata
Wrapper around RoiManager
ChangeImageMetadataFromExpressionsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.metadata.ChangeImageMetadataFromExpressionsAlgorithm
Instantiates a new node type.
ChangeImageMetadataFromExpressionsAlgorithm(ChangeImageMetadataFromExpressionsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.metadata.ChangeImageMetadataFromExpressionsAlgorithm
Instantiates a new node type.
ChangeRoi3DPropertiesAlgorithm - Class in org.hkijena.jipipe.extensions.ij3d.nodes.roi3d.modify
 
ChangeRoi3DPropertiesAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.ij3d.nodes.roi3d.modify.ChangeRoi3DPropertiesAlgorithm
 
ChangeRoi3DPropertiesAlgorithm(ChangeRoi3DPropertiesAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.ij3d.nodes.roi3d.modify.ChangeRoi3DPropertiesAlgorithm
 
ChangeRoi3DPropertiesFromExpressionsAlgorithm - Class in org.hkijena.jipipe.extensions.ij3d.nodes.roi3d.modify
 
ChangeRoi3DPropertiesFromExpressionsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.ij3d.nodes.roi3d.modify.ChangeRoi3DPropertiesFromExpressionsAlgorithm
 
ChangeRoi3DPropertiesFromExpressionsAlgorithm(ChangeRoi3DPropertiesFromExpressionsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.ij3d.nodes.roi3d.modify.ChangeRoi3DPropertiesFromExpressionsAlgorithm
 
ChangeRoi3DPropertiesFromExpressionsAlgorithm.MetadataEntry - Class in org.hkijena.jipipe.extensions.ij3d.nodes.roi3d.modify
 
ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.roi.modify
 
ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.roi.modify.ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm
 
ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm(ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.roi.modify.ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm
 
ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm.VariablesInfo - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.roi.modify
 
ChangeRoiPropertiesAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.roi.modify
Wrapper around RoiManager
ChangeRoiPropertiesAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.roi.modify.ChangeRoiPropertiesAlgorithm
Instantiates a new node type.
ChangeRoiPropertiesAlgorithm(ChangeRoiPropertiesAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.roi.modify.ChangeRoiPropertiesAlgorithm
Instantiates a new node type.
ChangeRoiPropertiesFromAnnotationsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.roi.modify
Wrapper around RoiManager
ChangeRoiPropertiesFromAnnotationsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.roi.modify.ChangeRoiPropertiesFromAnnotationsAlgorithm
Instantiates a new node type.
ChangeRoiPropertiesFromAnnotationsAlgorithm(ChangeRoiPropertiesFromAnnotationsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.roi.modify.ChangeRoiPropertiesFromAnnotationsAlgorithm
Instantiates a new node type.
ChangeRoiPropertiesFromExpressionsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.roi.modify
Wrapper around RoiManager
ChangeRoiPropertiesFromExpressionsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.roi.modify.ChangeRoiPropertiesFromExpressionsAlgorithm
Instantiates a new node type.
ChangeRoiPropertiesFromExpressionsAlgorithm(ChangeRoiPropertiesFromExpressionsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.roi.modify.ChangeRoiPropertiesFromExpressionsAlgorithm
Instantiates a new node type.
ChangeRoiPropertiesFromExpressionsAlgorithm.VariablesInfo - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.roi.modify
 
Channel() - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.color.OverlayImagesAlgorithm.Channel
Deprecated.
 
Channel(Color) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.color.OverlayImagesAlgorithm.Channel
Deprecated.
 
Channel(Color, double) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.color.OverlayImagesAlgorithm.Channel
Deprecated.
 
Channel(OverlayImagesAlgorithm.Channel) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.color.OverlayImagesAlgorithm.Channel
Deprecated.
 
channelsToRGB(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Converted a 3-channel image into RGB (reducing the dimensionality)
checkAndAskIfFileExists(Component, Path, String) - Static method in class org.hkijena.jipipe.utils.UIUtils
Checks if a file exists and asks the user if it should be overwritten
CheckBoxAction - Class in org.hkijena.jipipe.ui.components.ribbon
 
CheckBoxAction(String, String) - Constructor for class org.hkijena.jipipe.ui.components.ribbon.CheckBoxAction
 
CheckBoxAction(String, String, boolean, Consumer<JCheckBox>) - Constructor for class org.hkijena.jipipe.ui.components.ribbon.CheckBoxAction
 
CheckBoxIcon - Class in org.hkijena.jipipe.utils.ui
Taken from MetalIconFactory
CheckBoxIcon(Color) - Constructor for class org.hkijena.jipipe.utils.ui.CheckBoxIcon
 
CheckBoxMenuItemIcon - Class in org.hkijena.jipipe.utils.ui
Taken from MetalIconFactory
CheckBoxMenuItemIcon(Color) - Constructor for class org.hkijena.jipipe.utils.ui.CheckBoxMenuItemIcon
 
checkExtensionDependencies(JIPipeWorkbench) - Static method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow
 
checkIlastikSettings(JIPipeValidationReportContext, JIPipeValidationReport) - Static method in class org.hkijena.jipipe.extensions.ilastik.IlastikSettings
Checks if the Python settings are valid or reports an invalid state
checkPythonSettings(JIPipeValidationReportContext, JIPipeValidationReport) - Static method in class org.hkijena.jipipe.extensions.cellpose.CellposeSettings
Checks if the Python settings are valid or reports an invalid state
checkPythonSettings(JIPipeValidationReportContext, JIPipeValidationReport) - Static method in class org.hkijena.jipipe.extensions.omnipose.OmniposeSettings
Checks if the Python settings are valid or reports an invalid state
checkPythonSettings(JIPipeValidationReportContext, JIPipeValidationReport) - Static method in class org.hkijena.jipipe.extensions.python.PythonExtensionSettings
Checks if the Python settings are valid or reports an invalid state
checkRSettings(JIPipeValidationReportContext, JIPipeValidationReport) - Static method in class org.hkijena.jipipe.extensions.r.RExtensionSettings
Checks if the R settings are valid or reports an invalid state
checkScriptParametersValidity(JIPipeCustomParameterCollection, JIPipeValidationReportContext, JIPipeValidationReport) - Static method in class org.hkijena.jipipe.utils.scripting.JythonUtils
 
checkScriptValidity(String, JIPipeCustomParameterCollection, JIPipeValidationReportContext, JIPipeValidationReport) - Static method in class org.hkijena.jipipe.utils.scripting.JythonUtils
 
checkSyntax(String) - Method in class org.hkijena.jipipe.extensions.expressions.JIPipeExpressionEvaluator
Checks the syntax of an expression.
checkUnindexedNormalsArray(float[], float[]) - Static method in class org.hkijena.jipipe.extensions.scene3d.utils.Scene3DUtils
 
checkUnindexedPolygonArray(float[]) - Static method in class org.hkijena.jipipe.extensions.scene3d.utils.Scene3DUtils
 
checkUpdateSites(JIPipeRegistryIssues, List<JIPipeDependency>, Progress, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.JIPipe
Checks the update sites of all extensions and stores the results in the issues
choosePath() - Method in class org.hkijena.jipipe.ui.components.PathEditor
Opens the file chooser
CircularHoughSegmentation2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.threshold
Segments using a Hough circle transform
CircularHoughSegmentation2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.threshold.CircularHoughSegmentation2DAlgorithm
 
CircularHoughSegmentation2DAlgorithm(CircularHoughSegmentation2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.threshold.CircularHoughSegmentation2DAlgorithm
Copies the algorithm
CLAHEContrastEnhancer - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.contrast
Applies CLAHE image enhancing
CLAHEContrastEnhancer(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.contrast.CLAHEContrastEnhancer
 
CLAHEContrastEnhancer(CLAHEContrastEnhancer) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.contrast.CLAHEContrastEnhancer
Copies the algorithm
ClampFunction - Class in org.hkijena.jipipe.extensions.expressions.functions.math
 
ClampFunction() - Constructor for class org.hkijena.jipipe.extensions.expressions.functions.math.ClampFunction
 
ClampNegativeColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a min(0, x) function
ClampNegativeColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.ClampNegativeColumnOperation
 
ClampPositiveColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a max(0, x) function
ClampPositiveColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.ClampPositiveColumnOperation
 
classExists(String) - Static method in class org.hkijena.jipipe.utils.ReflectionUtils
 
ClassFilter - Interface in org.hkijena.jipipe.utils.classfilters
 
ClassicWatershedSegmentationAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.segment
 
ClassicWatershedSegmentationAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.segment.ClassicWatershedSegmentationAlgorithm
 
ClassicWatershedSegmentationAlgorithm(ClassicWatershedSegmentationAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.segment.ClassicWatershedSegmentationAlgorithm
 
cleanGraph(JIPipeGraph, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.run.JIPipeGraphRun
 
cleanup(Map<String, Path>, Map<String, Path>, JIPipeProgressInfo) - Static method in class org.hkijena.jipipe.extensions.python.PythonUtils
 
clear() - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Removes all rows from this table
clear() - Method in class org.hkijena.jipipe.api.data.serialization.JIPipeDataTableMetadata
 
clear() - Method in class org.hkijena.jipipe.api.history.JIPipeDedicatedGraphHistoryJournal
 
clear() - Method in class org.hkijena.jipipe.api.history.JIPipeDummyGraphHistoryJournal
 
clear() - Method in interface org.hkijena.jipipe.api.history.JIPipeHistoryJournal
Clears the journal
clear() - Method in class org.hkijena.jipipe.api.history.JIPipeProjectHistoryJournal
 
clear() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Clears this graph
clear() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
Removes all parameters
clear() - Method in class org.hkijena.jipipe.extensions.parameters.library.table.ParameterTable
Clears the table
clear() - Method in class org.hkijena.jipipe.extensions.scene3d.datatypes.Scene3DData
 
clear() - Method in class org.hkijena.jipipe.ui.components.FormPanel
Removes all components
clear() - Method in class org.hkijena.jipipe.ui.components.MessagePanel
 
clear() - Method in class org.hkijena.jipipe.ui.components.ribbon.Ribbon
Clears the ribbon.
clear() - Method in class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI
 
clear() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnableLogsCollection
 
clearAll(JIPipeProgressInfo) - Method in interface org.hkijena.jipipe.api.cache.JIPipeCache
Clears the cache
clearAll(UUID, boolean, JIPipeProgressInfo) - Method in interface org.hkijena.jipipe.api.cache.JIPipeCache
Clears the cache of the specified node
clearAll(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.cache.JIPipeLocalProjectMemoryCache
 
clearAll(UUID, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.cache.JIPipeLocalProjectMemoryCache
 
ClearCacheNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.general.contextmenu
 
ClearCacheNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.general.contextmenu.ClearCacheNodeUIContextAction
 
clearCurrentMask() - Method in class org.hkijena.jipipe.extensions.imageviewer.plugins2d.maskdrawer.MaskDrawerPlugin2D
 
clearData() - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Removes all rows from this table
ClearedEvent(JIPipeCache, UUID) - Constructor for class org.hkijena.jipipe.api.cache.JIPipeCache.ClearedEvent
 
ClearedEventEmitter() - Constructor for class org.hkijena.jipipe.api.cache.JIPipeCache.ClearedEventEmitter
 
clearFilaments() - Method in class org.hkijena.jipipe.extensions.ijfilaments.display.FilamentsManagerPlugin3D
 
clearInputSlots(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Removes all input slots
clearLocations() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Removes all location information added via setLocationWithin()
clearLog() - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo
 
clearOutdated(JIPipeProgressInfo) - Method in interface org.hkijena.jipipe.api.cache.JIPipeCache
Removes all outdated entries
clearOutdated(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.cache.JIPipeLocalProjectMemoryCache
 
clearOutputSlots(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Removes all output slots
clearOverlays() - Method in class org.hkijena.jipipe.extensions.imageviewer.JIPipeImageViewer
 
clearPreviewCache() - Method in class org.hkijena.jipipe.ui.datatable.JIPipeExtendedMultiDataTableModel
 
clearQueue() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue
Removes all enqueued (but not running tasks)
clearROIs() - Method in class org.hkijena.jipipe.extensions.ij3d.imageviewer.ROIManagerPlugin3D
 
clearROIs(boolean) - Method in class org.hkijena.jipipe.extensions.imageviewer.plugins2d.roimanager.ROIManagerPlugin2D
 
clearSchedule(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeExtensionRegistry
 
clearSearch() - Method in class org.hkijena.jipipe.ui.grapheditor.general.search.NodeDatabaseSearchBox
Clears the search field
clearSelection() - Method in class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphCanvasUI
Clears the list of selected algorithms
clearSelection() - Method in class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphEditorUI
Clears the algorithm selection
clearSeries() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
Removes all series
clearSlotData() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Clears all data slots
CLIIJ2DataToImageWindowImageJExporter - Class in org.hkijena.jipipe.extensions.clij2.compat
 
CLIIJ2DataToImageWindowImageJExporter() - Constructor for class org.hkijena.jipipe.extensions.clij2.compat.CLIIJ2DataToImageWindowImageJExporter
 
CLIJ2DataFromImageWindowImageJImporter - Class in org.hkijena.jipipe.extensions.clij2.compat
 
CLIJ2DataFromImageWindowImageJImporter() - Constructor for class org.hkijena.jipipe.extensions.clij2.compat.CLIJ2DataFromImageWindowImageJImporter
 
Clij2ExecuteKernelIterating - Class in org.hkijena.jipipe.extensions.clij2.algorithms
 
Clij2ExecuteKernelIterating(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating
 
Clij2ExecuteKernelIterating(Clij2ExecuteKernelIterating) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating
 
Clij2ExecuteKernelSimpleIterating - Class in org.hkijena.jipipe.extensions.clij2.algorithms
 
Clij2ExecuteKernelSimpleIterating(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating
 
Clij2ExecuteKernelSimpleIterating(Clij2ExecuteKernelSimpleIterating) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating
 
Clij2PullAlgorithm - Class in org.hkijena.jipipe.extensions.clij2.algorithms
 
Clij2PullAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PullAlgorithm
 
Clij2PullAlgorithm(Clij2PullAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PullAlgorithm
 
Clij2PushAlgorithm - Class in org.hkijena.jipipe.extensions.clij2.algorithms
 
Clij2PushAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PushAlgorithm
 
Clij2PushAlgorithm(Clij2PushAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PushAlgorithm
 
CLIJCommandNode - Class in org.hkijena.jipipe.extensions.clij2
 
CLIJCommandNode(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.CLIJCommandNode
 
CLIJCommandNode(CLIJCommandNode) - Constructor for class org.hkijena.jipipe.extensions.clij2.CLIJCommandNode
 
CLIJCommandNodeInfo - Class in org.hkijena.jipipe.extensions.clij2
 
CLIJCommandNodeInfo(Context, PluginInfo<CLIJMacroPlugin>, JIPipeProgressInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.CLIJCommandNodeInfo
 
CLIJCommandNodeInfo.OutputTableColumnInfo - Class in org.hkijena.jipipe.extensions.clij2
 
CLIJControlPanel - Class in org.hkijena.jipipe.extensions.clij2.ui
Graphical control panel for CLIJ
CLIJControlPanel(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.clij2.ui.CLIJControlPanel
 
CLIJControlPanelJIPipeMenuExtension - Class in org.hkijena.jipipe.extensions.clij2.ui
Adds a menu item that allows to control CLIJ
CLIJControlPanelJIPipeMenuExtension(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.clij2.ui.CLIJControlPanelJIPipeMenuExtension
Creates a new instance
CLIJImageData - Class in org.hkijena.jipipe.extensions.clij2.datatypes
Contains a CLIJ image
CLIJImageData(ClearCLBuffer) - Constructor for class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData
Initializes a new instance from an existing buffer
CLIJImageData(ImagePlusData) - Constructor for class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData
Initializes an instance by copying data from ImagePlusData
CLIJImageData(CLIJImageData) - Constructor for class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData
Makes a copy
CLIJImageToImagePlusDataConverter - Class in org.hkijena.jipipe.extensions.clij2.datatypes
Converter from CLIJImageData to ImagePlusData
CLIJImageToImagePlusDataConverter(Class<? extends JIPipeData>) - Constructor for class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageToImagePlusDataConverter
 
CLIJImageViewerCustomDataLoader - Class in org.hkijena.jipipe.extensions.clij2.datatypes
 
CLIJImageViewerCustomDataLoader() - Constructor for class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageViewerCustomDataLoader
 
CLIJPlugin - Class in org.hkijena.jipipe.extensions.clij2
Integrates CLIJ
CLIJPlugin() - Constructor for class org.hkijena.jipipe.extensions.clij2.CLIJPlugin
 
