Uses of Class
org.hkijena.jipipe.api.parameters.JIPipeParameter

Packages that use JIPipeParameter

Package	Description
org.hkijena.jipipe
org.hkijena.jipipe.api
org.hkijena.jipipe.api.annotation
org.hkijena.jipipe.api.artifacts
org.hkijena.jipipe.api.compartments.algorithms
org.hkijena.jipipe.api.compat
org.hkijena.jipipe.api.data
org.hkijena.jipipe.api.environments
org.hkijena.jipipe.api.grouping
org.hkijena.jipipe.api.grouping.parameters
org.hkijena.jipipe.api.looping
org.hkijena.jipipe.api.nodes
org.hkijena.jipipe.api.nodes.algorithm
org.hkijena.jipipe.api.nodes.annotation
org.hkijena.jipipe.api.project
org.hkijena.jipipe.api.run
org.hkijena.jipipe.api.runtimepartitioning
org.hkijena.jipipe.desktop.app
org.hkijena.jipipe.desktop.app.cache.exporters
org.hkijena.jipipe.desktop.app.ploteditor
org.hkijena.jipipe.desktop.app.quickrun
org.hkijena.jipipe.desktop.app.settings
org.hkijena.jipipe.desktop.app.settings.project
org.hkijena.jipipe.desktop.commons.components
org.hkijena.jipipe.desktop.commons.components.parameters
org.hkijena.jipipe.desktop.commons.components.tabs
org.hkijena.jipipe.plugins.annotation.algorithms
org.hkijena.jipipe.plugins.artifacts
org.hkijena.jipipe.plugins.cellpose
org.hkijena.jipipe.plugins.cellpose.algorithms.cp2
org.hkijena.jipipe.plugins.cellpose.algorithms.cp3
org.hkijena.jipipe.plugins.cellpose.legacy.algorithms
org.hkijena.jipipe.plugins.cellpose.legacy.parameters
org.hkijena.jipipe.plugins.cellpose.parameters.cp2
org.hkijena.jipipe.plugins.cellpose.parameters.cp3
org.hkijena.jipipe.plugins.clij2
org.hkijena.jipipe.plugins.clij2.algorithms
org.hkijena.jipipe.plugins.core.nodes
org.hkijena.jipipe.plugins.dataenvironment
org.hkijena.jipipe.plugins.filesystem
org.hkijena.jipipe.plugins.filesystem.algorithms.local
org.hkijena.jipipe.plugins.filesystem.datasources
org.hkijena.jipipe.plugins.forms.algorithms
org.hkijena.jipipe.plugins.forms.datatypes
org.hkijena.jipipe.plugins.forms.utils
org.hkijena.jipipe.plugins.graphannotation.nodes
org.hkijena.jipipe.plugins.ij3d.imageviewer
org.hkijena.jipipe.plugins.ij3d.nodes.binary
org.hkijena.jipipe.plugins.ij3d.nodes.features
org.hkijena.jipipe.plugins.ij3d.nodes.filters
org.hkijena.jipipe.plugins.ij3d.nodes.overlay
org.hkijena.jipipe.plugins.ij3d.nodes.roi3d
org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.convert
org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.filter
org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.generate
org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.measure
org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.metadata
org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.modify
org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.process
org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.split
org.hkijena.jipipe.plugins.ij3d.nodes.segmentation
org.hkijena.jipipe.plugins.ij3d.utils
org.hkijena.jipipe.plugins.ijfilaments.nodes.convert
org.hkijena.jipipe.plugins.ijfilaments.nodes.filter
org.hkijena.jipipe.plugins.ijfilaments.nodes.generate
org.hkijena.jipipe.plugins.ijfilaments.nodes.modify
org.hkijena.jipipe.plugins.ijfilaments.nodes.process
org.hkijena.jipipe.plugins.ijfilaments.nodes.split
org.hkijena.jipipe.plugins.ijfilaments.nodes.utils
org.hkijena.jipipe.plugins.ijfilaments.parameters
org.hkijena.jipipe.plugins.ijfilaments.settings
org.hkijena.jipipe.plugins.ijfilaments.util
org.hkijena.jipipe.plugins.ijmultitemplatematching
org.hkijena.jipipe.plugins.ijocr.nodes
org.hkijena.jipipe.plugins.ijocr.settings
org.hkijena.jipipe.plugins.ijtrackmate.nodes.converters
org.hkijena.jipipe.plugins.ijtrackmate.nodes.detectors
org.hkijena.jipipe.plugins.ijtrackmate.nodes.spots
org.hkijena.jipipe.plugins.ijtrackmate.nodes.tracks
org.hkijena.jipipe.plugins.ijtrackmate.parameters
org.hkijena.jipipe.plugins.ijtrackmate.settings
org.hkijena.jipipe.plugins.ijtrackmate.utils
org.hkijena.jipipe.plugins.ijweka.nodes
org.hkijena.jipipe.plugins.ijweka.parameters
org.hkijena.jipipe.plugins.ijweka.parameters.collections
org.hkijena.jipipe.plugins.ilastik.nodes
org.hkijena.jipipe.plugins.ilastik.settings
org.hkijena.jipipe.plugins.imagej2
org.hkijena.jipipe.plugins.imagej2.algorithms
org.hkijena.jipipe.plugins.imagej2.datatypes.outofbounds
org.hkijena.jipipe.plugins.imagej2.datatypes.outofbounds.constant
org.hkijena.jipipe.plugins.imagej2.datatypes.shapes
org.hkijena.jipipe.plugins.imagejalgorithms.nodes
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.analyze
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.background
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.binary
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.blur
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.calibration
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.colocalization
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.color
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.contrast
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.convert
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.convolve
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.datasources
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.detect
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.dimensions
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.edge
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.features
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.fft
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.forms
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.generate
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.io
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.labels
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.labels.filter
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.lut
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.masking
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.math
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.math.distancemap
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.math.local
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.metadata
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.misc
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.montage
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.morphology
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.noise
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.ome
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.opticalflow
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.overlay
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.registration.simple
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.registration.turboreg
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.annotations
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.assemble
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.convert
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.draw
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.filter
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.generate
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.measure
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.merge
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.modify
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.properties
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.register
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.sort
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.split
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.segment
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.statistics
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold.color
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold.iterative
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold.local
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.transform
org.hkijena.jipipe.plugins.imagejalgorithms.utils
org.hkijena.jipipe.plugins.imagejdatatypes
org.hkijena.jipipe.plugins.imagejdatatypes.algorithms
org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.annotate
org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.color
org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.io
org.hkijena.jipipe.plugins.imagejdatatypes.converters
org.hkijena.jipipe.plugins.imagejdatatypes.parameters
org.hkijena.jipipe.plugins.imagejdatatypes.settings
org.hkijena.jipipe.plugins.imagejdatatypes.util
org.hkijena.jipipe.plugins.imageviewer.legacy.plugins2d.maskdrawer
org.hkijena.jipipe.plugins.imageviewer.legacy.plugins2d.roimanager
org.hkijena.jipipe.plugins.imageviewer.settings
org.hkijena.jipipe.plugins.imp.nodes
org.hkijena.jipipe.plugins.multiparameters.nodes
org.hkijena.jipipe.plugins.napari
org.hkijena.jipipe.plugins.omero
org.hkijena.jipipe.plugins.omero.nodes.annotate
org.hkijena.jipipe.plugins.omero.nodes.datasources
org.hkijena.jipipe.plugins.omero.nodes.download
org.hkijena.jipipe.plugins.omero.nodes.manage
org.hkijena.jipipe.plugins.omero.nodes.navigate
org.hkijena.jipipe.plugins.omero.nodes.upload
org.hkijena.jipipe.plugins.omero.parameters
org.hkijena.jipipe.plugins.omnipose
org.hkijena.jipipe.plugins.omnipose.algorithms
org.hkijena.jipipe.plugins.omnipose.legacy.algorithms
org.hkijena.jipipe.plugins.omnipose.parameters
org.hkijena.jipipe.plugins.opencv.nodes
org.hkijena.jipipe.plugins.opencv.nodes.filters
org.hkijena.jipipe.plugins.opencv.nodes.generators
org.hkijena.jipipe.plugins.parameters.api.enums
org.hkijena.jipipe.plugins.parameters.library.filesystem
org.hkijena.jipipe.plugins.parameters.library.primitives
org.hkijena.jipipe.plugins.parameters.library.references
org.hkijena.jipipe.plugins.parameters.library.roi
org.hkijena.jipipe.plugins.pipelinerender
org.hkijena.jipipe.plugins.plots.datatypes
org.hkijena.jipipe.plugins.plots.nodes
org.hkijena.jipipe.plugins.processes
org.hkijena.jipipe.plugins.python
org.hkijena.jipipe.plugins.python.adapter
org.hkijena.jipipe.plugins.python.algorithms.jython
org.hkijena.jipipe.plugins.python.algorithms.python
org.hkijena.jipipe.plugins.python.installers
org.hkijena.jipipe.plugins.r
org.hkijena.jipipe.plugins.r.algorithms
org.hkijena.jipipe.plugins.scene3d.model.geometries
org.hkijena.jipipe.plugins.scene3d.nodes
org.hkijena.jipipe.plugins.settings
org.hkijena.jipipe.plugins.strings.datasources
org.hkijena.jipipe.plugins.strings.nodes.json
org.hkijena.jipipe.plugins.strings.nodes.text
org.hkijena.jipipe.plugins.strings.nodes.xml
org.hkijena.jipipe.plugins.tables.nodes
org.hkijena.jipipe.plugins.tables.nodes.annotations
org.hkijena.jipipe.plugins.tables.nodes.columns
org.hkijena.jipipe.plugins.tables.nodes.filter
org.hkijena.jipipe.plugins.tables.nodes.merge
org.hkijena.jipipe.plugins.tables.nodes.rows
org.hkijena.jipipe.plugins.tables.nodes.split
org.hkijena.jipipe.plugins.tables.nodes.statistics
org.hkijena.jipipe.plugins.tables.nodes.transform
org.hkijena.jipipe.plugins.tables.parameters.enums
org.hkijena.jipipe.plugins.utils.algorithms
org.hkijena.jipipe.plugins.utils.algorithms.datatable
org.hkijena.jipipe.plugins.utils.algorithms.distribute
org.hkijena.jipipe.plugins.utils.algorithms.iterationsteps
org.hkijena.jipipe.plugins.utils.algorithms.meta
org.hkijena.jipipe.plugins.utils.algorithms.processes

Uses of JIPipeParameter in org.hkijena.jipipe

Methods in org.hkijena.jipipe with annotations of type JIPipeParameter

Modifier and Type	Method and Description
String	JIPipeMutableDependency.getDependencyId()
String	JIPipeJsonPlugin.getDependencyId()
StringList	JIPipeMutableDependency.getDependencyProvides()
StringList	JIPipeJsonPlugin.getDependencyProvides()
String	JIPipeMutableDependency.getDependencyVersion()
String	JIPipeJsonPlugin.getDependencyVersion()
String	JIPipeImageJUpdateSiteDependency.getDescription()
String	JIPipeImageJUpdateSiteDependency.getMaintainer()
JIPipeStandardMetadata	JIPipeMutableDependency.getMetadata()
JIPipeStandardMetadata	JIPipeJsonPlugin.getMetadata()
String	JIPipeImageJUpdateSiteDependency.getName()
JIPipeImageJUpdateSiteDependency.List	JIPipeJsonPlugin.getUpdateSiteDependenciesParameter()
String	JIPipeImageJUpdateSiteDependency.getUrl()
void	JIPipeMutableDependency.setDependencyId(String dependencyId) Sets the ID
void	JIPipeMutableDependency.setDependencyProvides(StringList dependencyProvides)
void	JIPipeJsonPlugin.setDependencyProvides(StringList dependencyProvides)
void	JIPipeMutableDependency.setDependencyVersion(String dependencyVersion) Sets the version
void	JIPipeImageJUpdateSiteDependency.setDescription(String description)
void	JIPipeJsonPlugin.setId(String id) Sets the ID
void	JIPipeImageJUpdateSiteDependency.setMaintainer(String maintainer)
void	JIPipeImageJUpdateSiteDependency.setName(String name)
void	JIPipeJsonPlugin.setUpdateSiteDependenciesParameter(JIPipeImageJUpdateSiteDependency.List updateSiteDependenciesParameter)
void	JIPipeImageJUpdateSiteDependency.setUrl(String url)
void	JIPipeJsonPlugin.setVersion(String version) Sets the version

Uses of JIPipeParameter in org.hkijena.jipipe.api

Methods in org.hkijena.jipipe.api with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeAuthorMetadata.List	JIPipeStandardMetadata.getAcknowledgements() Gets the list of acknowledged authors
StringList	JIPipeAuthorMetadata.getAffiliations()
JIPipeAuthorMetadata.List	JIPipeStandardMetadata.getAuthors()
Color	JIPipeNodeTemplate.getBorderColor()
PluginCategoriesEnumParameter.List	JIPipeStandardMetadata.getCategories()
String	JIPipeStandardMetadata.getCitation()
String	JIPipeAuthorMetadata.getContact()
HTMLText	JIPipeAuthorMetadata.getCustomText()
String	JIPipeNodeTemplate.getData()
StringList	JIPipeStandardMetadata.getDependencyCitations()
HTMLText	JIPipeNodeTemplate.getDescription()
HTMLText	JIPipeStandardMetadata.getDescription()
Color	JIPipeNodeTemplate.getFillColor()
String	JIPipeAuthorMetadata.getFirstName()
IconRef	JIPipeNodeTemplate.getIcon()
String	JIPipeAuthorMetadata.getLastName()
String	JIPipeStandardMetadata.getLicense()
StringList	JIPipeNodeTemplate.getMenuPath()
String	JIPipeNodeTemplate.getName()
String	JIPipeStandardMetadata.getName()
String	JIPipeAuthorMetadata.getOrcid()
String	JIPipeNodeTemplate.getSource()
HTMLText	JIPipeStandardMetadata.getSummary()
String	JIPipeAuthorMetadata.getTitle()
String	JIPipeAuthorMetadata.getWebsite()
String	JIPipeStandardMetadata.getWebsite()
boolean	JIPipeAuthorMetadata.isCorrespondingAuthor()
boolean	JIPipeAuthorMetadata.isFirstAuthor()
void	JIPipeStandardMetadata.setAcknowledgements(JIPipeAuthorMetadata.List acknowledgements) Sets the list of acknowledged authors
void	JIPipeAuthorMetadata.setAffiliations(StringList affiliations)
void	JIPipeStandardMetadata.setAuthors(JIPipeAuthorMetadata.List authors) Sets the authors
void	JIPipeNodeTemplate.setBorderColor(Color borderColor)
void	JIPipeStandardMetadata.setCategories(PluginCategoriesEnumParameter.List categories)
void	JIPipeStandardMetadata.setCitation(String citation) Sets the citation
void	JIPipeAuthorMetadata.setContact(String contact)
void	JIPipeAuthorMetadata.setCorrespondingAuthor(boolean correspondingAuthor)
void	JIPipeAuthorMetadata.setCustomText(HTMLText customText)
void	JIPipeNodeTemplate.setData(String data)
void	JIPipeStandardMetadata.setDependencyCitations(StringList dependencyCitations)
void	JIPipeNodeTemplate.setDescription(HTMLText description)
void	JIPipeStandardMetadata.setDescription(HTMLText description) Sets the description
void	JIPipeNodeTemplate.setFillColor(Color fillColor)
void	JIPipeAuthorMetadata.setFirstAuthor(boolean firstAuthor)
void	JIPipeAuthorMetadata.setFirstName(String firstName)
void	JIPipeNodeTemplate.setIcon(IconRef icon)
void	JIPipeAuthorMetadata.setLastName(String lastName)
void	JIPipeStandardMetadata.setLicense(String license) Sets the license
void	JIPipeNodeTemplate.setMenuPath(StringList menuPath)
void	JIPipeNodeTemplate.setName(String name)
void	JIPipeStandardMetadata.setName(String name) Sets the name
void	JIPipeAuthorMetadata.setOrcid(String orcid)
void	JIPipeNodeTemplate.setSource(String source)
void	JIPipeStandardMetadata.setSummary(HTMLText summary)
void	JIPipeAuthorMetadata.setTitle(String title)
void	JIPipeAuthorMetadata.setWebsite(String website)
void	JIPipeStandardMetadata.setWebsite(String website) Sets the website

Uses of JIPipeParameter in org.hkijena.jipipe.api.annotation

Methods in org.hkijena.jipipe.api.annotation with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeExpressionParameter	JIPipeDataByMetadataExporter.getFileNameGenerator()
boolean	JIPipeDataByMetadataExporter.isForceName()
boolean	JIPipeDataByMetadataExporter.isMakeFilesystemCompatible()
void	JIPipeDataByMetadataExporter.setFileNameGenerator(JIPipeExpressionParameter fileNameGenerator)
void	JIPipeDataByMetadataExporter.setForceName(boolean forceName)
void	JIPipeDataByMetadataExporter.setMakeFilesystemCompatible(boolean makeFilesystemCompatible)

Uses of JIPipeParameter in org.hkijena.jipipe.api.artifacts

Methods in org.hkijena.jipipe.api.artifacts with annotations of type JIPipeParameter

Modifier and Type	Method and Description
String	JIPipeArtifact.getArtifactId()
String	JIPipeArtifact.getClassifier()
String	JIPipeArtifact.getGroupId()
String	JIPipeArtifactRepositoryReference.getRepository()
JIPipeArtifactRepositoryType	JIPipeArtifactRepositoryReference.getType()
String	JIPipeArtifactRepositoryReference.getUrl()
String	JIPipeArtifact.getVersion()
void	JIPipeArtifact.setArtifactId(String artifactId)
void	JIPipeArtifact.setClassifier(String classifier)
void	JIPipeArtifact.setGroupId(String groupId)
void	JIPipeArtifactRepositoryReference.setRepository(String repository)
void	JIPipeArtifactRepositoryReference.setType(JIPipeArtifactRepositoryType type)
void	JIPipeArtifactRepositoryReference.setUrl(String url)
void	JIPipeArtifact.setVersion(String version)

Uses of JIPipeParameter in org.hkijena.jipipe.api.compartments.algorithms

Methods in org.hkijena.jipipe.api.compartments.algorithms with annotations of type JIPipeParameter

Modifier and Type	Method and Description
GraphNodeParameterReferenceGroupCollection	JIPipeProjectCompartment.getExportedParameters()
String	JIPipeProjectCompartmentOutput.getName()
String	JIPipeProjectCompartmentOutput.getOutputSlotName()
OptionalColorParameter	JIPipeProjectCompartmentOutput.getProjectOverviewColor()
OptionalColorParameter	JIPipeProjectCompartment.getProjectOverviewColor()
boolean	JIPipeProjectCompartmentOutput.isShowInProjectOverview()
boolean	JIPipeProjectCompartment.isShowInProjectOverview()
boolean	JIPipeProjectCompartment.isShowLimitedParameters()
void	JIPipeProjectCompartment.setExportedParameters(GraphNodeParameterReferenceGroupCollection exportedParameters)
void	JIPipeProjectCompartmentOutput.setOutputSlotName(String outputSlotName)
void	JIPipeProjectCompartmentOutput.setProjectOverviewColor(OptionalColorParameter projectOverviewColor)
void	JIPipeProjectCompartment.setProjectOverviewColor(OptionalColorParameter projectOverviewColor)
void	JIPipeProjectCompartmentOutput.setShowInProjectOverview(boolean showInProjectOverview)
void	JIPipeProjectCompartment.setShowInProjectOverview(boolean showInProjectOverview)
void	JIPipeProjectCompartment.setShowLimitedParameters(boolean showLimitedParameters)

Uses of JIPipeParameter in org.hkijena.jipipe.api.compat

Methods in org.hkijena.jipipe.api.compat with annotations of type JIPipeParameter

Modifier and Type	Method and Description
String	ImageJDataExportOperation.getExporterId()
String	ImageJDataImportOperation.getImporterId()
String	ImageJImportParameters.getName()
String	ImageJExportParameters.getName()
boolean	ImageJExportParameters.isActivate()
boolean	ImageJExportParameters.isAppend()
boolean	ImageJImportParameters.isDuplicate()
boolean	ImageJExportParameters.isDuplicate()
boolean	ImageJExportParameters.isNoWindows()
void	ImageJExportParameters.setActivate(boolean activate)
void	ImageJExportParameters.setAppend(boolean append)
void	ImageJImportParameters.setDuplicate(boolean duplicate)
void	ImageJExportParameters.setDuplicate(boolean duplicate)
void	ImageJDataExportOperation.setExporterId(String exporterId)
void	ImageJDataImportOperation.setImporterId(String importerId)
void	ImageJImportParameters.setName(String name)
void	ImageJExportParameters.setName(String name)
void	ImageJExportParameters.setNoWindows(boolean noWindows)

Uses of JIPipeParameter in org.hkijena.jipipe.api.data

Methods in org.hkijena.jipipe.api.data with annotations of type JIPipeParameter

Modifier and Type	Method and Description
String	JIPipeDataSlotInfo.getCustomName()
String	JIPipeDataSlotInfo.getDescription()
boolean	JIPipeDataSlotInfo.isOptional()
boolean	JIPipeDataSlotInfo.isStoreToDisk()
boolean	JIPipeDataSlotInfo.isVirtual()
void	JIPipeDataSlotInfo.setCustomName(String customName) Overrides the name displayed in the UI
void	JIPipeDataSlotInfo.setDescription(String description)
void	JIPipeDataSlotInfo.setOptional(boolean optional)
void	JIPipeDataSlotInfo.setStoreToDisk(boolean storeToDisk)
void	JIPipeDataSlotInfo.setVirtual(boolean virtual)

Uses of JIPipeParameter in org.hkijena.jipipe.api.environments

Methods in org.hkijena.jipipe.api.environments with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeExpressionParameter	JIPipeProcessArtifactEnvironment.getArguments()
JIPipeArtifactQueryParameter	JIPipeArtifactEnvironment.getArtifactQuery()
StringQueryExpressionAndStringPairParameter.List	JIPipeProcessArtifactEnvironment.getEnvironmentVariables()
Path	JIPipeProcessArtifactEnvironment.getExecutablePath()
String	JIPipeEnvironment.getName()
String	JIPipeEnvironment.getSource()
String	JIPipeEnvironment.getVersion()
boolean	JIPipeArtifactEnvironment.isLoadFromArtifact()
void	JIPipeProcessArtifactEnvironment.setArguments(JIPipeExpressionParameter arguments)
void	JIPipeArtifactEnvironment.setArtifactQuery(JIPipeArtifactQueryParameter artifactQuery)
void	JIPipeProcessArtifactEnvironment.setEnvironmentVariables(StringQueryExpressionAndStringPairParameter.List environmentVariables)
void	JIPipeProcessArtifactEnvironment.setExecutablePath(Path executablePath)
void	JIPipeArtifactEnvironment.setLoadFromArtifact(boolean loadFromArtifact)
void	JIPipeEnvironment.setName(String name)
void	JIPipeEnvironment.setSource(String source)
void	JIPipeEnvironment.setVersion(String version)

Uses of JIPipeParameter in org.hkijena.jipipe.api.grouping

Methods in org.hkijena.jipipe.api.grouping with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeMergingAlgorithmIterationStepGenerationSettings	JsonAlgorithm.getBatchGenerationSettings()
JIPipeMergingAlgorithmIterationStepGenerationSettings	JIPipeNodeGroup.getBatchGenerationSettings()
DynamicCategoryEnumParameter	JsonNodeInfo.getCategoryParameter()
NodeGroupContents	JIPipeNodeGroup.getContents()
JIPipeGraphRunPartitionInheritedBoolean	JIPipeNodeGroup.getContinueOnFailureExportFailedInputs()
IconRef	JsonNodeInfo.getCustomIcon()
HTMLText	JsonNodeInfo.getDescription()
GraphNodeParameterReferenceGroupCollection	JIPipeNodeGroup.getExportedParameters()
GraphNodeParameterReferenceGroupCollection	JsonNodeInfo.getExportedParameters()
String	JsonNodeInfo.getId()
JIPipeGraphWrapperAlgorithm.IterationMode	JsonAlgorithm.getIterationMode()
JIPipeGraphWrapperAlgorithm.IterationMode	JIPipeNodeGroup.getIterationMode()
StringList	JsonNodeInfo.getMenuPathList()
String	JsonNodeInfo.getName()
JIPipeGraphRunPartitionInheritedBoolean	JIPipeNodeGroup.isContinueOnFailure()
boolean	JsonNodeInfo.isDeprecated()
boolean	JsonNodeInfo.isHidden()
boolean	JIPipeNodeGroup.isShowLimitedParameters()
void	JsonNodeInfo.setCategoryParameter(DynamicCategoryEnumParameter parameter)
void	JIPipeNodeGroup.setContents(NodeGroupContents contents)
void	JIPipeNodeGroup.setContinueOnFailure(JIPipeGraphRunPartitionInheritedBoolean continueOnFailure)
void	JIPipeNodeGroup.setContinueOnFailureExportFailedInputs(JIPipeGraphRunPartitionInheritedBoolean continueOnFailureExportFailedInputs)
void	JsonNodeInfo.setCustomIcon(IconRef customIcon)
void	JsonNodeInfo.setDeprecated(boolean deprecated)
void	JsonNodeInfo.setDescription(HTMLText description)
void	JIPipeNodeGroup.setExportedParameters(GraphNodeParameterReferenceGroupCollection exportedParameters)
void	JsonNodeInfo.setExportedParameters(GraphNodeParameterReferenceGroupCollection exportedParameters)
void	JsonNodeInfo.setHidden(boolean hidden)
void	JsonNodeInfo.setId(String id)
void	JsonAlgorithm.setIterationMode(JIPipeGraphWrapperAlgorithm.IterationMode iterationMode)
void	JIPipeNodeGroup.setIterationMode(JIPipeGraphWrapperAlgorithm.IterationMode iterationMode)
void	JsonNodeInfo.setMenuPathList(StringList value)
void	JsonNodeInfo.setName(String name)
void	JIPipeNodeGroup.setShowLimitedParameters(boolean showLimitedParameters)

Uses of JIPipeParameter in org.hkijena.jipipe.api.grouping.parameters

Methods in org.hkijena.jipipe.api.grouping.parameters with annotations of type JIPipeParameter

Modifier and Type	Method and Description
HTMLText	GraphNodeParameterReference.getCustomDescription()
String	GraphNodeParameterReference.getCustomName()
HTMLText	GraphNodeParameterReferenceGroup.getDescription()
String	GraphNodeParameterReferenceGroup.getName()
String	GraphNodeParameterReference.getPath()
void	GraphNodeParameterReference.setCustomDescription(HTMLText customDescription)
void	GraphNodeParameterReference.setCustomName(String customName)
void	GraphNodeParameterReferenceGroup.setDescription(HTMLText description)
void	GraphNodeParameterReferenceGroup.setName(String name)
void	GraphNodeParameterReference.setPath(String path)

Uses of JIPipeParameter in org.hkijena.jipipe.api.looping

Methods in org.hkijena.jipipe.api.looping with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeMergingAlgorithmIterationStepGenerationSettings	LoopStartNode.getBatchGenerationSettings() Deprecated.
JIPipeGraphWrapperAlgorithm.IterationMode	LoopStartNode.getIterationMode() Deprecated.
void	LoopStartNode.setIterationMode(JIPipeGraphWrapperAlgorithm.IterationMode iterationMode) Deprecated.

Uses of JIPipeParameter in org.hkijena.jipipe.api.nodes

Methods in org.hkijena.jipipe.api.nodes with annotations of type JIPipeParameter

Modifier and Type	Method and Description
HTMLText	JIPipeGraphNode.getCustomDescription() Returns the custom description that is set by the user
JIPipeCustomExpressionVariablesParameter	JIPipeAlgorithm.getDefaultCustomExpressionVariables()
String	JIPipeGraphNode.getName() Returns the algorithm name
StringQueryExpressionAndStringPairParameter.List	JIPipeAdaptiveParameterSettings.getOverriddenParameters()
String	JIPipeAdaptiveParameterSettings.getParameterAnnotationsPrefix()
RuntimePartitionReferenceParameter	JIPipeAlgorithm.getRuntimePartition()
boolean	JIPipeAdaptiveParameterSettings.isAttachOnlyNonDefaultParameterAnnotations()
boolean	JIPipeAdaptiveParameterSettings.isAttachParameterAnnotations()
boolean	JIPipeGraphNode.isBookmarked()
boolean	JIPipeAdaptiveParameterSettings.isEnabled()
boolean	JIPipeAlgorithm.isEnabled()
boolean	JIPipeAdaptiveParameterSettings.isParameterAnnotationsUseInternalNames()
boolean	JIPipeAlgorithm.isPassThrough()
boolean	JIPipeGraphNode.isUiLocked()
void	JIPipeAdaptiveParameterSettings.setAttachOnlyNonDefaultParameterAnnotations(boolean attachOnlyNonDefaultParameterAnnotations)
void	JIPipeAdaptiveParameterSettings.setAttachParameterAnnotations(boolean attachParameterAnnotations)
void	JIPipeGraphNode.setBookmarked(boolean bookmarked)
void	JIPipeGraphNode.setCustomDescription(HTMLText customDescription) Sets a custom description.
void	JIPipeGraphNode.setCustomName(String customName) Sets a custom name.
void	JIPipeAdaptiveParameterSettings.setEnabled(boolean enabled)
void	JIPipeAlgorithm.setEnabled(boolean enabled)
void	JIPipeAdaptiveParameterSettings.setOverriddenParameters(StringQueryExpressionAndStringPairParameter.List overriddenParameters)
void	JIPipeAdaptiveParameterSettings.setParameterAnnotationsPrefix(String parameterAnnotationsPrefix)
void	JIPipeAdaptiveParameterSettings.setParameterAnnotationsUseInternalNames(boolean parameterAnnotationsUseInternalNames)
void	JIPipeAlgorithm.setPassThrough(boolean passThrough)
void	JIPipeAlgorithm.setRuntimePartition(RuntimePartitionReferenceParameter runtimePartition)
void	JIPipeGraphNode.setUiLocked(boolean uiLocked)

Uses of JIPipeParameter in org.hkijena.jipipe.api.nodes.algorithm

Methods in org.hkijena.jipipe.api.nodes.algorithm with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeAdaptiveParameterSettings	JIPipeMergingAlgorithm.getAdaptiveParameterSettings()
JIPipeAdaptiveParameterSettings	JIPipeSingleIterationAlgorithm.getAdaptiveParameterSettings()
JIPipeAdaptiveParameterSettings	JIPipeSimpleIteratingAlgorithm.getAdaptiveParameterSettings()
JIPipeAdaptiveParameterSettings	JIPipeIteratingAlgorithm.getAdaptiveParameterSettings()
JIPipeTextAnnotationMatchingMethod	JIPipeIteratingAlgorithmIterationStepGenerationSettings.getAnnotationMatchingMethod()
JIPipeTextAnnotationMatchingMethod	JIPipeMergingAlgorithmIterationStepGenerationSettings.getAnnotationMatchingMethod()
JIPipeTextAnnotationMatchingMethod	JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.getAnnotationMatchingMethod()
JIPipeTextAnnotationMergeMode	JIPipeSingleIterationAlgorithmIterationStepGenerationSettings.getAnnotationMergeStrategy()
JIPipeTextAnnotationMergeMode	JIPipeMissingDataGeneratorIterationStepGenerationSettings.getAnnotationMergeStrategy()
JIPipeTextAnnotationMergeMode	JIPipeIteratingAlgorithmIterationStepGenerationSettings.getAnnotationMergeStrategy()
JIPipeTextAnnotationMergeMode	JIPipeMergingAlgorithmIterationStepGenerationSettings.getAnnotationMergeStrategy()
JIPipeTextAnnotationMergeMode	JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.getAnnotationMergeStrategy()
JIPipeColumMatching	JIPipeIteratingAlgorithmIterationStepGenerationSettings.getColumnMatching()
JIPipeColumMatching	JIPipeMergingAlgorithmIterationStepGenerationSettings.getColumnMatching()
JIPipeColumMatching	JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.getColumnMatching()
JIPipeExpressionParameter	JIPipeIteratingAlgorithmIterationStepGenerationSettings.getCustomAnnotationMatching()
JIPipeExpressionParameter	JIPipeMergingAlgorithmIterationStepGenerationSettings.getCustomAnnotationMatching()
JIPipeExpressionParameter	JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.getCustomAnnotationMatching()
StringQueryExpression	JIPipeMissingDataGeneratorIterationStepGenerationSettings.getCustomColumns()
StringQueryExpression	JIPipeIteratingAlgorithmIterationStepGenerationSettings.getCustomColumns()
StringQueryExpression	JIPipeMergingAlgorithmIterationStepGenerationSettings.getCustomColumns()
StringQueryExpression	JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.getCustomColumns()
JIPipeDataAnnotationMergeMode	JIPipeSingleIterationAlgorithmIterationStepGenerationSettings.getDataAnnotationMergeStrategy()
JIPipeDataAnnotationMergeMode	JIPipeMissingDataGeneratorIterationStepGenerationSettings.getDataAnnotationMergeStrategy()
JIPipeDataAnnotationMergeMode	JIPipeIteratingAlgorithmIterationStepGenerationSettings.getDataAnnotationMergeStrategy()
JIPipeDataAnnotationMergeMode	JIPipeMergingAlgorithmIterationStepGenerationSettings.getDataAnnotationMergeStrategy()
JIPipeDataAnnotationMergeMode	JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.getDataAnnotationMergeStrategy()
JIPipeMergingAlgorithmIterationStepGenerationSettings	JIPipeMergingAlgorithm.getDataBatchGenerationSettings()
JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings	JIPipeIteratingMissingDataGeneratorAlgorithm.getDataBatchGenerationSettings()
JIPipeSingleIterationAlgorithmIterationStepGenerationSettings	JIPipeSingleIterationAlgorithm.getDataBatchGenerationSettings()
JIPipeMissingDataGeneratorIterationStepGenerationSettings	JIPipeMissingDataGeneratorAlgorithm.getDataBatchGenerationSettings()
JIPipeSimpleIteratingAlgorithmIterationStepGenerationSettings	JIPipeSimpleIteratingAlgorithm.getDataBatchGenerationSettings()
JIPipeParameterlessSimpleIteratingAlgorithm.IterationStepGenerationSettings	JIPipeParameterlessSimpleIteratingAlgorithm.getDataBatchGenerationSettings()
JIPipeIteratingAlgorithmIterationStepGenerationSettings	JIPipeIteratingAlgorithm.getDataBatchGenerationSettings()
JIPipeColumMatching	JIPipeMissingDataGeneratorIterationStepGenerationSettings.getDataSetMatching()
OptionalIntegerRange	JIPipeMissingDataGeneratorIterationStepGenerationSettings.getLimit()
OptionalIntegerRange	JIPipeParameterlessSimpleIteratingAlgorithm.IterationStepGenerationSettings.getLimit()
OptionalIntegerRange	JIPipeIteratingAlgorithmIterationStepGenerationSettings.getLimit()
OptionalIntegerRange	JIPipeSimpleIteratingAlgorithmIterationStepGenerationSettings.getLimit()
OptionalIntegerRange	JIPipeMergingAlgorithmIterationStepGenerationSettings.getLimit()
OptionalIntegerRange	JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.getLimit()
OptionalIntegerParameter	JIPipeSimpleIteratingAlgorithm.getLocalParallelizationNumThreads()
OptionalIntegerParameter	JIPipeIteratingAlgorithm.getLocalParallelizationNumThreads()
String	JIPipeParameterSlotAlgorithmSettings.getParameterAnnotationsPrefix()
JIPipeParameterSlotAlgorithmSettings	JIPipeParameterSlotAlgorithm.getParameterSlotAlgorithmSettings()
boolean	JIPipeMissingDataGeneratorIterationStepGenerationSettings.isAllowMerging()
boolean	JIPipeParameterSlotAlgorithmSettings.isAttachOnlyNonDefaultParameterAnnotations()
boolean	JIPipeParameterSlotAlgorithmSettings.isAttachParameterAnnotations()
boolean	JIPipeMissingDataGeneratorIterationStepGenerationSettings.isForceFlowGraphSolver()
boolean	JIPipeIteratingAlgorithmIterationStepGenerationSettings.isForceFlowGraphSolver()
boolean	JIPipeMergingAlgorithmIterationStepGenerationSettings.isForceFlowGraphSolver()
boolean	JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.isForceFlowGraphSolver()
boolean	JIPipeMergingAlgorithmIterationStepGenerationSettings.isForceNAIsAny()
boolean	JIPipeParameterSlotAlgorithmSettings.isHasParameterSlot()
boolean	JIPipeIteratingMissingDataGeneratorAlgorithm.isKeepOriginalAnnotations()
boolean	JIPipeMissingDataGeneratorAlgorithm.isKeepOriginalAnnotations()
boolean	JIPipeParameterSlotAlgorithmSettings.isParameterAnnotationsUseInternalNames()
boolean	JIPipeIteratingAlgorithmIterationStepGenerationSettings.isSkipIncompleteDataSets()
boolean	JIPipeMergingAlgorithmIterationStepGenerationSettings.isSkipIncompleteDataSets()
void	JIPipeMissingDataGeneratorIterationStepGenerationSettings.setAllowMerging(boolean allowMerging)
void	JIPipeIteratingAlgorithmIterationStepGenerationSettings.setAnnotationMatchingMethod(JIPipeTextAnnotationMatchingMethod annotationMatchingMethod)
void	JIPipeMergingAlgorithmIterationStepGenerationSettings.setAnnotationMatchingMethod(JIPipeTextAnnotationMatchingMethod annotationMatchingMethod)
void	JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.setAnnotationMatchingMethod(JIPipeTextAnnotationMatchingMethod annotationMatchingMethod)
void	JIPipeSingleIterationAlgorithmIterationStepGenerationSettings.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	JIPipeMissingDataGeneratorIterationStepGenerationSettings.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	JIPipeIteratingAlgorithmIterationStepGenerationSettings.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	JIPipeMergingAlgorithmIterationStepGenerationSettings.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	JIPipeParameterSlotAlgorithmSettings.setAttachOnlyNonDefaultParameterAnnotations(boolean attachOnlyNonDefaultParameterAnnotations)
void	JIPipeParameterSlotAlgorithmSettings.setAttachParameterAnnotations(boolean attachParameterAnnotations)
void	JIPipeIteratingAlgorithmIterationStepGenerationSettings.setColumnMatching(JIPipeColumMatching columnMatching)
void	JIPipeMergingAlgorithmIterationStepGenerationSettings.setColumnMatching(JIPipeColumMatching columnMatching)
void	JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.setColumnMatching(JIPipeColumMatching columnMatching)
void	JIPipeIteratingAlgorithmIterationStepGenerationSettings.setCustomAnnotationMatching(JIPipeExpressionParameter customAnnotationMatching)
void	JIPipeMergingAlgorithmIterationStepGenerationSettings.setCustomAnnotationMatching(JIPipeExpressionParameter customAnnotationMatching)
void	JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.setCustomAnnotationMatching(JIPipeExpressionParameter customAnnotationMatching)
void	JIPipeMissingDataGeneratorIterationStepGenerationSettings.setCustomColumns(StringQueryExpression customColumns)
void	JIPipeIteratingAlgorithmIterationStepGenerationSettings.setCustomColumns(StringQueryExpression customColumns)
void	JIPipeMergingAlgorithmIterationStepGenerationSettings.setCustomColumns(StringQueryExpression customColumns)
void	JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.setCustomColumns(StringQueryExpression customColumns)
void	JIPipeSingleIterationAlgorithmIterationStepGenerationSettings.setDataAnnotationMergeStrategy(JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy)
void	JIPipeMissingDataGeneratorIterationStepGenerationSettings.setDataAnnotationMergeStrategy(JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy)
void	JIPipeIteratingAlgorithmIterationStepGenerationSettings.setDataAnnotationMergeStrategy(JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy)
void	JIPipeMergingAlgorithmIterationStepGenerationSettings.setDataAnnotationMergeStrategy(JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy)
void	JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.setDataAnnotationMergeStrategy(JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy)
void	JIPipeMissingDataGeneratorIterationStepGenerationSettings.setDataSetMatching(JIPipeColumMatching dataSetMatching)
void	JIPipeMissingDataGeneratorIterationStepGenerationSettings.setForceFlowGraphSolver(boolean forceFlowGraphSolver)
void	JIPipeIteratingAlgorithmIterationStepGenerationSettings.setForceFlowGraphSolver(boolean forceFlowGraphSolver)
void	JIPipeMergingAlgorithmIterationStepGenerationSettings.setForceFlowGraphSolver(boolean forceFlowGraphSolver)
void	JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.setForceFlowGraphSolver(boolean forceFlowGraphSolver)
void	JIPipeMergingAlgorithmIterationStepGenerationSettings.setForceNAIsAny(boolean forceNAIsAny)
void	JIPipeParameterSlotAlgorithmSettings.setHasParameterSlot(boolean hasParameterSlot)
void	JIPipeIteratingMissingDataGeneratorAlgorithm.setKeepOriginalAnnotations(boolean keepOriginalAnnotations)
void	JIPipeMissingDataGeneratorAlgorithm.setKeepOriginalAnnotations(boolean keepOriginalAnnotations)
void	JIPipeMissingDataGeneratorIterationStepGenerationSettings.setLimit(OptionalIntegerRange limit)
void	JIPipeParameterlessSimpleIteratingAlgorithm.IterationStepGenerationSettings.setLimit(OptionalIntegerRange limit)
void	JIPipeIteratingAlgorithmIterationStepGenerationSettings.setLimit(OptionalIntegerRange limit)
void	JIPipeSimpleIteratingAlgorithmIterationStepGenerationSettings.setLimit(OptionalIntegerRange limit)
void	JIPipeMergingAlgorithmIterationStepGenerationSettings.setLimit(OptionalIntegerRange limit)
void	JIPipeIteratingMissingDataGeneratorIterationStepGenerationSettings.setLimit(OptionalIntegerRange limit)
void	JIPipeSimpleIteratingAlgorithm.setLocalParallelizationNumThreads(OptionalIntegerParameter localParallelizationNumThreads)
void	JIPipeIteratingAlgorithm.setLocalParallelizationNumThreads(OptionalIntegerParameter localParallelizationNumThreads)
void	JIPipeParameterSlotAlgorithmSettings.setParameterAnnotationsPrefix(String parameterAnnotationsPrefix)
void	JIPipeParameterSlotAlgorithmSettings.setParameterAnnotationsUseInternalNames(boolean parameterAnnotationsUseInternalNames)
void	JIPipeIteratingAlgorithmIterationStepGenerationSettings.setSkipIncompleteDataSets(boolean skipIncompleteDataSets)
void	JIPipeMergingAlgorithmIterationStepGenerationSettings.setSkipIncompleteDataSets(boolean skipIncompleteDataSets)

