@Deprecated public class SplitChannelsAlgorithm extends JIPipeSimpleIteratingAlgorithm
ChannelSplitter
JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.BaseDirectoryChangedEventEmitter, JIPipeGraphNode.BaseDirectoryChangedEventListener, JIPipeGraphNode.NodeSlotsChangedEvent, JIPipeGraphNode.NodeSlotsChangedEventEmitter, JIPipeGraphNode.NodeSlotsChangedEventListener, JIPipeGraphNode.Serializer
JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterChangedEventEmitter, JIPipeParameterCollection.ParameterChangedEventListener, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEventEmitter, JIPipeParameterCollection.ParameterStructureChangedEventListener, JIPipeParameterCollection.ParameterUIChangedEvent, JIPipeParameterCollection.ParameterUIChangedEventEmitter, JIPipeParameterCollection.ParameterUIChangedEventListener
SLOT_PARAMETERS
Constructor and Description |
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SplitChannelsAlgorithm(JIPipeNodeInfo info)
Deprecated.
Instantiates a new node type.
|
SplitChannelsAlgorithm(SplitChannelsAlgorithm other)
Deprecated.
Creates a copy
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Modifier and Type | Method and Description |
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String |
getAnnotationColumnChannelIndex()
Deprecated.
|
String |
getAnnotationColumnSlotName()
Deprecated.
|
OutputSlotMapParameterCollection |
getChannelToSlotAssignment()
Deprecated.
|
int |
getStackIndexInSingleChannel(ij.ImagePlus image,
int slice,
int frame)
Deprecated.
|
boolean |
isAnnotateWithChannelIndex()
Deprecated.
|
boolean |
isAnnotateWithSlotName()
Deprecated.
|
boolean |
isIgnoreMissingChannels()
Deprecated.
|
void |
reportValidity(JIPipeValidationReportContext reportContext,
JIPipeValidationReport report)
Deprecated.
Generates a validity report
|
protected void |
runIteration(JIPipeSingleIterationStep iterationStep,
JIPipeIterationContext iterationContext,
JIPipeGraphNodeRunContext runContext,
JIPipeProgressInfo progressInfo)
Deprecated.
Runs code on one data row
|
void |
setAnnotateWithChannelIndex(boolean annotateWithChannelIndex)
Deprecated.
|
void |
setAnnotateWithSlotName(boolean annotateWithSlotName)
Deprecated.
|
void |
setAnnotationColumnChannelIndex(String annotationColumnChannelIndex)
Deprecated.
|
void |
setAnnotationColumnSlotName(String annotationColumnSlotName)
Deprecated.
|
void |
setIgnoreMissingChannels(boolean ignoreMissingChannels)
Deprecated.
|
boolean |
supportsParallelization()
Deprecated.
Indicates to the algorithm base implementation if parallelization is supported.
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createUIInputSlotIconDescriptionMenuItems, generateDataBatchesGenerationResult, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getParallelizationBatchSize, isParameterUIVisible, isParameterUIVisible, runParameterSet, runPassThrough
getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, getUIInputSlotIcon, getUIInputSlotIconBaseDimensions, onParameterChanged, run
canAutoPassThrough, canPassThrough, functionallyEquals, getDefaultCustomExpressionVariables, getRuntimePartition, isEnabled, isEnableDefaultCustomExpressionVariables, isPassThrough, isPostprocessor, isPreprocessor, isSkipped, loadExample, onDeserialized, runPassThrough, setEnabled, setPassThrough, setRuntimePartition, setSkipped
archiveTo, canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, emitNodeSlotsChangedEvent, fromJson, getAliasIdInParentGraph, getBaseDirectory, getBaseDirectoryChangedEventEmitter, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getCustomName, getDependencies, getDisplayName, getExternalEnvironments, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getNodeSlotsChangedEventEmitter, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDataDirs, getProjectDirectory, getRuntimeProject, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getTextDescription, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isUiLocked, isVisibleIn, onSlotConfigurationChanged, renderInputSlots, renderOutputSlots, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setRuntimeProject, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, setUiLocked, toggleSlot, toJson, updateGraphNodeSlots
getParameterChangedEventEmitter, getParameterStructureChangedEventEmitter, getParameterUIChangedEventEmitter, onParameterStructureChanged, onParameterUIChanged, registerSubParameter, registerSubParameters
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
generateDataBatchesDryRun
installUIOverrideParameterEditor, installUIParameterOptions
emitParameterChangedEvent, emitParameterStructureChangedEvent, emitParameterUIChangedEvent, getContextActions, getParameter, getParameterAccess, getParameterChangedEventEmitter, getParameterStructureChangedEventEmitter, getParameterUIChangedEventEmitter, setParameter
generateValidityReport
onParameterUIChanged
onParameterStructureChanged
public SplitChannelsAlgorithm(JIPipeNodeInfo info)
info
- the infopublic SplitChannelsAlgorithm(SplitChannelsAlgorithm other)
other
- the otherpublic boolean supportsParallelization()
JIPipeParallelizedAlgorithm
supportsParallelization
in interface JIPipeParallelizedAlgorithm
supportsParallelization
in class JIPipeSimpleIteratingAlgorithm
protected void runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo)
JIPipeSimpleIteratingAlgorithm
runIteration
in class JIPipeSimpleIteratingAlgorithm
iterationStep
- The data interfaceiterationContext
- the iteration contextrunContext
- the run contextprogressInfo
- the progress info from the runpublic int getStackIndexInSingleChannel(ij.ImagePlus image, int slice, int frame)
public void reportValidity(JIPipeValidationReportContext reportContext, JIPipeValidationReport report)
JIPipeValidatable
reportValidity
in interface JIPipeValidatable
reportValidity
in class JIPipeSimpleIteratingAlgorithm
reportContext
- the report contextreport
- the report to be added topublic OutputSlotMapParameterCollection getChannelToSlotAssignment()
public boolean isIgnoreMissingChannels()
public void setIgnoreMissingChannels(boolean ignoreMissingChannels)
public boolean isAnnotateWithSlotName()
public void setAnnotateWithSlotName(boolean annotateWithSlotName)
public boolean isAnnotateWithChannelIndex()
public void setAnnotateWithChannelIndex(boolean annotateWithChannelIndex)
public String getAnnotationColumnChannelIndex()
public void setAnnotationColumnChannelIndex(String annotationColumnChannelIndex)
public String getAnnotationColumnSlotName()
public void setAnnotationColumnSlotName(String annotationColumnSlotName)
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