CLIJSettings - Class in org.hkijena.jipipe.extensions.clij2
Settings for CLIJ
CLIJSettings() - Constructor for class org.hkijena.jipipe.extensions.clij2.CLIJSettings
 
CLIJSettings.ContrastEnhancerSettings - Class in org.hkijena.jipipe.extensions.clij2
 
cloneTableModel(TableModel) - Static method in class org.hkijena.jipipe.utils.TableUtils
Copies a table
close() - Method in interface org.hkijena.jipipe.api.data.JIPipeData
 
close() - Method in class org.hkijena.jipipe.api.data.JIPipeDataItemStore
 
close() - Method in class org.hkijena.jipipe.api.data.storage.JIPipeFileSystemReadDataStorage
 
close() - Method in class org.hkijena.jipipe.api.data.storage.JIPipeFileSystemWriteDataStorage
 
close() - Method in class org.hkijena.jipipe.api.data.storage.JIPipeZIPReadDataStorage
 
close() - Method in class org.hkijena.jipipe.api.data.storage.JIPipeZIPWriteDataStorage
 
close() - Method in class org.hkijena.jipipe.api.JIPipeFixedThreadPool
 
close() - Method in class org.hkijena.jipipe.api.JIPipeProgressInfoOutputStream
 
close() - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData
 
close() - Method in class org.hkijena.jipipe.extensions.omero.util.OMEROGateway
 
close() - Method in class org.hkijena.jipipe.extensions.omero.util.OMEROImageUploader
 
close() - Method in class org.hkijena.jipipe.extensions.parameters.api.scripts.ScriptParameterEditorUI.ExternalEditor
 
close() - Method in class org.hkijena.jipipe.extensions.parameters.api.scripts.ScriptParameterEditorUI.ExternalFileExternalEditor
 
close() - Method in class org.hkijena.jipipe.extensions.parameters.api.scripts.ScriptParameterEditorUI.TabExternalEditor
 
close() - Method in class org.hkijena.jipipe.extensions.parameters.api.scripts.ScriptParameterEditorUI.WindowExternalEditor
 
close() - Method in class org.hkijena.jipipe.utils.IJLogToJIPipeProgressInfoPump
 
close() - Method in class org.hkijena.jipipe.utils.ui.BusyCursor
 
CloseAllImageJWindowsTool - Class in org.hkijena.jipipe.extensions.tools
 
CloseAllImageJWindowsTool(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.tools.CloseAllImageJWindowsTool
Creates a new instance
closeAllTabs(boolean) - Method in class org.hkijena.jipipe.ui.components.tabs.DocumentTabPane
Closes all tabs
closeAllTabsExcept(DocumentTabPane.DocumentTab, boolean) - Method in class org.hkijena.jipipe.ui.components.tabs.DocumentTabPane
Closes all tabs except the provided one.
closeMessage() - Method in class org.hkijena.jipipe.ui.components.MessagePanel.Message
 
closeTab(DocumentTabPane.DocumentTab, boolean) - Method in class org.hkijena.jipipe.ui.components.tabs.DocumentTabPane
Closes a tab.
closeTab(DocumentTabPane.DocumentTab) - Method in class org.hkijena.jipipe.ui.components.tabs.DocumentTabPane
Closes the tab.
collapse(IOInterfaceAlgorithm) - Static method in class org.hkijena.jipipe.api.compartments.algorithms.IOInterfaceAlgorithm
Removes the interface and directly connects the inputs and outputs
CollapseIOInterfaceNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.general.contextmenu
 
CollapseIOInterfaceNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.general.contextmenu.CollapseIOInterfaceNodeUIContextAction
 
CollectBackupsRun - Class in org.hkijena.jipipe.api.backups
 
CollectBackupsRun() - Constructor for class org.hkijena.jipipe.api.backups.CollectBackupsRun
 
CollectTraceRun - Class in org.hkijena.jipipe.ui.datatracer
 
CollectTraceRun(JIPipeProjectWorkbench, JIPipeGraphNode, String, UUID, JIPipeDataTable, int) - Constructor for class org.hkijena.jipipe.ui.datatracer.CollectTraceRun
 
Coloc2Node - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.colocalization
 
Coloc2Node(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.colocalization.Coloc2Node
 
Coloc2Node(Coloc2Node) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.colocalization.Coloc2Node
 
Coloc2Node.Settings - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.colocalization
 
ColocResult(DataContainer<T>, AnalysisResults<T>) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.colocalization.CustomColoc2.ColocResult
 
COLOR_CONSTANT - Static variable in class org.hkijena.jipipe.extensions.expressions.ui.ExpressionBuilderUI
 
COLOR_CREATE - Static variable in class org.hkijena.jipipe.ui.grapheditor.general.search.NodeDatabaseSearchBoxListCellRenderer
 
COLOR_DISABLED_1 - Static variable in class org.hkijena.jipipe.ui.grapheditor.general.nodeui.JIPipeGraphNodeUI
 
COLOR_DISABLED_2 - Static variable in class org.hkijena.jipipe.ui.grapheditor.general.nodeui.JIPipeGraphNodeUI
 
COLOR_EXTENSION - Static variable in class org.hkijena.jipipe.extensions.nodetemplate.JIPipeNodeTemplateListCellRenderer
 
COLOR_FUNCTION - Static variable in class org.hkijena.jipipe.extensions.expressions.ui.ExpressionBuilderUI
 
COLOR_GLOBAL - Static variable in class org.hkijena.jipipe.extensions.nodetemplate.JIPipeNodeTemplateListCellRenderer
 
COLOR_HIGHLIGHT - Static variable in class org.hkijena.jipipe.ui.batchassistant.DataBatchAssistantInputPreviewPanelTable
 
COLOR_HIGHLIGHT - Static variable in class org.hkijena.jipipe.ui.datatracer.DataTrackerNodeOutputUI
 
COLOR_HIGHLIGHT_CELL - Static variable in class org.hkijena.jipipe.ui.batchassistant.DataBatchAssistantInputPreviewPanelTable
 
COLOR_HIGHLIGHT_GREEN - Static variable in class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphCanvasUI
 
COLOR_MAP - Static variable in class org.hkijena.jipipe.utils.ColorUtils
 
COLOR_NAVIGATE - Static variable in class org.hkijena.jipipe.ui.grapheditor.general.search.NodeDatabaseSearchBoxListCellRenderer
 
COLOR_OPERATOR - Static variable in class org.hkijena.jipipe.extensions.expressions.ui.ExpressionBuilderUI
 
COLOR_PROJECT - Static variable in class org.hkijena.jipipe.extensions.nodetemplate.JIPipeNodeTemplateListCellRenderer
 
COLOR_RESIZE_HANDLE_BORDER - Static variable in class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphCanvasUI
 
COLOR_RESIZE_HANDLE_FILL - Static variable in class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphCanvasUI
 
COLOR_RUN_BUTTON_ICON - Static variable in class org.hkijena.jipipe.ui.grapheditor.general.nodeui.JIPipeGraphNodeUI
 
COLOR_SELECTED - Static variable in class org.hkijena.jipipe.extensions.imageviewer.utils.viewer2d.ImageViewer2DDisplayRangeControl.TrackRenderer
 
COLOR_SELECTED - Static variable in class org.hkijena.jipipe.extensions.imageviewer.utils.viewer3d.ImageViewer3DDisplayRangeControl.TrackRenderer
 
COLOR_SLOT_CACHED - Static variable in class org.hkijena.jipipe.ui.grapheditor.general.nodeui.JIPipeGraphNodeUI
 
COLOR_SLOT_DISCONNECTED - Static variable in class org.hkijena.jipipe.ui.grapheditor.general.nodeui.JIPipeGraphNodeUI
 
COLOR_STRING - Static variable in class org.hkijena.jipipe.extensions.expressions.ui.ExpressionBuilderUI
 
COLOR_UNSELECTED - Static variable in class org.hkijena.jipipe.extensions.imageviewer.utils.viewer2d.ImageViewer2DDisplayRangeControl.TrackRenderer
 
COLOR_UNSELECTED - Static variable in class org.hkijena.jipipe.extensions.imageviewer.utils.viewer3d.ImageViewer3DDisplayRangeControl.TrackRenderer
 
COLOR_VARIABLE - Static variable in class org.hkijena.jipipe.extensions.expressions.ui.ExpressionBuilderUI
 