Uses of JIPipeParameter in org.hkijena.jipipe.api.nodes.annotation

Methods in org.hkijena.jipipe.api.nodes.annotation with annotations of type JIPipeParameter

Modifier and Type	Method and Description
int	JIPipeAnnotationGraphNode.getGridHeight()
int	JIPipeAnnotationGraphNode.getGridWidth()
int	JIPipeAnnotationGraphNode.getzOrder()
void	JIPipeAnnotationGraphNode.setGridHeight(int gridHeight)
void	JIPipeAnnotationGraphNode.setGridWidth(int gridWidth)
void	JIPipeAnnotationGraphNode.setzOrder(int zOrder)

Uses of JIPipeParameter in org.hkijena.jipipe.api.project

Methods in org.hkijena.jipipe.api.project with annotations of type JIPipeParameter

Modifier and Type	Method and Description
String	JIPipeProjectDirectories.DirectoryEntry.getDescription()
JIPipeProjectDirectories	JIPipeProjectMetadata.getDirectories()
ParameterCollectionList	JIPipeProjectDirectories.getDirectories()
GraphNodeParameterReferenceGroupCollection	JIPipeProjectInfoParameters.getExportedParameters()
JIPipeDynamicParameterCollection	JIPipeProjectMetadata.getGlobalParameters()
String	JIPipeProjectDirectories.DirectoryEntry.getKey()
String	JIPipeProjectDirectories.DirectoryEntry.getName()
JIPipeNodeTemplate.List	JIPipeProjectMetadata.getNodeTemplates()
Path	JIPipeProjectDirectories.DirectoryEntry.getPath()
JIPipeProjectPermissions	JIPipeProjectMetadata.getPermissions()
String	JIPipeProjectMetadata.getTemplateDescription()
JIPipeImageJUpdateSiteDependency.List	JIPipeProjectMetadata.getUpdateSiteDependencies()
boolean	JIPipeProjectMetadata.isAutoAddAuthors()
boolean	JIPipeProjectDirectories.DirectoryEntry.isMustExist()
boolean	JIPipeProjectPermissions.isPreventAddingDeletingNodes()
boolean	JIPipeProjectPermissions.isPreventModifyingSlots()
boolean	JIPipeProjectMetadata.isRestoreTabs()
boolean	JIPipeProjectMetadata.isShowCompartmentsRunPanelInOverview()
void	JIPipeProjectMetadata.setAutoAddAuthors(boolean autoAddAuthors)
void	JIPipeProjectDirectories.DirectoryEntry.setDescription(String description)
void	JIPipeProjectDirectories.setDirectories(ParameterCollectionList directories)
void	JIPipeProjectInfoParameters.setExportedParameters(GraphNodeParameterReferenceGroupCollection parameters)
void	JIPipeProjectDirectories.DirectoryEntry.setKey(String key)
void	JIPipeProjectDirectories.DirectoryEntry.setMustExist(boolean mustExist)
void	JIPipeProjectDirectories.DirectoryEntry.setName(String name)
void	JIPipeProjectMetadata.setNodeTemplates(JIPipeNodeTemplate.List nodeTemplates)
void	JIPipeProjectDirectories.DirectoryEntry.setPath(Path path)
void	JIPipeProjectPermissions.setPreventAddingDeletingNodes(boolean preventAddingDeletingNodes)
void	JIPipeProjectPermissions.setPreventModifyingSlots(boolean preventModifyingSlots)
void	JIPipeProjectMetadata.setRestoreTabs(boolean restoreTabs)
void	JIPipeProjectMetadata.setShowCompartmentsRunPanelInOverview(boolean showCompartmentsRunPanelInOverview)
void	JIPipeProjectMetadata.setTemplateDescription(String templateDescription)
void	JIPipeProjectMetadata.setUpdateSiteDependencies(JIPipeImageJUpdateSiteDependency.List updateSiteDependencies)

Uses of JIPipeParameter in org.hkijena.jipipe.api.run

Methods in org.hkijena.jipipe.api.run with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalColorParameter	JIPipeProjectRunSet.getColor()
HTMLText	JIPipeProjectRunSet.getDescription()
String	JIPipeProjectRunSet.getName()
GraphNodeReferenceParameter.List	JIPipeProjectRunSet.getNodes()
int	JIPipeGraphRunConfiguration.getNumThreads()
Path	JIPipeGraphRunConfiguration.getOutputPath()
boolean	JIPipeGraphRunConfiguration.isCleanupOutputsAfterFailure()
boolean	JIPipeGraphRunConfiguration.isCleanupOutputsAfterSuccess()
boolean	JIPipeGraphRunConfiguration.isLoadFromCache()
boolean	JIPipeGraphRunConfiguration.isStoreToCache()
boolean	JIPipeGraphRunConfiguration.isStoreToDisk()
void	JIPipeGraphRunConfiguration.setCleanupOutputsAfterFailure(boolean cleanupOutputsAfterFailure)
void	JIPipeGraphRunConfiguration.setCleanupOutputsAfterSuccess(boolean cleanupOutputsAfterSuccess)
void	JIPipeProjectRunSet.setColor(OptionalColorParameter color)
void	JIPipeProjectRunSet.setDescription(HTMLText description)
void	JIPipeGraphRunConfiguration.setLoadFromCache(boolean loadFromCache)
void	JIPipeProjectRunSet.setName(String name)
void	JIPipeProjectRunSet.setNodes(GraphNodeReferenceParameter.List nodes)
void	JIPipeGraphRunConfiguration.setNumThreads(int numThreads)
void	JIPipeGraphRunConfiguration.setOutputPath(Path outputPath) Sets the output path
void	JIPipeGraphRunConfiguration.setStoreToCache(boolean storeToCache)
void	JIPipeGraphRunConfiguration.setStoreToDisk(boolean storeToDisk)

Uses of JIPipeParameter in org.hkijena.jipipe.api.runtimepartitioning

Methods in org.hkijena.jipipe.api.runtimepartitioning with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalColorParameter	JIPipeRuntimePartition.getColor()
JIPipeRuntimePartition.ContinueOnFailureSettings	JIPipeRuntimePartition.getContinueOnFailureSettings()
HTMLText	JIPipeRuntimePartition.getDescription()
JIPipeGraphWrapperAlgorithm.IterationMode	JIPipeRuntimePartition.getIterationMode()
JIPipeIteratingAlgorithmIterationStepGenerationSettings	JIPipeRuntimePartition.getLoopIterationIteratingSettings()
JIPipeMergingAlgorithmIterationStepGenerationSettings	JIPipeRuntimePartition.getLoopIterationMergingSettings()
String	JIPipeRuntimePartition.getName()
JIPipeRuntimePartition.OutputSettings	JIPipeRuntimePartition.getOutputSettings()
boolean	JIPipeRuntimePartition.OutputSettings.isAlwaysExportCompartmentOutputs()
boolean	JIPipeRuntimePartition.ContinueOnFailureSettings.isContinueOnFailure()
boolean	JIPipeRuntimePartition.ContinueOnFailureSettings.isDisableOnUpdateCache()
boolean	JIPipeRuntimePartition.isEnableParallelization()
boolean	JIPipeRuntimePartition.ContinueOnFailureSettings.isExportFailedLoopInputs()
boolean	JIPipeRuntimePartition.ContinueOnFailureSettings.isExportFailedPartitionInputs()
boolean	JIPipeRuntimePartition.OutputSettings.isExportHeavyData()
boolean	JIPipeRuntimePartition.OutputSettings.isExportLightweightData()
boolean	JIPipeRuntimePartition.OutputSettings.isExportLoopIntermediateResults()
boolean	JIPipeRuntimePartition.OutputSettings.isExportLoopTerminating()
boolean	JIPipeRuntimePartition.isForcePassThroughLoopIterationInCaching()
void	JIPipeRuntimePartition.OutputSettings.setAlwaysExportCompartmentOutputs(boolean alwaysExportCompartmentOutputs)
void	JIPipeRuntimePartition.setColor(OptionalColorParameter color)
void	JIPipeRuntimePartition.ContinueOnFailureSettings.setContinueOnFailure(boolean continueOnFailure)
void	JIPipeRuntimePartition.setDescription(HTMLText description)
void	JIPipeRuntimePartition.ContinueOnFailureSettings.setDisableOnUpdateCache(boolean disableOnUpdateCache)
void	JIPipeRuntimePartition.setEnableParallelization(boolean enableParallelization)
void	JIPipeRuntimePartition.ContinueOnFailureSettings.setExportFailedLoopInputs(boolean exportFailedLoopInputs)
void	JIPipeRuntimePartition.ContinueOnFailureSettings.setExportFailedPartitionInputs(boolean exportFailedPartitionInputs)
void	JIPipeRuntimePartition.OutputSettings.setExportHeavyData(boolean exportHeavyData)
void	JIPipeRuntimePartition.OutputSettings.setExportLightweightData(boolean exportLightweightData)
void	JIPipeRuntimePartition.OutputSettings.setExportLoopIntermediateResults(boolean exportLoopIntermediateResults)
void	JIPipeRuntimePartition.OutputSettings.setExportLoopTerminating(boolean exportLoopTerminating)
void	JIPipeRuntimePartition.setForcePassThroughLoopIterationInCaching(boolean forcePassThroughLoopIterationInCaching)
void	JIPipeRuntimePartition.setIterationMode(JIPipeGraphWrapperAlgorithm.IterationMode iterationMode)
void	JIPipeRuntimePartition.setName(String name)

Uses of JIPipeParameter in org.hkijena.jipipe.desktop.app

Methods in org.hkijena.jipipe.desktop.app with annotations of type JIPipeParameter

Modifier and Type	Method and Description
boolean	JIPipeDesktopProjectReportUI.ReportSettings.isAddAcknowledgements()
boolean	JIPipeDesktopProjectReportUI.ReportSettings.isAddAuthors()
boolean	JIPipeDesktopProjectReportUI.ReportSettings.isAddCitation()
boolean	JIPipeDesktopProjectReportUI.ReportSettings.isAddDependencies()
boolean	JIPipeDesktopProjectReportUI.ReportSettings.isAddDependencyCitations()
boolean	JIPipeDesktopProjectReportUI.ReportSettings.isAddDescription()
boolean	JIPipeDesktopProjectReportUI.ReportSettings.isAddGlobalParameters()
boolean	JIPipeDesktopProjectReportUI.ReportSettings.isAddLicence()
boolean	JIPipeDesktopProjectReportUI.ReportSettings.isAddListOfUsedNodes()
boolean	JIPipeDesktopProjectReportUI.ReportSettings.isAddPipelineTextDescription()
boolean	JIPipeDesktopProjectReportUI.ReportSettings.isAddSummary()
boolean	JIPipeDesktopProjectReportUI.ReportSettings.isAddTitle()
boolean	JIPipeDesktopProjectReportUI.ReportSettings.isAddUserDirectories()
boolean	JIPipeDesktopProjectReportUI.ReportSettings.isAddWebsite()
void	JIPipeDesktopProjectReportUI.ReportSettings.setAddAcknowledgements(boolean addAcknowledgements)
void	JIPipeDesktopProjectReportUI.ReportSettings.setAddAuthors(boolean addAuthors)
void	JIPipeDesktopProjectReportUI.ReportSettings.setAddCitation(boolean addCitation)
void	JIPipeDesktopProjectReportUI.ReportSettings.setAddDependencies(boolean addDependencies)
void	JIPipeDesktopProjectReportUI.ReportSettings.setAddDependencyCitations(boolean addDependencyCitations)
void	JIPipeDesktopProjectReportUI.ReportSettings.setAddDescription(boolean addDescription)
void	JIPipeDesktopProjectReportUI.ReportSettings.setAddGlobalParameters(boolean addGlobalParameters)
void	JIPipeDesktopProjectReportUI.ReportSettings.setAddLicence(boolean addLicence)
void	JIPipeDesktopProjectReportUI.ReportSettings.setAddListOfUsedNodes(boolean addListOfUsedNodes)
void	JIPipeDesktopProjectReportUI.ReportSettings.setAddPipelineTextDescription(boolean addPipelineTextDescription)
void	JIPipeDesktopProjectReportUI.ReportSettings.setAddSummary(boolean addSummary)
void	JIPipeDesktopProjectReportUI.ReportSettings.setAddTitle(boolean addTitle)
void	JIPipeDesktopProjectReportUI.ReportSettings.setAddUserDirectories(boolean addUserDirectories)
void	JIPipeDesktopProjectReportUI.ReportSettings.setAddWebsite(boolean addWebsite)

Uses of JIPipeParameter in org.hkijena.jipipe.desktop.app.cache.exporters

Methods in org.hkijena.jipipe.desktop.app.cache.exporters with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeDataByMetadataExporter	JIPipeDesktopDataTableToFilesByMetadataExporterRun.Settings.getExporter()
boolean	JIPipeDesktopDataTableToFilesByMetadataExporterRun.Settings.isRememberSettings()
boolean	JIPipeDesktopDataTableToFilesByMetadataExporterRun.Settings.isSplitBySlotName()
void	JIPipeDesktopDataTableToFilesByMetadataExporterRun.Settings.setRememberSettings(boolean rememberSettings)
void	JIPipeDesktopDataTableToFilesByMetadataExporterRun.Settings.setSplitBySlotName(boolean splitBySlotName)

Uses of JIPipeParameter in org.hkijena.jipipe.desktop.app.ploteditor

Methods in org.hkijena.jipipe.desktop.app.ploteditor with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeDynamicParameterCollection	JIPipeDesktopPlotSeriesEditor.getColumnAssignments()
JFreeChartPlotData	JFreeChartPlotEditor.getCurrentPlot()
String	JIPipeDesktopPlotSeriesEditor.getName()
JIPipeDataInfoRef	JFreeChartPlotEditor.getPlotType()
boolean	JIPipeDesktopPlotSeriesEditor.isEnabled()
void	JIPipeDesktopPlotSeriesEditor.setEnabled(boolean enabled)
void	JIPipeDesktopPlotSeriesEditor.setName(String name)
void	JFreeChartPlotEditor.setPlotType(JIPipeDataInfoRef plotType)

Uses of JIPipeParameter in org.hkijena.jipipe.desktop.app.quickrun

Methods in org.hkijena.jipipe.desktop.app.quickrun with annotations of type JIPipeParameter

Modifier and Type	Method and Description
int	JIPipeDesktopQuickRunSettings.getNumThreads()
Path	JIPipeDesktopQuickRunSettings.getOutputPath()
boolean	JIPipeDesktopQuickRunSettings.isExcludeSelected()
boolean	JIPipeDesktopQuickRunSettings.isLoadFromCache()
boolean	JIPipeDesktopQuickRunSettings.isSaveToDisk()
boolean	JIPipeDesktopQuickRunSettings.isStoreIntermediateResults()
boolean	JIPipeDesktopQuickRunSettings.isStoreToCache()
void	JIPipeDesktopQuickRunSettings.setExcludeSelected(boolean excludeSelected)
void	JIPipeDesktopQuickRunSettings.setLoadFromCache(boolean loadFromCache)
void	JIPipeDesktopQuickRunSettings.setNumThreads(int numThreads)
void	JIPipeDesktopQuickRunSettings.setOutputPath(Path outputPath)
void	JIPipeDesktopQuickRunSettings.setSaveToDisk(boolean saveToDisk)
void	JIPipeDesktopQuickRunSettings.setStoreIntermediateResults(boolean storeIntermediateResults)
void	JIPipeDesktopQuickRunSettings.setStoreToCache(boolean storeToCache)

Uses of JIPipeParameter in org.hkijena.jipipe.desktop.app.settings

Methods in org.hkijena.jipipe.desktop.app.settings with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeParameterCollection	JIPipeDesktopProjectSettingsUI.SettingsSheetWrapper.getWrapped()

Uses of JIPipeParameter in org.hkijena.jipipe.desktop.app.settings.project

Methods in org.hkijena.jipipe.desktop.app.settings.project with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeDynamicParameterCollection	JIPipeDesktopMergedProjectSettings.getGlobalParameters()
JIPipeDesktopMergedProjectSettingsUserDirectories	JIPipeDesktopMergedProjectSettings.getUserDirectoriesSettings()

Uses of JIPipeParameter in org.hkijena.jipipe.desktop.commons.components

Methods in org.hkijena.jipipe.desktop.commons.components with annotations of type JIPipeParameter

Modifier and Type	Method and Description
HTMLText	JIPipeDesktopAddParameterDialog.Settings.getDescription()
String	JIPipeDesktopAddParameterDialog.Settings.getId()
String	JIPipeDesktopAddParameterDialog.Settings.getName()
void	JIPipeDesktopAddParameterDialog.Settings.setDescription(HTMLText description)
void	JIPipeDesktopAddParameterDialog.Settings.setId(String id)
void	JIPipeDesktopAddParameterDialog.Settings.setName(String name)

Uses of JIPipeParameter in org.hkijena.jipipe.desktop.commons.components.parameters

Methods in org.hkijena.jipipe.desktop.commons.components.parameters with annotations of type JIPipeParameter

Modifier and Type	Method and Description
HTMLText	JIPipeDesktopDynamicParameterEditorDialog.ParameterEntry.getDescription()
String	JIPipeDesktopDynamicParameterEditorDialog.ParameterEntry.getKey()
String	JIPipeDesktopDynamicParameterEditorDialog.ParameterEntry.getName()
JIPipeParameterTypeInfoRef	JIPipeDesktopDynamicParameterEditorDialog.ParameterEntry.getType()
void	JIPipeDesktopDynamicParameterEditorDialog.ParameterEntry.setDescription(HTMLText description)
void	JIPipeDesktopDynamicParameterEditorDialog.ParameterEntry.setKey(String key)
void	JIPipeDesktopDynamicParameterEditorDialog.ParameterEntry.setName(String name)
void	JIPipeDesktopDynamicParameterEditorDialog.ParameterEntry.setType(JIPipeParameterTypeInfoRef type)

Uses of JIPipeParameter in org.hkijena.jipipe.desktop.commons.components.tabs

Methods in org.hkijena.jipipe.desktop.commons.components.tabs with annotations of type JIPipeParameter

Modifier and Type	Method and Description
String	JIPipeDesktopTabPane.DocumentTab.getTitle()
void	JIPipeDesktopTabPane.DocumentTab.setTitle(String title)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.annotation.algorithms

Methods in org.hkijena.jipipe.plugins.annotation.algorithms with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalTextAnnotationNameParameter	ConvertToAnnotationTable.getAddDataToString()
OptionalStringParameter	ExtractDataAnnotation.getAnnotateWithCurrentData()
AnnotationQueryExpression	RemoveAnnotationAlgorithm.getAnnotationExpression()
AnnotationQueryExpression	SimplifyAnnotationsAlgorithm.getAnnotationFilter()
JIPipeTextAnnotationMergeMode	ExtractAndReplaceAnnotation.getAnnotationMergeStrategy()
JIPipeTextAnnotationMergeMode	GenerateUniqueAnnotation.getAnnotationMergeStrategy()
JIPipeTextAnnotationMergeMode	AnnotateWithData.getAnnotationMergeStrategy()
JIPipeDataAnnotationMergeMode	RenameDataAnnotation.getAnnotationMergeStrategy()
JIPipeTextAnnotationMergeMode	AnnotateWithDataString.getAnnotationMergeStrategy()
JIPipeTextAnnotationMergeMode	DataAnnotationToStringAnnotation.getAnnotationMergeStrategy()
JIPipeTextAnnotationMergeMode	AnnotateByExpression.getAnnotationMergeStrategy()
JIPipeTextAnnotationMergeMode	GenerateRandomUniqueAnnotation.getAnnotationMergeStrategy()
JIPipeTextAnnotationMergeMode	AnnotateWithSourceSlot.getAnnotationMergeStrategy()
JIPipeTextAnnotationMergeMode	RenameAnnotation.getAnnotationMergeStrategy()
String	AnnotateWithData.getAnnotationName()
JIPipeExpressionParameter	AnnotateByProjectPaths.Entry.getAnnotationName()
StringQueryExpression	SetSingleAnnotation.getAnnotationName()
StringQueryExpression	RemoveNAAnnotationColumnsAlgorithm.getAnnotationNameFilter()
StringQueryExpression	RemoveArrayAnnotationsAlgorithm.getAnnotationNameFilter()
StringQueryExpression	ExtractDataAnnotation.getAnnotationNameQuery()
SimplifyAnnotationsAlgorithm.AnnotationRemovalMode	SimplifyAnnotationsAlgorithm.getAnnotationRemovalMode()
NamedTextAnnotationGeneratorExpression.List	AnnotateByExpression.getAnnotations()
DataExportExpressionParameter	AnnotateByProjectPaths.Entry.getAnnotationValue()
StringQueryExpression	SetSingleAnnotation.getAnnotationValue()
String	GenerateUniqueAnnotation.getBaseName()
PythonScript	ModifyAnnotationScript.getCode()
PythonScript	SplitByAnnotationScript.getCode()
JIPipeExpressionParameter	SimplifyAnnotationsAlgorithm.getCombinationFunction()
JIPipeDataAnnotationMergeMode	AnnotateWithData.getDataAnnotationMergeMode()
AnnotationFilterExpression	FilterByAnnotationIfElse.getFilter()
AnnotationFilterExpression	FilterByAnnotation.getFilter()
StringPatternExtractionFunction.List	ExtractAndReplaceAnnotation.getFunctions()
String	GenerateUniqueAnnotation.getGeneratedAnnotation()
String	AnnotateWithDataString.getGeneratedAnnotation()
String	GenerateRandomUniqueAnnotation.getGeneratedAnnotation()
String	AnnotateWithSourceSlot.getGeneratedAnnotation()
String	SimplifyAnnotationsAlgorithm.getGeneratedAnnotationName()
ParameterCollectionList	AnnotateByProjectPaths.getGeneratedAnnotations()
JIPipeTextAnnotationMergeMode	OverwriteAnnotations.getMergeMode()
JIPipeTextAnnotationMergeMode	AnnotateByProjectPaths.getMergeMode()
StringQueryExpression	DataAnnotationToStringAnnotation.getNameFilter()
StringQueryExpression	RemoveDataAnnotations.getNameFilter()
JIPipeExpressionParameter	OverwriteAnnotations.getRemoveExistingAnnotationsFilter()
StringQueryExpression	SimplifyAnnotationsAlgorithm.getRenameFunction()
StringQueryExpressionAndStringPairParameter.List	RenameDataAnnotation.getRenamingItems()
StringQueryExpressionAndStringPairParameter.List	RenameAnnotation.getRenamingItems()
JIPipeDynamicParameterCollection	ModifyAnnotationScript.getScriptParameters()
JIPipeDynamicParameterCollection	SplitByAnnotationScript.getScriptParameters()
JIPipeExpressionParameter	OverwriteAnnotations.getSourceAnnotationFilter()
JIPipeIteratingAlgorithmIterationStepGenerationSettings	AnnotateWithAnnotationTable.getTableMergeSettings()
OutputSlotMapParameterCollection	SplitByAnnotation.getTargetSlots()
boolean	AnnotateWithDataString.isDetailedDataString()
boolean	AnnotateWithAnnotationTable.isDiscardExistingAnnotations()
boolean	FilterByAnnotation.isEnableFilter()
boolean	ExtractDataAnnotation.isIgnoreMissingAnnotations()
boolean	ExtractDataAnnotation.isKeepCurrentAnnotation()
boolean	DataAnnotationToStringAnnotation.isKeepDataAnnotations()
boolean	ExtractDataAnnotation.isKeepOtherDataAnnotations()
boolean	AnnotateWithData.isMergeInputAnnotations()
boolean	AnnotateWithData.isMergeLabelAnnotations()
boolean	RemoveArrayAnnotationsAlgorithm.isRemoveColumn()
boolean	ConvertToAnnotationTable.isRemoveOutputAnnotations()
void	ConvertToAnnotationTable.setAddDataToString(OptionalTextAnnotationNameParameter addDataToString)
void	ExtractDataAnnotation.setAnnotateWithCurrentData(OptionalStringParameter annotateWithCurrentData)
void	RemoveAnnotationAlgorithm.setAnnotationExpression(AnnotationQueryExpression annotationExpression)
void	SimplifyAnnotationsAlgorithm.setAnnotationFilter(AnnotationQueryExpression annotationFilter)
void	RenameDataAnnotation.setAnnotationMergeStrategy(JIPipeDataAnnotationMergeMode annotationMergeStrategy)
void	ExtractAndReplaceAnnotation.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	GenerateUniqueAnnotation.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	AnnotateWithData.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	AnnotateWithDataString.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	DataAnnotationToStringAnnotation.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	AnnotateByExpression.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	GenerateRandomUniqueAnnotation.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	AnnotateWithSourceSlot.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	RenameAnnotation.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	AnnotateByProjectPaths.Entry.setAnnotationName(JIPipeExpressionParameter annotationName)
void	AnnotateWithData.setAnnotationName(String annotationName)
void	SetSingleAnnotation.setAnnotationName(StringQueryExpression annotationName)
void	RemoveNAAnnotationColumnsAlgorithm.setAnnotationNameFilter(StringQueryExpression annotationNameFilter)
void	RemoveArrayAnnotationsAlgorithm.setAnnotationNameFilter(StringQueryExpression annotationNameFilter)
void	ExtractDataAnnotation.setAnnotationNameQuery(StringQueryExpression annotationNameQuery)
void	SimplifyAnnotationsAlgorithm.setAnnotationRemovalMode(SimplifyAnnotationsAlgorithm.AnnotationRemovalMode annotationRemovalMode)
void	AnnotateByExpression.setAnnotations(NamedTextAnnotationGeneratorExpression.List annotations)
void	AnnotateByProjectPaths.Entry.setAnnotationValue(DataExportExpressionParameter annotationValue)
void	SetSingleAnnotation.setAnnotationValue(StringQueryExpression annotationValue)
void	GenerateUniqueAnnotation.setBaseName(String baseName)
void	ModifyAnnotationScript.setCode(PythonScript code)
void	SplitByAnnotationScript.setCode(PythonScript code)
void	SimplifyAnnotationsAlgorithm.setCombinationFunction(JIPipeExpressionParameter combinationFunction)
void	AnnotateWithData.setDataAnnotationMergeMode(JIPipeDataAnnotationMergeMode dataAnnotationMergeMode)
void	AnnotateWithDataString.setDetailedDataString(boolean detailedDataString)
void	AnnotateWithAnnotationTable.setDiscardExistingAnnotations(boolean discardExistingAnnotations)
void	FilterByAnnotation.setEnableFilter(boolean enableFilter)
void	FilterByAnnotationIfElse.setFilter(AnnotationFilterExpression filter)
void	FilterByAnnotation.setFilter(AnnotationFilterExpression filter)
void	ExtractAndReplaceAnnotation.setFunctions(StringPatternExtractionFunction.List functions)
void	GenerateUniqueAnnotation.setGeneratedAnnotation(String generatedAnnotation) Sets generated annotation type
void	AnnotateWithDataString.setGeneratedAnnotation(String generatedAnnotation) Sets generated annotation type
void	GenerateRandomUniqueAnnotation.setGeneratedAnnotation(String generatedAnnotation) Sets generated annotation type
void	AnnotateWithSourceSlot.setGeneratedAnnotation(String generatedAnnotation) Sets generated annotation type
void	SimplifyAnnotationsAlgorithm.setGeneratedAnnotationName(String generatedAnnotationName)
void	AnnotateByProjectPaths.setGeneratedAnnotations(ParameterCollectionList generatedAnnotations)
void	ExtractDataAnnotation.setIgnoreMissingAnnotations(boolean ignoreMissingAnnotations)
void	ExtractDataAnnotation.setKeepCurrentAnnotation(boolean keepCurrentAnnotation)
void	DataAnnotationToStringAnnotation.setKeepDataAnnotations(boolean keepDataAnnotations)
void	ExtractDataAnnotation.setKeepOtherDataAnnotations(boolean keepOtherDataAnnotations)
void	AnnotateWithData.setMergeInputAnnotations(boolean mergeInputAnnotations)
void	AnnotateWithData.setMergeLabelAnnotations(boolean mergeLabelAnnotations)
void	OverwriteAnnotations.setMergeMode(JIPipeTextAnnotationMergeMode mergeMode)
void	AnnotateByProjectPaths.setMergeMode(JIPipeTextAnnotationMergeMode mergeMode)
void	DataAnnotationToStringAnnotation.setNameFilter(StringQueryExpression nameFilter)
void	RemoveDataAnnotations.setNameFilter(StringQueryExpression nameFilter)
void	RemoveArrayAnnotationsAlgorithm.setRemoveColumn(boolean removeColumn)
void	OverwriteAnnotations.setRemoveExistingAnnotationsFilter(JIPipeExpressionParameter removeExistingAnnotationsFilter)
void	ConvertToAnnotationTable.setRemoveOutputAnnotations(boolean removeOutputAnnotations)
void	SimplifyAnnotationsAlgorithm.setRenameFunction(StringQueryExpression renameFunction)
void	RenameDataAnnotation.setRenamingItems(StringQueryExpressionAndStringPairParameter.List renamingItems)
void	RenameAnnotation.setRenamingItems(StringQueryExpressionAndStringPairParameter.List renamingItems)
void	OverwriteAnnotations.setSourceAnnotationFilter(JIPipeExpressionParameter sourceAnnotationFilter)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.artifacts

Methods in org.hkijena.jipipe.plugins.artifacts with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeArtifactAccelerationPreference	JIPipeArtifactApplicationSettings.getAccelerationPreference()
Vector2iParameter	JIPipeArtifactApplicationSettings.getAccelerationPreferenceVersions()
OptionalPathParameter	JIPipeArtifactApplicationSettings.getOverrideInstallationPath()
JIPipeArtifactRepositoryReferenceList	JIPipeArtifactApplicationSettings.getRepositories()
boolean	JIPipeArtifactApplicationSettings.isAutoConfigureAccelerationOnNextStartup()
boolean	JIPipeArtifactApplicationSettings.isAutoDownload()
boolean	JIPipeArtifactApplicationSettings.isShowConnectionIssueBallon()
void	JIPipeArtifactApplicationSettings.setAccelerationPreference(JIPipeArtifactAccelerationPreference accelerationPreference)
void	JIPipeArtifactApplicationSettings.setAccelerationPreferenceVersions(Vector2iParameter accelerationPreferenceVersions)
void	JIPipeArtifactApplicationSettings.setAutoConfigureAccelerationOnNextStartup(boolean autoConfigureAccelerationOnNextStartup)
void	JIPipeArtifactApplicationSettings.setAutoDownload(boolean autoDownload)
void	JIPipeArtifactApplicationSettings.setOverrideInstallationPath(OptionalPathParameter overrideInstallationPath)
void	JIPipeArtifactApplicationSettings.setRepositories(JIPipeArtifactRepositoryReferenceList repositories)
void	JIPipeArtifactApplicationSettings.setShowConnectionIssueBallon(boolean showConnectionIssueBallon)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.cellpose

Methods in org.hkijena.jipipe.plugins.cellpose with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalPythonEnvironment	CellposePluginProjectSettings.getCellpose2Environment()
OptionalPythonEnvironment	CellposePluginProjectSettings.getCellpose3Environment()
OptionalPythonEnvironment	Cellpose3PluginApplicationSettings.getDefaultEnvironment()
OptionalPythonEnvironment	Cellpose2PluginApplicationSettings.getDefaultEnvironment()
void	CellposePluginProjectSettings.setCellpose2Environment(OptionalPythonEnvironment cellpose2Environment)
void	CellposePluginProjectSettings.setCellpose3Environment(OptionalPythonEnvironment cellpose3Environment)
void	Cellpose3PluginApplicationSettings.setDefaultEnvironment(OptionalPythonEnvironment defaultEnvironment)
void	Cellpose2PluginApplicationSettings.setDefaultEnvironment(OptionalPythonEnvironment defaultEnvironment)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.cellpose.algorithms.cp2

Methods in org.hkijena.jipipe.plugins.cellpose.algorithms.cp2 with annotations of type JIPipeParameter

Modifier and Type	Method and Description
Cellpose2ChannelSettings	Cellpose2SegmentationInferenceAlgorithm.getChannelSettings()
Cellpose2ChannelSettings	Cellpose2TrainingAlgorithm.getChannelSettings()
OptionalDoubleParameter	Cellpose2SegmentationInferenceAlgorithm.getDiameter()
OptionalDoubleParameter	Cellpose2TrainingAlgorithm.getDiameter()
OptionalTextAnnotationNameParameter	Cellpose2SegmentationInferenceAlgorithm.getDiameterAnnotation()
Cellpose2SegmentationTweaksSettings	Cellpose2SegmentationInferenceAlgorithm.getEnhancementParameters()
Cellpose2GPUSettings	Cellpose2SegmentationInferenceAlgorithm.getGpuSettings()
Cellpose2GPUSettings	Cellpose2TrainingAlgorithm.getGpuSettings()
DataAnnotationQueryExpression	Cellpose2TrainingAlgorithm.getLabelDataAnnotation()
OptionalTextAnnotationNameParameter	ImportPretrainedCellpose2ModelAlgorithm.getModelNameAnnotation()
PretrainedCellpose2SegmentationModelList	ImportPretrainedCellpose2ModelAlgorithm.getModels()
int	Cellpose2TrainingAlgorithm.getNumEpochs()
OptionalPythonEnvironment	Cellpose2SegmentationInferenceAlgorithm.getOverrideEnvironment()
OptionalPythonEnvironment	Cellpose2TrainingAlgorithm.getOverrideEnvironment()
Cellpose2SegmentationOutputSettings	Cellpose2SegmentationInferenceAlgorithm.getSegmentationOutputSettings()
Cellpose2SegmentationThresholdSettings	Cellpose2SegmentationInferenceAlgorithm.getThresholdParameters()
Cellpose2TrainingTweaksSettings	Cellpose2TrainingAlgorithm.getTweaksSettings()
boolean	Cellpose2SegmentationInferenceAlgorithm.isCleanUpAfterwards()
boolean	Cellpose2TrainingAlgorithm.isCleanUpAfterwards()
boolean	Cellpose2SegmentationInferenceAlgorithm.isEnable3D()
boolean	Cellpose2TrainingAlgorithm.isEnable3D()
boolean	Cellpose2SegmentationInferenceAlgorithm.isEnableMultiChannel()
boolean	Cellpose2SegmentationInferenceAlgorithm.isSuppressLogs()
boolean	Cellpose2TrainingAlgorithm.isSuppressLogs()
boolean	Cellpose2TrainingAlgorithm.isTrainSizeModel()
void	Cellpose2SegmentationInferenceAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards)
void	Cellpose2TrainingAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards)
void	Cellpose2SegmentationInferenceAlgorithm.setDiameter(OptionalDoubleParameter diameter)
void	Cellpose2TrainingAlgorithm.setDiameter(OptionalDoubleParameter diameter)
void	Cellpose2SegmentationInferenceAlgorithm.setDiameterAnnotation(OptionalTextAnnotationNameParameter diameterAnnotation)
void	Cellpose2SegmentationInferenceAlgorithm.setEnable3D(boolean enable3D)
void	Cellpose2TrainingAlgorithm.setEnable3D(boolean enable3D)
void	Cellpose2SegmentationInferenceAlgorithm.setEnableMultiChannel(boolean enableMultiChannel)
void	Cellpose2TrainingAlgorithm.setLabelDataAnnotation(DataAnnotationQueryExpression labelDataAnnotation)
void	ImportPretrainedCellpose2ModelAlgorithm.setModelNameAnnotation(OptionalTextAnnotationNameParameter modelNameAnnotation)
void	ImportPretrainedCellpose2ModelAlgorithm.setModels(PretrainedCellpose2SegmentationModelList models)
void	Cellpose2TrainingAlgorithm.setNumEpochs(int numEpochs)
void	Cellpose2SegmentationInferenceAlgorithm.setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment)
void	Cellpose2TrainingAlgorithm.setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment)
void	Cellpose2SegmentationInferenceAlgorithm.setSuppressLogs(boolean suppressLogs)
void	Cellpose2TrainingAlgorithm.setSuppressLogs(boolean suppressLogs)
void	Cellpose2TrainingAlgorithm.setTrainSizeModel(boolean trainSizeModel)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.cellpose.algorithms.cp3

Methods in org.hkijena.jipipe.plugins.cellpose.algorithms.cp3 with annotations of type JIPipeParameter

Modifier and Type	Method and Description
Cellpose2ChannelSettings	Cellpose3DenoiseInferenceAlgorithm.getChannelSettings()
Cellpose2ChannelSettings	Cellpose3SegmentationTrainingAlgorithm.getChannelSettings()
Cellpose2ChannelSettings	Cellpose3SegmentationInferenceAlgorithm.getChannelSettings()
OptionalDoubleParameter	Cellpose3DenoiseInferenceAlgorithm.getDiameter()
OptionalDoubleParameter	Cellpose3SegmentationTrainingAlgorithm.getDiameter()
OptionalDoubleParameter	Cellpose3DenoiseTrainingAlgorithm.getDiameter()
OptionalDoubleParameter	Cellpose3SegmentationInferenceAlgorithm.getDiameter()
OptionalTextAnnotationNameParameter	Cellpose3DenoiseInferenceAlgorithm.getDiameterAnnotation()
OptionalTextAnnotationNameParameter	Cellpose3SegmentationInferenceAlgorithm.getDiameterAnnotation()
Cellpose3SegmentationTweaksSettings	Cellpose3SegmentationInferenceAlgorithm.getEnhancementParameters()
Cellpose2GPUSettings	Cellpose3DenoiseInferenceAlgorithm.getGpuSettings()
Cellpose2GPUSettings	Cellpose3SegmentationTrainingAlgorithm.getGpuSettings()
Cellpose2GPUSettings	Cellpose3DenoiseTrainingAlgorithm.getGpuSettings()
Cellpose2GPUSettings	Cellpose3SegmentationInferenceAlgorithm.getGpuSettings()
DataAnnotationQueryExpression	Cellpose3SegmentationTrainingAlgorithm.getLabelDataAnnotation()
DataAnnotationQueryExpression	Cellpose3DenoiseTrainingAlgorithm.getLabelDataAnnotation()
OptionalTextAnnotationNameParameter	ImportPretrainedCellpose3SegmentationModelAlgorithm.getModelNameAnnotation()
OptionalTextAnnotationNameParameter	ImportPretrainedCellpose3DenoiseModelAlgorithm.getModelNameAnnotation()
PretrainedCellpose3SegmentationModelList	ImportPretrainedCellpose3SegmentationModelAlgorithm.getModels()
PretrainedCellpose3DenoiseModelList	ImportPretrainedCellpose3DenoiseModelAlgorithm.getModels()
Cellpose3DenoiseTrainingNoiseSettings	Cellpose3DenoiseTrainingAlgorithm.getNoiseSettings()
int	Cellpose3SegmentationTrainingAlgorithm.getNumEpochs()
int	Cellpose3DenoiseTrainingAlgorithm.getNumEpochs()
OptionalPythonEnvironment	Cellpose3DenoiseInferenceAlgorithm.getOverrideEnvironment()
OptionalPythonEnvironment	Cellpose3SegmentationTrainingAlgorithm.getOverrideEnvironment()
OptionalPythonEnvironment	Cellpose3DenoiseTrainingAlgorithm.getOverrideEnvironment()
OptionalPythonEnvironment	Cellpose3SegmentationInferenceAlgorithm.getOverrideEnvironment()
Cellpose2SegmentationOutputSettings	Cellpose3SegmentationInferenceAlgorithm.getSegmentationOutputSettings()
Cellpose2SegmentationThresholdSettings	Cellpose3SegmentationInferenceAlgorithm.getThresholdParameters()
Cellpose3SegmentationTrainingTweaksSettings	Cellpose3SegmentationTrainingAlgorithm.getTweaksSettings()
Cellpose3DenoiseTrainingTweaksSettings	Cellpose3DenoiseTrainingAlgorithm.getTweaksSettings()
boolean	Cellpose3DenoiseInferenceAlgorithm.isCleanUpAfterwards()
boolean	Cellpose3SegmentationTrainingAlgorithm.isCleanUpAfterwards()
boolean	Cellpose3DenoiseTrainingAlgorithm.isCleanUpAfterwards()
boolean	Cellpose3SegmentationInferenceAlgorithm.isCleanUpAfterwards()
boolean	Cellpose3SegmentationInferenceAlgorithm.isEnable3D()
boolean	Cellpose3DenoiseInferenceAlgorithm.isEnable3DDenoising()
boolean	Cellpose3SegmentationTrainingAlgorithm.isEnable3DSegmentation()
boolean	Cellpose3DenoiseTrainingAlgorithm.isEnable3DSegmentation()
boolean	Cellpose3DenoiseInferenceAlgorithm.isEnableMultiChannel()
boolean	Cellpose3SegmentationInferenceAlgorithm.isEnableMultiChannel()
boolean	Cellpose3DenoiseInferenceAlgorithm.isSuppressLogs()
boolean	Cellpose3SegmentationTrainingAlgorithm.isSuppressLogs()
boolean	Cellpose3DenoiseTrainingAlgorithm.isSuppressLogs()
boolean	Cellpose3SegmentationInferenceAlgorithm.isSuppressLogs()
boolean	Cellpose3SegmentationTrainingAlgorithm.isTrainSizeModel()
void	Cellpose3DenoiseInferenceAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards)
void	Cellpose3SegmentationTrainingAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards)
void	Cellpose3DenoiseTrainingAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards)
void	Cellpose3SegmentationInferenceAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards)
void	Cellpose3DenoiseInferenceAlgorithm.setDiameter(OptionalDoubleParameter diameter)
void	Cellpose3SegmentationTrainingAlgorithm.setDiameter(OptionalDoubleParameter diameter)
void	Cellpose3DenoiseTrainingAlgorithm.setDiameter(OptionalDoubleParameter diameter)
void	Cellpose3SegmentationInferenceAlgorithm.setDiameter(OptionalDoubleParameter diameter)
void	Cellpose3DenoiseInferenceAlgorithm.setDiameterAnnotation(OptionalTextAnnotationNameParameter diameterAnnotation)
void	Cellpose3SegmentationInferenceAlgorithm.setDiameterAnnotation(OptionalTextAnnotationNameParameter diameterAnnotation)
void	Cellpose3SegmentationInferenceAlgorithm.setEnable3D(boolean enable3D)
void	Cellpose3DenoiseInferenceAlgorithm.setEnable3DDenoising(boolean enable3DDenoising)
void	Cellpose3SegmentationTrainingAlgorithm.setEnable3DSegmentation(boolean enable3DSegmentation)
void	Cellpose3DenoiseTrainingAlgorithm.setEnable3DSegmentation(boolean enable3DSegmentation)
void	Cellpose3DenoiseInferenceAlgorithm.setEnableMultiChannel(boolean enableMultiChannel)
void	Cellpose3SegmentationInferenceAlgorithm.setEnableMultiChannel(boolean enableMultiChannel)
void	Cellpose3SegmentationTrainingAlgorithm.setLabelDataAnnotation(DataAnnotationQueryExpression labelDataAnnotation)
void	Cellpose3DenoiseTrainingAlgorithm.setLabelDataAnnotation(DataAnnotationQueryExpression labelDataAnnotation)
void	ImportPretrainedCellpose3SegmentationModelAlgorithm.setModelNameAnnotation(OptionalTextAnnotationNameParameter modelNameAnnotation)
void	ImportPretrainedCellpose3DenoiseModelAlgorithm.setModelNameAnnotation(OptionalTextAnnotationNameParameter modelNameAnnotation)
void	ImportPretrainedCellpose3DenoiseModelAlgorithm.setModels(PretrainedCellpose3DenoiseModelList models)
void	ImportPretrainedCellpose3SegmentationModelAlgorithm.setModels(PretrainedCellpose3SegmentationModelList models)
void	Cellpose3SegmentationTrainingAlgorithm.setNumEpochs(int numEpochs)
void	Cellpose3DenoiseTrainingAlgorithm.setNumEpochs(int numEpochs)
void	Cellpose3DenoiseInferenceAlgorithm.setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment)
void	Cellpose3SegmentationTrainingAlgorithm.setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment)
void	Cellpose3DenoiseTrainingAlgorithm.setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment)
void	Cellpose3SegmentationInferenceAlgorithm.setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment)
void	Cellpose3DenoiseInferenceAlgorithm.setSuppressLogs(boolean suppressLogs)
void	Cellpose3SegmentationTrainingAlgorithm.setSuppressLogs(boolean suppressLogs)
void	Cellpose3DenoiseTrainingAlgorithm.setSuppressLogs(boolean suppressLogs)
void	Cellpose3SegmentationInferenceAlgorithm.setSuppressLogs(boolean suppressLogs)
void	Cellpose3SegmentationTrainingAlgorithm.setTrainSizeModel(boolean trainSizeModel)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.cellpose.legacy.algorithms

