public class MergingPythonScriptAlgorithm extends JIPipeMergingAlgorithm
JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.BaseDirectoryChangedEventEmitter, JIPipeGraphNode.BaseDirectoryChangedEventListener, JIPipeGraphNode.NodeSlotsChangedEvent, JIPipeGraphNode.NodeSlotsChangedEventEmitter, JIPipeGraphNode.NodeSlotsChangedEventListener, JIPipeGraphNode.Serializer
JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterChangedEventEmitter, JIPipeParameterCollection.ParameterChangedEventListener, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEventEmitter, JIPipeParameterCollection.ParameterStructureChangedEventListener, JIPipeParameterCollection.ParameterUIChangedEvent, JIPipeParameterCollection.ParameterUIChangedEventEmitter, JIPipeParameterCollection.ParameterUIChangedEventListener
SLOT_PARAMETERS
Constructor and Description |
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MergingPythonScriptAlgorithm(JIPipeNodeInfo info)
Creates a new instance
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MergingPythonScriptAlgorithm(MergingPythonScriptAlgorithm other)
Creates a copy
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createUIInputSlotIconDescriptionMenuItems, generateDataBatchesGenerationResult, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getIgnoredAnnotationColumns, getParallelizationBatchSize, getUIInputSlotIcon, getUIInputSlotIconBaseDimensions, isParameterUIVisible, isParameterUIVisible, runParameterSet, runPassThrough, supportsParallelization
getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, onParameterChanged, run
canAutoPassThrough, canPassThrough, functionallyEquals, getDefaultCustomExpressionVariables, getRuntimePartition, isEnabled, isEnableDefaultCustomExpressionVariables, isPassThrough, isPostprocessor, isPreprocessor, isSkipped, loadExample, runPassThrough, setEnabled, setPassThrough, setRuntimePartition, setSkipped
archiveTo, canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, emitNodeSlotsChangedEvent, fromJson, getAliasIdInParentGraph, getBaseDirectory, getBaseDirectoryChangedEventEmitter, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getCustomName, getDependencies, getDisplayName, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getNodeSlotsChangedEventEmitter, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDataDirs, getProjectDirectory, getRuntimeProject, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getTextDescription, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isUiLocked, isVisibleIn, onSlotConfigurationChanged, renderInputSlots, renderOutputSlots, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setRuntimeProject, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, setUiLocked, toggleSlot, toJson, updateGraphNodeSlots
getParameterChangedEventEmitter, getParameterStructureChangedEventEmitter, getParameterUIChangedEventEmitter, onParameterStructureChanged, onParameterUIChanged, registerSubParameter, registerSubParameters
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
generateDataBatchesDryRun
installUIOverrideParameterEditor, installUIParameterOptions
emitParameterChangedEvent, emitParameterStructureChangedEvent, emitParameterUIChangedEvent, getContextActions, getParameter, getParameterAccess, getParameterChangedEventEmitter, getParameterStructureChangedEventEmitter, getParameterUIChangedEventEmitter, setParameter
generateValidityReport
onParameterUIChanged
onParameterStructureChanged
public MergingPythonScriptAlgorithm(JIPipeNodeInfo info)
info
- the infopublic MergingPythonScriptAlgorithm(MergingPythonScriptAlgorithm other)
other
- the infopublic boolean isCleanUpAfterwards()
public void setCleanUpAfterwards(boolean cleanUpAfterwards)
public OptionalPythonEnvironment getOverrideEnvironment()
public void setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment)
public void getExternalEnvironments(List<JIPipeEnvironment> target)
JIPipeGraphNode
getExternalEnvironments
in class JIPipeGraphNode
target
- the list where the external environments will be gatheredpublic void reportValidity(JIPipeValidationReportContext reportContext, JIPipeValidationReport report)
JIPipeValidatable
reportValidity
in interface JIPipeValidatable
reportValidity
in class JIPipeAlgorithm
reportContext
- the report contextreport
- the report to be added toprotected void runIteration(JIPipeMultiIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
JIPipeMergingAlgorithm
runIteration
in class JIPipeMergingAlgorithm
iterationStep
- The data interfaceiterationContext
- The iteration contextrunContext
- the run contextprogressInfo
- the progress from the runpublic void setBaseDirectory(Path baseDirectory)
JIPipeGraphNode
JIPipeGraphNode.BaseDirectoryChangedEvent
that can be received by JIPipeDataSlot
instances to adapt to the work directory.setBaseDirectory
in class JIPipeGraphNode
baseDirectory
- The work directory. Can be nullpublic PythonScript getCode()
public void setCode(PythonScript code)
public JIPipeDynamicParameterCollection getScriptParameters()
public JIPipeTextAnnotationMergeMode getAnnotationMergeStrategy()
public void setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
protected void onDeserialized(com.fasterxml.jackson.databind.JsonNode node, JIPipeValidationReport issues, JIPipeNotificationInbox notifications)
JIPipeGraphNode
onDeserialized
in class JIPipeAlgorithm
node
- the JSON node where the data was loadedissues
- issues during deserialization. if you want to notify the user about potential issues that can be acted upon, use the notification inboxnotifications
- additional notifications for the user. these can be acted uponCopyright © 2020–2024 Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute (HKI). All rights reserved.