ColorChooserButton - Class in org.hkijena.jipipe.ui.components
 
ColorChooserButton() - Constructor for class org.hkijena.jipipe.ui.components.ColorChooserButton
 
ColorChooserButton(String) - Constructor for class org.hkijena.jipipe.ui.components.ColorChooserButton
 
ColorChooserButton.ColorChosenEvent - Class in org.hkijena.jipipe.ui.components
 
ColorChooserButton.ColorChosenEventEmitter - Class in org.hkijena.jipipe.ui.components
 
ColorChooserButton.ColorChosenEventListener - Interface in org.hkijena.jipipe.ui.components
 
ColorChosenEvent(ColorChooserButton, Color) - Constructor for class org.hkijena.jipipe.ui.components.ColorChooserButton.ColorChosenEvent
 
ColorChosenEventEmitter() - Constructor for class org.hkijena.jipipe.ui.components.ColorChooserButton.ColorChosenEventEmitter
 
ColorDeserializer - Class in org.hkijena.jipipe.extensions.parameters.library.colors
Deserializer for Color
ColorDeserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.library.colors.ColorDeserializer
 
ColorIcon - Interface in org.hkijena.jipipe.ui.components.icons
 
ColorImageData - Interface in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color
Annotates a data type as color image
ColorListParameter - Class in org.hkijena.jipipe.extensions.parameters.library.colors
 
ColorListParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.library.colors.ColorListParameter
 
ColorListParameter(Collection<Color>) - Constructor for class org.hkijena.jipipe.extensions.parameters.library.colors.ColorListParameter
 
ColorMap - Enum in org.hkijena.jipipe.extensions.parameters.library.colors
All available color maps
ColorMap - Enum in org.hkijena.jipipe.extensions.plots.utils
 
ColorMapEnumItemInfo - Class in org.hkijena.jipipe.extensions.parameters.library.colors
EnumItemInfo implementation for ColorMap
ColorMapEnumItemInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.library.colors.ColorMapEnumItemInfo
Creates a new instance
ColorMapEnumItemInfo - Class in org.hkijena.jipipe.extensions.plots.utils
 
ColorMapEnumItemInfo() - Constructor for class org.hkijena.jipipe.extensions.plots.utils.ColorMapEnumItemInfo
 
ColorMapIcon - Class in org.hkijena.jipipe.extensions.parameters.library.colors
Icon that renders a color map entry
ColorMapIcon() - Constructor for class org.hkijena.jipipe.extensions.parameters.library.colors.ColorMapIcon
Creates a 16x16 black icon
ColorMapIcon(int, int) - Constructor for class org.hkijena.jipipe.extensions.parameters.library.colors.ColorMapIcon
Creates a viridis icon
ColorMapIcon(int, int, ColorMap) - Constructor for class org.hkijena.jipipe.extensions.parameters.library.colors.ColorMapIcon
 
ColorMapIcon - Class in org.hkijena.jipipe.extensions.plots.utils
 
ColorMapIcon(int, int, ColorMap) - Constructor for class org.hkijena.jipipe.extensions.plots.utils.ColorMapIcon
 
ColorMapSupplier - Class in org.hkijena.jipipe.extensions.plots.utils
Provides a color palette
ColorMapSupplier(Paint[]) - Constructor for class org.hkijena.jipipe.extensions.plots.utils.ColorMapSupplier
 
ColorParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.library.colors
Parameter editor for String
ColorParameterEditorUI(JIPipeWorkbench, JIPipeParameterTree, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.library.colors.ColorParameterEditorUI
 
ColorPixel5DExpressionParameterVariablesInfo - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util
Variable source that allows to address x, y
ColorPixel5DExpressionParameterVariablesInfo() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.ColorPixel5DExpressionParameterVariablesInfo
 
ColorRoi3DByNameAlgorithm - Class in org.hkijena.jipipe.extensions.ij3d.nodes.roi3d.modify
 
ColorRoi3DByNameAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.ij3d.nodes.roi3d.modify.ColorRoi3DByNameAlgorithm
Instantiates a new node type.
ColorRoi3DByNameAlgorithm(ColorRoi3DByNameAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.ij3d.nodes.roi3d.modify.ColorRoi3DByNameAlgorithm
Instantiates a new node type.
ColorRoi3DByStatisticsAlgorithm - Class in org.hkijena.jipipe.extensions.ij3d.nodes.roi3d.modify
Wrapper around RoiManager
ColorRoi3DByStatisticsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.ij3d.nodes.roi3d.modify.ColorRoi3DByStatisticsAlgorithm
 
ColorRoi3DByStatisticsAlgorithm(ColorRoi3DByStatisticsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.ij3d.nodes.roi3d.modify.ColorRoi3DByStatisticsAlgorithm
 
ColorRoiByNameAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.roi.modify
 
ColorRoiByNameAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.roi.modify.ColorRoiByNameAlgorithm
Instantiates a new node type.
ColorRoiByNameAlgorithm(ColorRoiByNameAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.roi.modify.ColorRoiByNameAlgorithm
Instantiates a new node type.
ColorRoiByStatisticsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.roi.modify
Wrapper around RoiManager
ColorRoiByStatisticsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.roi.modify.ColorRoiByStatisticsAlgorithm
Instantiates a new node type.
ColorRoiByStatisticsAlgorithm(ColorRoiByStatisticsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.roi.modify.ColorRoiByStatisticsAlgorithm
Instantiates a new node type.
ColorSerializer - Class in org.hkijena.jipipe.extensions.parameters.library.colors
Serializer for Color
ColorSerializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.library.colors.ColorSerializer
 
ColorSpace - Interface in org.hkijena.jipipe.extensions.imagejdatatypes.colorspace
A class that governs conversion between color spaces
ColorSpaceConverterAlgorithm - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.color
 
ColorSpaceConverterAlgorithm(JIPipeNodeInfo, Class<? extends ImagePlusData>) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.color.ColorSpaceConverterAlgorithm
 
ColorSpaceConverterAlgorithm(ColorSpaceConverterAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.color.ColorSpaceConverterAlgorithm
 
ColorThresholdExpression2D - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.threshold.color
 
ColorThresholdExpression2D(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.threshold.color.ColorThresholdExpression2D
 
ColorThresholdExpression2D(ColorThresholdExpression2D) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.threshold.color.ColorThresholdExpression2D
 
ColorToGreyscaleExpression2D - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.color
 
ColorToGreyscaleExpression2D(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.color.ColorToGreyscaleExpression2D
 
ColorToGreyscaleExpression2D(ColorToGreyscaleExpression2D) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.color.ColorToGreyscaleExpression2D
 
colorToHexString(Color) - Static method in class org.hkijena.jipipe.utils.ColorUtils
Converts a color to a Hex string
ColorUtils - Class in org.hkijena.jipipe.utils
 
ColorUtils() - Constructor for class org.hkijena.jipipe.utils.ColorUtils
 
ColorUtils.GradientStop - Class in org.hkijena.jipipe.utils
 
Column() - Constructor for class org.hkijena.jipipe.extensions.multiparameters.nodes.DefineParametersFromTableAlgorithm.Column
 
Column(DefineParametersFromTableAlgorithm.Column) - Constructor for class org.hkijena.jipipe.extensions.multiparameters.nodes.DefineParametersFromTableAlgorithm.Column
 
Column() - Constructor for class org.hkijena.jipipe.extensions.multiparameters.nodes.GenerateParametersFromExpressionAlgorithm.Column
 
Column(GenerateParametersFromExpressionAlgorithm.Column) - Constructor for class org.hkijena.jipipe.extensions.multiparameters.nodes.GenerateParametersFromExpressionAlgorithm.Column
 
column - Variable in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.Index
 
ColumnContentType - Enum in org.hkijena.jipipe.extensions.tables
Available column content types
ColumnOperation - Interface in org.hkijena.jipipe.extensions.tables
An operation on a TableColumn
ColumnOperationAdapterFunction - Class in org.hkijena.jipipe.extensions.expressions.functions
ColumnOperationAdapterFunction(ColumnOperation, String) - Constructor for class org.hkijena.jipipe.extensions.expressions.functions.ColumnOperationAdapterFunction
 
ColumnOperationEntry(String, ColumnOperation, String, String, String) - Constructor for class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry.ColumnOperationEntry
Creates a new entry
ColumnsToAnnotationsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.nodes.columns
 
ColumnsToAnnotationsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.columns.ColumnsToAnnotationsAlgorithm
 
ColumnsToAnnotationsAlgorithm(ColumnsToAnnotationsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.columns.ColumnsToAnnotationsAlgorithm
 
ColumnToNumericAlgorithm - Class in org.hkijena.jipipe.extensions.tables.nodes.columns
Algorithm that removes columns
ColumnToNumericAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.columns.ColumnToNumericAlgorithm
Creates a new instance
ColumnToNumericAlgorithm(ColumnToNumericAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.columns.ColumnToNumericAlgorithm
Creates a copy
ColumnToStringAlgorithm - Class in org.hkijena.jipipe.extensions.tables.nodes.columns
Algorithm that removes columns
ColumnToStringAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.columns.ColumnToStringAlgorithm
Creates a new instance
ColumnToStringAlgorithm(ColumnToStringAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.columns.ColumnToStringAlgorithm
Creates a copy
CombineChannelsToRGBAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.color
 
CombineChannelsToRGBAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.color.CombineChannelsToRGBAlgorithm
 
CombineChannelsToRGBAlgorithm(JIPipeSimpleIteratingAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.color.CombineChannelsToRGBAlgorithm
 
combineSlices(Map<ImageSliceIndex, ImageProcessor>) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Combines the slices in the map into one image.
compare(T, T) - Method in class org.hkijena.jipipe.utils.NaturalOrderComparator
 
comparePlugins(PluginInfo<?>, PluginInfo<?>) - Static method in class org.hkijena.jipipe.JIPipe
Compares two plugins and sorts them by priority
comparePriority(JIPipeParameterAccess, JIPipeParameterAccess) - Static method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess
Compares the priority
compareTo(JIPipeTextAnnotation) - Method in class org.hkijena.jipipe.api.annotation.JIPipeTextAnnotation
 
compareTo(JIPipeDataInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo
 
compareTo(JIPipeMultiIterationStep) - Method in class org.hkijena.jipipe.api.nodes.iterationstep.JIPipeMultiIterationStep
 
compareTo(JIPipeSingleIterationStep) - Method in class org.hkijena.jipipe.api.nodes.iterationstep.JIPipeSingleIterationStep
 
compareTo(JIPipeNotification) - Method in class org.hkijena.jipipe.api.notifications.JIPipeNotification
 
compareTo(JIPipeParameterTypeInfo) - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterTypeInfo
 
compareTo(ConnectVerticesAlgorithm.EdgeCandidate) - Method in class org.hkijena.jipipe.extensions.ijfilaments.nodes.modify.ConnectVerticesAlgorithm.EdgeCandidate
 
compareTo(FixOverlapsNonBranchingAlgorithm.EdgeCandidate) - Method in class org.hkijena.jipipe.extensions.ijfilaments.nodes.process.FixOverlapsNonBranchingAlgorithm.EdgeCandidate
 
compareTo(HoughLines.HoughLine) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.HoughLines.HoughLine
 
compareTo(JIPipeGraphCanvasUI.DisplayedSlotEdge) - Method in class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphCanvasUI.DisplayedSlotEdge
 
compareTo(JIPipeNodeUIActiveArea) - Method in class org.hkijena.jipipe.ui.grapheditor.general.nodeui.JIPipeNodeUIActiveArea
 
compareTo(ColorUtils.GradientStop) - Method in class org.hkijena.jipipe.utils.ColorUtils.GradientStop
 
compareTo(RankedData<T>) - Method in class org.hkijena.jipipe.utils.search.RankedData
 
compareVersions(String, String) - Static method in class org.hkijena.jipipe.utils.StringUtils
Compares two version strings.
compareVersions(String, String) - Static method in class org.hkijena.jipipe.utils.VersionUtils
Similar to StringUtils compareVersions, but supports the 'Development' version
CompartmentAddedEvent(JIPipeProjectCompartment) - Constructor for class org.hkijena.jipipe.api.JIPipeProject.CompartmentAddedEvent
 
CompartmentAddedEventEmitter() - Constructor for class org.hkijena.jipipe.api.JIPipeProject.CompartmentAddedEventEmitter
 
CompartmentNodeTypeCategory - Class in org.hkijena.jipipe.api.compartments.algorithms
 
CompartmentNodeTypeCategory() - Constructor for class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory
 
CompartmentRemovedEvent(JIPipeProjectCompartment, UUID) - Constructor for class org.hkijena.jipipe.api.JIPipeProject.CompartmentRemovedEvent
 
CompartmentRemovedEventEmitter() - Constructor for class org.hkijena.jipipe.api.JIPipeProject.CompartmentRemovedEventEmitter
 
componentHidden(ComponentEvent) - Method in class org.hkijena.jipipe.extensions.imageviewer.ImageViewerPanel3D
 
ComponentListCellRenderer<T extends Component> - Class in org.hkijena.jipipe.ui.components.renderers
 
ComponentListCellRenderer(Icon) - Constructor for class org.hkijena.jipipe.ui.components.renderers.ComponentListCellRenderer
 
componentMoved(ComponentEvent) - Method in class org.hkijena.jipipe.extensions.imageviewer.ImageViewerPanel3D
 
componentResized(ComponentEvent) - Method in class org.hkijena.jipipe.extensions.imageviewer.ImageViewerPanel3D
 
componentShown(ComponentEvent) - Method in class org.hkijena.jipipe.extensions.imageviewer.ImageViewerPanel3D
 
composePixel(int...) - Method in interface org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.ColorSpace
Converts an array of channel values into a pixel
composePixel(int...) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.GreyscaleColorSpace
 
composePixel(int...) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.HSBColorSpace
 
composePixel(int...) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.IgnoreColorSpace
 
composePixel(int...) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.LABColorSpace
 
composePixel(int...) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.RGBColorSpace
 
CompositeLayer(int) - Constructor for class org.hkijena.jipipe.extensions.imageviewer.ImageViewerPanel2D.CompositeLayer
 
CompositeLayer(ImageViewerPanel2D.CompositeLayer) - Constructor for class org.hkijena.jipipe.extensions.imageviewer.ImageViewerPanel2D.CompositeLayer
 
CompositeManagerPlugin2D - Class in org.hkijena.jipipe.extensions.imageviewer.plugins2d
 
CompositeManagerPlugin2D(JIPipeImageViewer) - Constructor for class org.hkijena.jipipe.extensions.imageviewer.plugins2d.CompositeManagerPlugin2D
 
computeDefaultBarWidth() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.calibration.ScaleBarGenerator
There is no hard codded value for the width of the scalebar, when the plugin is called for the first time in an ImageJ instance, a defautl value for the width will be computed by this method.
computeEdgeFeatures(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.ijtrackmate.datatypes.TrackCollectionData
 
computeFileSHA1(File) - Static method in class org.hkijena.jipipe.utils.PathUtils
Computes the SHA1 of a file
computeTrackFeatures(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.ijtrackmate.datatypes.TrackCollectionData
 
ConcatenateByParameter - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
Applies subfolder navigation to each input folder
ConcatenateByParameter(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ConcatenateByParameter
 
ConcatenateByParameter(ConcatenateByParameter) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ConcatenateByParameter
Copies the algorithm
ConcatenatePaths - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
Applies subfolder navigation to each input folder
ConcatenatePaths(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ConcatenatePaths
 
ConcatenatePaths(ConcatenatePaths) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ConcatenatePaths
Copies the algorithm
ConditionalInverterAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.binary
 
ConditionalInverterAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.binary.ConditionalInverterAlgorithm
 
ConditionalInverterAlgorithm(ConditionalInverterAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.binary.ConditionalInverterAlgorithm
 
ConditionalInverterAlgorithm.VariablesInfo - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.binary
 
Configuration() - Constructor for class org.hkijena.jipipe.extensions.cellpose.installers.MinicondaCellposeEnvInstaller.Configuration
 
Configuration() - Constructor for class org.hkijena.jipipe.extensions.cellpose.installers.MinicondaCellposeGPUEnvInstaller.Configuration
 
Configuration() - Constructor for class org.hkijena.jipipe.extensions.cellpose.installers.PortableCellposeEnvInstaller.Configuration
 
Configuration() - Constructor for class org.hkijena.jipipe.extensions.cellpose.installers.PortableCellposeGPUEnvInstaller.Configuration
 