Methods in org.hkijena.jipipe.plugins.cellpose.legacy.algorithms with annotations of type JIPipeParameter

Modifier and Type	Method and Description
int	Cellpose1TrainingAlgorithm.getBatchSize() Deprecated.
Cellpose2ChannelSettings	LegacyCellpose2TrainingAlgorithm.getChannelSettings() Deprecated.
Cellpose2ChannelSettings	LegacyCellpose2InferenceAlgorithm.getChannelSettings() Deprecated.
int	Cellpose1TrainingAlgorithm.getDiameter() Deprecated.
OptionalDoubleParameter	LegacyCellpose2TrainingAlgorithm.getDiameter() Deprecated.
OptionalDoubleParameter	Cellpose1InferenceAlgorithm.getDiameter() Deprecated.
OptionalDoubleParameter	LegacyCellpose2InferenceAlgorithm.getDiameter() Deprecated.
OptionalTextAnnotationNameParameter	Cellpose1InferenceAlgorithm.getDiameterAnnotation() Deprecated.
OptionalTextAnnotationNameParameter	LegacyCellpose2InferenceAlgorithm.getDiameterAnnotation() Deprecated.
CellposeSegmentationEnhancementSettings_Old	Cellpose1InferenceAlgorithm.getEnhancementParameters() Deprecated.
Cellpose2SegmentationTweaksSettings	LegacyCellpose2InferenceAlgorithm.getEnhancementParameters() Deprecated.
Cellpose2GPUSettings	Cellpose1TrainingAlgorithm.getGpuSettings() Deprecated.
Cellpose2GPUSettings	LegacyCellpose2TrainingAlgorithm.getGpuSettings() Deprecated.
Cellpose2GPUSettings	LegacyCellpose2InferenceAlgorithm.getGpuSettings() Deprecated.
DataAnnotationQueryExpression	Cellpose1TrainingAlgorithm.getLabelDataAnnotation() Deprecated.
DataAnnotationQueryExpression	LegacyCellpose2TrainingAlgorithm.getLabelDataAnnotation() Deprecated.
double	Cellpose1TrainingAlgorithm.getLearningRate() Deprecated.
int	Cellpose1TrainingAlgorithm.getMinTrainMasks() Deprecated.
PretrainedLegacyCellpose2InferenceModel	LegacyCellpose2InferenceAlgorithm.getModel() Deprecated.
CellposeSegmentationModelSettings_Old	Cellpose1InferenceAlgorithm.getModelParameters() Deprecated.
OptionalIntegerParameter	Cellpose1TrainingAlgorithm.getNuclearChannel() Deprecated.
int	Cellpose1TrainingAlgorithm.getNumEpochs() Deprecated.
int	LegacyCellpose2TrainingAlgorithm.getNumEpochs() Deprecated.
CellposeSegmentationOutputSettings_Old	Cellpose1InferenceAlgorithm.getOutputParameters() Deprecated.
OptionalPythonEnvironment	Cellpose1TrainingAlgorithm.getOverrideEnvironment() Deprecated.
OptionalPythonEnvironment	LegacyCellpose2TrainingAlgorithm.getOverrideEnvironment() Deprecated.
OptionalPythonEnvironment	Cellpose1InferenceAlgorithm.getOverrideEnvironment() Deprecated.
OptionalPythonEnvironment	LegacyCellpose2InferenceAlgorithm.getOverrideEnvironment() Deprecated.
CellposeSegmentationPerformanceSettings_Old	Cellpose1InferenceAlgorithm.getPerformanceParameters() Deprecated.
PretrainedLegacyCellpose2TrainingModel	Cellpose1TrainingAlgorithm.getPretrainedModel() Deprecated.
PretrainedLegacyCellpose2TrainingModel	LegacyCellpose2TrainingAlgorithm.getPretrainedModel() Deprecated.
Cellpose2SegmentationOutputSettings	LegacyCellpose2InferenceAlgorithm.getSegmentationOutputSettings() Deprecated.
OptionalIntegerParameter	Cellpose1TrainingAlgorithm.getSegmentedChannel() Deprecated.
CellposeSegmentationThresholdSettings_Old	Cellpose1InferenceAlgorithm.getThresholdParameters() Deprecated.
Cellpose2SegmentationThresholdSettings	LegacyCellpose2InferenceAlgorithm.getThresholdParameters() Deprecated.
Cellpose2TrainingTweaksSettings	LegacyCellpose2TrainingAlgorithm.getTweaksSettings() Deprecated.
double	Cellpose1TrainingAlgorithm.getWeightDecay() Deprecated.
boolean	Cellpose1TrainingAlgorithm.isCleanUpAfterwards() Deprecated.
boolean	LegacyCellpose2TrainingAlgorithm.isCleanUpAfterwards() Deprecated.
boolean	Cellpose1InferenceAlgorithm.isCleanUpAfterwards() Deprecated.
boolean	LegacyCellpose2InferenceAlgorithm.isCleanUpAfterwards() Deprecated.
boolean	Cellpose1TrainingAlgorithm.isConcatenateDownsampledLayers() Deprecated.
boolean	Cellpose1TrainingAlgorithm.isEnable3DSegmentation() Deprecated.
boolean	LegacyCellpose2TrainingAlgorithm.isEnable3DSegmentation() Deprecated.
boolean	Cellpose1InferenceAlgorithm.isEnable3DSegmentation() Deprecated.
boolean	LegacyCellpose2InferenceAlgorithm.isEnable3DSegmentation() Deprecated.
boolean	Cellpose1TrainingAlgorithm.isGenerateConnectedComponents() Deprecated.
boolean	LegacyCellpose2TrainingAlgorithm.isSuppressLogs() Deprecated.
boolean	LegacyCellpose2InferenceAlgorithm.isSuppressLogs() Deprecated.
boolean	Cellpose1TrainingAlgorithm.isTrainSizeModel() Deprecated.
boolean	LegacyCellpose2TrainingAlgorithm.isTrainSizeModel() Deprecated.
boolean	Cellpose1TrainingAlgorithm.isUseResidualConnections() Deprecated.
boolean	Cellpose1TrainingAlgorithm.isUseStyleVector() Deprecated.
void	Cellpose1TrainingAlgorithm.setBatchSize(int batchSize) Deprecated.
void	Cellpose1TrainingAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards) Deprecated.
void	LegacyCellpose2TrainingAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards) Deprecated.
void	Cellpose1InferenceAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards) Deprecated.
void	LegacyCellpose2InferenceAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards) Deprecated.
void	Cellpose1TrainingAlgorithm.setConcatenateDownsampledLayers(boolean concatenateDownsampledLayers) Deprecated.
void	Cellpose1TrainingAlgorithm.setDiameter(int diameter) Deprecated.
void	LegacyCellpose2TrainingAlgorithm.setDiameter(OptionalDoubleParameter diameter) Deprecated.
void	Cellpose1InferenceAlgorithm.setDiameter(OptionalDoubleParameter diameter) Deprecated.
void	LegacyCellpose2InferenceAlgorithm.setDiameter(OptionalDoubleParameter diameter) Deprecated.
void	Cellpose1InferenceAlgorithm.setDiameterAnnotation(OptionalTextAnnotationNameParameter diameterAnnotation) Deprecated.
void	LegacyCellpose2InferenceAlgorithm.setDiameterAnnotation(OptionalTextAnnotationNameParameter diameterAnnotation) Deprecated.
void	Cellpose1TrainingAlgorithm.setEnable3DSegmentation(boolean enable3DSegmentation) Deprecated.
void	LegacyCellpose2TrainingAlgorithm.setEnable3DSegmentation(boolean enable3DSegmentation) Deprecated.
void	Cellpose1InferenceAlgorithm.setEnable3DSegmentation(boolean enable3DSegmentation) Deprecated.
void	LegacyCellpose2InferenceAlgorithm.setEnable3DSegmentation(boolean enable3DSegmentation) Deprecated.
void	Cellpose1TrainingAlgorithm.setGenerateConnectedComponents(boolean generateConnectedComponents) Deprecated.
void	Cellpose1TrainingAlgorithm.setLabelDataAnnotation(DataAnnotationQueryExpression labelDataAnnotation) Deprecated.
void	LegacyCellpose2TrainingAlgorithm.setLabelDataAnnotation(DataAnnotationQueryExpression labelDataAnnotation) Deprecated.
void	Cellpose1TrainingAlgorithm.setLearningRate(double learningRate) Deprecated.
void	Cellpose1TrainingAlgorithm.setMinTrainMasks(int minTrainMasks) Deprecated.
void	LegacyCellpose2InferenceAlgorithm.setModel(PretrainedLegacyCellpose2InferenceModel model) Deprecated.
void	Cellpose1TrainingAlgorithm.setNuclearChannel(OptionalIntegerParameter nuclearChannel) Deprecated.
void	Cellpose1TrainingAlgorithm.setNumEpochs(int numEpochs) Deprecated.
void	LegacyCellpose2TrainingAlgorithm.setNumEpochs(int numEpochs) Deprecated.
void	Cellpose1TrainingAlgorithm.setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment) Deprecated.
void	LegacyCellpose2TrainingAlgorithm.setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment) Deprecated.
void	Cellpose1InferenceAlgorithm.setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment) Deprecated.
void	LegacyCellpose2InferenceAlgorithm.setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment) Deprecated.
void	Cellpose1TrainingAlgorithm.setPretrainedModel(PretrainedLegacyCellpose2TrainingModel pretrainedModel) Deprecated.
void	LegacyCellpose2TrainingAlgorithm.setPretrainedModel(PretrainedLegacyCellpose2TrainingModel pretrainedModel) Deprecated.
void	Cellpose1TrainingAlgorithm.setSegmentedChannel(OptionalIntegerParameter segmentedChannel) Deprecated.
void	LegacyCellpose2TrainingAlgorithm.setSuppressLogs(boolean suppressLogs) Deprecated.
void	LegacyCellpose2InferenceAlgorithm.setSuppressLogs(boolean suppressLogs) Deprecated.
void	Cellpose1TrainingAlgorithm.setTrainSizeModel(boolean trainSizeModel) Deprecated.
void	LegacyCellpose2TrainingAlgorithm.setTrainSizeModel(boolean trainSizeModel) Deprecated.
void	Cellpose1TrainingAlgorithm.setUseResidualConnections(boolean useResidualConnections) Deprecated.
void	Cellpose1TrainingAlgorithm.setUseStyleVector(boolean useStyleVector) Deprecated.
void	Cellpose1TrainingAlgorithm.setWeightDecay(double weightDecay) Deprecated.

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.cellpose.legacy.parameters

Methods in org.hkijena.jipipe.plugins.cellpose.legacy.parameters with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalDoubleParameter	CellposeSegmentationEnhancementSettings_Old.getAnisotropy() Deprecated.
int	CellposeSegmentationPerformanceSettings_Old.getBatchSize() Deprecated.
double	CellposeSegmentationThresholdSettings_Old.getCellProbabilityThreshold() Deprecated.
double	CellposeSegmentationThresholdSettings_Old.getFlowThreshold() Deprecated.
double	CellposeSegmentationModelSettings_Old.getMeanDiameter() Deprecated.
int	CellposeSegmentationThresholdSettings_Old.getMinSize() Deprecated.
PretrainedLegacyCellpose2InferenceModel	CellposeSegmentationModelSettings_Old.getModel() Deprecated.
double	CellposeSegmentationThresholdSettings_Old.getStitchThreshold() Deprecated.
double	CellposeSegmentationPerformanceSettings_Old.getTileOverlap() Deprecated.
boolean	CellposeSegmentationEnhancementSettings_Old.isAugment() Deprecated.
boolean	CellposeSegmentationModelSettings_Old.isEnableGPU() Deprecated.
boolean	CellposeSegmentationEnhancementSettings_Old.isInterpolate() Deprecated.
boolean	CellposeSegmentationEnhancementSettings_Old.isNetAverage() Deprecated.
boolean	CellposeSegmentationEnhancementSettings_Old.isNormalize() Deprecated.
boolean	CellposeSegmentationOutputSettings_Old.isOutputFlows() Deprecated.
boolean	CellposeSegmentationOutputSettings_Old.isOutputLabels() Deprecated.
boolean	CellposeSegmentationOutputSettings_Old.isOutputProbabilities() Deprecated.
boolean	CellposeSegmentationOutputSettings_Old.isOutputROI() Deprecated.
boolean	CellposeSegmentationOutputSettings_Old.isOutputStyles() Deprecated.
boolean	CellposeSegmentationPerformanceSettings_Old.isResample() Deprecated.
boolean	CellposeSegmentationPerformanceSettings_Old.isTile() Deprecated.
void	CellposeSegmentationEnhancementSettings_Old.setAnisotropy(OptionalDoubleParameter anisotropy) Deprecated.
void	CellposeSegmentationEnhancementSettings_Old.setAugment(boolean augment) Deprecated.
void	CellposeSegmentationPerformanceSettings_Old.setBatchSize(int batchSize) Deprecated.
void	CellposeSegmentationThresholdSettings_Old.setCellProbabilityThreshold(double cellProbabilityThreshold) Deprecated.
void	CellposeSegmentationModelSettings_Old.setEnableGPU(boolean enableGPU) Deprecated.
void	CellposeSegmentationThresholdSettings_Old.setFlowThreshold(double flowThreshold) Deprecated.
void	CellposeSegmentationEnhancementSettings_Old.setInterpolate(boolean interpolate) Deprecated.
void	CellposeSegmentationModelSettings_Old.setMeanDiameter(double meanDiameter) Deprecated.
void	CellposeSegmentationThresholdSettings_Old.setMinSize(int minSize) Deprecated.
void	CellposeSegmentationModelSettings_Old.setModel(PretrainedLegacyCellpose2InferenceModel model) Deprecated.
void	CellposeSegmentationEnhancementSettings_Old.setNetAverage(boolean netAverage) Deprecated.
void	CellposeSegmentationEnhancementSettings_Old.setNormalize(boolean normalize) Deprecated.
void	CellposeSegmentationOutputSettings_Old.setOutputFlows(boolean outputFlows) Deprecated.
void	CellposeSegmentationOutputSettings_Old.setOutputLabels(boolean outputLabels) Deprecated.
void	CellposeSegmentationOutputSettings_Old.setOutputProbabilities(boolean outputProbabilities) Deprecated.
void	CellposeSegmentationOutputSettings_Old.setOutputROI(boolean outputROI) Deprecated.
void	CellposeSegmentationOutputSettings_Old.setOutputStyles(boolean outputStyles) Deprecated.
void	CellposeSegmentationPerformanceSettings_Old.setResample(boolean resample) Deprecated.
void	CellposeSegmentationThresholdSettings_Old.setStitchThreshold(double stitchThreshold) Deprecated.
void	CellposeSegmentationPerformanceSettings_Old.setTile(boolean tile) Deprecated.
void	CellposeSegmentationPerformanceSettings_Old.setTileOverlap(double tileOverlap) Deprecated.

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.cellpose.parameters.cp2

Methods in org.hkijena.jipipe.plugins.cellpose.parameters.cp2 with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalDoubleParameter	Cellpose2SegmentationTweaksSettings.getAnisotropy()
int	Cellpose2TrainingTweaksSettings.getBatchSize()
double	Cellpose2SegmentationThresholdSettings.getCellProbabilityThreshold()
double	Cellpose2SegmentationThresholdSettings.getFlowThreshold()
OptionalIntegerParameter	Cellpose2GPUSettings.getGpuDevice()
double	Cellpose2TrainingTweaksSettings.getLearningRate()
int	Cellpose2TrainingTweaksSettings.getMinTrainMasks()
OptionalIntegerParameter	Cellpose2ChannelSettings.getNuclearChannel()
OptionalIntegerParameter	Cellpose2ChannelSettings.getSegmentedChannel()
OptionalDoubleParameter	Cellpose2SegmentationThresholdSettings.getStitchThreshold()
double	Cellpose2TrainingTweaksSettings.getWeightDecay()
boolean	Cellpose2ChannelSettings.isAllChannels()
boolean	Cellpose2TrainingTweaksSettings.isConcatenateDownsampledLayers()
boolean	Cellpose2SegmentationTweaksSettings.isDisableResample()
boolean	Cellpose2GPUSettings.isEnableGPU()
boolean	Cellpose2SegmentationThresholdSettings.isExcludeOnEdges()
boolean	Cellpose2TrainingTweaksSettings.isGenerateConnectedComponents()
boolean	Cellpose2SegmentationTweaksSettings.isInterpolate()
boolean	Cellpose2ChannelSettings.isInvert()
boolean	Cellpose2SegmentationTweaksSettings.isNetAverage()
boolean	Cellpose2SegmentationTweaksSettings.isNormalize()
boolean	Cellpose2SegmentationOutputSettings.isOutputFlowsD()
boolean	Cellpose2SegmentationOutputSettings.isOutputFlowsXY()
boolean	Cellpose2SegmentationOutputSettings.isOutputFlowsZ()
boolean	Cellpose2SegmentationOutputSettings.isOutputLabels()
boolean	Cellpose2SegmentationOutputSettings.isOutputProbabilities()
boolean	Cellpose2SegmentationOutputSettings.isOutputROI()
boolean	Cellpose2TrainingTweaksSettings.isUseResidualConnections()
boolean	Cellpose2TrainingTweaksSettings.isUseStyleVector()
void	Cellpose2ChannelSettings.setAllChannels(boolean allChannels)
void	Cellpose2SegmentationTweaksSettings.setAnisotropy(OptionalDoubleParameter anisotropy)
void	Cellpose2TrainingTweaksSettings.setBatchSize(int batchSize)
void	Cellpose2SegmentationThresholdSettings.setCellProbabilityThreshold(double cellProbabilityThreshold)
void	Cellpose2TrainingTweaksSettings.setConcatenateDownsampledLayers(boolean concatenateDownsampledLayers)
void	Cellpose2SegmentationTweaksSettings.setDisableResample(boolean disableResample)
void	Cellpose2GPUSettings.setEnableGPU(boolean enableGPU)
void	Cellpose2SegmentationThresholdSettings.setExcludeOnEdges(boolean excludeOnEdges)
void	Cellpose2SegmentationThresholdSettings.setFlowThreshold(double flowThreshold)
void	Cellpose2TrainingTweaksSettings.setGenerateConnectedComponents(boolean generateConnectedComponents)
void	Cellpose2GPUSettings.setGpuDevice(OptionalIntegerParameter gpuDevice)
void	Cellpose2SegmentationTweaksSettings.setInterpolate(boolean interpolate)
void	Cellpose2ChannelSettings.setInvert(boolean invert)
void	Cellpose2TrainingTweaksSettings.setLearningRate(double learningRate)
void	Cellpose2TrainingTweaksSettings.setMinTrainMasks(int minTrainMasks)
void	Cellpose2SegmentationTweaksSettings.setNetAverage(boolean netAverage)
void	Cellpose2SegmentationTweaksSettings.setNormalize(boolean normalize)
void	Cellpose2ChannelSettings.setNuclearChannel(OptionalIntegerParameter nuclearChannel)
void	Cellpose2SegmentationOutputSettings.setOutputFlowsD(boolean outputFlowsD)
void	Cellpose2SegmentationOutputSettings.setOutputFlowsXY(boolean outputFlowsXY)
void	Cellpose2SegmentationOutputSettings.setOutputFlowsZ(boolean outputFlowsZ)
void	Cellpose2SegmentationOutputSettings.setOutputLabels(boolean outputLabels)
void	Cellpose2SegmentationOutputSettings.setOutputProbabilities(boolean outputProbabilities)
void	Cellpose2SegmentationOutputSettings.setOutputROI(boolean outputROI)
void	Cellpose2ChannelSettings.setSegmentedChannel(OptionalIntegerParameter segmentedChannel)
void	Cellpose2SegmentationThresholdSettings.setStitchThreshold(OptionalDoubleParameter stitchThreshold)
void	Cellpose2TrainingTweaksSettings.setUseResidualConnections(boolean useResidualConnections)
void	Cellpose2TrainingTweaksSettings.setUseStyleVector(boolean useStyleVector)
void	Cellpose2TrainingTweaksSettings.setWeightDecay(double weightDecay)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.cellpose.parameters.cp3

Methods in org.hkijena.jipipe.plugins.cellpose.parameters.cp3 with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalDoubleParameter	Cellpose3SegmentationTweaksSettings.getAnisotropy()
int	Cellpose3SegmentationTrainingTweaksSettings.getBatchSize()
double	Cellpose3DenoiseTrainingNoiseSettings.getCustomBeta()
double	Cellpose3DenoiseTrainingNoiseSettings.getCustomBlur()
double	Cellpose3DenoiseTrainingNoiseSettings.getCustomDownsample()
double	Cellpose3DenoiseTrainingNoiseSettings.getCustomGBlur()
double	Cellpose3DenoiseTrainingNoiseSettings.getCustomPoisson()
double	Cellpose3SegmentationTweaksSettings.getFlow3DSmoothing()
double	Cellpose3DenoiseTrainingTweaksSettings.getLambdaPerceptual()
double	Cellpose3DenoiseTrainingTweaksSettings.getLambdaReconstruction()
double	Cellpose3DenoiseTrainingTweaksSettings.getLambdaSegmentation()
double	Cellpose3SegmentationTrainingTweaksSettings.getLearningRate()
double	Cellpose3DenoiseTrainingTweaksSettings.getLearningRate()
OptionalIntegerParameter	Cellpose3DenoiseTrainingNoiseSettings.getMaxDownsampling()
int	Cellpose3SegmentationTrainingTweaksSettings.getMinTrainMasks()
int	Cellpose3SegmentationTweaksSettings.getNiter()
Cellpose3DenoiseTrainingNoiseType	Cellpose3DenoiseTrainingNoiseSettings.getNoiseType()
OptionalVector2iParameter	Cellpose3SegmentationTweaksSettings.getNormalizePercentile()
OptionalIntegerParameter	Cellpose3SegmentationTrainingTweaksSettings.getNumTestImagesPerEpoch()
OptionalIntegerParameter	Cellpose3DenoiseTrainingTweaksSettings.getNumTestImagesPerEpoch()
OptionalIntegerParameter	Cellpose3SegmentationTrainingTweaksSettings.getNumTrainingImagesPerEpoch()
OptionalIntegerParameter	Cellpose3DenoiseTrainingTweaksSettings.getNumTrainingImagesPerEpoch()
PretrainedCellpose3SegmentationModel	Cellpose3DenoiseTrainingTweaksSettings.getSegmentationModel()
double	Cellpose3SegmentationTrainingTweaksSettings.getWeightDecay()
double	Cellpose3DenoiseTrainingTweaksSettings.getWeightDecay()
boolean	Cellpose3SegmentationTrainingTweaksSettings.isGenerateConnectedComponents()
boolean	Cellpose3DenoiseTrainingTweaksSettings.isGenerateConnectedComponents()
boolean	Cellpose3SegmentationTweaksSettings.isInterpolate()
boolean	Cellpose3SegmentationTweaksSettings.isNormalize()
boolean	Cellpose3SegmentationTweaksSettings.isResample()
OptionalIntegerParameter	Cellpose3SegmentationTrainingTweaksSettings.isUseSGD()
void	Cellpose3SegmentationTweaksSettings.setAnisotropy(OptionalDoubleParameter anisotropy)
void	Cellpose3SegmentationTrainingTweaksSettings.setBatchSize(int batchSize)
void	Cellpose3DenoiseTrainingNoiseSettings.setCustomBeta(double customBeta)
void	Cellpose3DenoiseTrainingNoiseSettings.setCustomBlur(double customBlur)
void	Cellpose3DenoiseTrainingNoiseSettings.setCustomDownsample(double customDownsample)
void	Cellpose3DenoiseTrainingNoiseSettings.setCustomGBlur(double customGBlur)
void	Cellpose3DenoiseTrainingNoiseSettings.setCustomPoisson(double customPoisson)
void	Cellpose3SegmentationTweaksSettings.setFlow3DSmoothing(double flow3DSmoothing)
void	Cellpose3SegmentationTrainingTweaksSettings.setGenerateConnectedComponents(boolean generateConnectedComponents)
void	Cellpose3DenoiseTrainingTweaksSettings.setGenerateConnectedComponents(boolean generateConnectedComponents)
void	Cellpose3SegmentationTweaksSettings.setInterpolate(boolean interpolate)
void	Cellpose3DenoiseTrainingTweaksSettings.setLambdaPerceptual(double lambdaPerceptual)
void	Cellpose3DenoiseTrainingTweaksSettings.setLambdaReconstruction(double lambdaReconstruction)
void	Cellpose3DenoiseTrainingTweaksSettings.setLambdaSegmentation(double lambdaSegmentation)
void	Cellpose3SegmentationTrainingTweaksSettings.setLearningRate(double learningRate)
void	Cellpose3DenoiseTrainingTweaksSettings.setLearningRate(double learningRate)
void	Cellpose3DenoiseTrainingNoiseSettings.setMaxDownsampling(OptionalIntegerParameter maxDownsampling)
void	Cellpose3SegmentationTrainingTweaksSettings.setMinTrainMasks(int minTrainMasks)
void	Cellpose3SegmentationTweaksSettings.setNiter(int niter)
void	Cellpose3DenoiseTrainingNoiseSettings.setNoiseType(Cellpose3DenoiseTrainingNoiseType noiseType)
void	Cellpose3SegmentationTweaksSettings.setNormalize(boolean normalize)
void	Cellpose3SegmentationTweaksSettings.setNormalizePercentile(OptionalVector2iParameter normalizePercentile)
void	Cellpose3SegmentationTrainingTweaksSettings.setNumTestImagesPerEpoch(OptionalIntegerParameter numTestImagesPerEpoch)
void	Cellpose3DenoiseTrainingTweaksSettings.setNumTestImagesPerEpoch(OptionalIntegerParameter numTestImagesPerEpoch)
void	Cellpose3SegmentationTrainingTweaksSettings.setNumTrainingImagesPerEpoch(OptionalIntegerParameter numTrainingImagesPerEpoch)
void	Cellpose3DenoiseTrainingTweaksSettings.setNumTrainingImagesPerEpoch(OptionalIntegerParameter numTrainingImagesPerEpoch)
void	Cellpose3SegmentationTweaksSettings.setResample(boolean resample)
void	Cellpose3DenoiseTrainingTweaksSettings.setSegmentationModel(PretrainedCellpose3SegmentationModel segmentationModel)
void	Cellpose3SegmentationTrainingTweaksSettings.setUseSGD(OptionalIntegerParameter useSGD)
void	Cellpose3SegmentationTrainingTweaksSettings.setWeightDecay(double weightDecay)
void	Cellpose3DenoiseTrainingTweaksSettings.setWeightDecay(double weightDecay)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.clij2

Methods in org.hkijena.jipipe.plugins.clij2 with annotations of type JIPipeParameter

Modifier and Type	Method and Description
ImageJCalibrationMode	CLIJPluginApplicationSettings.ContrastEnhancerSettings.getCalibrationMode()
JIPipeDynamicParameterCollection	CLIJCommandNode.getClijParameters()
CLIJPluginApplicationSettings.ContrastEnhancerSettings	CLIJPluginApplicationSettings.getContrastEnhancerSettings()
double	CLIJPluginApplicationSettings.ContrastEnhancerSettings.getCustomMax()
double	CLIJPluginApplicationSettings.ContrastEnhancerSettings.getCustomMin()
int	CLIJPluginApplicationSettings.getDevice()
CLIJSplitMode	CLIJCommandNode.getSplitMode()
boolean	CLIJPluginApplicationSettings.ContrastEnhancerSettings.isApplyToAllPlanes()
boolean	CLIJPluginApplicationSettings.isAutoCalibrateAfterPulling()
boolean	CLIJCommandNode.isAvoidGPUMemory()
boolean	CLIJPluginApplicationSettings.ContrastEnhancerSettings.isDuplicateImage()
boolean	CLIJCommandNode.isEqualizeReplicateLast()
void	CLIJPluginApplicationSettings.ContrastEnhancerSettings.setApplyToAllPlanes(boolean applyToAllPlanes)
void	CLIJPluginApplicationSettings.setAutoCalibrateAfterPulling(boolean autoCalibrateAfterPulling)
void	CLIJCommandNode.setAvoidGPUMemory(boolean avoidGPUMemory)
void	CLIJPluginApplicationSettings.ContrastEnhancerSettings.setCalibrationMode(ImageJCalibrationMode calibrationMode)
void	CLIJPluginApplicationSettings.ContrastEnhancerSettings.setCustomMax(double customMax)
void	CLIJPluginApplicationSettings.ContrastEnhancerSettings.setCustomMin(double customMin)
void	CLIJPluginApplicationSettings.setDevice(int device)
void	CLIJPluginApplicationSettings.ContrastEnhancerSettings.setDuplicateImage(boolean duplicateImage)
void	CLIJCommandNode.setEqualizeReplicateLast(boolean equalizeReplicateLast)
void	CLIJCommandNode.setSplitMode(CLIJSplitMode splitMode)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.clij2.algorithms

Methods in org.hkijena.jipipe.plugins.clij2.algorithms with annotations of type JIPipeParameter

Modifier and Type	Method and Description
String	Clij2ExecuteKernelSimpleIterating.getKernelFunction()
String	Clij2ExecuteKernelIterating.getKernelFunction()
OpenCLKernelScript	Clij2ExecuteKernelSimpleIterating.getKernelScript()
OpenCLKernelScript	Clij2ExecuteKernelIterating.getKernelScript()
PythonScript	Clij2ExecuteKernelSimpleIterating.getPreprocessingScript()
PythonScript	Clij2ExecuteKernelIterating.getPreprocessingScript()
JIPipeDynamicParameterCollection	Clij2ExecuteKernelSimpleIterating.getScriptParameters()
JIPipeDynamicParameterCollection	Clij2ExecuteKernelIterating.getScriptParameters()
boolean	Clij2PullAlgorithm.isDeallocate()
void	Clij2PullAlgorithm.setDeallocate(boolean deallocate)
void	Clij2ExecuteKernelSimpleIterating.setKernelFunction(String kernelFunction)
void	Clij2ExecuteKernelIterating.setKernelFunction(String kernelFunction)
void	Clij2ExecuteKernelSimpleIterating.setKernelScript(OpenCLKernelScript kernelScript)
void	Clij2ExecuteKernelIterating.setKernelScript(OpenCLKernelScript kernelScript)
void	Clij2ExecuteKernelSimpleIterating.setPreprocessingScript(PythonScript preprocessingScript)
void	Clij2ExecuteKernelIterating.setPreprocessingScript(PythonScript preprocessingScript)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.core.nodes

Methods in org.hkijena.jipipe.plugins.core.nodes with annotations of type JIPipeParameter

Modifier and Type	Method and Description
Color	JIPipeCommentNode.getBackgroundColor()
IconRef	JIPipeCommentNode.getIcon()
Color	JIPipeCommentNode.getTextColor()
void	JIPipeCommentNode.setBackgroundColor(Color backgroundColor)
void	JIPipeCommentNode.setIcon(IconRef icon)
void	JIPipeCommentNode.setTextColor(Color textColor)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.dataenvironment

Methods in org.hkijena.jipipe.plugins.dataenvironment with annotations of type JIPipeParameter

Modifier and Type	Method and Description
Path	JIPipeDataDirectoryEnvironment.getDirectory()
JIPipeDataDirectoryEnvironment.List	JIPipeDataDirectoryEnvironmentApplicationSettings.getPresets()
void	JIPipeDataDirectoryEnvironment.setDirectory(Path directory)
void	JIPipeDataDirectoryEnvironmentApplicationSettings.setPresets(JIPipeDataDirectoryEnvironment.List presets)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.filesystem

Methods in org.hkijena.jipipe.plugins.filesystem with annotations of type JIPipeParameter

Modifier and Type	Method and Description
boolean	JIPipeFilesystemPluginApplicationSettings.isAutoLabelOutputWithFileName()
boolean	JIPipeFilesystemPluginApplicationSettings.isRelativizePaths()
void	JIPipeFilesystemPluginApplicationSettings.setAutoLabelOutputWithFileName(boolean autoLabelOutputWithFileName)
void	JIPipeFilesystemPluginApplicationSettings.setRelativizePaths(boolean relativizePaths)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.filesystem.algorithms.local

Methods in org.hkijena.jipipe.plugins.filesystem.algorithms.local with annotations of type JIPipeParameter

Modifier and Type	Method and Description
AnnotationQueryExpression	AnnotationToPath.getAnnotationExpression()
JIPipeTextAnnotationMergeMode	SimplePathAnnotationGenerator.getAnnotationMergeStrategy()
StringAndStringPairParameter.List	ImportDataRowFolder.getAnnotations()
TableColumnSourceExpressionParameter	AnnotationTableToPaths.getColumn()
JIPipeDataAnnotationMergeMode	ImportDataTableArchive.getDataAnnotationMergeMode()
JIPipeDataAnnotationMergeMode	ImportDataTableDirectory.getDataAnnotationMergeMode()
JIPipeDataInfoRef	ImportDataRowFolder.getDataType()
JIPipeDataByMetadataExporter	ExportData.getExporter()
JIPipeDataByMetadataExporter	ExportDataByParameter.getExporter()
PathQueryExpression	ModifyPath.getExpression()
JIPipeExpressionParameter	ModifyPathWithExpression.getExpression()
OptionalTextAnnotationNameParameter	AnnotateWithPathProperties.getFileNameAnnotation()
DataExportExpressionParameter	ConvertToExportedPath.getFilePath()
DataExportExpressionParameter	ExportDataByParameter2.getFilePath()
PathQueryExpression	ListSubfolders.getFilters()
PathQueryExpression	ListFiles.getFilters()
PathQueryExpression	FilterPaths.getFilters()
String	SimpleFileAnnotationGenerator.getGeneratedAnnotation()
String	SimpleFolderAnnotationGenerator.getGeneratedAnnotation()
String	SimplePathAnnotationGenerator.getGeneratedAnnotation()
String	ImportDataTableArchive.getInternalPath()
OptionalTextAnnotationNameParameter	AnnotateWithPathProperties.getLastModifiedTime()
int	ExtractParent.getOrder()
Path	ExportDataTableByParameter.getOutputDirectory()
Path	ExportDataByParameter.getOutputDirectory()
Path	RelativizeByParameter.getParentPath()
OptionalTextAnnotationNameParameter	AnnotateWithPathProperties.getParentPathAnnotation()
String	RenameByString.getPathName()
OptionalTextAnnotationNameParameter	AnnotateWithPathProperties.getSizeAnnotation()
String	ListSubfolders.getSubFolder()
String	ListFiles.getSubFolder()
Path	ConcatenateByParameter.getSubPath()
JIPipeTextAnnotationMergeMode	ImportDataTableArchive.getTextAnnotationMergeMode()
JIPipeTextAnnotationMergeMode	ImportDataTableDirectory.getTextAnnotationMergeMode()
OptionalTextAnnotationNameParameter	AnnotateWithPathProperties.getTypeAnnotation()
boolean	CopyPath.isAppendDirectoryNameToTarget()
boolean	FilterPaths.isEnableFilter()
boolean	ExportDataByParameter2.isForceName()
boolean	SimplePathAnnotationGenerator.isFullPath()
boolean	ImportDataTableArchive.isIgnoreImportedDataAnnotations()
boolean	ImportDataTableDirectory.isIgnoreImportedDataAnnotations()
boolean	ImportDataTableArchive.isIgnoreImportedTextAnnotations()
boolean	ImportDataTableDirectory.isIgnoreImportedTextAnnotations()
boolean	ImportDataTableArchive.isIgnoreInputDataAnnotations()
boolean	ImportDataTableDirectory.isIgnoreInputDataAnnotations()
boolean	ImportDataTableArchive.isIgnoreInputTextAnnotations()
boolean	ImportDataTableDirectory.isIgnoreInputTextAnnotations()
boolean	FilterPaths.isOutputFiles()
boolean	FilterPaths.isOutputFolders()
boolean	FilterPaths.isOutputNonExisting()
boolean	ListSubfolders.isRecursive()
boolean	ListFiles.isRecursive()
boolean	ListSubfolders.isRecursiveFollowsLinks()
boolean	ListFiles.isRecursiveFollowsLinks()
boolean	ExportDataTableByParameter.isRelativeToProjectDir()
boolean	ExportDataByParameter.isRelativeToProjectDir()
boolean	SimplePathAnnotationGenerator.isRemoveExtensions()
boolean	CopyPath.isSkipExisting()
boolean	CopyPath.isSkipInvalid()
boolean	ExportData.isSplitBySlotName()
boolean	ExportDataByParameter.isSplitBySlotName()
boolean	CreateDirectory.isWithParents()
void	AnnotationToPath.setAnnotationExpression(AnnotationQueryExpression annotationExpression)
void	SimplePathAnnotationGenerator.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	ImportDataRowFolder.setAnnotations(StringAndStringPairParameter.List annotations)
void	CopyPath.setAppendDirectoryNameToTarget(boolean appendDirectoryNameToTarget)
void	AnnotationTableToPaths.setColumn(TableColumnSourceExpressionParameter column)
void	ImportDataTableArchive.setDataAnnotationMergeMode(JIPipeDataAnnotationMergeMode dataAnnotationMergeMode)
void	ImportDataTableDirectory.setDataAnnotationMergeMode(JIPipeDataAnnotationMergeMode dataAnnotationMergeMode)
void	ImportDataRowFolder.setDataType(JIPipeDataInfoRef dataType)
void	FilterPaths.setEnableFilter(boolean enableFilter)
void	ModifyPathWithExpression.setExpression(JIPipeExpressionParameter expression)
void	ModifyPath.setExpression(PathQueryExpression expression)
void	AnnotateWithPathProperties.setFileNameAnnotation(OptionalTextAnnotationNameParameter fileNameAnnotation)
void	ConvertToExportedPath.setFilePath(DataExportExpressionParameter filePath)
void	ExportDataByParameter2.setFilePath(DataExportExpressionParameter filePath)
void	ListSubfolders.setFilters(PathQueryExpression filters)
void	ListFiles.setFilters(PathQueryExpression filters)
void	FilterPaths.setFilters(PathQueryExpression filters)
void	ExportDataByParameter2.setForceName(boolean forceName)
void	SimplePathAnnotationGenerator.setFullPath(boolean fullPath)
void	SimpleFileAnnotationGenerator.setGeneratedAnnotation(String generatedAnnotation) Sets generated annotation type
void	SimpleFolderAnnotationGenerator.setGeneratedAnnotation(String generatedAnnotation) Sets the generated annotation type
void	SimplePathAnnotationGenerator.setGeneratedAnnotation(String generatedAnnotation)
void	ImportDataTableArchive.setIgnoreImportedDataAnnotations(boolean ignoreImportedDataAnnotations)
void	ImportDataTableDirectory.setIgnoreImportedDataAnnotations(boolean ignoreImportedDataAnnotations)
void	ImportDataTableArchive.setIgnoreImportedTextAnnotations(boolean ignoreImportedTextAnnotations)
void	ImportDataTableDirectory.setIgnoreImportedTextAnnotations(boolean ignoreImportedTextAnnotations)
void	ImportDataTableArchive.setIgnoreInputDataAnnotations(boolean ignoreInputDataAnnotations)
void	ImportDataTableDirectory.setIgnoreInputDataAnnotations(boolean ignoreInputDataAnnotations)
void	ImportDataTableArchive.setIgnoreInputTextAnnotations(boolean ignoreInputTextAnnotations)
void	ImportDataTableDirectory.setIgnoreInputTextAnnotations(boolean ignoreInputTextAnnotations)
void	ImportDataTableArchive.setInternalPath(String internalPath)
void	AnnotateWithPathProperties.setLastModifiedTime(OptionalTextAnnotationNameParameter lastModifiedTime)
void	ExtractParent.setOrder(int order)
void	ExportDataTableByParameter.setOutputDirectory(Path outputDirectory)
void	ExportDataByParameter.setOutputDirectory(Path outputDirectory)
void	FilterPaths.setOutputFiles(boolean outputFiles)
void	FilterPaths.setOutputFolders(boolean outputFolders)
void	FilterPaths.setOutputNonExisting(boolean outputNonExisting)
void	RelativizeByParameter.setParentPath(Path parentPath) Sets the subfolder
void	AnnotateWithPathProperties.setParentPathAnnotation(OptionalTextAnnotationNameParameter parentPathAnnotation)
void	RenameByString.setPathName(String pathName) Sets the subfolder
void	ListSubfolders.setRecursive(boolean recursive)
void	ListFiles.setRecursive(boolean recursive)
void	ListSubfolders.setRecursiveFollowsLinks(boolean recursiveFollowsLinks)
void	ListFiles.setRecursiveFollowsLinks(boolean recursiveFollowsLinks)
void	ExportDataTableByParameter.setRelativeToProjectDir(boolean relativeToProjectDir)
void	ExportDataByParameter.setRelativeToProjectDir(boolean relativeToProjectDir)
void	SimplePathAnnotationGenerator.setRemoveExtensions(boolean removeExtensions)
void	AnnotateWithPathProperties.setSizeAnnotation(OptionalTextAnnotationNameParameter sizeAnnotation)
void	CopyPath.setSkipExisting(boolean skipExisting)
void	CopyPath.setSkipInvalid(boolean skipInvalid)
void	ExportData.setSplitBySlotName(boolean splitBySlotName)
void	ExportDataByParameter.setSplitBySlotName(boolean splitBySlotName)
void	ListSubfolders.setSubFolder(String subFolder)
void	ListFiles.setSubFolder(String subFolder)
void	ConcatenateByParameter.setSubPath(Path subPath) Sets the subfolder
void	ImportDataTableArchive.setTextAnnotationMergeMode(JIPipeTextAnnotationMergeMode textAnnotationMergeMode)
void	ImportDataTableDirectory.setTextAnnotationMergeMode(JIPipeTextAnnotationMergeMode textAnnotationMergeMode)
void	AnnotateWithPathProperties.setTypeAnnotation(OptionalTextAnnotationNameParameter typeAnnotation)
void	CreateDirectory.setWithParents(boolean withParents) Sets the subfolder

