public class BioFormatsImporter extends JIPipeSimpleIteratingAlgorithm
JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.BaseDirectoryChangedEventEmitter, JIPipeGraphNode.BaseDirectoryChangedEventListener, JIPipeGraphNode.NodeSlotsChangedEvent, JIPipeGraphNode.NodeSlotsChangedEventEmitter, JIPipeGraphNode.NodeSlotsChangedEventListener, JIPipeGraphNode.Serializer
JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterChangedEventEmitter, JIPipeParameterCollection.ParameterChangedEventListener, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEventEmitter, JIPipeParameterCollection.ParameterStructureChangedEventListener, JIPipeParameterCollection.ParameterUIChangedEvent, JIPipeParameterCollection.ParameterUIChangedEventEmitter, JIPipeParameterCollection.ParameterUIChangedEventListener
SLOT_PARAMETERS
Constructor and Description |
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BioFormatsImporter(BioFormatsImporter other)
Copies the algorithm
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BioFormatsImporter(JIPipeNodeInfo info) |
createUIInputSlotIconDescriptionMenuItems, generateDataBatchesGenerationResult, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getParallelizationBatchSize, isParameterUIVisible, isParameterUIVisible, reportValidity, runParameterSet, runPassThrough, supportsParallelization
getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, getUIInputSlotIcon, getUIInputSlotIconBaseDimensions, onParameterChanged, run
canAutoPassThrough, canPassThrough, functionallyEquals, getDefaultCustomExpressionVariables, getRuntimePartition, isEnabled, isEnableDefaultCustomExpressionVariables, isPassThrough, isPostprocessor, isPreprocessor, isSkipped, loadExample, onDeserialized, runPassThrough, setEnabled, setPassThrough, setRuntimePartition, setSkipped
archiveTo, canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, emitNodeSlotsChangedEvent, fromJson, getAliasIdInParentGraph, getBaseDirectory, getBaseDirectoryChangedEventEmitter, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getCustomName, getDependencies, getDisplayName, getExternalEnvironments, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getNodeSlotsChangedEventEmitter, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDataDirs, getProjectDirectory, getRuntimeProject, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getTextDescription, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isUiLocked, isVisibleIn, onSlotConfigurationChanged, renderInputSlots, renderOutputSlots, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setRuntimeProject, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, setUiLocked, toggleSlot, toJson, updateGraphNodeSlots
getParameterChangedEventEmitter, getParameterStructureChangedEventEmitter, getParameterUIChangedEventEmitter, onParameterStructureChanged, onParameterUIChanged, registerSubParameter, registerSubParameters
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
generateDataBatchesDryRun
installUIOverrideParameterEditor, installUIParameterOptions
emitParameterChangedEvent, emitParameterStructureChangedEvent, emitParameterUIChangedEvent, getContextActions, getParameter, getParameterAccess, getParameterChangedEventEmitter, getParameterStructureChangedEventEmitter, getParameterUIChangedEventEmitter, setParameter
generateValidityReport
onParameterUIChanged
onParameterStructureChanged
public BioFormatsImporter(JIPipeNodeInfo info)
info
- the infopublic BioFormatsImporter(BioFormatsImporter other)
other
- the originalprotected void runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
JIPipeSimpleIteratingAlgorithm
runIteration
in class JIPipeSimpleIteratingAlgorithm
iterationStep
- The data interfaceiterationContext
- the iteration contextrunContext
- the run contextprogressInfo
- the progress info from the runpublic boolean isAutoScale()
public void setAutoScale(boolean autoScale)
public OMEColorMode getColorMode()
public void setColorMode(OMEColorMode colorMode)
public RectangleList getCropRegions()
public void setCropRegions(RectangleList cropRegions)
public ome.xml.model.enums.DimensionOrder getStackOrder()
public void setStackOrder(ome.xml.model.enums.DimensionOrder stackOrder)
public boolean isSplitChannels()
public void setSplitChannels(boolean splitChannels)
public boolean isSplitFocalPlanes()
public void setSplitFocalPlanes(boolean splitFocalPlanes)
public boolean isSplitTimePoints()
public void setSplitTimePoints(boolean splitTimePoints)
public boolean isSwapDimensions()
public void setSwapDimensions(boolean swapDimensions)
public boolean isConcatenate()
public void setConcatenate(boolean concatenate)
public boolean isCrop()
public void setCrop(boolean crop)
public boolean isStitchTiles()
public void setStitchTiles(boolean stitchTiles)
public OptionalTextAnnotationNameParameter getTitleAnnotation()
public void setTitleAnnotation(OptionalTextAnnotationNameParameter titleAnnotation)
public boolean isExtractRois()
public void setExtractRois(boolean extractRois)
public boolean isOpenAllSeries()
public void setOpenAllSeries(boolean openAllSeries)
public IntegerList getSeriesToImport()
public void setSeriesToImport(IntegerList seriesToImport)
public OptionalTextAnnotationNameParameter getSeriesAnnotation()
public void setSeriesAnnotation(OptionalTextAnnotationNameParameter seriesAnnotation)
public void setToExample(JIPipeWorkbench parent)
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