Configuration() - Constructor for class org.hkijena.jipipe.extensions.python.installers.BasicMinicondaEnvPythonInstaller.Configuration
 
Configuration() - Constructor for class org.hkijena.jipipe.extensions.python.installers.BasicPortableEnvPythonInstaller.Configuration
 
Configuration() - Constructor for class org.hkijena.jipipe.extensions.python.installers.MinicondaEnvPythonInstaller.Configuration
 
Configuration() - Constructor for class org.hkijena.jipipe.extensions.python.installers.PortableEnvPythonInstaller.Configuration
 
Configuration() - Constructor for class org.hkijena.jipipe.extensions.python.installers.SelectCondaEnvPythonInstaller.Configuration
 
Configuration() - Constructor for class org.hkijena.jipipe.extensions.python.installers.SelectSystemPythonInstaller.Configuration
 
Configuration() - Constructor for class org.hkijena.jipipe.extensions.python.installers.SelectVirtualEnvPythonInstaller.Configuration
 
Configuration() - Constructor for class org.hkijena.jipipe.extensions.r.installers.REnvInstaller.Configuration
 
configure(ImageJExportParameters) - Method in class org.hkijena.jipipe.extensions.parameters.library.references.ImageJDataExportOperationRef
Overrides parameters if enabled
configure(ImageJImportParameters) - Method in class org.hkijena.jipipe.extensions.parameters.library.references.ImageJDataImportOperationRef
Overrides parameters if enabled
configure() - Method in class org.hkijena.jipipe.extensions.python.installers.BasicMinicondaEnvPythonInstaller
UI configuration
configure() - Method in class org.hkijena.jipipe.extensions.python.installers.BasicPortableEnvPythonInstaller
UI configuration
configureDefaultImageJAdapters(Class<? extends JIPipeData>, String, String) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaPlugin
Sets the default ImageJ adapters
configureDefaultImageJAdapters(Class<? extends JIPipeData>, ImageJDataImporter, ImageJDataExporter) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaPlugin
Sets the default ImageJ adapters
ConfigureJIPipeNode - Annotation Type in org.hkijena.jipipe.api
Annotations used for organizing elements
confirmResetParameters(JIPipeWorkbench, String) - Static method in class org.hkijena.jipipe.utils.UIUtils
 
ConflictDialog - Class in org.hkijena.jipipe.ui.ijupdater
Copy of ConflictDialog because the original one expects an UpdaterFrame
ConflictDialog(Window, String) - Constructor for class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
conflictList - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
conflicts - Variable in class org.hkijena.jipipe.ui.ijupdater.ResolveDependencies
 
connect(JIPipeDataSlot, JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Connects an output slot to an input slot.
connect(JIPipeDataSlot, JIPipeDataSlot, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Connects an output slot to an input slot.
connectCompartments(JIPipeProjectCompartment, JIPipeProjectCompartment) - Method in class org.hkijena.jipipe.api.JIPipeProject
Connects two compartments
connectDismissTo(JIPipeNotificationInbox) - Method in class org.hkijena.jipipe.api.notifications.JIPipeNotificationInbox
Connects all dismisses in this notification inbox to another notification inbox
connectedComponents3D(ImagePlus, Neighborhood3D, int) - Static method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.ImageJAlgorithmUtils
 
ConnectedComponentsLabeling2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.binary
 
ConnectedComponentsLabeling2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.binary.ConnectedComponentsLabeling2DAlgorithm
Instantiates a new node type.
ConnectedComponentsLabeling2DAlgorithm(ConnectedComponentsLabeling2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.binary.ConnectedComponentsLabeling2DAlgorithm
Instantiates a new node type.
ConnectedComponentsLabeling3DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.binary
 
ConnectedComponentsLabeling3DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.binary.ConnectedComponentsLabeling3DAlgorithm
Instantiates a new node type.
ConnectedComponentsLabeling3DAlgorithm(ConnectedComponentsLabeling3DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.binary.ConnectedComponentsLabeling3DAlgorithm
Instantiates a new node type.
ConnectHighlight(JIPipeNodeUISlotActiveArea, JIPipeNodeUISlotActiveArea) - Constructor for class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphCanvasUI.ConnectHighlight
 
connectSlot(JIPipeDataSlot, JIPipeDataSlot) - Method in class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphCanvasUI
Connects the two slots
ConnectVerticesAlgorithm - Class in org.hkijena.jipipe.extensions.ijfilaments.nodes.modify
 
ConnectVerticesAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.ijfilaments.nodes.modify.ConnectVerticesAlgorithm
 
ConnectVerticesAlgorithm(ConnectVerticesAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.ijfilaments.nodes.modify.ConnectVerticesAlgorithm
 
ConnectVerticesAlgorithm.EdgeCandidate - Class in org.hkijena.jipipe.extensions.ijfilaments.nodes.modify
 
CONSTANT_E - Static variable in class org.hkijena.jipipe.extensions.expressions.JIPipeExpressionEvaluator
 
CONSTANT_FALSE - Static variable in class org.hkijena.jipipe.extensions.expressions.JIPipeExpressionEvaluator
 
CONSTANT_NAN - Static variable in class org.hkijena.jipipe.extensions.expressions.JIPipeExpressionEvaluator
 
CONSTANT_NEGATIVE_INFINITY - Static variable in class org.hkijena.jipipe.extensions.expressions.JIPipeExpressionEvaluator
 
CONSTANT_NEWLINE - Static variable in class org.hkijena.jipipe.extensions.expressions.JIPipeExpressionEvaluator
 
CONSTANT_NULL - Static variable in class org.hkijena.jipipe.extensions.expressions.JIPipeExpressionEvaluator
 
CONSTANT_PI - Static variable in class org.hkijena.jipipe.extensions.expressions.JIPipeExpressionEvaluator
 
CONSTANT_POSITIVE_INFINITY - Static variable in class org.hkijena.jipipe.extensions.expressions.JIPipeExpressionEvaluator
 
CONSTANT_TAU - Static variable in class org.hkijena.jipipe.extensions.expressions.JIPipeExpressionEvaluator
 
CONSTANT_TRUE - Static variable in class org.hkijena.jipipe.extensions.expressions.JIPipeExpressionEvaluator
 
ConstantSpotSegmentation3DAlgorithm - Class in org.hkijena.jipipe.extensions.ij3d.nodes.segmentation
 
ConstantSpotSegmentation3DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.ij3d.nodes.segmentation.ConstantSpotSegmentation3DAlgorithm
 
ConstantSpotSegmentation3DAlgorithm(ConstantSpotSegmentation3DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.ij3d.nodes.segmentation.ConstantSpotSegmentation3DAlgorithm
 
containingCollection(Class<? extends JIPipeParameterCollection>) - Static method in class org.hkijena.jipipe.extensions.parameters.library.collections.ParameterCollectionList
Creates an instance from a template collection class.
containingSingle(Class<?>) - Static method in class org.hkijena.jipipe.extensions.parameters.library.collections.ParameterCollectionList
Creates an instance that contains a parameter of a specific value
contains(Object) - Method in class org.hkijena.jipipe.api.data.serialization.JIPipeDataTableMetadata
 
contains(Object) - Method in class org.hkijena.jipipe.extensions.scene3d.datatypes.Scene3DData
 
containsAll(Collection<?>) - Method in class org.hkijena.jipipe.api.data.serialization.JIPipeDataTableMetadata
 
containsAll(Collection<?>) - Method in class org.hkijena.jipipe.extensions.scene3d.datatypes.Scene3DData
 
containsColumn(String) - Method in class org.hkijena.jipipe.extensions.parameters.library.table.ParameterTable
 
containsColumn(String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Returns true if the column exists
containsKey(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
Returns true if there is a parameter with given key
containsNode(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Returns true if this graph contains the algorithm
containsNode(JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Returns true if the slot is in this graph
containsNode(UUID) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
 
containsOnlyRoisOfType(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Returns if this ROI list only contains ROI of given type
ContainsOperator - Class in org.hkijena.jipipe.extensions.expressions.operators
Operator that tests if the left string is contained in the right string
ContainsOperator(int) - Constructor for class org.hkijena.jipipe.extensions.expressions.operators.ContainsOperator
 
ContainsOperator2 - Class in org.hkijena.jipipe.extensions.expressions.operators
Operator that tests if the left string is contained in the right string
ContainsOperator2(int) - Constructor for class org.hkijena.jipipe.extensions.expressions.operators.ContainsOperator2
 