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.filesystem.datasources

Methods in org.hkijena.jipipe.plugins.filesystem.datasources with annotations of type JIPipeParameter

Modifier and Type	Method and Description
String	TemporaryFolderDataSource.getBaseName()
Path	FileDataSource.getFileName()
PathList	FileListDataSource.getFiles()
Path	FolderDataSource.getFolderPath()
PathList	FolderListDataSource.getFolderPaths()
String	ProjectUserFolderDataSource.getKey()
Path	PathDataSource.getPath()
PathIOMode	PathFromUserDataSource.getPathIOMode()
PathList	PathListDataSource.getPaths()
PathType	PathFromUserDataSource.getPathType()
String	TemporaryFileDataSource.getPrefix()
String	TemporaryFileDataSource.getSuffix()
StringList	URIListDataSource.getUriList()
StringList	DownloadFilesDataSource.getUrls()
boolean	PathFromUserDataSource.isMultiple()
boolean	FolderDataSource.isNeedsToExist()
boolean	PathDataSource.isNeedsToExist()
boolean	FileDataSource.isNeedsToExist()
boolean	TemporaryFolderDataSource.isUseScratchDirectory()
void	TemporaryFolderDataSource.setBaseName(String baseName)
void	FileDataSource.setFileName(Path fileName) Sets the file name
void	FileListDataSource.setFiles(PathList files) Sets the file names
void	FolderDataSource.setFolderPath(Path folderPath) Sets the folder path
void	FolderListDataSource.setFolderPaths(PathList folderPaths) Sets the folder path
void	ProjectUserFolderDataSource.setKey(String key)
void	PathFromUserDataSource.setMultiple(boolean multiple)
void	FolderDataSource.setNeedsToExist(boolean needsToExist)
void	PathDataSource.setNeedsToExist(boolean needsToExist)
void	FileDataSource.setNeedsToExist(boolean needsToExist)
void	PathDataSource.setPath(Path path) Sets the file name
void	PathFromUserDataSource.setPathIOMode(PathIOMode pathIOMode)
void	PathListDataSource.setPaths(PathList paths) Sets the folder path
void	PathFromUserDataSource.setPathType(PathType pathType)
void	TemporaryFileDataSource.setPrefix(String prefix)
void	TemporaryFileDataSource.setSuffix(String suffix)
void	URIListDataSource.setUriList(StringList uriList)
void	DownloadFilesDataSource.setUrls(StringList urls)
void	TemporaryFolderDataSource.setUseScratchDirectory(boolean useScratchDirectory)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.forms.algorithms

Methods in org.hkijena.jipipe.plugins.forms.algorithms with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeMergingAlgorithmIterationStepGenerationSettings	IteratingFormProcessorAlgorithm.getDataBatchGenerationSettings()
JIPipeSimpleIteratingAlgorithmIterationStepGenerationSettings	SimpleIteratingFormProcessorAlgorithm.getDataBatchGenerationSettings()
JIPipeMergingAlgorithmIterationStepGenerationSettings	MergingFormProcessorAlgorithm.getDataBatchGenerationSettings()
FormData	SimpleFormGeneratorAlgorithm.getFormData()
String	IteratingFormProcessorAlgorithm.getTabAnnotation()
String	SimpleIteratingFormProcessorAlgorithm.getTabAnnotation()
String	MergingFormProcessorAlgorithm.getTabAnnotation()
boolean	IteratingFormProcessorAlgorithm.isRestoreAnnotations()
void	IteratingFormProcessorAlgorithm.setRestoreAnnotations(boolean restoreAnnotations)
void	IteratingFormProcessorAlgorithm.setTabAnnotation(String tabAnnotation)
void	SimpleIteratingFormProcessorAlgorithm.setTabAnnotation(String tabAnnotation)
void	MergingFormProcessorAlgorithm.setTabAnnotation(String tabAnnotation)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.forms.datatypes

Methods in org.hkijena.jipipe.plugins.forms.datatypes with annotations of type JIPipeParameter

Modifier and Type	Method and Description
SingleAnnotationIOSettings	IntegerFormData.getAnnotationIOSettings()
SingleAnnotationIOSettings	BooleanFormData.getAnnotationIOSettings()
SingleAnnotationIOSettings	PathFormData.getAnnotationIOSettings()
SingleAnnotationIOSettings	EnumFormData.getAnnotationIOSettings()
SingleAnnotationIOSettings	StringFormData.getAnnotationIOSettings()
SingleAnnotationIOSettings	DoubleFormData.getAnnotationIOSettings()
HTMLText	ParameterFormData.getDescription()
StringList	PathFormData.getExtensions()
OptionalStringParameter	BooleanFormData.getFalseString()
PathIOMode	PathFormData.getIoMode()
StringAndStringPairParameter.List	EnumFormData.getItems()
String	ParameterFormData.getName()
PathType	PathFormData.getPathType()
String	FormData.TabSettings.getTab()
OptionalTextAnnotationNameParameter	FormData.TabSettings.getTabAnnotation()
FormData.TabSettings	FormData.getTabSettings()
OptionalStringParameter	BooleanFormData.getTrueString()
JIPipeExpressionParameter	IntegerFormData.getValidationExpression()
StringQueryExpression	PathFormData.getValidationExpression()
StringQueryExpression	StringFormData.getValidationExpression()
JIPipeExpressionParameter	DoubleFormData.getValidationExpression()
int	IntegerFormData.getValue()
boolean	BooleanFormData.getValue()
Path	PathFormData.getValue()
String	EnumFormData.getValue()
String	StringFormData.getValue()
double	DoubleFormData.getValue()
boolean	ParameterFormData.isShowName()
void	ParameterFormData.setDescription(HTMLText description)
void	PathFormData.setExtensions(StringList extensions)
void	BooleanFormData.setFalseString(OptionalStringParameter falseString)
void	PathFormData.setIoMode(PathIOMode ioMode)
void	EnumFormData.setItems(StringAndStringPairParameter.List items)
void	ParameterFormData.setName(String name)
void	PathFormData.setPathType(PathType pathType)
void	ParameterFormData.setShowName(boolean showName)
void	FormData.TabSettings.setTab(String tab)
void	FormData.TabSettings.setTabAnnotation(OptionalTextAnnotationNameParameter tabAnnotation)
void	BooleanFormData.setTrueString(OptionalStringParameter trueString)
void	IntegerFormData.setValidationExpression(JIPipeExpressionParameter validationExpression)
void	DoubleFormData.setValidationExpression(JIPipeExpressionParameter validationExpression)
void	PathFormData.setValidationExpression(StringQueryExpression validationExpression)
void	StringFormData.setValidationExpression(StringQueryExpression validationExpression)
void	BooleanFormData.setValue(boolean value)
void	DoubleFormData.setValue(double value)
void	IntegerFormData.setValue(int value)
void	PathFormData.setValue(Path value)
void	EnumFormData.setValue(String value)
void	StringFormData.setValue(String value)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.forms.utils

Methods in org.hkijena.jipipe.plugins.forms.utils with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeTextAnnotationMergeMode	SingleAnnotationIOSettings.getAnnotationMergeStrategy()
OptionalTextAnnotationNameParameter	SingleAnnotationIOSettings.getInputAnnotation()
OptionalTextAnnotationNameParameter	SingleAnnotationIOSettings.getOutputAnnotation()
void	SingleAnnotationIOSettings.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	SingleAnnotationIOSettings.setInputAnnotation(OptionalTextAnnotationNameParameter inputAnnotation)
void	SingleAnnotationIOSettings.setOutputAnnotation(OptionalTextAnnotationNameParameter outputAnnotation)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.graphannotation.nodes

Methods in org.hkijena.jipipe.plugins.graphannotation.nodes with annotations of type JIPipeParameter

Modifier and Type	Method and Description
Anchor	AbstractTextBoxAnnotationGraphNode.TextLocationParameters.getAnchor()
Anchor	ImageBoxAnnotationGraphNode.ImageParameters.getAnchor()
int	ArrowAnnotationGraphNode.getAngle()
int	ArrowAnnotationGraphNode.getArrowSize()
OptionalColorParameter	ImageBoxAnnotationGraphNode.ImageParameters.getBackgroundColor()
Color	ImageBoxAnnotationGraphNode.ImageParameters.getBorderColor()
Color	TextBoxAnnotationGraphNode.ShapeParameters.getBorderColor()
int	ImageBoxAnnotationGraphNode.ImageParameters.getBorderThickness()
int	TextBoxAnnotationGraphNode.ShapeParameters.getBorderThickness()
Color	AbstractTextBoxAnnotationGraphNode.TextRenderParameters.getColor()
Color	ArrowAnnotationGraphNode.getColor()
AbstractTextBoxAnnotationGraphNode.TextRenderParameters	AbstractTextBoxAnnotationGraphNode.getContentStyle()
OptionalColorParameter	TextBoxAnnotationGraphNode.ShapeParameters.getFillColor()
SizeFitMode	ImageBoxAnnotationGraphNode.ImageParameters.getFitMode()
FontFamilyParameter	AbstractTextBoxAnnotationGraphNode.TextRenderParameters.getFontFamily()
int	AbstractTextBoxAnnotationGraphNode.TextRenderParameters.getFontSize()
FontStyleParameter	AbstractTextBoxAnnotationGraphNode.TextRenderParameters.getFontStyle()
ImageParameter	ImageBoxAnnotationGraphNode.ImageParameters.getImage()
ImageBoxAnnotationGraphNode.ImageParameters	ImageBoxAnnotationGraphNode.getImageParameters()
int	ArrowAnnotationGraphNode.getLineThickness()
int	AbstractTextBoxAnnotationGraphNode.TextLocationParameters.getMarginBottom()
int	ImageBoxAnnotationGraphNode.ImageParameters.getMarginBottom()
int	AbstractTextBoxAnnotationGraphNode.TextLocationParameters.getMarginLeft()
int	ImageBoxAnnotationGraphNode.ImageParameters.getMarginLeft()
int	AbstractTextBoxAnnotationGraphNode.TextLocationParameters.getMarginRight()
int	ImageBoxAnnotationGraphNode.ImageParameters.getMarginRight()
int	AbstractTextBoxAnnotationGraphNode.TextLocationParameters.getMarginTop()
int	ImageBoxAnnotationGraphNode.ImageParameters.getMarginTop()
double	ImageBoxAnnotationGraphNode.ImageParameters.getScaleX()
double	ImageBoxAnnotationGraphNode.ImageParameters.getScaleY()
TextBoxAnnotationGraphNode.ShapeParameters	TextBoxAnnotationGraphNode.getShapeParameters()
String	AbstractTextBoxAnnotationGraphNode.getTextContent()
AbstractTextBoxAnnotationGraphNode.TextLocationParameters	AbstractTextBoxAnnotationGraphNode.getTextLocation()
String	AbstractTextBoxAnnotationGraphNode.getTextTitle()
AbstractTextBoxAnnotationGraphNode.TextRenderParameters	AbstractTextBoxAnnotationGraphNode.getTitleStyle()
void	AbstractTextBoxAnnotationGraphNode.TextLocationParameters.setAnchor(Anchor anchor)
void	ImageBoxAnnotationGraphNode.ImageParameters.setAnchor(Anchor anchor)
void	ArrowAnnotationGraphNode.setAngle(int angle)
void	ArrowAnnotationGraphNode.setArrowSize(int arrowSize)
void	ImageBoxAnnotationGraphNode.ImageParameters.setBackgroundColor(OptionalColorParameter backgroundColor)
void	ImageBoxAnnotationGraphNode.ImageParameters.setBorderColor(Color borderColor)
void	TextBoxAnnotationGraphNode.ShapeParameters.setBorderColor(Color borderColor)
void	ImageBoxAnnotationGraphNode.ImageParameters.setBorderThickness(int borderThickness)
void	TextBoxAnnotationGraphNode.ShapeParameters.setBorderThickness(int borderThickness)
void	AbstractTextBoxAnnotationGraphNode.TextRenderParameters.setColor(Color color)
void	ArrowAnnotationGraphNode.setColor(Color color)
void	TextBoxAnnotationGraphNode.ShapeParameters.setFillColor(OptionalColorParameter fillColor)
void	ImageBoxAnnotationGraphNode.ImageParameters.setFitMode(SizeFitMode fitMode)
void	AbstractTextBoxAnnotationGraphNode.TextRenderParameters.setFontFamily(FontFamilyParameter fontFamily)
void	AbstractTextBoxAnnotationGraphNode.TextRenderParameters.setFontSize(int fontSize)
void	AbstractTextBoxAnnotationGraphNode.TextRenderParameters.setFontStyle(FontStyleParameter fontStyle)
void	ImageBoxAnnotationGraphNode.ImageParameters.setImage(ImageParameter image)
void	ArrowAnnotationGraphNode.setLineThickness(int lineThickness)
void	AbstractTextBoxAnnotationGraphNode.TextLocationParameters.setMarginBottom(int marginBottom)
void	ImageBoxAnnotationGraphNode.ImageParameters.setMarginBottom(int marginBottom)
void	AbstractTextBoxAnnotationGraphNode.TextLocationParameters.setMarginLeft(int marginLeft)
void	ImageBoxAnnotationGraphNode.ImageParameters.setMarginLeft(int marginLeft)
void	AbstractTextBoxAnnotationGraphNode.TextLocationParameters.setMarginRight(int marginRight)
void	ImageBoxAnnotationGraphNode.ImageParameters.setMarginRight(int marginRight)
void	AbstractTextBoxAnnotationGraphNode.TextLocationParameters.setMarginTop(int marginTop)
void	ImageBoxAnnotationGraphNode.ImageParameters.setMarginTop(int marginTop)
void	ImageBoxAnnotationGraphNode.ImageParameters.setScaleX(double scaleX)
void	ImageBoxAnnotationGraphNode.ImageParameters.setScaleY(double scaleY)
void	AbstractTextBoxAnnotationGraphNode.setTextContent(String textContent)
void	AbstractTextBoxAnnotationGraphNode.setTextTitle(String textTitle)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ij3d.imageviewer

Methods in org.hkijena.jipipe.plugins.ij3d.imageviewer with annotations of type JIPipeParameter

Modifier and Type	Method and Description
ROI3DMeasurementSetParameter	Measurement3DSettings.getStatistics()
boolean	Measurement3DSettings.isMeasureInPhysicalUnits()
boolean	ImageViewerUIROI3DDisplayApplicationSettings.isRenderROIAsVolume()
boolean	ImageViewerUIROI3DDisplayApplicationSettings.isShowROI()
void	Measurement3DSettings.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	ImageViewerUIROI3DDisplayApplicationSettings.setRenderROIAsVolume(boolean renderROIAsVolume)
void	ImageViewerUIROI3DDisplayApplicationSettings.setShowROI(boolean showROI)
void	Measurement3DSettings.setStatistics(ROI3DMeasurementSetParameter statistics)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ij3d.nodes.binary

Methods in org.hkijena.jipipe.plugins.ij3d.nodes.binary with annotations of type JIPipeParameter

Modifier and Type	Method and Description
float	Voronoi3DAlgorithm.getMaxRadius()
int	Watershed3DSplittingAlgorithm.getRadius()
int	ErodedVolumeFraction3DAlgorithm.getThreshold()
int	DistanceMap3DAlgorithm.getThreshold()
boolean	ErodedVolumeFraction3DAlgorithm.isInverse()
boolean	DistanceMap3DAlgorithm.isInverse()
void	ErodedVolumeFraction3DAlgorithm.setInverse(boolean inverse)
void	DistanceMap3DAlgorithm.setInverse(boolean inverse)
void	Voronoi3DAlgorithm.setMaxRadius(float maxRadius)
void	Watershed3DSplittingAlgorithm.setRadius(int radius)
void	ErodedVolumeFraction3DAlgorithm.setThreshold(int threshold)
void	DistanceMap3DAlgorithm.setThreshold(int threshold)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ij3d.nodes.features

Methods in org.hkijena.jipipe.plugins.ij3d.nodes.features with annotations of type JIPipeParameter

Modifier and Type	Method and Description
double	EdgeFilter3DAlgorithm.getAlpha()
double	SymmetryFilter3DAlgorithm.getAlpha()
float	FindMaxima3DAlgorithm.getMinThreshold()
float	FindMaxima3DAlgorithm.getNoise()
double	SymmetryFilter3DAlgorithm.getNormalize()
int	SymmetryFilter3DAlgorithm.getRadius()
float	FindMaxima3DAlgorithm.getRadiusXY()
float	FindMaxima3DAlgorithm.getRadiusZ()
double	SymmetryFilter3DAlgorithm.getScaling()
boolean	SymmetryFilter3DAlgorithm.isImproved()
void	EdgeFilter3DAlgorithm.setAlpha(double alpha)
void	SymmetryFilter3DAlgorithm.setAlpha(double alpha)
void	SymmetryFilter3DAlgorithm.setImproved(boolean improved)
void	FindMaxima3DAlgorithm.setMinThreshold(float minThreshold)
void	FindMaxima3DAlgorithm.setNoise(float noise)
void	SymmetryFilter3DAlgorithm.setNormalize(double normalize)
void	SymmetryFilter3DAlgorithm.setRadius(int radius)
void	FindMaxima3DAlgorithm.setRadiusXY(float radiusXY)
void	FindMaxima3DAlgorithm.setRadiusZ(float radiusZ)
void	SymmetryFilter3DAlgorithm.setScaling(double scaling)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ij3d.nodes.filters

Methods in org.hkijena.jipipe.plugins.ij3d.nodes.filters with annotations of type JIPipeParameter

Modifier and Type	Method and Description
Quantity	Fast3DFiltersAlgorithm.getKernelX()
Quantity	Fast3DFiltersAlgorithm.getKernelY()
Quantity	Fast3DFiltersAlgorithm.getKernelZ()
int	Fast3DFiltersAlgorithm.getNumThreads()
boolean	Fast3DFiltersAlgorithm.isPreferIsotropicFilter()
void	Fast3DFiltersAlgorithm.setKernelX(Quantity kernelX)
void	Fast3DFiltersAlgorithm.setKernelY(Quantity kernelY)
void	Fast3DFiltersAlgorithm.setKernelZ(Quantity kernelZ)
void	Fast3DFiltersAlgorithm.setNumThreads(int numThreads)
void	Fast3DFiltersAlgorithm.setPreferIsotropicFilter(boolean preferIsotropicFilter)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ij3d.nodes.overlay

Methods in org.hkijena.jipipe.plugins.ij3d.nodes.overlay with annotations of type JIPipeParameter

Modifier and Type	Method and Description
Roi3DDrawer	RenderOverlay3DAlgorithm.getDrawer()

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d

Methods in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeDataByMetadataExporter	ExportROI3DAlgorithm.getExporter() Deprecated.
DataExportExpressionParameter	ExportROI3DAlgorithm2.getFilePath()
Path	ExportROI3DAlgorithm.getOutputDirectory() Deprecated.
boolean	ExportROI3DAlgorithm.isRelativeToProjectDir() Deprecated.
void	ExportROI3DAlgorithm2.setFilePath(DataExportExpressionParameter filePath)
void	ExportROI3DAlgorithm.setOutputDirectory(Path outputDirectory) Deprecated.
void	ExportROI3DAlgorithm.setRelativeToProjectDir(boolean relativeToProjectDir) Deprecated.

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.convert

Methods in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.convert with annotations of type JIPipeParameter

Modifier and Type	Method and Description
Roi3DDrawer	Roi3DToRGBAlgorithm.getDrawer()
Quantity.LengthUnit	Roi3DTo3DMeshAlgorithm.getMeshLengthUnit()
String	Roi3DTo3DMeshAlgorithm.getMeshNamePrefix()
Neighborhood3D	Roi2DToRoi3DConverterAlgorithm.getNeighborhood()
OptionalColorParameter	Roi3DTo3DMeshAlgorithm.getOverrideMeshColor()
boolean	Roi2DToRoi3DConverterAlgorithm.isFast()
boolean	Roi2DToRoi3DConverterAlgorithm.isForce2D()
boolean	Roi3DTo3DMeshAlgorithm.isForceMeshLengthUnit()
boolean	Roi3DTo3DMeshAlgorithm.isPhysicalSizes()
boolean	Roi3DTo3DMeshAlgorithm.isSmooth()
void	Roi2DToRoi3DConverterAlgorithm.setFast(boolean fast)
void	Roi2DToRoi3DConverterAlgorithm.setForce2D(boolean force2D)
void	Roi3DTo3DMeshAlgorithm.setForceMeshLengthUnit(boolean forceMeshLengthUnit)
void	Roi3DTo3DMeshAlgorithm.setMeshLengthUnit(Quantity.LengthUnit meshLengthUnit)
void	Roi3DTo3DMeshAlgorithm.setMeshNamePrefix(String meshNamePrefix)
void	Roi2DToRoi3DConverterAlgorithm.setNeighborhood(Neighborhood3D neighborhood)
void	Roi3DTo3DMeshAlgorithm.setOverrideMeshColor(OptionalColorParameter overrideMeshColor)
void	Roi3DTo3DMeshAlgorithm.setPhysicalSizes(boolean physicalSizes)
void	Roi3DTo3DMeshAlgorithm.setSmooth(boolean smooth)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.filter

Methods in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.filter with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeExpressionParameter	FilterRoi3DListsAlgorithm.getFilter()
JIPipeExpressionParameter	FilterRoi3DByStatisticsAlgorithm.getFilters()
ROI3DMeasurementSetParameter	FilterRoi3DByStatisticsAlgorithm.getMeasurements()
JIPipeExpressionParameter	FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.getOverlapFilter()
ROI3DRelationMeasurementSetParameter	FilterRoi3DByOverlapAlgorithm.getOverlapFilterMeasurements()
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings	FilterRoi3DByOverlapAlgorithm.getRoi1Settings()
FilterRoi3DByOverlapAlgorithm.ROIFilterSettings	FilterRoi3DByOverlapAlgorithm.getRoi2Settings()
boolean	FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.isConsumeOnOverlap()
boolean	FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.isEnabled()
boolean	FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.isIgnoreC()
boolean	FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.isIgnoreT()
boolean	FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.isInvert()
boolean	FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.isMeasureInPhysicalUnits()
boolean	FilterRoi3DByStatisticsAlgorithm.isMeasureInPhysicalUnits()
boolean	FilterRoi3DByStatisticsAlgorithm.isOutputEmptyLists()
boolean	FilterRoi3DListsAlgorithm.isOutputEmptyLists()
boolean	FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.isOutputOverlaps()
boolean	FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.isPreciseColocalization()
boolean	FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.isRequireColocalization()
void	FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.setConsumeOnOverlap(boolean consumeOnOverlap)
void	FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.setEnabled(boolean enabled)
void	FilterRoi3DListsAlgorithm.setFilter(JIPipeExpressionParameter filter)
void	FilterRoi3DByStatisticsAlgorithm.setFilters(JIPipeExpressionParameter filters)
void	FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.setIgnoreC(boolean ignoreC)
void	FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.setIgnoreT(boolean ignoreT)
void	FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.setInvert(boolean invert)
void	FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	FilterRoi3DByStatisticsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	FilterRoi3DByStatisticsAlgorithm.setMeasurements(ROI3DMeasurementSetParameter measurements)
void	FilterRoi3DByStatisticsAlgorithm.setOutputEmptyLists(boolean outputEmptyLists)
void	FilterRoi3DListsAlgorithm.setOutputEmptyLists(boolean outputEmptyLists)
void	FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.setOutputOverlaps(boolean outputOverlaps)
void	FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.setOverlapFilter(JIPipeExpressionParameter overlapFilter)
void	FilterRoi3DByOverlapAlgorithm.setOverlapFilterMeasurements(ROI3DRelationMeasurementSetParameter overlapFilterMeasurements)
void	FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.setPreciseColocalization(boolean preciseColocalization)
void	FilterRoi3DByOverlapAlgorithm.ROIFilterSettings.setRequireColocalization(boolean requireColocalization)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.generate

Methods in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.generate with annotations of type JIPipeParameter

Modifier and Type	Method and Description
double	FindParticles3DAlgorithm.getMaxParticleSize()
double	Roi3DFromLabelsAlgorithm.getMaxParticleSize()
double	FindParticles3DAlgorithm.getMaxParticleSphericity()
double	Roi3DFromLabelsAlgorithm.getMaxParticleSphericity()
double	FindParticles3DAlgorithm.getMinParticleSize()
double	Roi3DFromLabelsAlgorithm.getMinParticleSize()
double	FindParticles3DAlgorithm.getMinParticleSphericity()
double	Roi3DFromLabelsAlgorithm.getMinParticleSphericity()
Neighborhood3D	FindParticles3DAlgorithm.getNeighborhood()
boolean	FindParticles3DAlgorithm.isBlackBackground()
boolean	FindParticles3DAlgorithm.isExcludeEdges()
boolean	Roi3DFromLabelsAlgorithm.isExcludeEdges()
boolean	FindParticles3DAlgorithm.isMeasureInPhysicalUnits()
boolean	Roi3DFromLabelsAlgorithm.isMeasureInPhysicalUnits()
void	FindParticles3DAlgorithm.setBlackBackground(boolean blackBackground)
void	FindParticles3DAlgorithm.setExcludeEdges(boolean excludeEdges)
void	Roi3DFromLabelsAlgorithm.setExcludeEdges(boolean excludeEdges)
void	FindParticles3DAlgorithm.setMaxParticleSize(double maxParticleSize)
void	Roi3DFromLabelsAlgorithm.setMaxParticleSize(double maxParticleSize)
boolean	FindParticles3DAlgorithm.setMaxParticleSphericity(double maxParticleSphericity)
boolean	Roi3DFromLabelsAlgorithm.setMaxParticleSphericity(double maxParticleSphericity)
void	FindParticles3DAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	Roi3DFromLabelsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	FindParticles3DAlgorithm.setMinParticleSize(double minParticleSize)
void	Roi3DFromLabelsAlgorithm.setMinParticleSize(double minParticleSize)
boolean	FindParticles3DAlgorithm.setMinParticleSphericity(double minParticleSphericity)
boolean	Roi3DFromLabelsAlgorithm.setMinParticleSphericity(double minParticleSphericity)
void	FindParticles3DAlgorithm.setNeighborhood(Neighborhood3D neighborhood)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.measure

Methods in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.measure with annotations of type JIPipeParameter

Modifier and Type	Method and Description
ROI3DRelationMeasurementSetParameter	ExtractRoi3DRelationStatisticsAlgorithm.getMeasurements()
ROI3DMeasurementSetParameter	ExtractRoi3DStatisticsAlgorithm.getMeasurements()
boolean	ExtractRoi3DRelationStatisticsAlgorithm.isIgnoreC()
boolean	ExtractRoi3DRelationStatisticsAlgorithm.isIgnoreT()
boolean	ExtractRoi3DRelationStatisticsAlgorithm.isMeasureInPhysicalUnits()
boolean	ExtractRoi3DStatisticsAlgorithm.isMeasureInPhysicalUnits()
boolean	ExtractRoi3DRelationStatisticsAlgorithm.isPreciseColocalization()
boolean	ExtractRoi3DRelationStatisticsAlgorithm.isRequireColocalization()
void	ExtractRoi3DRelationStatisticsAlgorithm.setIgnoreC(boolean ignoreC)
void	ExtractRoi3DRelationStatisticsAlgorithm.setIgnoreT(boolean ignoreT)
void	ExtractRoi3DRelationStatisticsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	ExtractRoi3DStatisticsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	ExtractRoi3DStatisticsAlgorithm.setMeasurements(ROI3DMeasurementSetParameter measurements)
void	ExtractRoi3DRelationStatisticsAlgorithm.setMeasurements(ROI3DRelationMeasurementSetParameter measurements)
void	ExtractRoi3DRelationStatisticsAlgorithm.setPreciseColocalization(boolean preciseColocalization)
void	ExtractRoi3DRelationStatisticsAlgorithm.setRequireColocalization(boolean requireColocalization)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.metadata

Methods in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.metadata with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeExpressionParameter	RemoveROI3DMetadataAlgorithm.getFilterExpression()
OptionalStringParameter	ExtractROI3DMetadataAlgorithm.getIndexColumn()
OptionalStringParameter	ExtractROI3DMetadataAlgorithm.getNameColumn()
TableColumnSourceExpressionParameter	SetROI3DMetadataFromTableAlgorithm.getRoiIndexColumn()
boolean	SetROI3DMetadataFromTableAlgorithm.isClearBeforeWrite()
boolean	SetROI3DMetadataFromTableAlgorithm.isIgnoreMissingRoiIndices()
void	SetROI3DMetadataFromTableAlgorithm.setClearBeforeWrite(boolean clearBeforeWrite)
void	RemoveROI3DMetadataAlgorithm.setFilterExpression(JIPipeExpressionParameter filterExpression)
void	SetROI3DMetadataFromTableAlgorithm.setIgnoreMissingRoiIndices(boolean ignoreMissingRoiIndices)
void	ExtractROI3DMetadataAlgorithm.setIndexColumn(OptionalStringParameter indexColumn)
void	ExtractROI3DMetadataAlgorithm.setNameColumn(OptionalStringParameter nameColumn)
void	SetROI3DMetadataFromTableAlgorithm.setRoiIndexColumn(TableColumnSourceExpressionParameter roiIndexColumn)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.modify

Methods in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.modify with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalJIPipeExpressionParameter	ChangeRoi3DPropertiesFromTableAlgorithm.getCenterX()
OptionalJIPipeExpressionParameter	ChangeRoi3DPropertiesFromExpressionsAlgorithm.getCenterX()
OptionalDoubleParameter	ChangeRoi3DPropertiesAlgorithm.getCenterX()
OptionalJIPipeExpressionParameter	ChangeRoi3DPropertiesFromTableAlgorithm.getCenterY()
OptionalJIPipeExpressionParameter	ChangeRoi3DPropertiesFromExpressionsAlgorithm.getCenterY()
OptionalDoubleParameter	ChangeRoi3DPropertiesAlgorithm.getCenterY()
OptionalJIPipeExpressionParameter	ChangeRoi3DPropertiesFromTableAlgorithm.getCenterZ()
OptionalJIPipeExpressionParameter	ChangeRoi3DPropertiesFromExpressionsAlgorithm.getCenterZ()
OptionalDoubleParameter	ChangeRoi3DPropertiesAlgorithm.getCenterZ()
OptionalJIPipeExpressionParameter	ChangeRoi3DPropertiesFromTableAlgorithm.getChannelLocation()
OptionalJIPipeExpressionParameter	ChangeRoi3DPropertiesFromExpressionsAlgorithm.getChannelLocation()
OptionalIntegerParameter	ChangeRoi3DPropertiesAlgorithm.getChannelLocation()
OptionalJIPipeExpressionParameter	ChangeRoi3DPropertiesFromTableAlgorithm.getFillColor()
OptionalJIPipeExpressionParameter	ChangeRoi3DPropertiesFromExpressionsAlgorithm.getFillColor()
OptionalColorParameter	ChangeRoi3DPropertiesAlgorithm.getFillColor()
ROI3DMeasurementColumn	ColorRoi3DByStatisticsAlgorithm.getFillMeasurement()
OptionalJIPipeExpressionParameter	ChangeRoi3DPropertiesFromTableAlgorithm.getFrameLocation()
OptionalJIPipeExpressionParameter	ChangeRoi3DPropertiesFromExpressionsAlgorithm.getFrameLocation()
OptionalIntegerParameter	ChangeRoi3DPropertiesAlgorithm.getFrameLocation()
OptionalColorMapParameter	ColorRoi3DByStatisticsAlgorithm.getMapFillColor()
OptionalColorMapParameter	ColorRoi3DByNameAlgorithm.getMapFillColor()
ROI3DMeasurementSetParameter	ChangeRoi3DPropertiesFromExpressionsAlgorithm.getMeasurements()
ParameterCollectionList	ChangeRoi3DPropertiesFromTableAlgorithm.getMetadataEntries()
ParameterCollectionList	ChangeRoi3DPropertiesFromExpressionsAlgorithm.getMetadataEntries()
String	ChangeRoi3DPropertiesFromTableAlgorithm.MetadataEntry.getMetadataName()
String	ChangeRoi3DPropertiesFromExpressionsAlgorithm.MetadataEntry.getMetadataName()
OptionalJIPipeExpressionParameter	ChangeRoi3DPropertiesFromTableAlgorithm.MetadataEntry.getMetadataValue()
OptionalJIPipeExpressionParameter	ChangeRoi3DPropertiesFromExpressionsAlgorithm.MetadataEntry.getMetadataValue()
LogicalOperation	ROI3DCalculatorAlgorithm.getOperation()
OptionalJIPipeExpressionParameter	ChangeRoi3DPropertiesFromTableAlgorithm.getRoiComment()
OptionalJIPipeExpressionParameter	ChangeRoi3DPropertiesFromExpressionsAlgorithm.getRoiComment()
OptionalStringParameter	ChangeRoi3DPropertiesAlgorithm.getRoiComment()
OptionalJIPipeExpressionParameter	ChangeRoi3DPropertiesFromTableAlgorithm.getRoiName()
OptionalJIPipeExpressionParameter	ChangeRoi3DPropertiesFromExpressionsAlgorithm.getRoiName()
OptionalStringParameter	ChangeRoi3DPropertiesAlgorithm.getRoiName()
JIPipeExpressionParameter	ChangeRoi3DPropertiesFromTableAlgorithm.getRowSelector()
boolean	ChangeRoi3DPropertiesFromExpressionsAlgorithm.isMeasureInPhysicalUnits()
boolean	ColorRoi3DByStatisticsAlgorithm.isMeasureInPhysicalUnits()
void	ChangeRoi3DPropertiesAlgorithm.setCenterX(OptionalDoubleParameter centerX)
void	ChangeRoi3DPropertiesFromTableAlgorithm.setCenterX(OptionalJIPipeExpressionParameter centerX)
void	ChangeRoi3DPropertiesFromExpressionsAlgorithm.setCenterX(OptionalJIPipeExpressionParameter centerX)
void	ChangeRoi3DPropertiesAlgorithm.setCenterY(OptionalDoubleParameter centerY)
void	ChangeRoi3DPropertiesFromTableAlgorithm.setCenterY(OptionalJIPipeExpressionParameter centerY)
void	ChangeRoi3DPropertiesFromExpressionsAlgorithm.setCenterY(OptionalJIPipeExpressionParameter centerY)
void	ChangeRoi3DPropertiesAlgorithm.setCenterZ(OptionalDoubleParameter centerZ)
void	ChangeRoi3DPropertiesFromTableAlgorithm.setCenterZ(OptionalJIPipeExpressionParameter centerZ)
void	ChangeRoi3DPropertiesFromExpressionsAlgorithm.setCenterZ(OptionalJIPipeExpressionParameter centerZ)
void	ChangeRoi3DPropertiesAlgorithm.setChannelLocation(OptionalIntegerParameter channelLocation)
void	ChangeRoi3DPropertiesFromTableAlgorithm.setChannelLocation(OptionalJIPipeExpressionParameter channelLocation)
void	ChangeRoi3DPropertiesFromExpressionsAlgorithm.setChannelLocation(OptionalJIPipeExpressionParameter channelLocation)
void	ChangeRoi3DPropertiesAlgorithm.setFillColor(OptionalColorParameter fillColor)
void	ChangeRoi3DPropertiesFromTableAlgorithm.setFillColor(OptionalJIPipeExpressionParameter fillColor)
void	ChangeRoi3DPropertiesFromExpressionsAlgorithm.setFillColor(OptionalJIPipeExpressionParameter fillColor)
void	ColorRoi3DByStatisticsAlgorithm.setFillMeasurement(ROI3DMeasurementColumn fillMeasurement)
void	ChangeRoi3DPropertiesAlgorithm.setFrameLocation(OptionalIntegerParameter frameLocation)
void	ChangeRoi3DPropertiesFromTableAlgorithm.setFrameLocation(OptionalJIPipeExpressionParameter frameLocation)
void	ChangeRoi3DPropertiesFromExpressionsAlgorithm.setFrameLocation(OptionalJIPipeExpressionParameter frameLocation)
void	ColorRoi3DByStatisticsAlgorithm.setMapFillColor(OptionalColorMapParameter mapFillColor)
void	ColorRoi3DByNameAlgorithm.setMapFillColor(OptionalColorMapParameter mapFillColor)
void	ChangeRoi3DPropertiesFromExpressionsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	ColorRoi3DByStatisticsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	ChangeRoi3DPropertiesFromExpressionsAlgorithm.setMeasurements(ROI3DMeasurementSetParameter measurements)
void	ChangeRoi3DPropertiesFromTableAlgorithm.setMetadataEntries(ParameterCollectionList metadataEntries)
void	ChangeRoi3DPropertiesFromExpressionsAlgorithm.setMetadataEntries(ParameterCollectionList metadataEntries)
void	ChangeRoi3DPropertiesFromTableAlgorithm.MetadataEntry.setMetadataName(String metadataName)
void	ChangeRoi3DPropertiesFromExpressionsAlgorithm.MetadataEntry.setMetadataName(String metadataName)
void	ChangeRoi3DPropertiesFromTableAlgorithm.MetadataEntry.setMetadataValue(OptionalJIPipeExpressionParameter metadataValue)
void	ChangeRoi3DPropertiesFromExpressionsAlgorithm.MetadataEntry.setMetadataValue(OptionalJIPipeExpressionParameter metadataValue)
void	ROI3DCalculatorAlgorithm.setOperation(LogicalOperation operation)
void	ChangeRoi3DPropertiesFromTableAlgorithm.setRoiComment(OptionalJIPipeExpressionParameter roiComment)
void	ChangeRoi3DPropertiesFromExpressionsAlgorithm.setRoiComment(OptionalJIPipeExpressionParameter roiComment)
void	ChangeRoi3DPropertiesAlgorithm.setRoiComment(OptionalStringParameter roiComment)
void	ChangeRoi3DPropertiesFromTableAlgorithm.setRoiName(OptionalJIPipeExpressionParameter roiName)
void	ChangeRoi3DPropertiesFromExpressionsAlgorithm.setRoiName(OptionalJIPipeExpressionParameter roiName)
void	ChangeRoi3DPropertiesAlgorithm.setRoiName(OptionalStringParameter roiName)
void	ChangeRoi3DPropertiesFromTableAlgorithm.setRowSelector(JIPipeExpressionParameter rowSelector)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.process

Methods in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.process with annotations of type JIPipeParameter

Modifier and Type	Method and Description
double	RemoveBorderRoi3DAlgorithm.getBorderDistance()
ROI3DOutline	OutlineRoi3DAlgorithm.getOutline()
boolean	OutlineRoi3DAlgorithm.isIgnoreErrors()
boolean	RemoveBorderRoi3DAlgorithm.isRemoveInX()
boolean	RemoveBorderRoi3DAlgorithm.isRemoveInY()
boolean	RemoveBorderRoi3DAlgorithm.isRemoveInZ()
void	RemoveBorderRoi3DAlgorithm.setBorderDistance(double borderDistance)
void	OutlineRoi3DAlgorithm.setIgnoreErrors(boolean ignoreErrors)
void	OutlineRoi3DAlgorithm.setOutline(ROI3DOutline outline)
void	RemoveBorderRoi3DAlgorithm.setRemoveInX(boolean removeInX)
void	RemoveBorderRoi3DAlgorithm.setRemoveInY(boolean removeInY)
void	RemoveBorderRoi3DAlgorithm.setRemoveInZ(boolean removeInZ)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.split

Methods in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d.split with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeExpressionParameter	ExplodeRoi3DListAlgorithm.getAnnotationValue()
OptionalTextAnnotationNameParameter	SplitRoi3DIntoConnectedComponentsAlgorithm.getComponentNameAnnotation()
OptionalStringParameter	ExplodeRoi3DListAlgorithm.getGeneratedAnnotation()
JIPipeExpressionParameter	SplitRoi3DIntoConnectedComponentsAlgorithm.getOverlapFilter()
ROI3DRelationMeasurementSetParameter	SplitRoi3DIntoConnectedComponentsAlgorithm.getOverlapFilterMeasurements()
boolean	SplitRoi3DIntoConnectedComponentsAlgorithm.isIgnoreC()
boolean	SplitRoi3DIntoConnectedComponentsAlgorithm.isIgnoreT()
boolean	SplitRoi3DIntoConnectedComponentsAlgorithm.isMeasureInPhysicalUnits()
boolean	SplitRoi3DIntoConnectedComponentsAlgorithm.isPreciseColocalization()
boolean	SplitRoi3DIntoConnectedComponentsAlgorithm.isRequireColocalization()
void	ExplodeRoi3DListAlgorithm.setAnnotationValue(JIPipeExpressionParameter annotationValue)
void	SplitRoi3DIntoConnectedComponentsAlgorithm.setComponentNameAnnotation(OptionalTextAnnotationNameParameter componentNameAnnotation)
void	ExplodeRoi3DListAlgorithm.setGeneratedAnnotation(OptionalStringParameter generatedAnnotation)
void	SplitRoi3DIntoConnectedComponentsAlgorithm.setIgnoreC(boolean ignoreC)
void	SplitRoi3DIntoConnectedComponentsAlgorithm.setIgnoreT(boolean ignoreT)
void	SplitRoi3DIntoConnectedComponentsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	SplitRoi3DIntoConnectedComponentsAlgorithm.setOverlapFilter(JIPipeExpressionParameter overlapFilter)
void	SplitRoi3DIntoConnectedComponentsAlgorithm.setOverlapFilterMeasurements(ROI3DRelationMeasurementSetParameter overlapFilterMeasurements)
void	SplitRoi3DIntoConnectedComponentsAlgorithm.setPreciseColocalization(boolean preciseColocalization)
void	SplitRoi3DIntoConnectedComponentsAlgorithm.setRequireColocalization(boolean requireColocalization)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ij3d.nodes.segmentation

Methods in org.hkijena.jipipe.plugins.ij3d.nodes.segmentation with annotations of type JIPipeParameter