ContainsStringPredicateFunction - Class in org.hkijena.jipipe.extensions.expressions.functions
 
ContainsStringPredicateFunction() - Constructor for class org.hkijena.jipipe.extensions.expressions.functions.ContainsStringPredicateFunction
 
contentAdded(Content) - Method in class org.hkijena.jipipe.extensions.imageviewer.ImageViewerPanel3D
 
contentChanged(Content) - Method in class org.hkijena.jipipe.extensions.imageviewer.ImageViewerPanel3D
 
contentRemoved(Content) - Method in class org.hkijena.jipipe.extensions.imageviewer.ImageViewerPanel3D
 
contentSelected(Content) - Method in class org.hkijena.jipipe.extensions.imageviewer.ImageViewerPanel3D
 
context() - Method in class org.hkijena.jipipe.ui.components.SplashScreen
 
context() - Method in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI
 
context() - Method in class org.hkijena.jipipe.ui.parameters.ParameterPanel
 
ContinueOnFailureSettings() - Constructor for class org.hkijena.jipipe.api.runtimepartitioning.JIPipeRuntimePartition.ContinueOnFailureSettings
 
ContinueOnFailureSettings(JIPipeRuntimePartition.ContinueOnFailureSettings) - Constructor for class org.hkijena.jipipe.api.runtimepartitioning.JIPipeRuntimePartition.ContinueOnFailureSettings
 
Contrast(ImageProcessor, int, boolean) - Static method in class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.threshold.local.ContrastLocalAutoThreshold2DAlgorithm
 
ContrastEnhancerSettings() - Constructor for class org.hkijena.jipipe.extensions.clij2.CLIJSettings.ContrastEnhancerSettings
 
ContrastLocalAutoThreshold2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.nodes.threshold.local
Segmenter node that thresholds via an auto threshold Based on code from Auto_Local_Threshold
ContrastLocalAutoThreshold2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.threshold.local.ContrastLocalAutoThreshold2DAlgorithm
 
ContrastLocalAutoThreshold2DAlgorithm(ContrastLocalAutoThreshold2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.nodes.threshold.local.ContrastLocalAutoThreshold2DAlgorithm
Copies the algorithm
CONTROL_HIGHLIGHTED - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
 
CONTROL_STYLE_CHECKBOX - Static variable in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI
 
CONTROL_STYLE_LIST - Static variable in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI
 
CONTROL_STYLE_PANEL - Static variable in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI
 
CONTROL_TEXT_COLOR - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
 
CONTROL_TEXT_COLOR - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
 
CONTROL_TOGGLED - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
 
convert(JIPipeData, JIPipeProgressInfo) - Method in interface org.hkijena.jipipe.api.data.JIPipeDataConverter
Converts the supported input type to the output type
convert(Class<? extends JIPipeData>, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Converts this data table in-place and sets the accepted data type
convert(JIPipeData, Class<T>, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry
Converts the input data to the output data type
convert(JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ImplicitResultsTableDataConverter
 
convert(JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageToImagePlusDataConverter
 
convert(JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.ImagePlusDataToCLIJImageDataConverter
 
convert(Object) - Method in class org.hkijena.jipipe.extensions.expressions.functions.convert.ToBooleanFunction
 
convert(Object) - Method in class org.hkijena.jipipe.extensions.expressions.functions.convert.ToIntegerFunction
 
convert(Object) - Method in class org.hkijena.jipipe.extensions.expressions.functions.convert.ToNumber2Function
 
convert(Object) - Method in class org.hkijena.jipipe.extensions.expressions.functions.convert.ToNumberFunction
 
convert(JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ImplicitPathTypeConverter
 
convert(JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.ijfilaments.datatypes.FilamentsToRoi3dDataTypeConverter
 
convert(JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.ijfilaments.datatypes.FilamentsToRoiDataTypeConverter
 
convert(JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.ijtrackmate.nodes.converters.SpotsToRoiConverter
 
convert(JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagej2.converters.ImageJ1ToImageJ2Converter
 
convert(JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagej2.converters.ImageJ2ToImageJ1Converter
 
convert(JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePlusToOMEImageTypeConverter
 
convert(JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImageToLUTTypeConverter
 
convert(JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImplicitImageTypeConverter
 
convert(JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.LUTToImageTypeConverter
 
convert(JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OMEImageToImagePlusTypeConverter
 
convert(JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OmeImageToOMEXMLTypeConverter
 
convert(JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OMEImageToROITypeConverter
 
convert(JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.PlotToImageTypeConverter
 
convert(ImagePlus, ColorSpace, JIPipeProgressInfo) - Method in interface org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.ColorSpace
Converts the image into the current color space
convert(int, ColorSpace) - Method in interface org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.ColorSpace
Converts a single pixel from its source image space into this one
convert(ImagePlus, ColorSpace, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.GreyscaleColorSpace
 
convert(int, ColorSpace) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.GreyscaleColorSpace
 
convert(ImagePlus, ColorSpace, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.HSBColorSpace
 
convert(int, ColorSpace) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.HSBColorSpace
 
convert(ImagePlus, ColorSpace, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.IgnoreColorSpace
 
convert(int, ColorSpace) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.IgnoreColorSpace
 
convert(ImagePlus, ColorSpace, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.LABColorSpace
 
convert(int, ColorSpace) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.LABColorSpace
 
convert(ImagePlus, ColorSpace, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.RGBColorSpace
 
convert(int, ColorSpace) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.RGBColorSpace
 
convert(JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imp.datatypes.ImageJImageToImpImageDataTypeConverter
 
convert(JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imp.datatypes.ImpImageToImageJImageDataTypeConverter
 
convert(JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.multiparameters.converters.ParametersDataToResultsTableDataConverter
 
convert(JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.plots.converters.PlotToTableConverter
 
convert(JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.strings.StringDataConverter
 
convert(JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.DoubleArrayColumnToTableConverter
 
convert(JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.tables.StringArrayColumnToTableConverter
 
convert(JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.utils.datatypes.PathDataToJIPipeOutputConverter
 
convert3ChannelToRGBIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Converts an ImagePlus to the color space of this data.
convertAlphaToCheckerboard(Image, int) - Static method in class org.hkijena.jipipe.utils.BufferedImageUtils
 
convertAlphaToCheckerboard(Image, int, Color, Color) - Static method in class org.hkijena.jipipe.utils.BufferedImageUtils
 
ConvertAnnotationTableToAnnotatedTables - Class in org.hkijena.jipipe.extensions.tables.nodes.annotations
Algorithm that integrates columns
ConvertAnnotationTableToAnnotatedTables(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.annotations.ConvertAnnotationTableToAnnotatedTables
Creates a new instance
ConvertAnnotationTableToAnnotatedTables(ConvertAnnotationTableToAnnotatedTables) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.annotations.ConvertAnnotationTableToAnnotatedTables
Creates a copy
ConvertColumnsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.nodes.columns
Algorithm that integrates columns
ConvertColumnsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.columns.ConvertColumnsAlgorithm
Creates a new instance
ConvertColumnsAlgorithm(ConvertColumnsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.columns.ConvertColumnsAlgorithm
Creates a copy
ConvertDataToOutputPath - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
Applies subfolder navigation to each input folder
ConvertDataToOutputPath(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ConvertDataToOutputPath
 
ConvertDataToOutputPath(ConvertDataToOutputPath) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ConvertDataToOutputPath
Copies the algorithm
convertDisplayOperationsToImportOperations() - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry
Converts all registered JIPipeDataDisplayOperation entries into JIPipeDataImportOperation
ConverterAlgorithm - Class in org.hkijena.jipipe.extensions.utils.algorithms
Algorithm that converts any type to any other type
ConverterAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.ConverterAlgorithm
 
ConverterAlgorithm(JIPipeSimpleIteratingAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.ConverterAlgorithm
 
ConvertFilamentsTo3DMeshAlgorithm - Class in org.hkijena.jipipe.extensions.ijfilaments.nodes.convert
 
ConvertFilamentsTo3DMeshAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.ijfilaments.nodes.convert.ConvertFilamentsTo3DMeshAlgorithm
 
ConvertFilamentsTo3DMeshAlgorithm(ConvertFilamentsTo3DMeshAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.ijfilaments.nodes.convert.ConvertFilamentsTo3DMeshAlgorithm
 
ConvertFilamentsToLabelsAlgorithm - Class in org.hkijena.jipipe.extensions.ijfilaments.nodes.convert
 
ConvertFilamentsToLabelsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.ijfilaments.nodes.convert.ConvertFilamentsToLabelsAlgorithm
 
ConvertFilamentsToLabelsAlgorithm(ConvertFilamentsToLabelsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.ijfilaments.nodes.convert.ConvertFilamentsToLabelsAlgorithm
 
ConvertFilamentsToMaskAlgorithm - Class in org.hkijena.jipipe.extensions.ijfilaments.nodes.convert
 
ConvertFilamentsToMaskAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.ijfilaments.nodes.convert.ConvertFilamentsToMaskAlgorithm
 
ConvertFilamentsToMaskAlgorithm(ConvertFilamentsToMaskAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.ijfilaments.nodes.convert.ConvertFilamentsToMaskAlgorithm
 
ConvertFilamentsToRGBAlgorithm - Class in org.hkijena.jipipe.extensions.ijfilaments.nodes.convert
 
ConvertFilamentsToRGBAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.ijfilaments.nodes.convert.ConvertFilamentsToRGBAlgorithm
 
ConvertFilamentsToRGBAlgorithm(ConvertFilamentsToRGBAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.ijfilaments.nodes.convert.ConvertFilamentsToRGBAlgorithm
 
ConvertFilamentsToRoi3DAlgorithm - Class in org.hkijena.jipipe.extensions.ijfilaments.nodes.convert
 
ConvertFilamentsToRoi3DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.ijfilaments.nodes.convert.ConvertFilamentsToRoi3DAlgorithm
 
ConvertFilamentsToRoi3DAlgorithm(ConvertFilamentsToRoi3DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.ijfilaments.nodes.convert.ConvertFilamentsToRoi3DAlgorithm
 
ConvertFilamentsToRoiAlgorithm - Class in org.hkijena.jipipe.extensions.ijfilaments.nodes.convert
 
ConvertFilamentsToRoiAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.ijfilaments.nodes.convert.ConvertFilamentsToRoiAlgorithm
 
ConvertFilamentsToRoiAlgorithm(ConvertFilamentsToRoiAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.ijfilaments.nodes.convert.ConvertFilamentsToRoiAlgorithm
 
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColorData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColorHSBData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColorLABData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColorRGBData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color.ImagePlus2DColorData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color.ImagePlus2DColorHSBData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color.ImagePlus2DColorLABData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color.ImagePlus2DColorRGBData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscale16UData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscale32FData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscale8UData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscaleData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscaleMaskData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.ImagePlus2DData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color.ImagePlus3DColorData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color.ImagePlus3DColorHSBData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color.ImagePlus3DColorLABData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color.ImagePlus3DColorRGBData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscale16UData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscale32FData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscale8UData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscaleData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscaleMaskData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.ImagePlus3DData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color.ImagePlus4DColorData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color.ImagePlus4DColorHSBData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color.ImagePlus4DColorLABData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color.ImagePlus4DColorRGBData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscale16UData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscale32FData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscale8UData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscaleData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscaleMaskData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.ImagePlus4DData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color.ImagePlus5DColorData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color.ImagePlus5DColorHSBData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color.ImagePlus5DColorLABData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color.ImagePlus5DColorRGBData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscale16UData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscale32FData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscale8UData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscaleData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscaleMaskData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.ImagePlus5DData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT2DData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT3DData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT4DData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT5DData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFTData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale16UData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale32FData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale8UData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscaleData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscaleMaskData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData
Converts the incoming image data into the current format.
convertFromJIPipeToModule(IntegerList) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.arrays.ByteArrayParameterImageJ2ModuleInput
 
convertFromJIPipeToModule(DoubleList) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.arrays.DoubleArrayParameterImageJ2ModuleInput
 
convertFromJIPipeToModule(DoubleList) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.arrays.FloatArrayParameterImageJ2ModuleInput
 
convertFromJIPipeToModule(IntegerList) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.arrays.IntegerArrayParameterImageJ2ModuleInput
 
convertFromJIPipeToModule(LongList) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.arrays.LongArrayParameterImageJ2ModuleInput
 
convertFromJIPipeToModule(IntegerList) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.arrays.ShortArrayParameterImageJ2ModuleInput
 
convertFromJIPipeToModule(StringList) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.arrays.StringArrayParameterImageJ2ModuleInput
 
convertFromJIPipeToModule(JIPipeType) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.ParameterImageJ2ModuleInput
 
convertFromJIPipeToModule(Boolean) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.BooleanParameterImageJ2ModuleInput
 
convertFromJIPipeToModule(Byte) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.ByteParameterImageJ2ModuleInput
 
convertFromJIPipeToModule(Double) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.DoubleParameterImageJ2ModuleInput
 
convertFromJIPipeToModule(Float) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.FloatParameterImageJ2ModuleInput
 
convertFromJIPipeToModule(Integer) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.IntegerParameterImageJ2ModuleInput
 
convertFromJIPipeToModule(Long) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.LongParameterImageJ2ModuleInput
 
convertFromJIPipeToModule(Short) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.ShortParameterImageJ2ModuleInput
 
convertFromJIPipeToModule(String) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.StringParameterImageJ2ModuleInput
 
convertFromJIPipeToModule(Double) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.RealTypeParameterImageJ2ModuleInput
 
convertFromJIPipeToModule(JIPipeType) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.ParameterImageJ2ModuleOutput
 
convertFromJIPipeToModule(Boolean) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.primitives.BooleanParameterImageJ2ModuleOutput
 
convertFromJIPipeToModule(Byte) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.primitives.ByteParameterImageJ2ModuleOutput
 
convertFromJIPipeToModule(Double) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.primitives.DoubleParameterImageJ2ModuleOutput
 
convertFromJIPipeToModule(Float) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.primitives.FloatParameterImageJ2ModuleOutput
 
convertFromJIPipeToModule(Integer) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.primitives.IntegerParameterImageJ2ModuleOutput
 
convertFromJIPipeToModule(Long) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.primitives.LongParameterImageJ2ModuleOutput
 
convertFromJIPipeToModule(Short) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.primitives.ShortParameterImageJ2ModuleOutput
 
convertFromJIPipeToModule(String) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.primitives.StringParameterImageJ2ModuleOutput
 
convertFromJIPipeToModule(Double) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.RealTypeParameterImageJ2ModuleOutput
 
convertFromModuleToJIPipe(byte[]) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.arrays.ByteArrayParameterImageJ2ModuleInput
 
convertFromModuleToJIPipe(double[]) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.arrays.DoubleArrayParameterImageJ2ModuleInput
 
convertFromModuleToJIPipe(float[]) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.arrays.FloatArrayParameterImageJ2ModuleInput
 
convertFromModuleToJIPipe(int[]) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.arrays.IntegerArrayParameterImageJ2ModuleInput
 
convertFromModuleToJIPipe(long[]) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.arrays.LongArrayParameterImageJ2ModuleInput
 
convertFromModuleToJIPipe(short[]) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.arrays.ShortArrayParameterImageJ2ModuleInput
 
convertFromModuleToJIPipe(String[]) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.arrays.StringArrayParameterImageJ2ModuleInput
 
convertFromModuleToJIPipe(ModuleType) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.ParameterImageJ2ModuleInput
 
convertFromModuleToJIPipe(Boolean) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.BooleanParameterImageJ2ModuleInput
 
convertFromModuleToJIPipe(Byte) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.ByteParameterImageJ2ModuleInput
 
convertFromModuleToJIPipe(Double) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.DoubleParameterImageJ2ModuleInput
 
convertFromModuleToJIPipe(Float) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.FloatParameterImageJ2ModuleInput
 
convertFromModuleToJIPipe(Integer) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.IntegerParameterImageJ2ModuleInput
 
convertFromModuleToJIPipe(Long) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.LongParameterImageJ2ModuleInput
 
convertFromModuleToJIPipe(Short) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.ShortParameterImageJ2ModuleInput
 
convertFromModuleToJIPipe(String) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.StringParameterImageJ2ModuleInput
 
convertFromModuleToJIPipe(RealType) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.RealTypeParameterImageJ2ModuleInput
 
convertFromModuleToJIPipe(ModuleType) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.ParameterImageJ2ModuleOutput
 
convertFromModuleToJIPipe(Boolean) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.primitives.BooleanParameterImageJ2ModuleOutput
 
convertFromModuleToJIPipe(Byte) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.output