Modifier and Type	Method and Description
ij.process.AutoThresholder.Method	NucleiSegmentation3DAlgorithm.getAutoThresholdMethod()
IterativeThreshold3DAlgorithm.CriteriaMethod	IterativeThreshold3DAlgorithm.getCriteriaMethod()
OptionalIntegerParameter	NucleiSegmentation3DAlgorithm.getCustomThreshold()
float	DifferenceSpotSegmentation3DAlgorithm.getDifference()
double	GaussianFitSpotSegmentation3DAlgorithm.getGaussPC()
float	HysteresisSegmentation3DAlgorithm.getHighThreshold()
int	ConstantSpotSegmentation3DAlgorithm.getLocalBackground()
float	HysteresisSegmentation3DAlgorithm.getLowThreshold()
int	GaussianFitSpotSegmentation3DAlgorithm.getMaxRadius()
int	IterativeThreshold3DAlgorithm.getMaxVolumePixels()
int	SpotSegmentation3DAlgorithm.getMaxVolumePixels()
int	IterativeThreshold3DAlgorithm.getMinContrastExp()
int	IterativeThreshold3DAlgorithm.getMinThreshold()
int	IterativeThreshold3DAlgorithm.getMinVolumePixels()
int	SpotSegmentation3DAlgorithm.getMinVolumePixels()
float	SeedSegmentationSettings.getRadius()
float	LocalMeanSpotSegmentation3DAlgorithm.getRadius0()
float	LocalMeanSpotSegmentation3DAlgorithm.getRadius1()
float	LocalMeanSpotSegmentation3DAlgorithm.getRadius2()
SeedSegmentationSettings	SpotSegmentation3DAlgorithm.getSeedSegmentationSettings()
SeedSegmentationSettings	Watershed3DSegmentationAlgorithm.getSeedSegmentationSettings()
int	SpotSegmentation3DAlgorithm.getSeedsThreshold()
int	Watershed3DSegmentationAlgorithm.getSeedsThreshold()
SpotSegmentation3DAlgorithm.SpotSegmentationMethod	SpotSegmentation3DAlgorithm.SpotSegmentationSettings.getSegmentationMethod()
IterativeThreshold3DAlgorithm.SegmentResultsMethod	IterativeThreshold3DAlgorithm.getSegmentResultsMethod()
SpotSegmentation3DAlgorithm.SpotSegmentationSettings	SpotSegmentation3DAlgorithm.getSpotSegmentationSettings()
IterativeThreshold3DAlgorithm.ThresholdMethod	IterativeThreshold3DAlgorithm.getThresholdMethod()
int	IterativeThreshold3DAlgorithm.getValueMethod()
int	Watershed3DSegmentationAlgorithm.getVoxelsThreshold()
float	LocalMeanSpotSegmentation3DAlgorithm.getWeight()
boolean	IterativeThreshold3DAlgorithm.isEnableFiltering()
boolean	SpotSegmentation3DAlgorithm.isEnableWatershed()
boolean	HysteresisSegmentation3DAlgorithm.isLabeling()
boolean	SpotSegmentation3DAlgorithm.isOutput32bit()
boolean	NucleiSegmentation3DAlgorithm.isSeparateNuclei()
boolean	IterativeThreshold3DAlgorithm.isStartsAtMean()
void	NucleiSegmentation3DAlgorithm.setAutoThresholdMethod(ij.process.AutoThresholder.Method autoThresholdMethod)
void	IterativeThreshold3DAlgorithm.setCriteriaMethod(IterativeThreshold3DAlgorithm.CriteriaMethod criteriaMethod)
void	NucleiSegmentation3DAlgorithm.setCustomThreshold(OptionalIntegerParameter customThreshold)
void	DifferenceSpotSegmentation3DAlgorithm.setDifference(float difference)
void	IterativeThreshold3DAlgorithm.setEnableFiltering(boolean enableFiltering)
void	SpotSegmentation3DAlgorithm.setEnableWatershed(boolean enableWatershed)
void	GaussianFitSpotSegmentation3DAlgorithm.setGaussPC(double gaussPC)
void	HysteresisSegmentation3DAlgorithm.setHighThreshold(float highThreshold)
void	HysteresisSegmentation3DAlgorithm.setLabeling(boolean labeling)
void	ConstantSpotSegmentation3DAlgorithm.setLocalBackground(int localBackground)
void	HysteresisSegmentation3DAlgorithm.setLowThreshold(float lowThreshold)
void	GaussianFitSpotSegmentation3DAlgorithm.setMaxRadius(int maxRadius)
void	IterativeThreshold3DAlgorithm.setMaxVolumePixels(int maxVolumePixels)
void	SpotSegmentation3DAlgorithm.setMaxVolumePixels(int maxVolumePixels)
void	IterativeThreshold3DAlgorithm.setMinContrastExp(int minContrastExp)
void	IterativeThreshold3DAlgorithm.setMinThreshold(int minThreshold)
void	IterativeThreshold3DAlgorithm.setMinVolumePixels(int minVolumePixels)
void	SpotSegmentation3DAlgorithm.setMinVolumePixels(int minVolumePixels)
void	SpotSegmentation3DAlgorithm.setOutput32bit(boolean output32bit)
void	SeedSegmentationSettings.setRadius(float radius)
void	LocalMeanSpotSegmentation3DAlgorithm.setRadius0(float radius0)
void	LocalMeanSpotSegmentation3DAlgorithm.setRadius1(float radius1)
void	LocalMeanSpotSegmentation3DAlgorithm.setRadius2(float radius2)
void	SpotSegmentation3DAlgorithm.setSeedsThreshold(int seedsThreshold)
void	Watershed3DSegmentationAlgorithm.setSeedsThreshold(int seedsThreshold)
void	SpotSegmentation3DAlgorithm.SpotSegmentationSettings.setSegmentationMethod(SpotSegmentation3DAlgorithm.SpotSegmentationMethod segmentationMethod)
void	IterativeThreshold3DAlgorithm.setSegmentResultsMethod(IterativeThreshold3DAlgorithm.SegmentResultsMethod segmentResultsMethod)
void	NucleiSegmentation3DAlgorithm.setSeparateNuclei(boolean separateNuclei)
void	IterativeThreshold3DAlgorithm.setStartsAtMean(boolean startsAtMean)
void	IterativeThreshold3DAlgorithm.setThresholdMethod(IterativeThreshold3DAlgorithm.ThresholdMethod thresholdMethod)
void	IterativeThreshold3DAlgorithm.setValueMethod(int valueMethod)
void	Watershed3DSegmentationAlgorithm.setVoxelsThreshold(int voxelsThreshold)
void	LocalMeanSpotSegmentation3DAlgorithm.setWeight(float weight)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ij3d.utils

Methods in org.hkijena.jipipe.plugins.ij3d.utils with annotations of type JIPipeParameter

Modifier and Type	Method and Description
double	Roi3DDrawer.getOpacity()
OptionalColorParameter	Roi3DDrawer.getOverrideFillColor()
boolean	Roi3DDrawer.isDrawOver()
void	Roi3DDrawer.setDrawOver(boolean drawOver)
boolean	Roi3DDrawer.setOpacity(double opacity)
void	Roi3DDrawer.setOverrideFillColor(OptionalColorParameter overrideFillColor)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ijfilaments.nodes.convert

Methods in org.hkijena.jipipe.plugins.ijfilaments.nodes.convert with annotations of type JIPipeParameter

Modifier and Type	Method and Description
CycleFinderAlgorithm	ConvertFilamentCyclesToROIAlgorithm.getCycleFinderAlgorithm()
FilamentsDrawer	ConvertFilamentsToRGBAlgorithm.getFilamentsDrawer()
OptionalIntegerParameter	ConvertFilamentsToRoiAlgorithm.getForcedLineThickness()
OptionalIntegerParameter	ConvertFilamentsToMaskAlgorithm.getForcedLineThickness()
OptionalIntegerParameter	ConvertFilamentsToLabels2Algorithm.getForcedLineThickness()
OptionalIntegerParameter	ConvertFilamentsToRoi3DAlgorithm.getForcedLineThickness()
OptionalIntegerParameter	ConvertFilamentsToLabelsAlgorithm.getForcedLineThickness()
OptionalIntegerParameter	ConvertFilamentsToRoiAlgorithm.getForcedVertexRadius()
OptionalIntegerParameter	ConvertFilamentsToMaskAlgorithm.getForcedVertexRadius()
OptionalIntegerParameter	ConvertFilamentsToLabels2Algorithm.getForcedVertexRadius()
OptionalIntegerParameter	ConvertFilamentsToRoi3DAlgorithm.getForcedVertexRadius()
OptionalIntegerParameter	ConvertFilamentsToLabelsAlgorithm.getForcedVertexRadius()
Quantity.LengthUnit	ConvertFilamentsTo3DMeshAlgorithm.getMeshLengthUnit()
String	ConvertFilamentsTo3DMeshAlgorithm.getMeshNamePrefix()
OptionalColorParameter	ConvertFilamentsTo3DMeshAlgorithm.getOverrideEdgeColor()
OptionalFloatParameter	ConvertFilamentsTo3DMeshAlgorithm.getOverrideEdgeRadius()
OptionalColorParameter	ConvertFilamentsTo3DMeshAlgorithm.getOverrideVertexColor()
OptionalFloatParameter	ConvertFilamentsTo3DMeshAlgorithm.getOverrideVertexRadius()
JIPipeExpressionParameter	ConvertFilamentCyclesToROIAlgorithm.getRoiName()
boolean	ConvertFilamentsToRGBAlgorithm.isDrawOverReference()
boolean	ConvertFilamentsTo3DMeshAlgorithm.isForceMeshLengthUnit()
boolean	ConvertFilamentsToLabels2Algorithm.isHollowVertices()
boolean	ConvertFilamentsToLabels2Algorithm.isIgnoreC()
boolean	ConvertFilamentsToRoiAlgorithm.isIgnoreNon2DEdges()
boolean	ConvertFilamentsToLabels2Algorithm.isIgnoreT()
boolean	ConvertFilamentsToLabels2Algorithm.isIgnoreZ()
boolean	ConvertFilamentsTo3DMeshAlgorithm.isPhysicalSizes()
boolean	ConvertFilamentsTo3DMeshAlgorithm.isSplitIntoConnectedComponents()
boolean	ConvertFilamentsToRoiAlgorithm.isThinLines()
boolean	ConvertFilamentsToRoiAlgorithm.isWithEdges()
boolean	ConvertFilamentsToMaskAlgorithm.isWithEdges()
boolean	ConvertFilamentsToLabels2Algorithm.isWithEdges()
boolean	ConvertFilamentsToRoi3DAlgorithm.isWithEdges()
boolean	ConvertFilamentsToLabelsAlgorithm.isWithEdges()
boolean	ConvertFilamentsTo3DMeshAlgorithm.isWithEdges()
boolean	ConvertFilamentsToRoiAlgorithm.isWithVertices()
boolean	ConvertFilamentsToMaskAlgorithm.isWithVertices()
boolean	ConvertFilamentsToLabels2Algorithm.isWithVertices()
boolean	ConvertFilamentsToRoi3DAlgorithm.isWithVertices()
boolean	ConvertFilamentsToLabelsAlgorithm.isWithVertices()
boolean	ConvertFilamentsTo3DMeshAlgorithm.isWithVertices()
void	ConvertFilamentCyclesToROIAlgorithm.setCycleFinderAlgorithm(CycleFinderAlgorithm cycleFinderAlgorithm)
void	ConvertFilamentsToRGBAlgorithm.setDrawOverReference(boolean drawOverReference)
void	ConvertFilamentsToRoiAlgorithm.setForcedLineThickness(OptionalIntegerParameter forcedLineThickness)
void	ConvertFilamentsToMaskAlgorithm.setForcedLineThickness(OptionalIntegerParameter forcedLineThickness)
void	ConvertFilamentsToLabels2Algorithm.setForcedLineThickness(OptionalIntegerParameter forcedLineThickness)
void	ConvertFilamentsToRoi3DAlgorithm.setForcedLineThickness(OptionalIntegerParameter forcedLineThickness)
void	ConvertFilamentsToLabelsAlgorithm.setForcedLineThickness(OptionalIntegerParameter forcedLineThickness)
void	ConvertFilamentsToRoiAlgorithm.setForcedVertexRadius(OptionalIntegerParameter forcedVertexRadius)
void	ConvertFilamentsToMaskAlgorithm.setForcedVertexRadius(OptionalIntegerParameter forcedVertexRadius)
void	ConvertFilamentsToLabels2Algorithm.setForcedVertexRadius(OptionalIntegerParameter forcedVertexRadius)
void	ConvertFilamentsToRoi3DAlgorithm.setForcedVertexRadius(OptionalIntegerParameter forcedVertexRadius)
void	ConvertFilamentsToLabelsAlgorithm.setForcedVertexRadius(OptionalIntegerParameter forcedVertexRadius)
void	ConvertFilamentsTo3DMeshAlgorithm.setForceMeshLengthUnit(boolean forceMeshLengthUnit)
void	ConvertFilamentsToLabels2Algorithm.setHollowVertices(boolean hollowVertices)
void	ConvertFilamentsToLabels2Algorithm.setIgnoreC(boolean ignoreC)
void	ConvertFilamentsToRoiAlgorithm.setIgnoreNon2DEdges(boolean ignoreNon2DEdges)
void	ConvertFilamentsToLabels2Algorithm.setIgnoreT(boolean ignoreT)
void	ConvertFilamentsToLabels2Algorithm.setIgnoreZ(boolean ignoreZ)
void	ConvertFilamentsTo3DMeshAlgorithm.setMeshLengthUnit(Quantity.LengthUnit meshLengthUnit)
void	ConvertFilamentsTo3DMeshAlgorithm.setMeshNamePrefix(String meshNamePrefix)
void	ConvertFilamentsTo3DMeshAlgorithm.setOverrideEdgeColor(OptionalColorParameter overrideEdgeColor)
void	ConvertFilamentsTo3DMeshAlgorithm.setOverrideEdgeRadius(OptionalFloatParameter overrideEdgeRadius)
void	ConvertFilamentsTo3DMeshAlgorithm.setOverrideVertexColor(OptionalColorParameter overrideVertexColor)
void	ConvertFilamentsTo3DMeshAlgorithm.setOverrideVertexRadius(OptionalFloatParameter overrideVertexRadius)
void	ConvertFilamentsTo3DMeshAlgorithm.setPhysicalSizes(boolean physicalSizes)
void	ConvertFilamentCyclesToROIAlgorithm.setRoiName(JIPipeExpressionParameter roiName)
void	ConvertFilamentsTo3DMeshAlgorithm.setSplitIntoConnectedComponents(boolean splitIntoConnectedComponents)
void	ConvertFilamentsToRoiAlgorithm.setThinLines(boolean thinLines)
void	ConvertFilamentsToRoiAlgorithm.setWithEdges(boolean withEdges)
void	ConvertFilamentsToMaskAlgorithm.setWithEdges(boolean withEdges)
void	ConvertFilamentsToLabels2Algorithm.setWithEdges(boolean withEdges)
void	ConvertFilamentsToRoi3DAlgorithm.setWithEdges(boolean withEdges)
void	ConvertFilamentsToLabelsAlgorithm.setWithEdges(boolean withEdges)
void	ConvertFilamentsTo3DMeshAlgorithm.setWithEdges(boolean withEdges)
void	ConvertFilamentsToRoiAlgorithm.setWithVertices(boolean withVertices)
void	ConvertFilamentsToMaskAlgorithm.setWithVertices(boolean withVertices)
void	ConvertFilamentsToLabels2Algorithm.setWithVertices(boolean withVertices)
void	ConvertFilamentsToRoi3DAlgorithm.setWithVertices(boolean withVertices)
void	ConvertFilamentsToLabelsAlgorithm.setWithVertices(boolean withVertices)
void	ConvertFilamentsTo3DMeshAlgorithm.setWithVertices(boolean withVertices)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ijfilaments.nodes.filter

Methods in org.hkijena.jipipe.plugins.ijfilaments.nodes.filter with annotations of type JIPipeParameter

Modifier and Type	Method and Description
double	RemoveBorderFilaments.getBorderDistance()
JIPipeExpressionParameter	FilterFilamentVerticesByProperties.getFilter()
JIPipeExpressionParameter	FilterFilamentsByProperties.getFilter()
JIPipeExpressionParameter	FilterFilamentEdgesByProperties.getFilter()
boolean	RemoveBorderFilaments.isRemoveInX()
boolean	RemoveBorderFilaments.isRemoveInY()
boolean	RemoveBorderFilaments.isRemoveInZ()
boolean	RemoveBorderFilaments.isUseThickness()
void	RemoveBorderFilaments.setBorderDistance(double borderDistance)
void	FilterFilamentVerticesByProperties.setFilter(JIPipeExpressionParameter filter)
void	FilterFilamentsByProperties.setFilter(JIPipeExpressionParameter filter)
void	FilterFilamentEdgesByProperties.setFilter(JIPipeExpressionParameter filter)
void	RemoveBorderFilaments.setRemoveInX(boolean removeInX)
void	RemoveBorderFilaments.setRemoveInY(boolean removeInY)
void	RemoveBorderFilaments.setRemoveInZ(boolean removeInZ)
void	RemoveBorderFilaments.setUseThickness(boolean useThickness)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ijfilaments.nodes.generate

Methods in org.hkijena.jipipe.plugins.ijfilaments.nodes.generate with annotations of type JIPipeParameter

Modifier and Type	Method and Description
double	TSOAXEvolutionParameters.getAlpha()
double	TSOAXEvolutionParameters.getAssociationThreshold()
double	TSOAXEvolutionParameters.getBackgroundZXYRatio()
double	TSOAXEvolutionParameters.getBeta()
double	TSOAXEvolutionParameters.getC()
double	TSOAXConvergenceParameters.getChangeThreshold()
int	TSOAXConvergenceParameters.getCheckPeriod()
TSOAXConvergenceParameters	TSOAXAlgorithm.getConvergenceParameters()
double	TSOAXEvolutionParameters.getDelta()
TSOAXEvolutionParameters	TSOAXAlgorithm.getEvolutionParameters()
double	TSOAXEvolutionParameters.getExternalFactor()
double	TSOAXEvolutionParameters.getGamma()
double	TSOAXInitializationParameters.getGaussianStd()
int	TSOAXEvolutionParameters.getGroupingDelta()
double	TSOAXEvolutionParameters.getGroupingDistanceThreshold()
TSOAXInitializationParameters	TSOAXAlgorithm.getInitializationParameters()
double	TSOAXInitializationParameters.getIntensityScaling()
double	TSOAXInitializationParameters.getMaximumForeground()
int	TSOAXConvergenceParameters.getMaximumIterations()
double	TSOAXEvolutionParameters.getMinimumAngleForSOACLinking()
double	TSOAXInitializationParameters.getMinimumForeground()
int	TSOAXConvergenceParameters.getMinimumSnakeLength()
int	TSOAXEvolutionParameters.getNumberOfBackgroundRadialSectors()
double	TSOAXEvolutionParameters.getOverlapThreshold()
OptionalTSOAXEnvironment	TSOAXAlgorithm.getOverrideEnvironment()
AnalyzeSkeleton2D3DAlgorithm.CycleRemovalMethod	SkeletonToSimplifiedFilamentsFijiAlgorithm.getPruneCyclesMethod()
AnalyzeSkeleton2D3DAlgorithm.EndRemovalMethod	SkeletonToSimplifiedFilamentsFijiAlgorithm.getPruneEndsMethod()
double	TSOAXEvolutionParameters.getRadialFar()
double	TSOAXEvolutionParameters.getRadialNear()
double	TSOAXInitializationParameters.getRidgeThreshold()
double	TSOAXInitializationParameters.getSnakePointSpacing()
double	TSOAXEvolutionParameters.getStretchFactor()
OptionalTextAnnotationNameParameter	TSOAXAlgorithm.getTrackAnnotationName()
OptionalTextAnnotationNameParameter	TSOAXResultAnalysisAlgorithm.getTrackAnnotationName()
OptionalTextAnnotationNameParameter	TSOAX2DAlgorithm.getzAnnotationName()
boolean	TSOAXAlgorithm.isCleanUpAfterwards()
boolean	TSOAXEvolutionParameters.isDampZ()
boolean	SkeletonToFilaments2DAlgorithm.isForce2D()
boolean	TSOAXEvolutionParameters.isGrouping()
boolean	TSOAXInitializationParameters.isInitZ()
boolean	TSOAXAlgorithm.isSplitByTrack()
boolean	TSOAXResultAnalysisAlgorithm.isSplitByTrack()
void	TSOAXEvolutionParameters.setAlpha(double alpha)
void	TSOAXEvolutionParameters.setAssociationThreshold(double associationThreshold)
void	TSOAXEvolutionParameters.setBackgroundZXYRatio(double backgroundZXYRatio)
void	TSOAXEvolutionParameters.setBeta(double beta)
void	TSOAXEvolutionParameters.setC(double c)
void	TSOAXConvergenceParameters.setChangeThreshold(double changeThreshold)
void	TSOAXConvergenceParameters.setCheckPeriod(int checkPeriod)
void	TSOAXAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards)
void	TSOAXEvolutionParameters.setDampZ(boolean dampZ)
void	TSOAXEvolutionParameters.setDelta(double delta)
void	TSOAXEvolutionParameters.setExternalFactor(double externalFactor)
void	SkeletonToFilaments2DAlgorithm.setForce2D(boolean force2D)
void	TSOAXEvolutionParameters.setGamma(double gamma)
void	TSOAXInitializationParameters.setGaussianStd(double gaussianStd)
void	TSOAXEvolutionParameters.setGrouping(boolean grouping)
void	TSOAXEvolutionParameters.setGroupingDelta(int groupingDelta)
void	TSOAXEvolutionParameters.setGroupingDistanceThreshold(double groupingDistanceThreshold)
void	TSOAXInitializationParameters.setInitZ(boolean initZ)
void	TSOAXInitializationParameters.setIntensityScaling(double intensityScaling)
void	TSOAXInitializationParameters.setMaximumForeground(double maximumForeground)
void	TSOAXConvergenceParameters.setMaximumIterations(int maximumIterations)
void	TSOAXEvolutionParameters.setMinimumAngleForSOACLinking(double minimumAngleForSOACLinking)
void	TSOAXInitializationParameters.setMinimumForeground(double minimumForeground)
void	TSOAXConvergenceParameters.setMinimumSnakeLength(int minimumSnakeLength)
void	TSOAXEvolutionParameters.setNumberOfBackgroundRadialSectors(int numberOfBackgroundRadialSectors)
void	TSOAXEvolutionParameters.setOverlapThreshold(double overlapThreshold)
void	TSOAXAlgorithm.setOverrideEnvironment(OptionalTSOAXEnvironment overrideEnvironment)
void	SkeletonToSimplifiedFilamentsFijiAlgorithm.setPruneCyclesMethod(AnalyzeSkeleton2D3DAlgorithm.CycleRemovalMethod pruneCyclesMethod)
void	SkeletonToSimplifiedFilamentsFijiAlgorithm.setPruneEndsMethod(AnalyzeSkeleton2D3DAlgorithm.EndRemovalMethod pruneEndsMethod)
void	TSOAXEvolutionParameters.setRadialFar(double radialFar)
void	TSOAXEvolutionParameters.setRadialNear(double radialNear)
void	TSOAXInitializationParameters.setRidgeThreshold(double ridgeThreshold)
void	TSOAXInitializationParameters.setSnakePointSpacing(double snakePointSpacing)
void	TSOAXAlgorithm.setSplitByTrack(boolean splitByTrack)
void	TSOAXResultAnalysisAlgorithm.setSplitByTrack(boolean splitByTrack)
void	TSOAXEvolutionParameters.setStretchFactor(double stretchFactor)
void	TSOAXAlgorithm.setTrackAnnotationName(OptionalTextAnnotationNameParameter trackAnnotationName)
void	TSOAXResultAnalysisAlgorithm.setTrackAnnotationName(OptionalTextAnnotationNameParameter trackAnnotationName)
void	TSOAX2DAlgorithm.setzAnnotationName(OptionalTextAnnotationNameParameter zAnnotationName)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ijfilaments.nodes.modify

Methods in org.hkijena.jipipe.plugins.ijfilaments.nodes.modify with annotations of type JIPipeParameter

Modifier and Type	Method and Description
StringAndStringPairParameter.List	SubdivideFilamentEdges.getAddMetadata()
JIPipeExpressionParameter	GrowEndVerticesAlgorithm.getAttitudeExpression()
JIPipeExpressionParameter	GrowEndVerticesAlgorithm.getAzimuthExpression()
JIPipeExpressionParameter	RemoveVertexValueBackupsAlgorithm.getBackupFilter()
StringQueryExpression	RestoreVertexValueBackupAlgorithm.getBackupFilter()
OptionalStringParameter	SetVertexValueFromImageAlgorithm.getBackupOldValue()
OptionalStringParameter	RestoreVertexValueBackupAlgorithm.getBackupOldValue()
OptionalStringParameter	SetVertexValueFromImageAlgorithm.getBackupOldValueToMetadata()
Vector2iParameter	ConnectVerticesFastAlgorithm.getCandidateVertexDegreeLimit()
Vector2dParameter	ConnectVerticesFastAlgorithm.getCandidateVertexValueLimit()
OptionalIntegerParameter	ChangeFilamentVertexPropertiesManuallyAlgorithm.getCentroidC()
JIPipeExpressionParameter	ChangeFilamentVertexPropertiesExpressionAlgorithm.getCentroidC()
OptionalIntegerParameter	ChangeFilamentVertexPropertiesManuallyAlgorithm.getCentroidT()
JIPipeExpressionParameter	ChangeFilamentVertexPropertiesExpressionAlgorithm.getCentroidT()
OptionalDoubleParameter	ChangeFilamentVertexPropertiesManuallyAlgorithm.getCentroidX()
JIPipeExpressionParameter	ChangeFilamentVertexPropertiesExpressionAlgorithm.getCentroidX()
OptionalDoubleParameter	ChangeFilamentVertexPropertiesManuallyAlgorithm.getCentroidY()
JIPipeExpressionParameter	ChangeFilamentVertexPropertiesExpressionAlgorithm.getCentroidY()
OptionalDoubleParameter	ChangeFilamentVertexPropertiesManuallyAlgorithm.getCentroidZ()
JIPipeExpressionParameter	ChangeFilamentVertexPropertiesExpressionAlgorithm.getCentroidZ()
OptionalColorParameter	ChangeFilamentEdgePropertiesManuallyAlgorithm.getColor()
JIPipeExpressionParameter	ChangeFilamentEdgePropertiesExpressionAlgorithm.getColor()
OptionalColorParameter	ChangeFilamentVertexPropertiesManuallyAlgorithm.getColor()
JIPipeExpressionParameter	ChangeFilamentVertexPropertiesExpressionAlgorithm.getColor()
CycleFinderAlgorithm	FilamentCyclesToComponentsAlgorithm.getCycleFinderAlgorithm()
OptionalStringParameter	FilamentCyclesToComponentsAlgorithm.getCycleIdAnnotation()
JIPipeExpressionParameter	GrowEndVerticesAlgorithm.getDistanceExpression()
OptionalStringParameter	FindLinearFilamentVertexOrderAlgorithm.getDistanceMetadataKey()
EdgeMaskParameter	ChangeFilamentEdgePropertiesManuallyAlgorithm.getEdgeMask()
EdgeMaskParameter	ChangeFilamentEdgePropertiesExpressionAlgorithm.getEdgeMask()
JIPipeExpressionParameter	ConnectVerticesAlgorithm.getFilterFunction()
int	GrowEndVerticesAlgorithm.getIterations()
int	ErodeEndVerticesAlgorithm.getIterations()
Vector2dParameter	ConnectVerticesFastAlgorithm.getLengthRange()
OptionalIntegerParameter	ConnectVerticesAlgorithm.getLimitConnections()
OptionalIntegerParameter	ConnectVerticesFastAlgorithm.getLimitConnections()
SortOrder	ConnectVerticesFastAlgorithm.getLimitConnectionsLengthSortOrder()
OptionalStringParameter	FindLinearFilamentVertexOrderAlgorithm.getMaxDistanceMetadataKey()
OptionalQuantity	SubdivideFilamentEdges.getMaximumLength()
OptionalIntegerParameter	SubdivideFilamentEdges.getMaximumNumIterations()
StringAndStringPairParameter.List	ChangeFilamentEdgePropertiesManuallyAlgorithm.getMetadata()
ParameterCollectionList	ChangeFilamentEdgePropertiesExpressionAlgorithm.getMetadata()
StringAndStringPairParameter.List	ChangeFilamentVertexPropertiesManuallyAlgorithm.getMetadata()
ParameterCollectionList	ChangeFilamentVertexPropertiesExpressionAlgorithm.getMetadata()
String	SetFilamentMetadataToComponentIndexAlgorithm.getMetadataKey()
String	SetVertexMetadataFromImageAlgorithm.getMetadataKey()
JIPipeExpressionParameter	RestoreVertexValueBackupAlgorithm.getMissingValue()
OptionalColorParameter	ConnectVerticesAlgorithm.getNewEdgeColor()
OptionalColorParameter	ConnectVerticesFastAlgorithm.getNewEdgeColor()
StringAndStringPairParameter.List	ConnectVerticesAlgorithm.getNewEdgeMetadata()
StringAndStringPairParameter.List	ConnectVerticesFastAlgorithm.getNewEdgeMetadata()
OptionalStringParameter	FindLinearFilamentVertexOrderAlgorithm.getOrderMetadataKey()
OptionalDoubleParameter	SubdivideFilamentEdges.getOverrideRadius()
OptionalDoubleParameter	SubdivideFilamentEdges.getOverrideValue()
OptionalQuantity	ChangeFilamentVertexPropertiesManuallyAlgorithm.getPhysicalSizeX()
JIPipeExpressionParameter	ChangeFilamentVertexPropertiesExpressionAlgorithm.getPhysicalSizeX()
OptionalQuantity	ChangeFilamentVertexPropertiesManuallyAlgorithm.getPhysicalSizeY()
JIPipeExpressionParameter	ChangeFilamentVertexPropertiesExpressionAlgorithm.getPhysicalSizeY()
OptionalQuantity	ChangeFilamentVertexPropertiesManuallyAlgorithm.getPhysicalSizeZ()
JIPipeExpressionParameter	ChangeFilamentVertexPropertiesExpressionAlgorithm.getPhysicalSizeZ()
OptionalDoubleParameter	ChangeFilamentVertexPropertiesManuallyAlgorithm.getRadius()
JIPipeExpressionParameter	ChangeFilamentVertexPropertiesExpressionAlgorithm.getRadius()
JIPipeExpressionParameter	ConnectVerticesAlgorithm.getScoringFunction()
OptionalJIPipeExpressionParameter	ConnectVerticesAlgorithm.getSourceVertexFilter()
OptionalJIPipeExpressionParameter	ConnectVerticesFastAlgorithm.getSourceVertexFilter()
JIPipeExpressionParameter	FindLinearFilamentVertexOrderAlgorithm.getStartPointSelectorFunction()
OptionalJIPipeExpressionParameter	ConnectVerticesAlgorithm.getTargetVertexFilter()
OptionalJIPipeExpressionParameter	ConnectVerticesFastAlgorithm.getTargetVertexFilter()
OptionalDoubleParameter	ChangeFilamentVertexPropertiesManuallyAlgorithm.getValue()
JIPipeExpressionParameter	ChangeFilamentVertexPropertiesExpressionAlgorithm.getValue()
VertexMaskParameter	GrowEndVerticesAlgorithm.getVertexMask()
VertexMaskParameter	ChangeFilamentVertexPropertiesManuallyAlgorithm.getVertexMask()
VertexMaskParameter	ChangeFilamentVertexPropertiesExpressionAlgorithm.getVertexMask()
VertexMaskParameter	SetVertexRadiusFromImageAlgorithm.getVertexMask()
VertexMaskParameter	SetVertexValueFromImageAlgorithm.getVertexMask()
VertexMaskParameter	ErodeEndVerticesAlgorithm.getVertexMask()
VertexMaskParameter	RemoveVertexValueBackupsAlgorithm.getVertexMask()
VertexMaskParameter	RestoreVertexValueBackupAlgorithm.getVertexMask()
boolean	ConnectVerticesAlgorithm.isConnectAcrossC()
boolean	ConnectVerticesFastAlgorithm.isConnectAcrossC()
boolean	ConnectVerticesAlgorithm.isConnectAcrossT()
boolean	ConnectVerticesFastAlgorithm.isConnectAcrossT()
boolean	ConnectVerticesAlgorithm.isEnable3D()
boolean	ConnectVerticesFastAlgorithm.isEnable3D()
boolean	ConnectVerticesAlgorithm.isEnforceEdgesWithinMask()
boolean	ConnectVerticesFastAlgorithm.isEnforceEdgesWithinMask()
boolean	ConnectVerticesAlgorithm.isFindPath()
boolean	ConnectVerticesFastAlgorithm.isIgnoreIfHasPath()
boolean	ConnectVerticesAlgorithm.isIgnoreLimitConnectionsForSource()
boolean	ConnectVerticesFastAlgorithm.isIgnoreLimitConnectionsForSource()
boolean	ConnectVerticesAlgorithm.isIgnoreLimitConnectionsForTarget()
boolean	ConnectVerticesFastAlgorithm.isIgnoreLimitConnectionsForTarget()
boolean	ConnectVerticesAlgorithm.isRequireDirection()
void	SubdivideFilamentEdges.setAddMetadata(StringAndStringPairParameter.List addMetadata)
void	GrowEndVerticesAlgorithm.setAttitudeExpression(JIPipeExpressionParameter attitudeExpression)
void	GrowEndVerticesAlgorithm.setAzimuthExpression(JIPipeExpressionParameter azimuthExpression)
void	RemoveVertexValueBackupsAlgorithm.setBackupFilter(JIPipeExpressionParameter backupFilter)
void	RestoreVertexValueBackupAlgorithm.setBackupFilter(StringQueryExpression backupFilter)
void	SetVertexValueFromImageAlgorithm.setBackupOldValue(OptionalStringParameter backupOldValue)
void	RestoreVertexValueBackupAlgorithm.setBackupOldValue(OptionalStringParameter backupOldValue)
void	SetVertexValueFromImageAlgorithm.setBackupOldValueToMetadata(OptionalStringParameter backupOldValueToMetadata)
void	ConnectVerticesFastAlgorithm.setCandidateVertexDegreeLimit(Vector2iParameter candidateVertexDegreeLimit)
void	ConnectVerticesFastAlgorithm.setCandidateVertexValueLimit(Vector2dParameter candidateVertexValueLimit)
void	ChangeFilamentVertexPropertiesExpressionAlgorithm.setCentroidC(JIPipeExpressionParameter centroidC)
void	ChangeFilamentVertexPropertiesManuallyAlgorithm.setCentroidC(OptionalIntegerParameter centroidC)
void	ChangeFilamentVertexPropertiesExpressionAlgorithm.setCentroidT(JIPipeExpressionParameter centroidT)
void	ChangeFilamentVertexPropertiesManuallyAlgorithm.setCentroidT(OptionalIntegerParameter centroidT)
void	ChangeFilamentVertexPropertiesExpressionAlgorithm.setCentroidX(JIPipeExpressionParameter centroidX)
void	ChangeFilamentVertexPropertiesManuallyAlgorithm.setCentroidX(OptionalDoubleParameter centroidX)
void	ChangeFilamentVertexPropertiesExpressionAlgorithm.setCentroidY(JIPipeExpressionParameter centroidY)
void	ChangeFilamentVertexPropertiesManuallyAlgorithm.setCentroidY(OptionalDoubleParameter centroidY)
void	ChangeFilamentVertexPropertiesExpressionAlgorithm.setCentroidZ(JIPipeExpressionParameter centroidZ)
void	ChangeFilamentVertexPropertiesManuallyAlgorithm.setCentroidZ(OptionalDoubleParameter centroidZ)
void	ChangeFilamentEdgePropertiesExpressionAlgorithm.setColor(JIPipeExpressionParameter color)
void	ChangeFilamentVertexPropertiesExpressionAlgorithm.setColor(JIPipeExpressionParameter color)
void	ChangeFilamentEdgePropertiesManuallyAlgorithm.setColor(OptionalColorParameter color)
void	ChangeFilamentVertexPropertiesManuallyAlgorithm.setColor(OptionalColorParameter color)
void	ConnectVerticesAlgorithm.setConnectAcrossC(boolean connectAcrossC)
void	ConnectVerticesFastAlgorithm.setConnectAcrossC(boolean connectAcrossC)
void	ConnectVerticesAlgorithm.setConnectAcrossT(boolean connectAcrossT)
void	ConnectVerticesFastAlgorithm.setConnectAcrossT(boolean connectAcrossT)
void	FilamentCyclesToComponentsAlgorithm.setCycleFinderAlgorithm(CycleFinderAlgorithm cycleFinderAlgorithm)
void	FilamentCyclesToComponentsAlgorithm.setCycleIdAnnotation(OptionalStringParameter cycleIdAnnotation)
void	GrowEndVerticesAlgorithm.setDistanceExpression(JIPipeExpressionParameter distanceExpression)
void	FindLinearFilamentVertexOrderAlgorithm.setDistanceMetadataKey(OptionalStringParameter distanceMetadataKey)
void	ConnectVerticesAlgorithm.setEnable3D(boolean enable3D)
void	ConnectVerticesFastAlgorithm.setEnable3D(boolean enable3D)
void	ConnectVerticesAlgorithm.setEnforceEdgesWithinMask(boolean enforceEdgesWithinMask)
void	ConnectVerticesFastAlgorithm.setEnforceEdgesWithinMask(boolean enforceEdgesWithinMask)
void	ConnectVerticesAlgorithm.setFilterFunction(JIPipeExpressionParameter filterFunction)
void	ConnectVerticesAlgorithm.setFindPath(boolean findPath)
void	ConnectVerticesFastAlgorithm.setIgnoreIfHasPath(boolean ignoreIfHasPath)
void	ConnectVerticesAlgorithm.setIgnoreLimitConnectionsForSource(boolean ignoreLimitConnectionsForSource)
void	ConnectVerticesFastAlgorithm.setIgnoreLimitConnectionsForSource(boolean ignoreLimitConnectionsForSource)
void	ConnectVerticesAlgorithm.setIgnoreLimitConnectionsForTarget(boolean ignoreLimitConnectionsForTarget)
void	ConnectVerticesFastAlgorithm.setIgnoreLimitConnectionsForTarget(boolean ignoreLimitConnectionsForTarget)
void	GrowEndVerticesAlgorithm.setIterations(int iterations)
void	ErodeEndVerticesAlgorithm.setIterations(int iterations)
void	ConnectVerticesFastAlgorithm.setLengthRange(Vector2dParameter lengthRange)
void	ConnectVerticesAlgorithm.setLimitConnections(OptionalIntegerParameter limitConnections)
void	ConnectVerticesFastAlgorithm.setLimitConnections(OptionalIntegerParameter limitConnections)
void	ConnectVerticesFastAlgorithm.setLimitConnectionsLengthSortOrder(SortOrder limitConnectionsLengthSortOrder)
void	FindLinearFilamentVertexOrderAlgorithm.setMaxDistanceMetadataKey(OptionalStringParameter maxDistanceMetadataKey)
void	SubdivideFilamentEdges.setMaximumLength(OptionalQuantity maximumLength)
void	SubdivideFilamentEdges.setMaximumNumIterations(OptionalIntegerParameter maximumNumIterations)
void	ChangeFilamentEdgePropertiesExpressionAlgorithm.setMetadata(ParameterCollectionList metadata)
void	ChangeFilamentVertexPropertiesExpressionAlgorithm.setMetadata(ParameterCollectionList metadata)
void	ChangeFilamentEdgePropertiesManuallyAlgorithm.setMetadata(StringAndStringPairParameter.List metadata)
void	ChangeFilamentVertexPropertiesManuallyAlgorithm.setMetadata(StringAndStringPairParameter.List metadata)
void	SetFilamentMetadataToComponentIndexAlgorithm.setMetadataKey(String metadataKey)
void	SetVertexMetadataFromImageAlgorithm.setMetadataKey(String metadataKey)
void	RestoreVertexValueBackupAlgorithm.setMissingValue(JIPipeExpressionParameter missingValue)
void	ConnectVerticesAlgorithm.setNewEdgeColor(OptionalColorParameter newEdgeColor)
void	ConnectVerticesFastAlgorithm.setNewEdgeColor(OptionalColorParameter newEdgeColor)
void	ConnectVerticesAlgorithm.setNewEdgeMetadata(StringAndStringPairParameter.List newEdgeMetadata)
void	ConnectVerticesFastAlgorithm.setNewEdgeMetadata(StringAndStringPairParameter.List newEdgeMetadata)
void	FindLinearFilamentVertexOrderAlgorithm.setOrderMetadataKey(OptionalStringParameter orderMetadataKey)
void	SubdivideFilamentEdges.setOverrideRadius(OptionalDoubleParameter overrideRadius)
void	SubdivideFilamentEdges.setOverrideValue(OptionalDoubleParameter overrideValue)
void	ChangeFilamentVertexPropertiesExpressionAlgorithm.setPhysicalSizeX(JIPipeExpressionParameter physicalSizeX)
void	ChangeFilamentVertexPropertiesManuallyAlgorithm.setPhysicalSizeX(OptionalQuantity physicalSizeX)
void	ChangeFilamentVertexPropertiesExpressionAlgorithm.setPhysicalSizeY(JIPipeExpressionParameter physicalSizeY)
void	ChangeFilamentVertexPropertiesManuallyAlgorithm.setPhysicalSizeY(OptionalQuantity physicalSizeY)
void	ChangeFilamentVertexPropertiesExpressionAlgorithm.setPhysicalSizeZ(JIPipeExpressionParameter physicalSizeZ)
void	ChangeFilamentVertexPropertiesManuallyAlgorithm.setPhysicalSizeZ(OptionalQuantity physicalSizeZ)
void	ChangeFilamentVertexPropertiesExpressionAlgorithm.setRadius(JIPipeExpressionParameter radius)
void	ChangeFilamentVertexPropertiesManuallyAlgorithm.setRadius(OptionalDoubleParameter radius)
void	ConnectVerticesAlgorithm.setRequireDirection(boolean requireDirection)
void	ConnectVerticesAlgorithm.setScoringFunction(JIPipeExpressionParameter scoringFunction)
void	ConnectVerticesAlgorithm.setSourceVertexFilter(OptionalJIPipeExpressionParameter sourceVertexFilter)
void	ConnectVerticesFastAlgorithm.setSourceVertexFilter(OptionalJIPipeExpressionParameter sourceVertexFilter)
void	FindLinearFilamentVertexOrderAlgorithm.setStartPointSelectorFunction(JIPipeExpressionParameter startPointSelectorFunction)
void	ConnectVerticesAlgorithm.setTargetVertexFilter(OptionalJIPipeExpressionParameter targetVertexFilter)
void	ConnectVerticesFastAlgorithm.setTargetVertexFilter(OptionalJIPipeExpressionParameter targetVertexFilter)
void	ChangeFilamentVertexPropertiesExpressionAlgorithm.setValue(JIPipeExpressionParameter value)
void	ChangeFilamentVertexPropertiesManuallyAlgorithm.setValue(OptionalDoubleParameter value)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ijfilaments.nodes.process

Methods in org.hkijena.jipipe.plugins.ijfilaments.nodes.process with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeExpressionParameter	CopyFilamentsAcrossZCTAlgorithm.NewEdgesSettings.getColor()
CopyFilamentsAcrossZCTAlgorithm.NewEdgesSettings	CopyFilamentsAcrossZCTAlgorithm.getConnectNewVerticesToStartSettings()
CopyFilamentsAcrossZCTAlgorithm.NewEdgesSettings	CopyFilamentsAcrossZCTAlgorithm.getConnectOverDimensionLinearSettings()
HyperstackDimension	CopyFilamentsAcrossZCTAlgorithm.getDimension()
double	SmoothFilamentsAlgorithm.getFactorX()
double	SmoothFilamentsAlgorithm.getFactorY()
double	SmoothFilamentsAlgorithm.getFactorZ()
OptionalJIPipeExpressionParameter	CopyFilamentsAcrossZCTAlgorithm.NewEdgesSettings.getFilter()
JIPipeExpressionParameter	FixOverlapsNonBranchingAlgorithm.getFilterFunction()
JIPipeExpressionParameter	SmoothFilamentsAlgorithm.getLocationMergingFunction()
JIPipeExpressionParameter	CopyFilamentsAcrossZCTAlgorithm.getLocations()
ParameterCollectionList	CopyFilamentsAcrossZCTAlgorithm.NewEdgesSettings.getMetadata()
OptionalColorParameter	FixOverlapsNonBranchingAlgorithm.getNewEdgeColor()
JIPipeExpressionParameter	FixOverlapsNonBranchingAlgorithm.getScoringFunction()
VertexMaskParameter	CopyFilamentsAcrossZCTAlgorithm.getVertexMask()
boolean	FixOverlapsNonBranchingAlgorithm.isConnectAcrossC()
boolean	FixOverlapsNonBranchingAlgorithm.isConnectAcrossT()
boolean	CopyFilamentsAcrossZCTAlgorithm.isConnectNewVerticesToStart()
boolean	CopyFilamentsAcrossZCTAlgorithm.isConnectOverDimensionLinear()
boolean	CopyFilamentsAcrossZCTAlgorithm.isCopyOriginalEdges()
boolean	FixOverlapsNonBranchingAlgorithm.isEnable3D()
boolean	FixOverlapsNonBranchingAlgorithm.isEnforceEdgesWithinMask()
boolean	FixOverlapsNonBranchingAlgorithm.isEnforceSameComponent()
boolean	SmoothFilamentsAlgorithm.isEnforceSameComponent()
boolean	FixOverlapsNonBranchingAlgorithm.isEnsureNoPathExists()
boolean	FixOverlapsNonBranchingAlgorithm.isExcludeExistingEndpoints()
boolean	RemoveDuplicateVerticesAlgorithm.isOnlySameComponent()
void	CopyFilamentsAcrossZCTAlgorithm.NewEdgesSettings.setColor(JIPipeExpressionParameter color)
void	FixOverlapsNonBranchingAlgorithm.setConnectAcrossC(boolean connectAcrossC)
void	FixOverlapsNonBranchingAlgorithm.setConnectAcrossT(boolean connectAcrossT)
void	CopyFilamentsAcrossZCTAlgorithm.setConnectNewVerticesToStart(boolean connectNewVerticesToStart)
void	CopyFilamentsAcrossZCTAlgorithm.setConnectOverDimensionLinear(boolean connectOverDimensionLinear)
void	CopyFilamentsAcrossZCTAlgorithm.setCopyOriginalEdges(boolean copyOriginalEdges)
void	CopyFilamentsAcrossZCTAlgorithm.setDimension(HyperstackDimension dimension)
void	FixOverlapsNonBranchingAlgorithm.setEnable3D(boolean enable3D)
void	FixOverlapsNonBranchingAlgorithm.setEnforceEdgesWithinMask(boolean enforceEdgesWithinMask)
void	FixOverlapsNonBranchingAlgorithm.setEnforceSameComponent(boolean enforceSameComponent)
void	SmoothFilamentsAlgorithm.setEnforceSameComponent(boolean enforceSameComponent)
void	FixOverlapsNonBranchingAlgorithm.setEnsureNoPathExists(boolean ensureNoPathExists)
void	FixOverlapsNonBranchingAlgorithm.setExcludeExistingEndpoints(boolean excludeExistingEndpoints)
void	SmoothFilamentsAlgorithm.setFactorX(double factorX)
void	SmoothFilamentsAlgorithm.setFactorY(double factorY)
void	SmoothFilamentsAlgorithm.setFactorZ(double factorZ)
void	CopyFilamentsAcrossZCTAlgorithm.NewEdgesSettings.setFilter(OptionalJIPipeExpressionParameter filter)
void	FixOverlapsNonBranchingAlgorithm.setFilterFunction(JIPipeExpressionParameter filterFunction)
void	SmoothFilamentsAlgorithm.setLocationMergingFunction(JIPipeExpressionParameter locationMergingFunction)
void	CopyFilamentsAcrossZCTAlgorithm.setLocations(JIPipeExpressionParameter locations)
void	CopyFilamentsAcrossZCTAlgorithm.NewEdgesSettings.setMetadata(ParameterCollectionList metadata)
void	FixOverlapsNonBranchingAlgorithm.setNewEdgeColor(OptionalColorParameter newEdgeColor)
void	RemoveDuplicateVerticesAlgorithm.setOnlySameComponent(boolean onlySameComponent)
void	FixOverlapsNonBranchingAlgorithm.setScoringFunction(JIPipeExpressionParameter scoringFunction)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ijfilaments.nodes.split

Methods in org.hkijena.jipipe.plugins.ijfilaments.nodes.split with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalTextAnnotationNameParameter	SplitFilamentsIntoConnectedComponentsAlgorithm.getComponentIdAnnotation()
OptionalTextAnnotationNameParameter	SplitFilamentsIntoCyclesAlgorithm.getCycleIdAnnotation()
void	SplitFilamentsIntoConnectedComponentsAlgorithm.setComponentIdAnnotation(OptionalTextAnnotationNameParameter componentIdAnnotation)
void	SplitFilamentsIntoCyclesAlgorithm.setCycleIdAnnotation(OptionalTextAnnotationNameParameter cycleIdAnnotation)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ijfilaments.nodes.utils

Methods in org.hkijena.jipipe.plugins.ijfilaments.nodes.utils with annotations of type JIPipeParameter

Modifier and Type	Method and Description
String	FilamentEdgeMetadataEntry.getKey()
String	FilamentsVertexMetadataEntry.getKey()
JIPipeExpressionParameter	FilamentEdgeMetadataEntry.getValue()
JIPipeExpressionParameter	FilamentsVertexMetadataEntry.getValue()
void	FilamentEdgeMetadataEntry.setKey(String key)
void	FilamentsVertexMetadataEntry.setKey(String key)
void	FilamentEdgeMetadataEntry.setValue(JIPipeExpressionParameter value)
void	FilamentsVertexMetadataEntry.setValue(JIPipeExpressionParameter value)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ijfilaments.parameters

Methods in org.hkijena.jipipe.plugins.ijfilaments.parameters with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeExpressionParameter	EdgeMaskParameter.getFilter()
OptionalJIPipeExpressionParameter	VertexMaskParameter.getFilter()
void	EdgeMaskParameter.setFilter(JIPipeExpressionParameter filter)
void	VertexMaskParameter.setFilter(OptionalJIPipeExpressionParameter filter)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ijfilaments.settings

Methods in org.hkijena.jipipe.plugins.ijfilaments.settings with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalTSOAXEnvironment	TSOAXApplicationSettings.getDefaultEnvironment()
FilamentsDrawer	ImageViewerUIFilamentDisplayApplicationSettings.getFilamentDrawer()
TSOAXEnvironment.List	TSOAXApplicationSettings.getPresets()
OptionalTSOAXEnvironment	FilamentsPluginProjectSettings.getProjectDefaultTSOAXEnvironment()
boolean	ImageViewerUIFilamentDisplayApplicationSettings.isShowFilaments()
void	TSOAXApplicationSettings.setDefaultEnvironment(OptionalTSOAXEnvironment defaultEnvironment)
void	TSOAXApplicationSettings.setPresets(TSOAXEnvironment.List presets)
void	FilamentsPluginProjectSettings.setProjectDefaultTSOAXEnvironment(OptionalTSOAXEnvironment projectDefaultTSOAXEnvironment)
void	ImageViewerUIFilamentDisplayApplicationSettings.setShowFilaments(boolean showFilaments)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ijfilaments.util

Methods in org.hkijena.jipipe.plugins.ijfilaments.util with annotations of type JIPipeParameter

Modifier and Type	Method and Description
ImageBlendMode	FilamentsDrawer.getBlendMode()
double	FilamentsDrawer.getOpacity()
OptionalColorParameter	FilamentsDrawer.getOverrideEdgeColor()
OptionalIntegerParameter	FilamentsDrawer.getOverrideEdgeThickness()
OptionalColorParameter	FilamentsDrawer.getOverrideVertexColor()
OptionalIntegerParameter	FilamentsDrawer.getOverrideVertexRadius()
boolean	FilamentsDrawer.isDrawEdges()
boolean	FilamentsDrawer.isDrawVertices()
boolean	FilamentsDrawer.isHollowVertices()
boolean	FilamentsDrawer.isIgnoreC()
boolean	FilamentsDrawer.isIgnoreT()
boolean	FilamentsDrawer.isIgnoreZ()
void	FilamentsDrawer.setBlendMode(ImageBlendMode blendMode)
void	FilamentsDrawer.setDrawEdges(boolean drawEdges)
void	FilamentsDrawer.setDrawVertices(boolean drawVertices)
void	FilamentsDrawer.setHollowVertices(boolean hollowVertices)
void	FilamentsDrawer.setIgnoreC(boolean ignoreC)
void	FilamentsDrawer.setIgnoreT(boolean ignoreT)
void	FilamentsDrawer.setIgnoreZ(boolean ignoreZ)
void	FilamentsDrawer.setOpacity(double opacity)
void	FilamentsDrawer.setOverrideEdgeColor(OptionalColorParameter overrideEdgeColor)
void	FilamentsDrawer.setOverrideEdgeThickness(OptionalIntegerParameter overrideEdgeThickness)
void	FilamentsDrawer.setOverrideVertexColor(OptionalColorParameter overrideVertexColor)
void	FilamentsDrawer.setOverrideVertexRadius(OptionalIntegerParameter overrideVertexRadius)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ijmultitemplatematching

Methods in org.hkijena.jipipe.plugins.ijmultitemplatematching with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalColorParameter	MultiTemplateMatchingAlgorithm.getAssembleTemplatesBackground()
OptionalDataInfoRefParameter	MultiTemplateMatchingAlgorithm.getAssembleTemplatesOutput()
int	MultiTemplateMatchingAlgorithm.getExpectedNumberOfObjects()
double	MultiTemplateMatchingAlgorithm.getMultiObjectMaximumBoundingBoxOverlap()
double	MultiTemplateMatchingAlgorithm.getMultiObjectScoreThreshold()
IntegerRange	MultiTemplateMatchingAlgorithm.getRotateTemplate()
TemplateMatchingMethod	MultiTemplateMatchingAlgorithm.getTemplateMatchingMethod()
boolean	MultiTemplateMatchingAlgorithm.isAssembleTemplates()
boolean	MultiTemplateMatchingAlgorithm.isFlipTemplateHorizontally()
boolean	MultiTemplateMatchingAlgorithm.isFlipTemplateVertically()
boolean	MultiTemplateMatchingAlgorithm.isOutputMatchedTemplates()
boolean	MultiTemplateMatchingAlgorithm.isRestrictToROI()
boolean	MultiTemplateMatchingAlgorithm.isWithNonMaximaSuppression()
void	MultiTemplateMatchingAlgorithm.setAssembleTemplates(boolean assembleTemplates)
void	MultiTemplateMatchingAlgorithm.setAssembleTemplatesBackground(OptionalColorParameter assembleTemplatesBackground)
void	MultiTemplateMatchingAlgorithm.setAssembleTemplatesOutput(OptionalDataInfoRefParameter assembleTemplatesOutput)
boolean	MultiTemplateMatchingAlgorithm.setExpectedNumberOfObjects(int expectedNumberOfObjects)
void	MultiTemplateMatchingAlgorithm.setFlipTemplateHorizontally(boolean flipTemplateHorizontally)
void	MultiTemplateMatchingAlgorithm.setFlipTemplateVertically(boolean flipTemplateVertically)
boolean	MultiTemplateMatchingAlgorithm.setMultiObjectMaximumBoundingBoxOverlap(double multiObjectMaximumBoundingBoxOverlap)
boolean	MultiTemplateMatchingAlgorithm.setMultiObjectScoreThreshold(double multiObjectScoreThreshold)
void	MultiTemplateMatchingAlgorithm.setOutputMatchedTemplates(boolean outputMatchedTemplates)
void	MultiTemplateMatchingAlgorithm.setRestrictToROI(boolean restrictToROI)
void	MultiTemplateMatchingAlgorithm.setRotateTemplate(IntegerRange rotateTemplate)
void	MultiTemplateMatchingAlgorithm.setTemplateMatchingMethod(TemplateMatchingMethod templateMatchingMethod)
void	MultiTemplateMatchingAlgorithm.setWithNonMaximaSuppression(boolean withNonMaximaSuppression)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ijocr.nodes

Methods in org.hkijena.jipipe.plugins.ijocr.nodes with annotations of type JIPipeParameter

Modifier and Type	Method and Description
TesseractOCREngineMode	TesseractOCRAlgorithm.getEngineMode()
DynamicStringSetParameter	TesseractOCRAlgorithm.getLanguages()
OptionalJIPipeExpressionParameter	TesseractOCRAlgorithm.getOverrideCharAllowList()
OptionalJIPipeExpressionParameter	TesseractOCRAlgorithm.getOverrideDPI()
OptionalTesseractOCREnvironment	TesseractOCRAlgorithm.getOverrideTesseractOCREnvironment()
TesseractPageSegmentationMethod	TesseractOCRAlgorithm.getPageSegmentationMethod()
void	TesseractOCRAlgorithm.setEngineMode(TesseractOCREngineMode engineMode)
void	TesseractOCRAlgorithm.setLanguages(DynamicStringSetParameter languages)
void	TesseractOCRAlgorithm.setOverrideCharAllowList(OptionalJIPipeExpressionParameter overrideCharAllowList)
void	TesseractOCRAlgorithm.setOverrideDPI(OptionalJIPipeExpressionParameter overrideDPI)
void	TesseractOCRAlgorithm.setOverrideTesseractOCREnvironment(OptionalTesseractOCREnvironment overrideTesseractOCREnvironment)
void	TesseractOCRAlgorithm.setPageSegmentationMethod(TesseractPageSegmentationMethod pageSegmentationMethod)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ijocr.settings

Methods in org.hkijena.jipipe.plugins.ijocr.settings with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalTesseractOCREnvironment	TesseractOCRApplicationSettings.getDefaultEnvironment()
TesseractOCREnvironment.List	TesseractOCRApplicationSettings.getPresets()
OptionalTesseractOCREnvironment	OCRPluginProjectSettings.getProjectDefaultEnvironment()
void	TesseractOCRApplicationSettings.setDefaultEnvironment(OptionalTesseractOCREnvironment defaultEnvironment)
void	TesseractOCRApplicationSettings.setPresets(TesseractOCREnvironment.List presets)
void	OCRPluginProjectSettings.setProjectDefaultEnvironment(OptionalTesseractOCREnvironment projectDefaultEnvironment)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ijtrackmate.nodes.converters

Methods in org.hkijena.jipipe.plugins.ijtrackmate.nodes.converters with annotations of type JIPipeParameter

Modifier and Type	Method and Description
NamedTextAnnotationGeneratorExpression.List	ConvertTracksToRoiNode.getAnnotationGenerator()
OptionalJIPipeExpressionParameter	ConvertSpotsToRoiNode.getFillColor()
OptionalJIPipeExpressionParameter	ConvertTracksToRoiNode.getFillColor()
OptionalJIPipeExpressionParameter	ConvertSpotsToRoiNode.getLineColor()
OptionalJIPipeExpressionParameter	ConvertTracksToRoiNode.getLineColor()
OptionalJIPipeExpressionParameter	ConvertSpotsToRoiNode.getLineWidth()
OptionalJIPipeExpressionParameter	ConvertTracksToRoiNode.getLineWidth()
OptionalJIPipeExpressionParameter	ConvertSpotsToRoiNode.getRoiName()
OptionalJIPipeExpressionParameter	ConvertTracksToRoiNode.getRoiName()
void	ConvertTracksToRoiNode.setAnnotationGenerator(NamedTextAnnotationGeneratorExpression.List annotationGenerator)
void	ConvertSpotsToRoiNode.setFillColor(OptionalJIPipeExpressionParameter fillColor)
void	ConvertTracksToRoiNode.setFillColor(OptionalJIPipeExpressionParameter fillColor)
void	ConvertSpotsToRoiNode.setLineColor(OptionalJIPipeExpressionParameter lineColor)
void	ConvertTracksToRoiNode.setLineColor(OptionalJIPipeExpressionParameter lineColor)
void	ConvertSpotsToRoiNode.setLineWidth(OptionalJIPipeExpressionParameter lineWidth)
void	ConvertTracksToRoiNode.setLineWidth(OptionalJIPipeExpressionParameter lineWidth)
void	ConvertSpotsToRoiNode.setRoiName(OptionalJIPipeExpressionParameter roiName)
void	ConvertTracksToRoiNode.setRoiName(OptionalJIPipeExpressionParameter roiName)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ijtrackmate.nodes.detectors

Methods in org.hkijena.jipipe.plugins.ijtrackmate.nodes.detectors with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeDynamicParameterCollection	CreateSpotDetectorNode.getParameters()
JIPipeDynamicParameterCollection	CreateSpotTrackerNode.getParameters()

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ijtrackmate.nodes.spots

Methods in org.hkijena.jipipe.plugins.ijtrackmate.nodes.spots with annotations of type JIPipeParameter

Modifier and Type	Method and Description
NamedTextAnnotationGeneratorExpression.List	SplitSpotsNode.getAnnotationGenerator()
JIPipeExpressionParameter	SpotFilterNode.getFilter()
double	SpotsToRGBNode.getMagnification()
SpotDrawer	SpotsToRGBNode.getSpotDrawer()
void	SplitSpotsNode.setAnnotationGenerator(NamedTextAnnotationGeneratorExpression.List annotationGenerator)
void	SpotFilterNode.setFilter(JIPipeExpressionParameter filter)
void	SpotsToRGBNode.setMagnification(double magnification)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ijtrackmate.nodes.tracks

Methods in org.hkijena.jipipe.plugins.ijtrackmate.nodes.tracks with annotations of type JIPipeParameter

Modifier and Type	Method and Description
NamedTextAnnotationGeneratorExpression.List	SplitTracksNode.getAnnotationGenerator()
JIPipeExpressionParameter	TrackFilterNode.getFilter()
double	TracksToRGBNode.getMagnification()
int	FollowSpotsPerTrackNode.getMinHeight()
int	FollowSpotsPerTrackNode.getMinWidth()
TrackDrawer	TracksToRGBNode.getTrackDrawer()
OptionalTextAnnotationNameParameter	FollowSpotsPerTrackNode.getTrackIDAnnotation()
boolean	FollowSpotsPerTrackNode.isCropT()
boolean	FollowSpotsPerTrackNode.isCropXY()
boolean	FollowSpotsPerTrackNode.isCropZ()
void	SplitTracksNode.setAnnotationGenerator(NamedTextAnnotationGeneratorExpression.List annotationGenerator)
void	FollowSpotsPerTrackNode.setCropT(boolean cropT)
void	FollowSpotsPerTrackNode.setCropXY(boolean cropXY)
void	FollowSpotsPerTrackNode.setCropZ(boolean cropZ)
void	TrackFilterNode.setFilter(JIPipeExpressionParameter filter)
void	TracksToRGBNode.setMagnification(double magnification)
void	FollowSpotsPerTrackNode.setMinHeight(int minHeight)
void	FollowSpotsPerTrackNode.setMinWidth(int minWidth)
void	FollowSpotsPerTrackNode.setTrackIDAnnotation(OptionalTextAnnotationNameParameter trackIDAnnotation)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ijtrackmate.parameters

Methods in org.hkijena.jipipe.plugins.ijtrackmate.parameters with annotations of type JIPipeParameter

Modifier and Type	Method and Description
TrackFeature	TrackFeatureFilterParameter.getFeature()
SpotFeature	SpotFeaturePenaltyParameter.getFeature()
SpotFeature	SpotFeatureFilterParameter.getFeature()
double	SpotFeaturePenaltyParameter.getPenalty()
double	TrackFeatureFilterParameter.getValue()
double	SpotFeatureFilterParameter.getValue()
boolean	TrackFeatureFilterParameter.isAbove()
boolean	SpotFeatureFilterParameter.isAbove()
void	TrackFeatureFilterParameter.setAbove(boolean above)
void	SpotFeatureFilterParameter.setAbove(boolean above)
void	SpotFeaturePenaltyParameter.setFeature(SpotFeature feature)
void	SpotFeatureFilterParameter.setFeature(SpotFeature feature)
void	TrackFeatureFilterParameter.setFeature(TrackFeature feature)
void	SpotFeaturePenaltyParameter.setPenalty(double penalty)
void	TrackFeatureFilterParameter.setValue(double value)
void	SpotFeatureFilterParameter.setValue(double value)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ijtrackmate.settings

Methods in org.hkijena.jipipe.plugins.ijtrackmate.settings with annotations of type JIPipeParameter

Modifier and Type	Method and Description
SpotDrawer	ImageViewerUISpotsDisplayApplicationSettings.getSpotDrawer()
TrackDrawer	ImageViewerUITracksDisplayApplicationSettings.getTrackDrawer()
boolean	ImageViewerUISpotsDisplayApplicationSettings.isShowSpots()
boolean	ImageViewerUITracksDisplayApplicationSettings.isShowTracks()
void	ImageViewerUISpotsDisplayApplicationSettings.setShowSpots(boolean showSpots)
void	ImageViewerUITracksDisplayApplicationSettings.setShowTracks(boolean showTracks)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ijtrackmate.utils

Methods in org.hkijena.jipipe.plugins.ijtrackmate.utils with annotations of type JIPipeParameter

Modifier and Type	Method and Description
SpotFeature	SpotDrawer.LabelSettings.getDrawnFeature()
int	TrackDrawer.getFadeTrackRange()
OptionalColorParameter	DrawerLabelSettings.getLabelBackground()
Color	DrawerLabelSettings.getLabelForeground()
SpotDrawer.LabelSettings	SpotDrawer.getLabelSettings()
int	DrawerLabelSettings.getLabelSize()
Color	TrackDrawer.getStrokeColor()
Color	SpotDrawer.getStrokeColor()
EdgeFeature	TrackDrawer.getStrokeColorEdgeFeature()
SpotFeature	SpotDrawer.getStrokeColorFeature()
TrackDrawer.StrokeColorMode	TrackDrawer.getStrokeColorMode()
TrackFeature	TrackDrawer.getStrokeColorTrackFeature()
int	TrackDrawer.getStrokeWidth()
int	SpotDrawer.getStrokeWidth()
fiji.plugin.trackmate.gui.displaysettings.DisplaySettings.TrackDisplayMode	TrackDrawer.getTrackDisplayMode()
boolean	DrawerLabelSettings.isDrawLabels()
boolean	SpotDrawer.LabelSettings.isDrawName()
boolean	SpotDrawer.isFillSpots()
boolean	SpotDrawer.isUniformStrokeColor()
void	DrawerLabelSettings.setDrawLabels(boolean drawLabels)
void	SpotDrawer.LabelSettings.setDrawName(boolean drawName)
void	SpotDrawer.LabelSettings.setDrawnFeature(SpotFeature drawnFeature)
void	TrackDrawer.setFadeTrackRange(int fadeTrackRange)
void	SpotDrawer.setFillSpots(boolean fillSpots)
void	DrawerLabelSettings.setLabelBackground(OptionalColorParameter labelBackground)
void	DrawerLabelSettings.setLabelForeground(Color labelForeground)
boolean	DrawerLabelSettings.setLabelSize(int labelSize)
void	TrackDrawer.setStrokeColor(Color strokeColor)
void	SpotDrawer.setStrokeColor(Color strokeColor)
void	TrackDrawer.setStrokeColorEdgeFeature(EdgeFeature strokeColorEdgeFeature)
void	SpotDrawer.setStrokeColorFeature(SpotFeature strokeColorFeature)
void	TrackDrawer.setStrokeColorMode(TrackDrawer.StrokeColorMode strokeColorMode)
void	TrackDrawer.setStrokeColorTrackFeature(TrackFeature strokeColorTrackFeature)
void	TrackDrawer.setStrokeWidth(int strokeWidth)
void	SpotDrawer.setStrokeWidth(int strokeWidth)
void	TrackDrawer.setTrackDisplayMode(fiji.plugin.trackmate.gui.displaysettings.DisplaySettings.TrackDisplayMode trackDisplayMode)
void	SpotDrawer.setUniformStrokeColor(boolean uniformStrokeColor)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ijweka.nodes

Methods in org.hkijena.jipipe.plugins.ijweka.nodes with annotations of type JIPipeParameter

Modifier and Type	Method and Description
InputSlotMapParameterCollection	WekaTrainingROI2DAlgorithm.getClassAssignment()
InputSlotMapParameterCollection	WekaTrainingROI3DAlgorithm.getClassAssignment()
WekaClassifierSettings	WekaTrainingMask2DAlgorithm.getClassifierSettings()
WekaClassifierSettings	WekaTrainingLabels2DAlgorithm.getClassifierSettings()
WekaClassifierSettings	WekaTrainingMask2DAlgorithm2.getClassifierSettings()
WekaClassifierSettings	WekaTrainingLabels2DAlgorithm2.getClassifierSettings()
WekaClassifierSettings	WekaTrainingROI2DAlgorithm.getClassifierSettings()
WekaClassifierSettings	WekaTrainingROI3DAlgorithm.getClassifierSettings()
WekaFeature2DSettings	WekaTrainingMask2DAlgorithm.getFeatureSettings()
WekaFeature2DSettings	WekaTrainingLabels2DAlgorithm.getFeatureSettings()
WekaFeature2DSettings	WekaTrainingMask2DAlgorithm2.getFeatureSettings()
WekaFeature2DSettings	WekaTrainingLabels2DAlgorithm2.getFeatureSettings()
WekaFeature2DSettings	WekaTrainingROI2DAlgorithm.getFeatureSettings()
WekaFeature3DSettings	WekaTrainingROI3DAlgorithm.getFeatureSettings()
DataAnnotationQueryExpression	WekaTrainingMask2DAlgorithm2.getLabelDataAnnotation()
DataAnnotationQueryExpression	WekaTrainingLabels2DAlgorithm2.getLabelDataAnnotation()
OptionalIntegerParameter	WekaClassification2DAlgorithm.getNumThreads()
OptionalIntegerParameter	WekaClassification3DAlgorithm.getNumThreads()
WekaTiling3DSettings	WekaClassification3DAlgorithm.getTilingParameters()
WekaTiling2DSettings	WekaClassification2DAlgorithm.getTilingSettings()
boolean	WekaClassification2DAlgorithm.isOutputProbabilityMaps()
boolean	WekaClassification3DAlgorithm.isOutputProbabilityMaps()
boolean	ImportWekaModelFromFileAlgorithm.isProcessing3D()
void	WekaTrainingMask2DAlgorithm2.setLabelDataAnnotation(DataAnnotationQueryExpression labelDataAnnotation)
void	WekaTrainingLabels2DAlgorithm2.setLabelDataAnnotation(DataAnnotationQueryExpression labelDataAnnotation)
void	WekaClassification2DAlgorithm.setNumThreads(OptionalIntegerParameter numThreads)
void	WekaClassification3DAlgorithm.setNumThreads(OptionalIntegerParameter numThreads)
void	WekaClassification2DAlgorithm.setOutputProbabilityMaps(boolean outputProbabilityMaps)
void	WekaClassification3DAlgorithm.setOutputProbabilityMaps(boolean outputProbabilityMaps)
void	ImportWekaModelFromFileAlgorithm.setProcessing3D(boolean processing3D)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ijweka.parameters

Methods in org.hkijena.jipipe.plugins.ijweka.parameters with annotations of type JIPipeParameter

Modifier and Type	Method and Description
WekaClassifierParameter	WekaClassifierSettings.getClassifier()
boolean	WekaClassifierSettings.isBalanceClasses()
void	WekaClassifierSettings.setBalanceClasses(boolean balanceClasses)
void	WekaClassifierSettings.setClassifier(WekaClassifierParameter classifier)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ijweka.parameters.collections

Methods in org.hkijena.jipipe.plugins.ijweka.parameters.collections with annotations of type JIPipeParameter

Modifier and Type	Method and Description
BorderMode	WekaTiling2DSettings.getBorderMode()
float	WekaFeature2DSettings.getMaxSigma()
float	WekaFeature3DSettings.getMaxSigma()
int	WekaFeature2DSettings.getMembranePatchSize()
int	WekaFeature3DSettings.getMembranePatchSize()
int	WekaFeature2DSettings.getMembraneSize()
int	WekaFeature3DSettings.getMembraneSize()
float	WekaFeature2DSettings.getMinSigma()
float	WekaFeature3DSettings.getMinSigma()
int	WekaTiling2DSettings.getOverlapX()
int	WekaTiling2DSettings.getOverlapY()
int	WekaTiling3DSettings.getTileSizeX()
int	WekaTiling2DSettings.getTileSizeX()
int	WekaTiling3DSettings.getTileSizeY()
int	WekaTiling2DSettings.getTileSizeY()
int	WekaTiling3DSettings.getTileSizeZ()
WekaFeatureSet2D	WekaFeature2DSettings.getTrainingFeatures()
WekaFeatureSet3D	WekaFeature3DSettings.getTrainingFeatures()
boolean	WekaTiling3DSettings.isApplyTiling()
boolean	WekaTiling2DSettings.isApplyTiling()
boolean	WekaFeature2DSettings.isUseNeighbors()
boolean	WekaFeature3DSettings.isUseNeighbors()
boolean	WekaTiling2DSettings.isUseWekaNativeTiling()
void	WekaTiling3DSettings.setApplyTiling(boolean applyTiling)
void	WekaTiling2DSettings.setApplyTiling(boolean applyTiling)
void	WekaTiling2DSettings.setBorderMode(BorderMode borderMode)
void	WekaFeature2DSettings.setMaxSigma(float maxSigma)
void	WekaFeature3DSettings.setMaxSigma(float maxSigma)
void	WekaFeature2DSettings.setMembranePatchSize(int membranePatchSize)
void	WekaFeature3DSettings.setMembranePatchSize(int membranePatchSize)
void	WekaFeature2DSettings.setMembraneSize(int membraneSize)
void	WekaFeature3DSettings.setMembraneSize(int membraneSize)
void	WekaFeature2DSettings.setMinSigma(float minSigma)
void	WekaFeature3DSettings.setMinSigma(float minSigma)
boolean	WekaTiling2DSettings.setOverlapX(int overlapX)
boolean	WekaTiling2DSettings.setOverlapY(int overlapY)
void	WekaTiling3DSettings.setTileSizeX(int tileSizeX)
void	WekaTiling2DSettings.setTileSizeX(int tileSizeX)
void	WekaTiling3DSettings.setTileSizeY(int tileSizeY)
void	WekaTiling2DSettings.setTileSizeY(int tileSizeY)
void	WekaTiling3DSettings.setTileSizeZ(int tileSizeZ)
void	WekaFeature2DSettings.setTrainingFeatures(WekaFeatureSet2D trainingFeatures)
void	WekaFeature3DSettings.setTrainingFeatures(WekaFeatureSet3D trainingFeatures)
void	WekaFeature2DSettings.setUseNeighbors(boolean useNeighbors)
void	WekaFeature3DSettings.setUseNeighbors(boolean useNeighbors)
void	WekaTiling2DSettings.setUseWekaNativeTiling(boolean useWekaNativeTiling)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ilastik.nodes

Methods in org.hkijena.jipipe.plugins.ilastik.nodes with annotations of type JIPipeParameter

Modifier and Type	Method and Description
CalibrationParameters	ImportIlastikHDF5ImageAlgorithm.getCalibrationParameters()
DataExportExpressionParameter	ExportIlastikHDF5ImageAlgorithm.getFilePath()
JIPipeExpressionParameter	ImportIlastikHDF5ImageAlgorithm.getHdf5Path()
JIPipeExpressionParameter	ExportIlastikHDF5ImageAlgorithm.getHdf5Path()
IlastikObjectClassificationAlgorithm.OutputParameters	IlastikObjectClassificationAlgorithm.getOutputParameters()
IlastikSegmentationImageObjectClassificationAlgorithm.OutputParameters	IlastikSegmentationImageObjectClassificationAlgorithm.getOutputParameters()
IlastikPixelClassificationAlgorithm.OutputParameters	IlastikPixelClassificationAlgorithm.getOutputParameters()
IlastikAutoContextAlgorithm.OutputParameters	IlastikAutoContextAlgorithm.getOutputParameters()
IlastikPredictionMapsObjectClassificationAlgorithm.OutputParameters	IlastikPredictionMapsObjectClassificationAlgorithm.getOutputParameters()
OptionalStringParameter	ImportIlastikHDF5ImageAlgorithm.getOverrideAxes()
OptionalStringParameter	ExportIlastikHDF5ImageAlgorithm.getOverrideAxes()
OptionalIlastikEnvironment	IlastikObjectClassificationAlgorithm.getOverrideEnvironment()
OptionalIlastikEnvironment	IlastikSegmentationImageObjectClassificationAlgorithm.getOverrideEnvironment()
OptionalIlastikEnvironment	IlastikPixelClassificationAlgorithm.getOverrideEnvironment()
OptionalIlastikEnvironment	IlastikAutoContextAlgorithm.getOverrideEnvironment()
OptionalIlastikEnvironment	IlastikPredictionMapsObjectClassificationAlgorithm.getOverrideEnvironment()
DataAnnotationQueryExpression	IlastikPredictionMapsObjectClassificationAlgorithm.getPredictionMapsDataAnnotation()
IlastikProjectValidationMode	IlastikObjectClassificationAlgorithm.getProjectValidationMode()
IlastikProjectValidationMode	IlastikSegmentationImageObjectClassificationAlgorithm.getProjectValidationMode()
IlastikProjectValidationMode	IlastikPixelClassificationAlgorithm.getProjectValidationMode()
IlastikProjectValidationMode	IlastikAutoContextAlgorithm.getProjectValidationMode()
IlastikProjectValidationMode	IlastikPredictionMapsObjectClassificationAlgorithm.getProjectValidationMode()
DataAnnotationQueryExpression	IlastikSegmentationImageObjectClassificationAlgorithm.getSegmentationImageDataAnnotation()
boolean	IlastikObjectClassificationAlgorithm.isCleanUpAfterwards()
boolean	IlastikSegmentationImageObjectClassificationAlgorithm.isCleanUpAfterwards()
boolean	IlastikPixelClassificationAlgorithm.isCleanUpAfterwards()
boolean	IlastikAutoContextAlgorithm.isCleanUpAfterwards()
boolean	IlastikPredictionMapsObjectClassificationAlgorithm.isCleanUpAfterwards()
boolean	ImportIlastikModel.isLink()
boolean	IlastikObjectClassificationAlgorithm.OutputParameters.isOutputBlockwiseObjectPredictions()
boolean	IlastikSegmentationImageObjectClassificationAlgorithm.OutputParameters.isOutputBlockwiseObjectPredictions()
boolean	IlastikPredictionMapsObjectClassificationAlgorithm.OutputParameters.isOutputBlockwiseObjectPredictions()
boolean	IlastikObjectClassificationAlgorithm.OutputParameters.isOutputBlockwiseObjectProbabilities()
boolean	IlastikSegmentationImageObjectClassificationAlgorithm.OutputParameters.isOutputBlockwiseObjectProbabilities()
boolean	IlastikPredictionMapsObjectClassificationAlgorithm.OutputParameters.isOutputBlockwiseObjectProbabilities()
boolean	IlastikObjectClassificationAlgorithm.OutputParameters.isOutputFeatures()
boolean	IlastikSegmentationImageObjectClassificationAlgorithm.OutputParameters.isOutputFeatures()
boolean	IlastikPixelClassificationAlgorithm.OutputParameters.isOutputFeatures()
boolean	IlastikPredictionMapsObjectClassificationAlgorithm.OutputParameters.isOutputFeatures()
boolean	IlastikAutoContextAlgorithm.OutputParameters.isOutputFeaturesStage1()
boolean	IlastikAutoContextAlgorithm.OutputParameters.isOutputFeaturesStage2()
boolean	IlastikAutoContextAlgorithm.OutputParameters.isOutputInputStage1()
boolean	IlastikAutoContextAlgorithm.OutputParameters.isOutputInputStage2()
boolean	IlastikPixelClassificationAlgorithm.OutputParameters.isOutputLabels()
boolean	IlastikAutoContextAlgorithm.OutputParameters.isOutputLabelsStage1()
boolean	IlastikAutoContextAlgorithm.OutputParameters.isOutputLabelsStage2()
boolean	IlastikObjectClassificationAlgorithm.OutputParameters.isOutputObjectPredictions()
boolean	IlastikSegmentationImageObjectClassificationAlgorithm.OutputParameters.isOutputObjectPredictions()
boolean	IlastikPredictionMapsObjectClassificationAlgorithm.OutputParameters.isOutputObjectPredictions()
boolean	IlastikObjectClassificationAlgorithm.OutputParameters.isOutputObjectProbabilities()
boolean	IlastikSegmentationImageObjectClassificationAlgorithm.OutputParameters.isOutputObjectProbabilities()
boolean	IlastikPredictionMapsObjectClassificationAlgorithm.OutputParameters.isOutputObjectProbabilities()
boolean	IlastikObjectClassificationAlgorithm.OutputParameters.isOutputPixelProbabilities()
boolean	IlastikSegmentationImageObjectClassificationAlgorithm.OutputParameters.isOutputPixelProbabilities()
boolean	IlastikPredictionMapsObjectClassificationAlgorithm.OutputParameters.isOutputPixelProbabilities()
boolean	IlastikPixelClassificationAlgorithm.OutputParameters.isOutputProbabilities()
boolean	IlastikAutoContextAlgorithm.OutputParameters.isOutputProbabilitiesAllStages()
boolean	IlastikAutoContextAlgorithm.OutputParameters.isOutputProbabilitiesStage1()
boolean	IlastikAutoContextAlgorithm.OutputParameters.isOutputProbabilitiesStage2()
boolean	IlastikPixelClassificationAlgorithm.OutputParameters.isOutputSimpleSegmentation()
boolean	IlastikAutoContextAlgorithm.OutputParameters.isOutputSimpleSegmentationStage1()
boolean	IlastikAutoContextAlgorithm.OutputParameters.isOutputSimpleSegmentationStage2()
boolean	IlastikPixelClassificationAlgorithm.OutputParameters.isOutputUncertainty()
boolean	IlastikAutoContextAlgorithm.OutputParameters.isOutputUncertaintyStage1()
boolean	IlastikAutoContextAlgorithm.OutputParameters.isOutputUncertaintyStage2()
void	IlastikObjectClassificationAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards)
void	IlastikSegmentationImageObjectClassificationAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards)
void	IlastikPixelClassificationAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards)
void	IlastikAutoContextAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards)
void	IlastikPredictionMapsObjectClassificationAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards)
void	ExportIlastikHDF5ImageAlgorithm.setFilePath(DataExportExpressionParameter filePath)
void	ImportIlastikHDF5ImageAlgorithm.setHdf5Path(JIPipeExpressionParameter hdf5Path)
void	ExportIlastikHDF5ImageAlgorithm.setHdf5Path(JIPipeExpressionParameter hdf5Path)
void	ImportIlastikModel.setLink(boolean link)
void	IlastikObjectClassificationAlgorithm.OutputParameters.setOutputBlockwiseObjectPredictions(boolean outputBlockwiseObjectPredictions)
void	IlastikSegmentationImageObjectClassificationAlgorithm.OutputParameters.setOutputBlockwiseObjectPredictions(boolean outputBlockwiseObjectPredictions)
void	IlastikPredictionMapsObjectClassificationAlgorithm.OutputParameters.setOutputBlockwiseObjectPredictions(boolean outputBlockwiseObjectPredictions)
void	IlastikObjectClassificationAlgorithm.OutputParameters.setOutputBlockwiseObjectProbabilities(boolean outputBlockwiseObjectProbabilities)
void	IlastikSegmentationImageObjectClassificationAlgorithm.OutputParameters.setOutputBlockwiseObjectProbabilities(boolean outputBlockwiseObjectProbabilities)
void	IlastikPredictionMapsObjectClassificationAlgorithm.OutputParameters.setOutputBlockwiseObjectProbabilities(boolean outputBlockwiseObjectProbabilities)
void	IlastikObjectClassificationAlgorithm.OutputParameters.setOutputFeatures(boolean outputFeatures)
void	IlastikSegmentationImageObjectClassificationAlgorithm.OutputParameters.setOutputFeatures(boolean outputFeatures)
void	IlastikPixelClassificationAlgorithm.OutputParameters.setOutputFeatures(boolean outputFeatures)
void	IlastikPredictionMapsObjectClassificationAlgorithm.OutputParameters.setOutputFeatures(boolean outputFeatures)
void	IlastikAutoContextAlgorithm.OutputParameters.setOutputFeaturesStage1(boolean outputFeaturesStage1)
void	IlastikAutoContextAlgorithm.OutputParameters.setOutputFeaturesStage2(boolean outputFeaturesStage2)
void	IlastikAutoContextAlgorithm.OutputParameters.setOutputInputStage1(boolean outputInputStage1)
void	IlastikAutoContextAlgorithm.OutputParameters.setOutputInputStage2(boolean outputInputStage2)
void	IlastikPixelClassificationAlgorithm.OutputParameters.setOutputLabels(boolean outputLabels)
void	IlastikAutoContextAlgorithm.OutputParameters.setOutputLabelsStage1(boolean outputLabelsStage1)
void	IlastikAutoContextAlgorithm.OutputParameters.setOutputLabelsStage2(boolean outputLabelsStage2)
void	IlastikObjectClassificationAlgorithm.OutputParameters.setOutputObjectPredictions(boolean outputObjectPredictions)
void	IlastikSegmentationImageObjectClassificationAlgorithm.OutputParameters.setOutputObjectPredictions(boolean outputObjectPredictions)
void	IlastikPredictionMapsObjectClassificationAlgorithm.OutputParameters.setOutputObjectPredictions(boolean outputObjectPredictions)
void	IlastikObjectClassificationAlgorithm.OutputParameters.setOutputObjectProbabilities(boolean outputObjectProbabilities)
void	IlastikSegmentationImageObjectClassificationAlgorithm.OutputParameters.setOutputObjectProbabilities(boolean outputObjectProbabilities)
void	IlastikPredictionMapsObjectClassificationAlgorithm.OutputParameters.setOutputObjectProbabilities(boolean outputObjectProbabilities)
void	IlastikObjectClassificationAlgorithm.OutputParameters.setOutputPixelProbabilities(boolean outputPixelProbabilities)
void	IlastikSegmentationImageObjectClassificationAlgorithm.OutputParameters.setOutputPixelProbabilities(boolean outputPixelProbabilities)
void	IlastikPredictionMapsObjectClassificationAlgorithm.OutputParameters.setOutputPixelProbabilities(boolean outputPixelProbabilities)
void	IlastikPixelClassificationAlgorithm.OutputParameters.setOutputProbabilities(boolean outputProbabilities)
void	IlastikAutoContextAlgorithm.OutputParameters.setOutputProbabilitiesAllStages(boolean outputProbabilitiesAllStages)
void	IlastikAutoContextAlgorithm.OutputParameters.setOutputProbabilitiesStage1(boolean outputProbabilitiesStage1)
void	IlastikAutoContextAlgorithm.OutputParameters.setOutputProbabilitiesStage2(boolean outputProbabilitiesStage2)
void	IlastikPixelClassificationAlgorithm.OutputParameters.setOutputSimpleSegmentation(boolean outputSimpleSegmentation)
void	IlastikAutoContextAlgorithm.OutputParameters.setOutputSimpleSegmentationStage1(boolean outputSimpleSegmentationStage1)
void	IlastikAutoContextAlgorithm.OutputParameters.setOutputSimpleSegmentationStage2(boolean outputSimpleSegmentationStage2)
void	IlastikPixelClassificationAlgorithm.OutputParameters.setOutputUncertainty(boolean outputUncertainty)
void	IlastikAutoContextAlgorithm.OutputParameters.setOutputUncertaintyStage1(boolean outputUncertaintyStage1)
void	IlastikAutoContextAlgorithm.OutputParameters.setOutputUncertaintyStage2(boolean outputUncertaintyStage2)
void	ImportIlastikHDF5ImageAlgorithm.setOverrideAxes(OptionalStringParameter overrideAxes)
void	ExportIlastikHDF5ImageAlgorithm.setOverrideAxes(OptionalStringParameter overrideAxes)
void	IlastikObjectClassificationAlgorithm.setOverrideEnvironment(OptionalIlastikEnvironment overrideEnvironment)
void	IlastikSegmentationImageObjectClassificationAlgorithm.setOverrideEnvironment(OptionalIlastikEnvironment overrideEnvironment)
void	IlastikPixelClassificationAlgorithm.setOverrideEnvironment(OptionalIlastikEnvironment overrideEnvironment)
void	IlastikAutoContextAlgorithm.setOverrideEnvironment(OptionalIlastikEnvironment overrideEnvironment)
void	IlastikPredictionMapsObjectClassificationAlgorithm.setOverrideEnvironment(OptionalIlastikEnvironment overrideEnvironment)
void	IlastikPredictionMapsObjectClassificationAlgorithm.setPredictionMapsDataAnnotation(DataAnnotationQueryExpression predictionMapsDataAnnotation)
void	IlastikObjectClassificationAlgorithm.setProjectValidationMode(IlastikProjectValidationMode projectValidationMode)
void	IlastikSegmentationImageObjectClassificationAlgorithm.setProjectValidationMode(IlastikProjectValidationMode projectValidationMode)
void	IlastikPixelClassificationAlgorithm.setProjectValidationMode(IlastikProjectValidationMode projectValidationMode)
void	IlastikAutoContextAlgorithm.setProjectValidationMode(IlastikProjectValidationMode projectValidationMode)
void	IlastikPredictionMapsObjectClassificationAlgorithm.setProjectValidationMode(IlastikProjectValidationMode projectValidationMode)
void	IlastikSegmentationImageObjectClassificationAlgorithm.setSegmentationImageDataAnnotation(DataAnnotationQueryExpression segmentationImageDataAnnotation)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.ilastik.settings

Methods in org.hkijena.jipipe.plugins.ilastik.settings with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalIlastikEnvironment	IlastikPluginApplicationSettings.getDefaultEnvironment()
int	IlastikPluginApplicationSettings.getMaxMemory()
int	IlastikPluginApplicationSettings.getMaxThreads()
IlastikEnvironment.List	IlastikPluginApplicationSettings.getPresets()
OptionalIlastikEnvironment	IlastikPluginProjectSettings.getProjectDefaultEnvironment()
void	IlastikPluginApplicationSettings.setDefaultEnvironment(OptionalIlastikEnvironment defaultEnvironment)
void	IlastikPluginApplicationSettings.setMaxMemory(int maxMemory)
void	IlastikPluginApplicationSettings.setMaxThreads(int maxThreads)
void	IlastikPluginApplicationSettings.setPresets(IlastikEnvironment.List presets)
void	IlastikPluginProjectSettings.setProjectDefaultEnvironment(OptionalIlastikEnvironment projectDefaultEnvironment)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagej2

Methods in org.hkijena.jipipe.plugins.imagej2 with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeDynamicParameterCollection	ImageJ2OpNode.getModuleParameters()

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagej2.algorithms

Methods in org.hkijena.jipipe.plugins.imagej2.algorithms with annotations of type JIPipeParameter

Modifier and Type	Method and Description
ImageJ2OutOfBoundsFactoryData	CreateIJ2OutOfBoundsFactoryAlgorithm.getFactoryData()
JIPipeDataInfoRef	CreateIJ2OutOfBoundsFactoryAlgorithm.getFactoryType()
ImageJ2ShapeData	CreateIJ2ShapeAlgorithm.getShapeData()
JIPipeDataInfoRef	CreateIJ2ShapeAlgorithm.getShapeType()
void	CreateIJ2OutOfBoundsFactoryAlgorithm.setFactoryType(JIPipeDataInfoRef factoryType)
void	CreateIJ2ShapeAlgorithm.setShapeType(JIPipeDataInfoRef shapeType)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagej2.datatypes.outofbounds

Methods in org.hkijena.jipipe.plugins.imagej2.datatypes.outofbounds with annotations of type JIPipeParameter

Modifier and Type	Method and Description
net.imglib2.outofbounds.OutOfBoundsMirrorFactory.Boundary	MirrorImageJ2OutOfBoundsFactoryData.getBoundary()
void	MirrorImageJ2OutOfBoundsFactoryData.setBoundary(net.imglib2.outofbounds.OutOfBoundsMirrorFactory.Boundary boundary)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagej2.datatypes.outofbounds.constant

Methods in org.hkijena.jipipe.plugins.imagej2.datatypes.outofbounds.constant with annotations of type JIPipeParameter

Modifier and Type	Method and Description
float	FloatConstantValueImageJ2OutOfBoundsFactoryData.getValue()
int	IntegerConstantValueImageJ2OutOfBoundsFactoryData.getValue()
long	LongConstantValueImageJ2OutOfBoundsFactoryData.getValue()
short	ShortConstantValueImageJ2OutOfBoundsFactoryData.getValue()
byte	ByteConstantValueImageJ2OutOfBoundsFactoryData.getValue()
double	DoubleConstantValueImageJ2OutOfBoundsFactoryData.getValue()
void	ByteConstantValueImageJ2OutOfBoundsFactoryData.setValue(byte value)
void	DoubleConstantValueImageJ2OutOfBoundsFactoryData.setValue(double value)
void	FloatConstantValueImageJ2OutOfBoundsFactoryData.setValue(float value)
void	IntegerConstantValueImageJ2OutOfBoundsFactoryData.setValue(int value)
void	LongConstantValueImageJ2OutOfBoundsFactoryData.setValue(long value)
void	ShortConstantValueImageJ2OutOfBoundsFactoryData.setValue(short value)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagej2.datatypes.shapes

Methods in org.hkijena.jipipe.plugins.imagej2.datatypes.shapes with annotations of type JIPipeParameter

Modifier and Type	Method and Description
IntegerList	PeriodicLineImageJ2ShapeData.getIncrements()
int	HorizontalLineImageJ2ShapeData.getLineDimension()
LongList	PairOfPointsImageJ2ShapeData.getOffset()
long	DiamondImageJ2ShapeData.getRadius()
long	HyperSphereImageJ2ShapeData.getRadius()
long	DiamondTipsImageJ2ShapeData.getRadius()
int	RectangleImageJ2ShapeData.getSpan()
long	PeriodicLineImageJ2ShapeData.getSpan()
long	HorizontalLineImageJ2ShapeData.getSpan()
IntegerList	CenteredRectangleImageJ2ShapeData.getSpan()
boolean	RectangleImageJ2ShapeData.isSkipCenter()
boolean	HorizontalLineImageJ2ShapeData.isSkipCenter()
boolean	CenteredRectangleImageJ2ShapeData.isSkipCenter()
void	PeriodicLineImageJ2ShapeData.setIncrements(IntegerList increments)
void	HorizontalLineImageJ2ShapeData.setLineDimension(int lineDimension)
void	PairOfPointsImageJ2ShapeData.setOffset(LongList offset)
void	DiamondImageJ2ShapeData.setRadius(long radius)
void	HyperSphereImageJ2ShapeData.setRadius(long radius)
void	DiamondTipsImageJ2ShapeData.setRadius(long radius)
void	RectangleImageJ2ShapeData.setSkipCenter(boolean skipCenter)
void	HorizontalLineImageJ2ShapeData.setSkipCenter(boolean skipCenter)
void	CenteredRectangleImageJ2ShapeData.setSkipCenter(boolean skipCenter)
void	RectangleImageJ2ShapeData.setSpan(int span)
void	CenteredRectangleImageJ2ShapeData.setSpan(IntegerList span)
void	PeriodicLineImageJ2ShapeData.setSpan(long span)
void	HorizontalLineImageJ2ShapeData.setSpan(long span)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes with annotations of type JIPipeParameter

Modifier and Type	Method and Description
ImageJMacro	MacroWrapperAlgorithm.getCode()
int	MacroWrapperAlgorithm.getExportDelay()
int	MacroWrapperAlgorithm.getImportDelay()
InputSlotMapParameterCollection	MacroWrapperAlgorithm.getInputToImageJExporters()
JIPipeDynamicParameterCollection	MacroWrapperAlgorithm.getMacroParameters()
OutputSlotMapParameterCollection	MacroWrapperAlgorithm.getOutputFromImageJImporters()
void	MacroWrapperAlgorithm.setCode(ImageJMacro code)
void	MacroWrapperAlgorithm.setExportDelay(int exportDelay)
void	MacroWrapperAlgorithm.setImportDelay(int importDelay)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.analyze

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.analyze with annotations of type JIPipeParameter

Modifier and Type	Method and Description
ExpressionTableColumnGeneratorProcessorParameterList	AnnotateByImageStatisticsExpressionAlgorithm.getAnnotations()
OptionalStringParameter	FindParticles2D.getAnnotationType()
ExpressionTableColumnGeneratorProcessorParameterList	ImageStatisticsExpressionAlgorithm.getColumns()
int	OrientationVectorField2DAlgorithm.getGridSize()
OptionalStringParameter	ImageStatisticsAlgorithm.getIndexAnnotation()
double	FindParticles2D.getMaxParticleCircularity()
double	FindParticles2D.getMaxParticleSize()
ImageStatisticsSetParameter	ImageStatisticsAlgorithm.getMeasurements()
double	FindParticles2D.getMinParticleCircularity()
double	FindParticles2D.getMinParticleSize()
Neighborhood2D	FindParticles2D.getNeighborhood()
OrientationVectorField2DAlgorithm.OutputParameters	OrientationVectorField2DAlgorithm.getOutputParameters()
AnalyzeSkeleton2D3DAlgorithm.OutputParameters	AnalyzeSkeleton2D3DAlgorithm.getOutputParameters()
AnalyzeSkeleton2D3DAlgorithm.CycleRemovalMethod	AnalyzeSkeleton2D3DAlgorithm.getPruneCyclesMethod()
AnalyzeSkeleton2D3DAlgorithm.EndRemovalMethod	AnalyzeSkeleton2D3DAlgorithm.getPruneEndsMethod()
double	OrientationVectorField2DAlgorithm.getScaleVectorPercentage()
ImageStatisticsSetParameter	FindParticles2D.getStatisticsParameters()
OrientationJStructureTensorParameters	OrientationVectorField2DAlgorithm.getStructureTensorParameters()
ImageROITargetArea	AnnotateByImageStatisticsExpressionAlgorithm.getTargetArea()
ImageROITargetArea	ImageStatisticsExpressionAlgorithm.getTargetArea()
OrientationJVectorFieldType	OrientationVectorField2DAlgorithm.getVectorFieldType()
boolean	ImageStatisticsAlgorithm.isApplyPerChannel()
boolean	ImageStatisticsExpressionAlgorithm.isApplyPerChannel()
boolean	ImageStatisticsAlgorithm.isApplyPerFrame()
boolean	ImageStatisticsExpressionAlgorithm.isApplyPerFrame()
boolean	ImageStatisticsAlgorithm.isApplyPerSlice()
boolean	ImageStatisticsExpressionAlgorithm.isApplyPerSlice()
boolean	FindParticles2D.isBlackBackground()
boolean	FindParticles2D.isCompositeROI()
boolean	FindParticles2D.isExcludeEdges()
boolean	FindParticles2D.isIncludeHoles()
boolean	FindParticles2D.isMeasureInPhysicalUnits()
boolean	ImageStatisticsAlgorithm.isMeasureInPhysicalUnits()
boolean	AnalyzeSkeleton2D3DAlgorithm.OutputParameters.isOutputBranchTable()
boolean	OrientationVectorField2DAlgorithm.OutputParameters.isOutputCoherency()
boolean	OrientationVectorField2DAlgorithm.OutputParameters.isOutputEnergy()
boolean	AnalyzeSkeleton2D3DAlgorithm.OutputParameters.isOutputLargestShortestPaths()
boolean	OrientationVectorField2DAlgorithm.OutputParameters.isOutputOrientation()
boolean	AnalyzeSkeleton2D3DAlgorithm.OutputParameters.isOutputSkeletonLabels()
boolean	AnalyzeSkeleton2D3DAlgorithm.OutputParameters.isOutputSkeletonTable()
boolean	AnalyzeSkeleton2D3DAlgorithm.OutputParameters.isOutputTaggedSkeletons()
boolean	OrientationVectorField2DAlgorithm.isRadians()
boolean	FindParticles2D.isSplitSlices()
void	AnnotateByImageStatisticsExpressionAlgorithm.setAnnotations(ExpressionTableColumnGeneratorProcessorParameterList annotations)
void	FindParticles2D.setAnnotationType(OptionalStringParameter annotationType)
void	ImageStatisticsAlgorithm.setApplyPerChannel(boolean applyPerChannel)
void	ImageStatisticsExpressionAlgorithm.setApplyPerChannel(boolean applyPerChannel)
void	ImageStatisticsAlgorithm.setApplyPerFrame(boolean applyPerFrame)
void	ImageStatisticsExpressionAlgorithm.setApplyPerFrame(boolean applyPerFrame)
void	ImageStatisticsAlgorithm.setApplyPerSlice(boolean applyPerSlice)
void	ImageStatisticsExpressionAlgorithm.setApplyPerSlice(boolean applyPerSlice)
void	FindParticles2D.setBlackBackground(boolean blackBackground)
void	ImageStatisticsExpressionAlgorithm.setColumns(ExpressionTableColumnGeneratorProcessorParameterList columns)
void	FindParticles2D.setCompositeROI(boolean compositeROI)
void	FindParticles2D.setExcludeEdges(boolean excludeEdges)
void	OrientationVectorField2DAlgorithm.setGridSize(int gridSize)
void	FindParticles2D.setIncludeHoles(boolean includeHoles)
void	ImageStatisticsAlgorithm.setIndexAnnotation(OptionalStringParameter indexAnnotation)
boolean	FindParticles2D.setMaxParticleCircularity(double maxParticleCircularity)
void	FindParticles2D.setMaxParticleSize(double maxParticleSize)
void	FindParticles2D.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	ImageStatisticsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	ImageStatisticsAlgorithm.setMeasurements(ImageStatisticsSetParameter measurements)
boolean	FindParticles2D.setMinParticleCircularity(double minParticleCircularity)
void	FindParticles2D.setMinParticleSize(double minParticleSize)
void	FindParticles2D.setNeighborhood(Neighborhood2D neighborhood)
void	AnalyzeSkeleton2D3DAlgorithm.OutputParameters.setOutputBranchTable(boolean outputBranchTable)
void	OrientationVectorField2DAlgorithm.OutputParameters.setOutputCoherency(boolean outputCoherency)
void	OrientationVectorField2DAlgorithm.OutputParameters.setOutputEnergy(boolean outputEnergy)
void	AnalyzeSkeleton2D3DAlgorithm.OutputParameters.setOutputLargestShortestPaths(boolean outputLargestShortestPaths)
void	OrientationVectorField2DAlgorithm.OutputParameters.setOutputOrientation(boolean outputOrientation)
void	AnalyzeSkeleton2D3DAlgorithm.OutputParameters.setOutputSkeletonLabels(boolean outputSkeletonLabels)
void	AnalyzeSkeleton2D3DAlgorithm.OutputParameters.setOutputSkeletonTable(boolean outputSkeletonTable)
void	AnalyzeSkeleton2D3DAlgorithm.OutputParameters.setOutputTaggedSkeletons(boolean outputTaggedSkeletons)
void	AnalyzeSkeleton2D3DAlgorithm.setPruneCyclesMethod(AnalyzeSkeleton2D3DAlgorithm.CycleRemovalMethod pruneCyclesMethod)
void	AnalyzeSkeleton2D3DAlgorithm.setPruneEndsMethod(AnalyzeSkeleton2D3DAlgorithm.EndRemovalMethod pruneEndsMethod)
void	OrientationVectorField2DAlgorithm.setRadians(boolean radians)
void	OrientationVectorField2DAlgorithm.setScaleVectorPercentage(double scaleVectorPercentage)
void	FindParticles2D.setSplitSlices(boolean splitSlices)
void	FindParticles2D.setStatisticsParameters(ImageStatisticsSetParameter statisticsParameters)
void	AnnotateByImageStatisticsExpressionAlgorithm.setTargetArea(ImageROITargetArea targetArea)
void	ImageStatisticsExpressionAlgorithm.setTargetArea(ImageROITargetArea targetArea)
void	OrientationVectorField2DAlgorithm.setVectorFieldType(OrientationJVectorFieldType vectorFieldType)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.background

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.background with annotations of type JIPipeParameter

Modifier and Type	Method and Description
RollingBallBackgroundEstimator2DAlgorithm.BackgroundType	RollingBallBackgroundEstimator2DAlgorithm.getBackgroundType()
RollingBallBackgroundEstimator2DAlgorithm.Method	RollingBallBackgroundEstimator2DAlgorithm.getMethod()
double	RollingBallBackgroundEstimator2DAlgorithm.getRadius()
boolean	RollingBallBackgroundEstimator2DAlgorithm.isCorrectCorners()
boolean	RollingBallBackgroundEstimator2DAlgorithm.isPreSmoothing()
boolean	RollingBallBackgroundEstimator2DAlgorithm.isSeparateChannels()
boolean	RollingBallBackgroundEstimator2DAlgorithm.isSubtract()
void	RollingBallBackgroundEstimator2DAlgorithm.setBackgroundType(RollingBallBackgroundEstimator2DAlgorithm.BackgroundType backgroundType)
void	RollingBallBackgroundEstimator2DAlgorithm.setCorrectCorners(boolean correctCorners)
void	RollingBallBackgroundEstimator2DAlgorithm.setMethod(RollingBallBackgroundEstimator2DAlgorithm.Method method)
void	RollingBallBackgroundEstimator2DAlgorithm.setPreSmoothing(boolean preSmoothing)
boolean	RollingBallBackgroundEstimator2DAlgorithm.setRadius(double radius)
void	RollingBallBackgroundEstimator2DAlgorithm.setSeparateChannels(boolean separateChannels)
void	RollingBallBackgroundEstimator2DAlgorithm.setSubtract(boolean subtract)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.binary

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.binary with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeExpressionParameter	ConditionalInverterAlgorithm.getCondition()
Neighborhood3D	ConnectedComponentsLabeling3DAlgorithm.getConnectivity()
Neighborhood2D	ConnectedComponentsLabeling2DAlgorithm.getConnectivity()
int	RemoveLargestRegionAlgorithm.getIterations()
LogicalOperation	BitwiseLogicalOperationAlgorithm.getLogicalOperation()
int	VolumeOpening3DAlgorithm.getMinPixels()
int	VolumeOpening2DAlgorithm.getMinPixels()
JIPipeDataInfoRef	ConnectedComponentsLabeling3DAlgorithm.getOutputType()
JIPipeDataInfoRef	ConnectedComponentsLabeling2DAlgorithm.getOutputType()
boolean	ConditionalInverterAlgorithm.isApplyPerSlice()
boolean	Voronoi2DAlgorithm.isBinarize()
void	ConditionalInverterAlgorithm.setApplyPerSlice(boolean applyPerSlice)
void	Voronoi2DAlgorithm.setBinarize(boolean binarize)
void	ConditionalInverterAlgorithm.setCondition(JIPipeExpressionParameter condition)
void	ConnectedComponentsLabeling2DAlgorithm.setConnectivity(Neighborhood2D connectivity)
void	ConnectedComponentsLabeling3DAlgorithm.setConnectivity(Neighborhood3D connectivity)
void	RemoveLargestRegionAlgorithm.setIterations(int iterations)
void	BitwiseLogicalOperationAlgorithm.setLogicalOperation(LogicalOperation logicalOperation)
void	VolumeOpening3DAlgorithm.setMinPixels(int minPixels)
void	VolumeOpening2DAlgorithm.setMinPixels(int minPixels)
void	ConnectedComponentsLabeling3DAlgorithm.setOutputType(JIPipeDataInfoRef outputType)
void	ConnectedComponentsLabeling2DAlgorithm.setOutputType(JIPipeDataInfoRef outputType)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.blur

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.blur with annotations of type JIPipeParameter

Modifier and Type	Method and Description
double	MedianBlurFilter2DAlgorithm.getRadius()
float	BoxFilter3DAlgorithm.getRadiusX()
float	MedianBlurFilter3DAlgorithm.getRadiusX()
float	BoxFilter3DAlgorithm.getRadiusY()
float	MedianBlurFilter3DAlgorithm.getRadiusY()
float	BoxFilter3DAlgorithm.getRadiusZ()
float	MedianBlurFilter3DAlgorithm.getRadiusZ()
double	GaussianBlur2DAlgorithm.getSigmaX()
double	GaussianBlur3DAlgorithm.getSigmaX()
double	GaussianBlur2DAlgorithm.getSigmaY()
double	GaussianBlur3DAlgorithm.getSigmaY()
double	GaussianBlur3DAlgorithm.getSigmaZ()
boolean	MedianBlurFilter2DAlgorithm.setRadius(double radius)
void	BoxFilter3DAlgorithm.setRadiusX(float radiusX)
void	MedianBlurFilter3DAlgorithm.setRadiusX(float radiusX)
void	BoxFilter3DAlgorithm.setRadiusY(float radiusY)
void	MedianBlurFilter3DAlgorithm.setRadiusY(float radiusY)
void	BoxFilter3DAlgorithm.setRadiusZ(float radiusZ)
void	MedianBlurFilter3DAlgorithm.setRadiusZ(float radiusZ)
void	GaussianBlur2DAlgorithm.setSigmaX(double sigmaX)
void	GaussianBlur3DAlgorithm.setSigmaX(double sigmaX)
void	GaussianBlur2DAlgorithm.setSigmaY(double sigmaY)
void	GaussianBlur3DAlgorithm.setSigmaY(double sigmaY)
void	GaussianBlur3DAlgorithm.setSigmaZ(double sigmaZ)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.calibration

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.calibration with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalColorParameter	DrawScaleBarAlgorithm.getBackgroundColor()
Color	DrawScaleBarAlgorithm.getBarColor()
int	DrawScaleBarAlgorithm.getBarThickness()
FontFamilyParameter	DrawScaleBarAlgorithm.TextSettings.getFontFamily()
int	DrawScaleBarAlgorithm.TextSettings.getFontSize()
FontStyleParameter	DrawScaleBarAlgorithm.TextSettings.getFontStyle()
OptionalQuantity	DrawScaleBarAlgorithm.getHorizontalBarSize()
JIPipeExpressionParameter	DrawScaleBarAlgorithm.TextSettings.getHorizontalLabel()
ScaleBarGenerator.ScaleBarPosition	DrawScaleBarAlgorithm.getLocation()
OptionalJIPipeExpressionParameter	SetPhysicalDimensionsByExpressionsAlgorithm.getPhysicalDimensionT()
OptionalTextAnnotationNameParameter	SetPhysicalDimensionsByAnnotationsAlgorithm.getPhysicalDimensionT()
OptionalQuantity	SetPhysicalDimensionsAlgorithm.getPhysicalDimensionT()
OptionalJIPipeExpressionParameter	SetPhysicalDimensionsByExpressionsAlgorithm.getPhysicalDimensionValue()
OptionalTextAnnotationNameParameter	SetPhysicalDimensionsByAnnotationsAlgorithm.getPhysicalDimensionValue()
OptionalQuantity	SetPhysicalDimensionsAlgorithm.getPhysicalDimensionValue()
OptionalJIPipeExpressionParameter	SetPhysicalDimensionsByExpressionsAlgorithm.getPhysicalDimensionX()
OptionalTextAnnotationNameParameter	SetPhysicalDimensionsByAnnotationsAlgorithm.getPhysicalDimensionX()
OptionalQuantity	SetPhysicalDimensionsAlgorithm.getPhysicalDimensionX()
OptionalJIPipeExpressionParameter	SetPhysicalDimensionsByExpressionsAlgorithm.getPhysicalDimensionY()
OptionalTextAnnotationNameParameter	SetPhysicalDimensionsByAnnotationsAlgorithm.getPhysicalDimensionY()
OptionalQuantity	SetPhysicalDimensionsAlgorithm.getPhysicalDimensionY()
OptionalJIPipeExpressionParameter	SetPhysicalDimensionsByExpressionsAlgorithm.getPhysicalDimensionZ()
OptionalTextAnnotationNameParameter	SetPhysicalDimensionsByAnnotationsAlgorithm.getPhysicalDimensionZ()
OptionalQuantity	SetPhysicalDimensionsAlgorithm.getPhysicalDimensionZ()
Color	DrawScaleBarAlgorithm.TextSettings.getTextColor()
DrawScaleBarAlgorithm.TextSettings	DrawScaleBarAlgorithm.getTextSettings()
OptionalQuantity	DrawScaleBarAlgorithm.getVerticalBarSize()
JIPipeExpressionParameter	DrawScaleBarAlgorithm.TextSettings.getVerticalLabel()
boolean	DrawScaleBarAlgorithm.isDrawHorizontal()
boolean	DrawScaleBarAlgorithm.isDrawVertical()
boolean	DrawScaleBarAlgorithm.TextSettings.isHideLabels()
void	DrawScaleBarAlgorithm.setBackgroundColor(OptionalColorParameter backgroundColor)
void	DrawScaleBarAlgorithm.setBarColor(Color barColor)
void	DrawScaleBarAlgorithm.setBarThickness(int barThickness)
void	DrawScaleBarAlgorithm.setDrawHorizontal(boolean drawHorizontal)
void	DrawScaleBarAlgorithm.setDrawVertical(boolean drawVertical)
void	DrawScaleBarAlgorithm.TextSettings.setFontFamily(FontFamilyParameter fontFamily)
void	DrawScaleBarAlgorithm.TextSettings.setFontSize(int fontSize)
void	DrawScaleBarAlgorithm.TextSettings.setFontStyle(FontStyleParameter fontStyle)
void	DrawScaleBarAlgorithm.TextSettings.setHideLabels(boolean hideLabels)
void	DrawScaleBarAlgorithm.setHorizontalBarSize(OptionalQuantity horizontalBarSize)
void	DrawScaleBarAlgorithm.TextSettings.setHorizontalLabel(JIPipeExpressionParameter horizontalLabel)
void	DrawScaleBarAlgorithm.setLocation(ScaleBarGenerator.ScaleBarPosition location)
void	SetPhysicalDimensionsByExpressionsAlgorithm.setPhysicalDimensionT(OptionalJIPipeExpressionParameter physicalDimensionT)
void	SetPhysicalDimensionsAlgorithm.setPhysicalDimensionT(OptionalQuantity physicalDimensionT)
void	SetPhysicalDimensionsByAnnotationsAlgorithm.setPhysicalDimensionT(OptionalTextAnnotationNameParameter physicalDimensionT)
void	SetPhysicalDimensionsByExpressionsAlgorithm.setPhysicalDimensionValue(OptionalJIPipeExpressionParameter physicalDimensionValue)
void	SetPhysicalDimensionsAlgorithm.setPhysicalDimensionValue(OptionalQuantity physicalDimensionValue)
void	SetPhysicalDimensionsByAnnotationsAlgorithm.setPhysicalDimensionValue(OptionalTextAnnotationNameParameter physicalDimensionValue)
void	SetPhysicalDimensionsByExpressionsAlgorithm.setPhysicalDimensionX(OptionalJIPipeExpressionParameter physicalDimensionX)
void	SetPhysicalDimensionsAlgorithm.setPhysicalDimensionX(OptionalQuantity physicalDimensionX)
void	SetPhysicalDimensionsByAnnotationsAlgorithm.setPhysicalDimensionX(OptionalTextAnnotationNameParameter physicalDimensionX)
void	SetPhysicalDimensionsByExpressionsAlgorithm.setPhysicalDimensionY(OptionalJIPipeExpressionParameter physicalDimensionY)
void	SetPhysicalDimensionsAlgorithm.setPhysicalDimensionY(OptionalQuantity physicalDimensionY)
void	SetPhysicalDimensionsByAnnotationsAlgorithm.setPhysicalDimensionY(OptionalTextAnnotationNameParameter physicalDimensionY)
void	SetPhysicalDimensionsByExpressionsAlgorithm.setPhysicalDimensionZ(OptionalJIPipeExpressionParameter physicalDimensionZ)
void	SetPhysicalDimensionsAlgorithm.setPhysicalDimensionZ(OptionalQuantity physicalDimensionZ)
void	SetPhysicalDimensionsByAnnotationsAlgorithm.setPhysicalDimensionZ(OptionalTextAnnotationNameParameter physicalDimensionZ)
void	DrawScaleBarAlgorithm.TextSettings.setTextColor(Color textColor)
void	DrawScaleBarAlgorithm.setVerticalBarSize(OptionalQuantity verticalBarSize)
void	DrawScaleBarAlgorithm.TextSettings.setVerticalLabel(JIPipeExpressionParameter verticalLabel)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.colocalization

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.colocalization with annotations of type JIPipeParameter

Modifier and Type	Method and Description
String	Coloc2Node.getChannel1Name()
String	Coloc2Node.getChannel2Name()
int	Coloc2Node.Settings.getCostesRandomizations()
OptionalTextAnnotationNameParameter	Coloc2Node.getHistogramNameAnnotation()
OptionalTextAnnotationNameParameter	Coloc2Node.getPlotNameAnnotation()
int	Coloc2Node.Settings.getPsf()
Coloc2Node.Settings	Coloc2Node.getSettings()
sc.fiji.coloc.algorithms.AutoThresholdRegression.Implementation	Coloc2Node.Settings.getThresholdRegression()
boolean	Coloc2Node.Settings.isCostesSignificanceTest()
boolean	Coloc2Node.isInputMasks()
boolean	Coloc2Node.Settings.isIntensityHistogram2D()
boolean	Coloc2Node.Settings.isKendallTauRankCorrelation()
boolean	Coloc2Node.Settings.isLiHistogramChannel1()
boolean	Coloc2Node.Settings.isLiHistogramChannel2()
boolean	Coloc2Node.Settings.isLiICQ()
boolean	Coloc2Node.Settings.isMandersCorrelation()
boolean	Coloc2Node.isOutputWarnings()
boolean	Coloc2Node.Settings.isSpearmanRankCorrelation()
void	Coloc2Node.setChannel1Name(String channel1Name)
void	Coloc2Node.setChannel2Name(String channel2Name)
void	Coloc2Node.Settings.setCostesRandomizations(int costesRandomizations)
void	Coloc2Node.Settings.setCostesSignificanceTest(boolean costesSignificanceTest)
void	Coloc2Node.setHistogramNameAnnotation(OptionalTextAnnotationNameParameter histogramNameAnnotation)
void	Coloc2Node.setInputMasks(boolean inputMasks)
void	Coloc2Node.Settings.setIntensityHistogram2D(boolean intensityHistogram2D)
void	Coloc2Node.Settings.setKendallTauRankCorrelation(boolean kendallTauRankCorrelation)
void	Coloc2Node.Settings.setLiHistogramChannel1(boolean liHistogramChannel1)
void	Coloc2Node.Settings.setLiHistogramChannel2(boolean liHistogramChannel2)
void	Coloc2Node.Settings.setLiICQ(boolean liICQ)
void	Coloc2Node.Settings.setMandersCorrelation(boolean mandersCorrelation)
void	Coloc2Node.setOutputWarnings(boolean outputWarnings)
void	Coloc2Node.setPlotNameAnnotation(OptionalTextAnnotationNameParameter plotNameAnnotation)
void	Coloc2Node.Settings.setPsf(int psf)
void	Coloc2Node.Settings.setSpearmanRankCorrelation(boolean spearmanRankCorrelation)
void	Coloc2Node.Settings.setThresholdRegression(sc.fiji.coloc.algorithms.AutoThresholdRegression.Implementation thresholdRegression)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.color

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.color with annotations of type JIPipeParameter

Modifier and Type	Method and Description
String	SplitChannelsAlgorithm.getAnnotationColumnChannelIndex() Deprecated.
JIPipeExpressionParameter	SplitChannelsByTableAlgorithm.getAnnotationColumnFilter()
String	SplitChannelsAlgorithm.getAnnotationColumnSlotName() Deprecated.
InputSlotMapParameterCollection	MergeChannelsAlgorithm.getChannelColorAssignment()
InputSlotMapParameterCollection	OverlayImagesAlgorithm.getChannelColorAssignment() Deprecated.
JIPipeExpressionParameter	SplitChannelsByTableAlgorithm.getChannelColumnFilter()
OptionalTextAnnotationNameParameter	NewSplitChannelsAlgorithm.getChannelIndexAnnotation()
OptionalTextAnnotationNameParameter	SplitChannelsByTableAlgorithm.getChannelIndexAnnotation()
OptionalTextAnnotationNameParameter	NewSplitChannelsAlgorithm.getChannelNameAnnotation()
OptionalTextAnnotationNameParameter	SplitChannelsByTableAlgorithm.getChannelNameAnnotation()
IntegerAndIntegerPairParameter.List	ArrangeChannelsAlgorithm.getChannelReordering()
OutputSlotMapParameterCollection	NewSplitChannelsAlgorithm.getChannelToSlotAssignment()
OutputSlotMapParameterCollection	SplitChannelsAlgorithm.getChannelToSlotAssignment() Deprecated.
Color	OverlayImagesAlgorithm.Channel.getColor()
JIPipeExpressionParameter	ColorToGreyscaleExpression2D.getExpression()
InputSlotMapParameterCollection	BlendImagesAlgorithm.getLayers()
double	OverlayImagesAlgorithm.Channel.getOpacity()
JIPipeDataInfoRef	ColorToGreyscaleExpression2D.getOutputType()
boolean	SplitChannelsAlgorithm.isAnnotateWithChannelIndex() Deprecated.
boolean	SplitChannelsAlgorithm.isAnnotateWithSlotName() Deprecated.
boolean	OverlayImagesAlgorithm.Channel.isBlackToAlpha()
boolean	MergeChannelsAlgorithm.isCreateComposite()
boolean	SplitChannelsByTableAlgorithm.isIgnoreAnnotationColumnsOnTrivialMatch()
boolean	NewSplitChannelsAlgorithm.isIgnoreMissingChannels()
boolean	SplitChannelsAlgorithm.isIgnoreMissingChannels() Deprecated.
boolean	SplitChannelsByTableAlgorithm.isIgnoreMissingChannels()
boolean	SplitChannelsByTableAlgorithm.isIgnoreMissingImages()
boolean	SplitChannelsByTableAlgorithm.isIgnoreMissingOutputs()
boolean	ArrangeChannelsAlgorithm.isKeepSameChannelCount()
boolean	BlendImagesAlgorithm.isRenderGreyscaleImages()
void	SplitChannelsAlgorithm.setAnnotateWithChannelIndex(boolean annotateWithChannelIndex) Deprecated.
void	SplitChannelsAlgorithm.setAnnotateWithSlotName(boolean annotateWithSlotName) Deprecated.
void	SplitChannelsAlgorithm.setAnnotationColumnChannelIndex(String annotationColumnChannelIndex) Deprecated.
void	SplitChannelsByTableAlgorithm.setAnnotationColumnFilter(JIPipeExpressionParameter annotationColumnFilter)
void	SplitChannelsAlgorithm.setAnnotationColumnSlotName(String annotationColumnSlotName) Deprecated.
void	OverlayImagesAlgorithm.Channel.setBlackToAlpha(boolean blackToAlpha)
void	SplitChannelsByTableAlgorithm.setChannelColumnFilter(JIPipeExpressionParameter channelColumnFilter)
void	NewSplitChannelsAlgorithm.setChannelIndexAnnotation(OptionalTextAnnotationNameParameter channelIndexAnnotation)
void	SplitChannelsByTableAlgorithm.setChannelIndexAnnotation(OptionalTextAnnotationNameParameter channelIndexAnnotation)
void	NewSplitChannelsAlgorithm.setChannelNameAnnotation(OptionalTextAnnotationNameParameter channelNameAnnotation)
void	SplitChannelsByTableAlgorithm.setChannelNameAnnotation(OptionalTextAnnotationNameParameter channelNameAnnotation)
void	ArrangeChannelsAlgorithm.setChannelReordering(IntegerAndIntegerPairParameter.List channelReordering)
void	OverlayImagesAlgorithm.Channel.setColor(Color color)
void	MergeChannelsAlgorithm.setCreateComposite(boolean createComposite)
void	ColorToGreyscaleExpression2D.setExpression(JIPipeExpressionParameter expression)
void	SplitChannelsByTableAlgorithm.setIgnoreAnnotationColumnsOnTrivialMatch(boolean ignoreAnnotationColumnsOnTrivialMatch)
void	NewSplitChannelsAlgorithm.setIgnoreMissingChannels(boolean ignoreMissingChannels)
void	SplitChannelsAlgorithm.setIgnoreMissingChannels(boolean ignoreMissingChannels) Deprecated.
void	SplitChannelsByTableAlgorithm.setIgnoreMissingChannels(boolean ignoreMissingChannels)
void	SplitChannelsByTableAlgorithm.setIgnoreMissingImages(boolean ignoreMissingImages)
void	SplitChannelsByTableAlgorithm.setIgnoreMissingOutputs(boolean ignoreMissingOutputs)
void	ArrangeChannelsAlgorithm.setKeepSameChannelCount(boolean keepSameChannelCount)
void	OverlayImagesAlgorithm.Channel.setOpacity(double opacity)
void	ColorToGreyscaleExpression2D.setOutputType(JIPipeDataInfoRef outputType)
void	BlendImagesAlgorithm.setRenderGreyscaleImages(boolean renderGreyscaleImages)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.contrast

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.contrast with annotations of type JIPipeParameter

Modifier and Type	Method and Description
int	CLAHEContrastEnhancer.getBins()
int	CLAHEContrastEnhancer.getBlockRadius()
ImageJCalibrationMode	ImageJContrastEnhancerAlgorithm.getCalibrationMode()
Vector2dParameter	ImageJContrastEnhancerAlgorithm.getCustomRange()
GaussianBlur2DAlgorithm	IlluminationCorrection2DAlgorithm.getGaussianAlgorithm()
float	CLAHEContrastEnhancer.getMaxSlope()
HistogramContrastEnhancerAlgorithm.Method	HistogramContrastEnhancerAlgorithm.getMethod()
double	HistogramContrastEnhancerAlgorithm.getSaturatedPixels()
boolean	CLAHEContrastEnhancer.isFastMode()
boolean	ImageJContrastEnhancerAlgorithm.isStretchHistogram()
boolean	HistogramContrastEnhancerAlgorithm.isUseStackHistogram()
void	CLAHEContrastEnhancer.setBins(int bins)
void	CLAHEContrastEnhancer.setBlockRadius(int blockRadius)
void	ImageJContrastEnhancerAlgorithm.setCalibrationMode(ImageJCalibrationMode calibrationMode)
void	ImageJContrastEnhancerAlgorithm.setCustomRange(Vector2dParameter customRange)
void	CLAHEContrastEnhancer.setFastMode(boolean fastMode)
void	CLAHEContrastEnhancer.setMaxSlope(float maxSlope)
void	HistogramContrastEnhancerAlgorithm.setMethod(HistogramContrastEnhancerAlgorithm.Method method)
boolean	HistogramContrastEnhancerAlgorithm.setSaturatedPixels(double saturatedPixels)
void	ImageJContrastEnhancerAlgorithm.setStretchHistogram(boolean stretchHistogram)
void	HistogramContrastEnhancerAlgorithm.setUseStackHistogram(boolean useStackHistogram)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.convert

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.convert with annotations of type JIPipeParameter

Modifier and Type	Method and Description
ImageJCalibrationMode	ConvertImageTo16BitAutoContrastAlgorithm.getCalibrationMode()
ImageJCalibrationMode	ConvertImageTo8BitAutoContrastAlgorithm.getCalibrationMode()
JIPipeDynamicParameterCollection	TableToImageAlgorithm.getColumnAssignment()
OptionalIntegerParameter	TableToImageAlgorithm.getCustomHeight()
Vector2dParameter	ConvertImageTo16BitAutoContrastAlgorithm.getCustomRange()
Vector2dParameter	ConvertImageTo8BitAutoContrastAlgorithm.getCustomRange()
OptionalIntegerParameter	TableToImageAlgorithm.getCustomSizeC()
OptionalIntegerParameter	TableToImageAlgorithm.getCustomSizeT()
OptionalIntegerParameter	TableToImageAlgorithm.getCustomSizeZ()
OptionalIntegerParameter	TableToImageAlgorithm.getCustomWidth()
JIPipeDataInfoRef	ConvertImageAlgorithm.getGeneratedImageType()
JIPipeDataInfoRef	MatrixToImageAlgorithm.getOutputImageType()
JIPipeDataInfoRef	TableToImageAlgorithm.getOutputImageType()
TableColumnSourceExpressionParameter	TableColumnToImageAlgorithm.getSelectedColumn()
String	ImageToTableAlgorithm.getSliceAnnotation()
String	MultipleImagesToTableAlgorithm.getSliceAnnotation()
String	ImageToTableColumnAlgorithm.getTargetColumnName()
boolean	ImageToTableAlgorithm.isApplyPerSlice()
boolean	MultipleImagesToTableAlgorithm.isApplyPerSlice()
boolean	ConvertImageTo16BitAutoContrastAlgorithm.isStretchHistogram()
boolean	ConvertImageTo8BitAutoContrastAlgorithm.isStretchHistogram()
void	ImageToTableAlgorithm.setApplyPerSlice(boolean applyPerSlice)
void	MultipleImagesToTableAlgorithm.setApplyPerSlice(boolean applyPerSlice)
void	ConvertImageTo16BitAutoContrastAlgorithm.setCalibrationMode(ImageJCalibrationMode calibrationMode)
void	ConvertImageTo8BitAutoContrastAlgorithm.setCalibrationMode(ImageJCalibrationMode calibrationMode)
void	TableToImageAlgorithm.setCustomHeight(OptionalIntegerParameter customHeight)
void	ConvertImageTo16BitAutoContrastAlgorithm.setCustomRange(Vector2dParameter customRange)
void	ConvertImageTo8BitAutoContrastAlgorithm.setCustomRange(Vector2dParameter customRange)
void	TableToImageAlgorithm.setCustomSizeC(OptionalIntegerParameter customSizeC)
void	TableToImageAlgorithm.setCustomSizeT(OptionalIntegerParameter customSizeT)
void	TableToImageAlgorithm.setCustomSizeZ(OptionalIntegerParameter customSizeZ)
void	TableToImageAlgorithm.setCustomWidth(OptionalIntegerParameter customWidth)
void	ConvertImageAlgorithm.setGeneratedImageType(JIPipeDataInfoRef generatedImageType)
void	MatrixToImageAlgorithm.setOutputImageType(JIPipeDataInfoRef outputImageType)
void	TableToImageAlgorithm.setOutputImageType(JIPipeDataInfoRef outputImageType)
void	TableColumnToImageAlgorithm.setSelectedColumn(TableColumnSourceExpressionParameter selectedColumn)
void	ImageToTableAlgorithm.setSliceAnnotation(String sliceAnnotation)
void	MultipleImagesToTableAlgorithm.setSliceAnnotation(String sliceAnnotation)
void	ConvertImageTo16BitAutoContrastAlgorithm.setStretchHistogram(boolean stretchHistogram)
void	ConvertImageTo8BitAutoContrastAlgorithm.setStretchHistogram(boolean stretchHistogram)
void	ImageToTableColumnAlgorithm.setTargetColumnName(String targetColumnName)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.convolve

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.convolve with annotations of type JIPipeParameter

Modifier and Type	Method and Description
Matrix2DFloat	ConvolveByParameter2DAlgorithm.getMatrix()
boolean	ConvolveByParameter2DAlgorithm.isNormalize()
boolean	ConvolveByImage2DAlgorithm.isNormalize()
void	ConvolveByParameter2DAlgorithm.setMatrix(Matrix2DFloat matrix)
void	ConvolveByParameter2DAlgorithm.setNormalize(boolean normalize)
void	ConvolveByImage2DAlgorithm.setNormalize(boolean normalize)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.datasources

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.datasources with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OMEExporterSettings	OMEImageFromImagePlus.getExporterSettings()
PathQueryExpression	ImageStackFromFolder.getFilterExpression()
JIPipeDataInfoRef	ImageStackFromFolder.getGeneratedImageType()
HyperstackDimension	ImageStackFromFolder.getOutputDimension()
IntegerRange	ImageStackFromFolder.getSlicesToImport()
boolean	ImageStackFromFolder.isForceNativeImport()
boolean	ImageStackFromFolder.isIgnoreInvalidSlices()
boolean	ImageStackFromFolder.isRemoveLut()
boolean	ImageStackFromFolder.isSortFilesNumerically()
void	ImageStackFromFolder.setFilterExpression(PathQueryExpression filterExpression)
void	ImageStackFromFolder.setForceNativeImport(boolean forceNativeImport)
void	ImageStackFromFolder.setGeneratedImageType(JIPipeDataInfoRef generatedImageType)
void	ImageStackFromFolder.setIgnoreInvalidSlices(boolean ignoreInvalidSlices)
void	ImageStackFromFolder.setOutputDimension(HyperstackDimension outputDimension)
void	ImageStackFromFolder.setRemoveLut(boolean removeLut)
void	ImageStackFromFolder.setSlicesToImport(IntegerRange slicesToImport)
void	ImageStackFromFolder.setSortFilesNumerically(boolean sortFilesNumerically)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.detect

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.detect with annotations of type JIPipeParameter

Modifier and Type	Method and Description
int	LinesHoughDetection2DAlgorithm.getAccumulatorThreshold()
int	CircularHoughSegmentation2DAlgorithm.getBandwidth()
double	LineSegmentsHoughDetection2DAlgorithm.getFillGap()
double	CornerHarris2DAlgorithm.getHarrisK()
int	CornerHarris2DAlgorithm.getHarrisL()
OptionalJIPipeExpressionParameter	LineSegmentsHoughDetection2DAlgorithm.getHoughArrayNMSNeighborhoodSize()
OptionalJIPipeExpressionParameter	GlobalLinesHoughDetection2DAlgorithm.getHoughArrayNMSNeighborhoodSize()
int	LineSegmentsHoughDetection2DAlgorithm.getInputNMSNeighborhoodSize()
int	GlobalLinesHoughDetection2DAlgorithm.getInputNMSNeighborhoodSize()
int	CircularHoughSegmentation2DAlgorithm.getLocalRadius()
int	CircularHoughSegmentation2DAlgorithm.getMaxNumCircles()
int	FastCircularHoughSegmentation2DAlgorithm.getMaxRadius()
int	CircularHoughSegmentation2DAlgorithm.getMaxRadius()
int	LinesHoughDetection2DAlgorithm.getMaxTheta()
double	LineSegmentsHoughDetection2DAlgorithm.getMinLength()
double	GlobalLinesHoughDetection2DAlgorithm.getMinLength()
double	CornerHarris2DAlgorithm.getMinLevel()
int	CircularHoughSegmentation2DAlgorithm.getMinNumCircles()
int	FastCircularHoughSegmentation2DAlgorithm.getMinRadius()
int	CircularHoughSegmentation2DAlgorithm.getMinRadius()
double	FastCircularHoughSegmentation2DAlgorithm.getMinScore()
int	LinesHoughDetection2DAlgorithm.getNeighborhoodSize()
HoughLinesNMSAlgorithm	LineSegmentsHoughDetection2DAlgorithm.getNmsAlgorithm()
HoughLinesNMSAlgorithm	GlobalLinesHoughDetection2DAlgorithm.getNmsAlgorithm()
int	LineSegmentsHoughDetection2DAlgorithm.getNumPeaks()
int	GlobalLinesHoughDetection2DAlgorithm.getNumPeaks()
CornerHarris2DAlgorithm.OutputParameters	CornerHarris2DAlgorithm.getOutputParameters()
JIPipeExpressionParameter	LineSegmentsHoughDetection2DAlgorithm.getPeakThreshold()
JIPipeExpressionParameter	GlobalLinesHoughDetection2DAlgorithm.getPeakThreshold()
OptionalFloatParameter	LinesHoughDetection2DAlgorithm.getPixelThreshold()
int	CircularHoughSegmentation2DAlgorithm.getRadiusIncrement()
double	CircularHoughSegmentation2DAlgorithm.getRatio()
int	CircularHoughSegmentation2DAlgorithm.getResolution()
JIPipeExpressionParameter	LineSegmentsHoughDetection2DAlgorithm.getRoiNameExpression()
JIPipeExpressionParameter	GlobalLinesHoughDetection2DAlgorithm.getRoiNameExpression()
JIPipeExpressionParameter	LinesHoughDetection2DAlgorithm.getRoiNameExpression()
OptionalIntegerParameter	LinesHoughDetection2DAlgorithm.getSelectTopN()
OrientationJStructureTensorParameters	CornerHarris2DAlgorithm.getStructureTensorParameters()
JIPipeExpressionParameter	LineSegmentsHoughDetection2DAlgorithm.getThetas()
JIPipeExpressionParameter	GlobalLinesHoughDetection2DAlgorithm.getThetas()
double	CircularHoughSegmentation2DAlgorithm.getThreshold()
boolean	LineSegmentsHoughDetection2DAlgorithm.isFastSegmentDetection()
boolean	CircularHoughSegmentation2DAlgorithm.isLocal()
boolean	CornerHarris2DAlgorithm.OutputParameters.isOutputCoherency()
boolean	CornerHarris2DAlgorithm.OutputParameters.isOutputEnergy()
boolean	CornerHarris2DAlgorithm.OutputParameters.isOutputHarrisIndex()
boolean	CornerHarris2DAlgorithm.OutputParameters.isOutputOrientation()
boolean	CornerHarris2DAlgorithm.isRadians()
void	LinesHoughDetection2DAlgorithm.setAccumulatorThreshold(int accumulatorThreshold)
void	CircularHoughSegmentation2DAlgorithm.setBandwidth(int bandwidth)
void	LineSegmentsHoughDetection2DAlgorithm.setFastSegmentDetection(boolean fastSegmentDetection)
void	LineSegmentsHoughDetection2DAlgorithm.setFillGap(double fillGap)
void	CornerHarris2DAlgorithm.setHarrisK(double harrisK)
void	CornerHarris2DAlgorithm.setHarrisL(int harrisL)
void	LineSegmentsHoughDetection2DAlgorithm.setHoughArrayNMSNeighborhoodSize(OptionalJIPipeExpressionParameter houghArrayNMSNeighborhoodSize)
void	GlobalLinesHoughDetection2DAlgorithm.setHoughArrayNMSNeighborhoodSize(OptionalJIPipeExpressionParameter houghArrayNMSNeighborhoodSize)
void	LineSegmentsHoughDetection2DAlgorithm.setInputNMSNeighborhoodSize(int inputNMSNeighborhoodSize)
void	GlobalLinesHoughDetection2DAlgorithm.setInputNMSNeighborhoodSize(int inputNMSNeighborhoodSize)
void	CircularHoughSegmentation2DAlgorithm.setLocal(boolean local)
void	CircularHoughSegmentation2DAlgorithm.setLocalRadius(int localRadius)
void	CircularHoughSegmentation2DAlgorithm.setMaxNumCircles(int maxNumCircles)
void	FastCircularHoughSegmentation2DAlgorithm.setMaxRadius(int maxRadius)
void	CircularHoughSegmentation2DAlgorithm.setMaxRadius(int maxRadius)
void	LinesHoughDetection2DAlgorithm.setMaxTheta(int maxTheta)
void	LineSegmentsHoughDetection2DAlgorithm.setMinLength(double minLength)
void	GlobalLinesHoughDetection2DAlgorithm.setMinLength(double minLength)
void	CornerHarris2DAlgorithm.setMinLevel(double minLevel)
void	CircularHoughSegmentation2DAlgorithm.setMinNumCircles(int minNumCircles)
void	FastCircularHoughSegmentation2DAlgorithm.setMinRadius(int minRadius)
void	CircularHoughSegmentation2DAlgorithm.setMinRadius(int minRadius)
void	FastCircularHoughSegmentation2DAlgorithm.setMinScore(double minScore)
void	LinesHoughDetection2DAlgorithm.setNeighborhoodSize(int neighborhoodSize)
void	LineSegmentsHoughDetection2DAlgorithm.setNmsAlgorithm(HoughLinesNMSAlgorithm nmsAlgorithm)
void	GlobalLinesHoughDetection2DAlgorithm.setNmsAlgorithm(HoughLinesNMSAlgorithm nmsAlgorithm)
void	LineSegmentsHoughDetection2DAlgorithm.setNumPeaks(int numPeaks)
void	GlobalLinesHoughDetection2DAlgorithm.setNumPeaks(int numPeaks)
void	CornerHarris2DAlgorithm.OutputParameters.setOutputCoherency(boolean outputCoherency)
void	CornerHarris2DAlgorithm.OutputParameters.setOutputEnergy(boolean outputEnergy)
void	CornerHarris2DAlgorithm.OutputParameters.setOutputHarrisIndex(boolean outputHarrisIndex)
void	CornerHarris2DAlgorithm.OutputParameters.setOutputOrientation(boolean outputOrientation)
void	LineSegmentsHoughDetection2DAlgorithm.setPeakThreshold(JIPipeExpressionParameter peakThreshold)
void	GlobalLinesHoughDetection2DAlgorithm.setPeakThreshold(JIPipeExpressionParameter peakThreshold)
void	LinesHoughDetection2DAlgorithm.setPixelThreshold(OptionalFloatParameter pixelThreshold)
void	CornerHarris2DAlgorithm.setRadians(boolean radians)
void	CircularHoughSegmentation2DAlgorithm.setRadiusIncrement(int radiusIncrement)
void	CircularHoughSegmentation2DAlgorithm.setRatio(double ratio)
void	CircularHoughSegmentation2DAlgorithm.setResolution(int resolution)
void	LineSegmentsHoughDetection2DAlgorithm.setRoiNameExpression(JIPipeExpressionParameter roiNameExpression)
void	GlobalLinesHoughDetection2DAlgorithm.setRoiNameExpression(JIPipeExpressionParameter roiNameExpression)
void	LinesHoughDetection2DAlgorithm.setRoiNameExpression(JIPipeExpressionParameter roiNameExpression)
void	LinesHoughDetection2DAlgorithm.setSelectTopN(OptionalIntegerParameter selectTopN)
void	LineSegmentsHoughDetection2DAlgorithm.setThetas(JIPipeExpressionParameter thetas)
void	GlobalLinesHoughDetection2DAlgorithm.setThetas(JIPipeExpressionParameter thetas)
void	CircularHoughSegmentation2DAlgorithm.setThreshold(double threshold)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.dimensions

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.dimensions with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalTextAnnotationNameParameter	ExpressionSlicerAlgorithm.getAnnotateC()
OptionalTextAnnotationNameParameter	HyperstackSlicerAlgorithm.getAnnotateC()
OptionalTextAnnotationNameParameter	ExpressionSlicerAlgorithm.getAnnotateT()
OptionalTextAnnotationNameParameter	HyperstackSlicerAlgorithm.getAnnotateT()
OptionalTextAnnotationNameParameter	ExpressionSlicerAlgorithm.getAnnotateZ()
OptionalTextAnnotationNameParameter	HyperstackSlicerAlgorithm.getAnnotateZ()
OptionalTextAnnotationNameParameter	StackTo2DAlgorithm.getAnnotationC()
OptionalTextAnnotationNameParameter	StackTo2DAlgorithm.getAnnotationIndex()
JIPipeTextAnnotationMergeMode	SplitByDimensionAlgorithm.getAnnotationMergeStrategy()
OptionalTextAnnotationNameParameter	StackTo2DAlgorithm.getAnnotationT()
String	StackSplitterAlgorithm.getAnnotationType()
OptionalTextAnnotationNameParameter	StackTo2DAlgorithm.getAnnotationZ()
String	CreateStackAlgorithm.getCounterAnnotation()
HyperstackDimension	StackToDimensionMergerAlgorithm.getCreatedDimension()
HyperstackDimension	StackToDimensionMerger2Algorithm.getCreatedDimension()
JIPipeExpressionParameter	ExpressionSlicerAlgorithm.getExpressionC()
JIPipeExpressionParameter	ExpressionSlicerAlgorithm.getExpressionT()
JIPipeExpressionParameter	ExpressionSlicerAlgorithm.getExpressionZ()
IntegerRange	HyperstackSlicerAlgorithm.getIndicesC()
IntegerRange	HyperstackSlicerAlgorithm.getIndicesT()
IntegerRange	HyperstackSlicerAlgorithm.getIndicesZ()
ZProjectorAlgorithm.Method	ZProjectorAlgorithm.getMethod()
ZProjectorAlgorithm.Method	NewZProjectorAlgorithm.getMethod()
JIPipeExpressionParameter	ReorderHyperstackSlicesExpressionAlgorithm.getNewLocationExpression()
InputSlotMapParameterCollection	StackToDimensionMerger2Algorithm.getOrderAssignment()
HyperstackDimension	CreateStackAlgorithm.getOutputDimension()
OutputSlotMapParameterCollection	SplitByDimensionAlgorithm.getOutputIndices()
Anchor	ResliceAlgorithm.getPlaneStartLocation()
HyperstackDimension	NewZProjectorAlgorithm.getProjectedAxis()
OptionalIntegerRange	NewZProjectorAlgorithm.getRestrictToIndices()
JIPipeExpressionParameter	Merge2DToHyperstackAlgorithm.getSliceCLocation()
JIPipeExpressionParameter	Merge2DToHyperstackAlgorithm.getSliceTLocation()
JIPipeExpressionParameter	Merge2DToHyperstackAlgorithm.getSliceZLocation()
OutputSlotMapParameterCollection	StackSplitterAlgorithm.getStackAssignments()
int	ZProjectorAlgorithm.getStartSlice()
int	ZProjectorAlgorithm.getStopSlice()
HyperstackDimension	ReorderDimensionsAlgorithm.getTargetC()
HyperstackDimension	SplitByDimensionAlgorithm.getTargetDimension()
HyperstackDimension	StackCombinerAlgorithm.getTargetDimension()
OptionalTextAnnotationNameParameter	SplitByDimensionAlgorithm.getTargetDimensionAnnotation()
HyperstackDimension	ReorderDimensionsAlgorithm.getTargetT()
HyperstackDimension	ReorderDimensionsAlgorithm.getTargetZ()
boolean	ResliceAlgorithm.isFlipVertical()
boolean	StackSplitterAlgorithm.isIgnoreMissingSlices()
boolean	ExpressionSlicerAlgorithm.isIteratePerC()
boolean	ExpressionSlicerAlgorithm.isIteratePerT()
boolean	ExpressionSlicerAlgorithm.isIteratePerZ()
boolean	ResliceAlgorithm.isNoInterpolation()
boolean	ZProjectorAlgorithm.isProjectAllHyperstackTimePoints()
boolean	ExpressionSlicerAlgorithm.isRemoveDuplicates()
boolean	ResliceAlgorithm.isRotate()
boolean	ReorderHyperstackSlicesExpressionAlgorithm.isSilentlyOverride()
boolean	StackSplitterAlgorithm.isSortedStackIds()
boolean	StackSplitterAlgorithm.isUniqueStackIds()
void	ExpressionSlicerAlgorithm.setAnnotateC(OptionalTextAnnotationNameParameter annotateC)
void	HyperstackSlicerAlgorithm.setAnnotateC(OptionalTextAnnotationNameParameter annotateC)
void	ExpressionSlicerAlgorithm.setAnnotateT(OptionalTextAnnotationNameParameter annotateT)
void	HyperstackSlicerAlgorithm.setAnnotateT(OptionalTextAnnotationNameParameter annotateT)
void	ExpressionSlicerAlgorithm.setAnnotateZ(OptionalTextAnnotationNameParameter annotateZ)
void	HyperstackSlicerAlgorithm.setAnnotateZ(OptionalTextAnnotationNameParameter annotateZ)
void	StackTo2DAlgorithm.setAnnotationC(OptionalTextAnnotationNameParameter annotationC)
void	StackTo2DAlgorithm.setAnnotationIndex(OptionalTextAnnotationNameParameter annotationIndex)
void	SplitByDimensionAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	StackTo2DAlgorithm.setAnnotationT(OptionalTextAnnotationNameParameter annotationT)
void	StackSplitterAlgorithm.setAnnotationType(String annotationType)
void	StackTo2DAlgorithm.setAnnotationZ(OptionalTextAnnotationNameParameter annotationZ)
void	CreateStackAlgorithm.setCounterAnnotation(String counterAnnotation)
void	StackToDimensionMergerAlgorithm.setCreatedDimension(HyperstackDimension createdDimension)
void	StackToDimensionMerger2Algorithm.setCreatedDimension(HyperstackDimension createdDimension)
void	ExpressionSlicerAlgorithm.setExpressionC(JIPipeExpressionParameter expressionC)
void	ExpressionSlicerAlgorithm.setExpressionT(JIPipeExpressionParameter expressionT)
void	ExpressionSlicerAlgorithm.setExpressionZ(JIPipeExpressionParameter expressionZ)
void	ResliceAlgorithm.setFlipVertical(boolean flipVertical)
void	StackSplitterAlgorithm.setIgnoreMissingSlices(boolean ignoreMissingSlices)
void	HyperstackSlicerAlgorithm.setIndicesC(IntegerRange indicesC)
void	HyperstackSlicerAlgorithm.setIndicesT(IntegerRange indicesT)
void	HyperstackSlicerAlgorithm.setIndicesZ(IntegerRange indicesZ)
void	ExpressionSlicerAlgorithm.setIteratePerC(boolean iteratePerC)
void	ExpressionSlicerAlgorithm.setIteratePerT(boolean iteratePerT)
void	ExpressionSlicerAlgorithm.setIteratePerZ(boolean iteratePerZ)
void	ZProjectorAlgorithm.setMethod(ZProjectorAlgorithm.Method method)
void	NewZProjectorAlgorithm.setMethod(ZProjectorAlgorithm.Method method)
void	ReorderHyperstackSlicesExpressionAlgorithm.setNewLocationExpression(JIPipeExpressionParameter newLocationExpression)
void	ResliceAlgorithm.setNoInterpolation(boolean noInterpolation)
void	CreateStackAlgorithm.setOutputDimension(HyperstackDimension outputDimension)
void	ResliceAlgorithm.setPlaneStartLocation(Anchor planeStartLocation)
void	ZProjectorAlgorithm.setProjectAllHyperstackTimePoints(boolean projectAllHyperstackTimePoints)
void	NewZProjectorAlgorithm.setProjectedAxis(HyperstackDimension projectedAxis)
void	ExpressionSlicerAlgorithm.setRemoveDuplicates(boolean removeDuplicates)
void	NewZProjectorAlgorithm.setRestrictToIndices(OptionalIntegerRange restrictToIndices)
void	ResliceAlgorithm.setRotate(boolean rotate)
void	ReorderHyperstackSlicesExpressionAlgorithm.setSilentlyOverride(boolean silentlyOverride)
void	Merge2DToHyperstackAlgorithm.setSliceCLocation(JIPipeExpressionParameter sliceCLocation)
void	Merge2DToHyperstackAlgorithm.setSliceTLocation(JIPipeExpressionParameter sliceTLocation)
void	Merge2DToHyperstackAlgorithm.setSliceZLocation(JIPipeExpressionParameter sliceZLocation)
void	StackSplitterAlgorithm.setSortedStackIds(boolean sortedStackIds)
boolean	ZProjectorAlgorithm.setStartSlice(int startSlice)
boolean	ZProjectorAlgorithm.setStopSlice(int stopSlice)
void	ReorderDimensionsAlgorithm.setTargetC(HyperstackDimension targetC)
void	SplitByDimensionAlgorithm.setTargetDimension(HyperstackDimension targetDimension)
void	StackCombinerAlgorithm.setTargetDimension(HyperstackDimension targetDimension)
void	SplitByDimensionAlgorithm.setTargetDimensionAnnotation(OptionalTextAnnotationNameParameter targetDimensionAnnotation)
void	ReorderDimensionsAlgorithm.setTargetT(HyperstackDimension targetT)
void	ReorderDimensionsAlgorithm.setTargetZ(HyperstackDimension targetZ)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.edge

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.edge with annotations of type JIPipeParameter

Modifier and Type	Method and Description
float	CannyEdgeDetectorAlgorithm.getGaussianKernelRadius()
int	CannyEdgeDetectorAlgorithm.getGaussianKernelWidth()
double	CannyEdgeDetectorAlgorithm.getHighThreshold()
double	CannyEdgeDetectorAlgorithm.getLowThreshold()
LaplacianEdgeDetectorAlgorithm.Mode	LaplacianEdgeDetectorAlgorithm.getMode()
boolean	CannyEdgeDetectorAlgorithm.isNormalizeContrast()
boolean	LaplacianEdgeDetectorAlgorithm.isRemoveNegativeValues()
void	CannyEdgeDetectorAlgorithm.setGaussianKernelRadius(float gaussianKernelRadius)
void	CannyEdgeDetectorAlgorithm.setGaussianKernelWidth(int gaussianKernelWidth)
void	CannyEdgeDetectorAlgorithm.setHighThreshold(double highThreshold)
void	CannyEdgeDetectorAlgorithm.setLowThreshold(double lowThreshold)
void	LaplacianEdgeDetectorAlgorithm.setMode(LaplacianEdgeDetectorAlgorithm.Mode mode)
void	CannyEdgeDetectorAlgorithm.setNormalizeContrast(boolean normalizeContrast)
void	LaplacianEdgeDetectorAlgorithm.setRemoveNegativeValues(boolean removeNegativeValues)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.features

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.features with annotations of type JIPipeParameter

Modifier and Type	Method and Description
double	MeijeringVesselness2DFeatures.getAlpha()
double	LocalMaxima2DAlgorithm.getHeightTolerance()
double	StructureFeatureAlgorithm.getIntegrationScale()
int	DirectionalFilter2DAlgorithm.getLineLength()
double	FrangiVesselnessFeatures.getMaximumScale()
double	FrangiVesselnessFeatures.getMinimumScale()
MorphologicalFeatureContrast2DAlgorithm.Mode	MorphologicalFeatureContrast2DAlgorithm.getMode()
int	DirectionalFilter2DAlgorithm.getnDirections()
int	FrangiVesselnessFeatures.getNumScales()
inra.ijpb.morphology.directional.DirectionalFilter.Operation	DirectionalFilter2DAlgorithm.getOperation()
OrientationFeatures2DAlgorithm.OutputParameters	OrientationFeatures2DAlgorithm.getOutputParameters()
LocalMaxima2DAlgorithm.OutputType	LocalMaxima2DAlgorithm.getOutputType()
int	LaplacianOfGaussian2DAlgorithm.getRadius()
int	AlternatingMorphologicalFilters2DAlgorithm.getRadius1()
int	MorphologicalTextureContrast2DAlgorithm.getRadius1()
int	MorphologicalFeatureContrast2DAlgorithm.getRadius1()
int	AlternatingMorphologicalFilters2DAlgorithm.getRadius2()
int	MorphologicalTextureContrast2DAlgorithm.getRadius2()
int	MorphologicalFeatureContrast2DAlgorithm.getRadius2()
DoubleList	MeijeringVesselness2DFeatures.getScales()
double	DifferenceOfGaussian2DAlgorithm.getSigma0X()
double	DifferenceOfGaussian2DAlgorithm.getSigma0Y()
double	DifferenceOfGaussian2DAlgorithm.getSigma1X()
double	DifferenceOfGaussian2DAlgorithm.getSigma1Y()
FrangiVesselnessFeatures.SlicingMode	FrangiVesselnessFeatures.getSlicingMode()
double	HessianFeatureAlgorithm.getSmoothing()
double	StructureFeatureAlgorithm.getSmoothing()
double	DerivativesFeaturesAlgorithm.getSmoothingScale()
inra.ijpb.morphology.Strel.Shape	AlternatingMorphologicalFilters2DAlgorithm.getStructureElement()
inra.ijpb.morphology.Strel.Shape	MorphologicalTextureContrast2DAlgorithm.getStructureElement()
inra.ijpb.morphology.Strel.Shape	MorphologicalFeatureContrast2DAlgorithm.getStructureElement()
OrientationJStructureTensorParameters	OrientationFeatures2DAlgorithm.getStructureTensorParameters()
double	LocalMaxima2DAlgorithm.getThreshold()
inra.ijpb.morphology.directional.DirectionalFilter.Type	DirectionalFilter2DAlgorithm.getType()
int	DerivativesFeaturesAlgorithm.getxOrder()
int	DerivativesFeaturesAlgorithm.getyOrder()
int	DerivativesFeaturesAlgorithm.getzOrder()
boolean	HessianFeatureAlgorithm.isCompareAbsolute()
boolean	LocalMaxima2DAlgorithm.isExcludeOnEdges()
boolean	DerivativesFeaturesAlgorithm.isForce2D()
boolean	HessianFeatureAlgorithm.isForce2D()
boolean	StructureFeatureAlgorithm.isForce2D()
boolean	LocalMaxima2DAlgorithm.isInputIsEDM()
boolean	MeijeringVesselness2DFeatures.isInvert()
boolean	FrangiVesselnessFeatures.isInvert()
boolean	DerivativesFeaturesAlgorithm.isIsotropicGaussian()
boolean	HessianFeatureAlgorithm.isIsotropicGaussian()
boolean	StructureFeatureAlgorithm.isIsotropicGaussian()
boolean	OrientationFeatures2DAlgorithm.OutputParameters.isOutputCoherency()
boolean	OrientationFeatures2DAlgorithm.OutputParameters.isOutputEnergy()
boolean	OrientationFeatures2DAlgorithm.OutputParameters.isOutputGradientX()
boolean	OrientationFeatures2DAlgorithm.OutputParameters.isOutputGradientY()
boolean	OrientationFeatures2DAlgorithm.OutputParameters.isOutputOrientation()
boolean	OrientationFeatures2DAlgorithm.isRadians()
boolean	LocalMaxima2DAlgorithm.isStrict()
void	MeijeringVesselness2DFeatures.setAlpha(double alpha)
void	HessianFeatureAlgorithm.setCompareAbsolute(boolean compareAbsolute)
void	LocalMaxima2DAlgorithm.setExcludeOnEdges(boolean excludeOnEdges)
void	DerivativesFeaturesAlgorithm.setForce2D(boolean force2D)
void	HessianFeatureAlgorithm.setForce2D(boolean force2D)
void	StructureFeatureAlgorithm.setForce2D(boolean force2D)
void	LocalMaxima2DAlgorithm.setHeightTolerance(double heightTolerance)
void	LocalMaxima2DAlgorithm.setInputIsEDM(boolean inputIsEDM)
void	StructureFeatureAlgorithm.setIntegrationScale(double integrationScale)
void	MeijeringVesselness2DFeatures.setInvert(boolean invert)
void	FrangiVesselnessFeatures.setInvert(boolean invert)
void	DerivativesFeaturesAlgorithm.setIsotropicGaussian(boolean isotropicGaussian)
void	HessianFeatureAlgorithm.setIsotropicGaussian(boolean isotropicGaussian)
void	StructureFeatureAlgorithm.setIsotropicGaussian(boolean isotropicGaussian)
void	DirectionalFilter2DAlgorithm.setLineLength(int lineLength)
void	FrangiVesselnessFeatures.setMaximumScale(double maximumScale)
void	FrangiVesselnessFeatures.setMinimumScale(double minimumScale)
void	MorphologicalFeatureContrast2DAlgorithm.setMode(MorphologicalFeatureContrast2DAlgorithm.Mode mode)
void	DirectionalFilter2DAlgorithm.setnDirections(int nDirections)
void	FrangiVesselnessFeatures.setNumScales(int numScales)
void	DirectionalFilter2DAlgorithm.setOperation(inra.ijpb.morphology.directional.DirectionalFilter.Operation operation)
void	OrientationFeatures2DAlgorithm.OutputParameters.setOutputCoherency(boolean outputCoherency)
void	OrientationFeatures2DAlgorithm.OutputParameters.setOutputEnergy(boolean outputEnergy)
void	OrientationFeatures2DAlgorithm.OutputParameters.setOutputGradientX(boolean outputGradientX)
void	OrientationFeatures2DAlgorithm.OutputParameters.setOutputGradientY(boolean outputGradientY)
void	OrientationFeatures2DAlgorithm.OutputParameters.setOutputOrientation(boolean outputOrientation)
void	LocalMaxima2DAlgorithm.setOutputType(LocalMaxima2DAlgorithm.OutputType outputType)
void	OrientationFeatures2DAlgorithm.setRadians(boolean radians)
void	LaplacianOfGaussian2DAlgorithm.setRadius(int radius)
void	AlternatingMorphologicalFilters2DAlgorithm.setRadius1(int radius1)
void	MorphologicalTextureContrast2DAlgorithm.setRadius1(int radius1)
void	MorphologicalFeatureContrast2DAlgorithm.setRadius1(int radius1)
void	AlternatingMorphologicalFilters2DAlgorithm.setRadius2(int radius2)
void	MorphologicalTextureContrast2DAlgorithm.setRadius2(int radius2)
void	MorphologicalFeatureContrast2DAlgorithm.setRadius2(int radius2)
void	MeijeringVesselness2DFeatures.setScales(DoubleList scales)
void	DifferenceOfGaussian2DAlgorithm.setSigma0X(double sigma0X)
void	DifferenceOfGaussian2DAlgorithm.setSigma0Y(double sigma0Y)
void	DifferenceOfGaussian2DAlgorithm.setSigma1X(double sigma1X)
void	DifferenceOfGaussian2DAlgorithm.setSigma1Y(double sigma1Y)
void	FrangiVesselnessFeatures.setSlicingMode(FrangiVesselnessFeatures.SlicingMode slicingMode)
void	HessianFeatureAlgorithm.setSmoothing(double smoothing)
void	StructureFeatureAlgorithm.setSmoothing(double smoothing)
void	DerivativesFeaturesAlgorithm.setSmoothingScale(double smoothingScale)
void	LocalMaxima2DAlgorithm.setStrict(boolean strict)
void	AlternatingMorphologicalFilters2DAlgorithm.setStructureElement(inra.ijpb.morphology.Strel.Shape structureElement)
void	MorphologicalTextureContrast2DAlgorithm.setStructureElement(inra.ijpb.morphology.Strel.Shape structureElement)
void	MorphologicalFeatureContrast2DAlgorithm.setStructureElement(inra.ijpb.morphology.Strel.Shape structureElement)
void	LocalMaxima2DAlgorithm.setThreshold(double threshold)
void	DirectionalFilter2DAlgorithm.setType(inra.ijpb.morphology.directional.DirectionalFilter.Type type)
void	DerivativesFeaturesAlgorithm.setxOrder(int xOrder)
void	DerivativesFeaturesAlgorithm.setyOrder(int yOrder)
void	DerivativesFeaturesAlgorithm.setzOrder(int zOrder)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.fft

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.fft with annotations of type JIPipeParameter

Modifier and Type	Method and Description
double	FFTBandPassFilter.getFilterLargeDiameter()
double	FFTBandPassFilter.getFilterSmallDiameter()
FFTBandPassFilter.SuppressStripesMode	FFTBandPassFilter.getSuppressStripesMode()
double	FFTBandPassFilter.getToleranceOfDirectionPercentage()
boolean	FFTBandPassFilter.isDoScaling()
boolean	FFTBandPassFilter.isSaturate()
void	FFTBandPassFilter.setDoScaling(boolean doScaling)
void	FFTBandPassFilter.setFilterLargeDiameter(double filterLargeDiameter)
void	FFTBandPassFilter.setFilterSmallDiameter(double filterSmallDiameter)
void	FFTBandPassFilter.setSaturate(boolean saturate)
void	FFTBandPassFilter.setSuppressStripesMode(FFTBandPassFilter.SuppressStripesMode suppressStripesMode)
void	FFTBandPassFilter.setToleranceOfDirectionPercentage(double toleranceOfDirectionPercentage)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.forms

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.forms with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalIntegerParameter	DrawROIAlgorithm.getOverwriteSizeC()
OptionalIntegerParameter	DrawMaskAlgorithm.getOverwriteSizeC()
OptionalIntegerParameter	DrawROIAlgorithm.getOverwriteSizeT()
OptionalIntegerParameter	DrawMaskAlgorithm.getOverwriteSizeT()
OptionalIntegerParameter	DrawROIAlgorithm.getOverwriteSizeZ()
OptionalIntegerParameter	DrawMaskAlgorithm.getOverwriteSizeZ()
void	DrawROIAlgorithm.setOverwriteSizeC(OptionalIntegerParameter overwriteSizeC)
void	DrawMaskAlgorithm.setOverwriteSizeC(OptionalIntegerParameter overwriteSizeC)
void	DrawROIAlgorithm.setOverwriteSizeT(OptionalIntegerParameter overwriteSizeT)
void	DrawMaskAlgorithm.setOverwriteSizeT(OptionalIntegerParameter overwriteSizeT)
void	DrawROIAlgorithm.setOverwriteSizeZ(OptionalIntegerParameter overwriteSizeZ)
void	DrawMaskAlgorithm.setOverwriteSizeZ(OptionalIntegerParameter overwriteSizeZ)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.generate

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.generate with annotations of type JIPipeParameter

Modifier and Type	Method and Description
ColorMap	GenerateLUTImageFromColorMap.getColorMap()
JIPipeDataInfoRef	GenerateZeroImage.getDataType()
inra.ijpb.morphology.Strel.Shape	GenerateStructureElement2DAlgorithm.getElement()
inra.ijpb.morphology.Strel3D.Shape	GenerateStructureElement3DAlgorithm.getElement()
JIPipeExpressionParameter	GenerateMissingImageFromMathExpression2D.getFunction()
int	GenerateLUTImageFromColorMap.getHeight()
int	GenerateZeroImage.getHeight()
Matrix2DFloat	ImageFromMatrix2DAlgorithm.getMatrix()
OptionalIntegerParameter	GenerateMissingImageFromMathExpression2D.getOverwriteHeight()
OptionalIntegerParameter	GenerateMissingZeroImage.getOverwriteHeight()
OptionalBitDepth	GenerateMissingImageFromMathExpression2D.getOverwriteOutputBitDepth()
OptionalBitDepth	GenerateMissingZeroImage.getOverwriteOutputBitDepth()
OptionalIntegerParameter	GenerateMissingImageFromMathExpression2D.getOverwriteSizeC()
OptionalIntegerParameter	GenerateMissingZeroImage.getOverwriteSizeC()
OptionalIntegerParameter	GenerateMissingImageFromMathExpression2D.getOverwriteSizeT()
OptionalIntegerParameter	GenerateMissingZeroImage.getOverwriteSizeT()
OptionalIntegerParameter	GenerateMissingImageFromMathExpression2D.getOverwriteSizeZ()
OptionalIntegerParameter	GenerateMissingZeroImage.getOverwriteSizeZ()
OptionalIntegerParameter	GenerateMissingImageFromMathExpression2D.getOverwriteWidth()
OptionalIntegerParameter	GenerateMissingZeroImage.getOverwriteWidth()
ResultsTableData	GenerateMissingTablesAlgorithm.getPlaceholderTable() Deprecated.
ResultsTableData	GenerateMissingTablesAlgorithm2.getPlaceholderTable()
int	GenerateStructureElement2DAlgorithm.getRadius()
int	GenerateStructureElement3DAlgorithm.getRadius()
int	GenerateZeroImage.getSizeC()
int	GenerateZeroImage.getSizeT()
int	GenerateZeroImage.getSizeZ()
int	GenerateLUTImageFromColorMap.getWidth()
int	GenerateZeroImage.getWidth()
boolean	GenerateMissingImageFromMathExpression2D.isGenerateOnePerBatch()
boolean	GenerateMissingZeroImage.isGenerateOnePerBatch()
void	GenerateLUTImageFromColorMap.setColorMap(ColorMap colorMap)
void	GenerateZeroImage.setDataType(JIPipeDataInfoRef dataType)
void	GenerateStructureElement2DAlgorithm.setElement(inra.ijpb.morphology.Strel.Shape element)
void	GenerateStructureElement3DAlgorithm.setElement(inra.ijpb.morphology.Strel3D.Shape element)
void	GenerateMissingImageFromMathExpression2D.setFunction(JIPipeExpressionParameter transformation)
void	GenerateMissingImageFromMathExpression2D.setGenerateOnePerBatch(boolean generateOnePerBatch)
void	GenerateMissingZeroImage.setGenerateOnePerBatch(boolean generateOnePerBatch)
void	GenerateLUTImageFromColorMap.setHeight(int height)
void	GenerateZeroImage.setHeight(int height)
void	ImageFromMatrix2DAlgorithm.setMatrix(Matrix2DFloat matrix)
void	GenerateMissingImageFromMathExpression2D.setOverwriteHeight(OptionalIntegerParameter overwriteHeight)
void	GenerateMissingZeroImage.setOverwriteHeight(OptionalIntegerParameter overwriteHeight)
void	GenerateMissingImageFromMathExpression2D.setOverwriteOutputBitDepth(OptionalBitDepth overwriteOutputBitDepth)
void	GenerateMissingZeroImage.setOverwriteOutputBitDepth(OptionalBitDepth overwriteOutputBitDepth)
void	GenerateMissingImageFromMathExpression2D.setOverwriteSizeC(OptionalIntegerParameter overwriteSizeC)
void	GenerateMissingZeroImage.setOverwriteSizeC(OptionalIntegerParameter overwriteSizeC)
void	GenerateMissingImageFromMathExpression2D.setOverwriteSizeT(OptionalIntegerParameter overwriteSizeT)
void	GenerateMissingZeroImage.setOverwriteSizeT(OptionalIntegerParameter overwriteSizeT)
void	GenerateMissingImageFromMathExpression2D.setOverwriteSizeZ(OptionalIntegerParameter overwriteSizeZ)
void	GenerateMissingZeroImage.setOverwriteSizeZ(OptionalIntegerParameter overwriteSizeZ)
void	GenerateMissingImageFromMathExpression2D.setOverwriteWidth(OptionalIntegerParameter overwriteWidth)
void	GenerateMissingZeroImage.setOverwriteWidth(OptionalIntegerParameter overwriteWidth)
void	GenerateMissingTablesAlgorithm.setPlaceholderTable(ResultsTableData placeholderTable) Deprecated.
void	GenerateMissingTablesAlgorithm2.setPlaceholderTable(ResultsTableData placeholderTable)
void	GenerateStructureElement2DAlgorithm.setRadius(int radius)
void	GenerateStructureElement3DAlgorithm.setRadius(int radius)
void	GenerateZeroImage.setSizeC(int sizeC)
void	GenerateZeroImage.setSizeT(int sizeT)
void	GenerateZeroImage.setSizeZ(int sizeZ)
void	GenerateLUTImageFromColorMap.setWidth(int width)
void	GenerateZeroImage.setWidth(int width)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.io

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.io with annotations of type JIPipeParameter

Modifier and Type	Method and Description
AVICompression	ExportImage2Algorithm.getAviCompression()
AVICompression	ExportImageAlgorithm.getAviCompression() Deprecated.
AVICompression	ExportImageDirectorySlotAlgorithm.getAviCompression()
JIPipeDataByMetadataExporter	ExportImageAlgorithm.getExporter() Deprecated.
JIPipeDataByMetadataExporter	ExportTableAsXLSXAlgorithm.getExporter() Deprecated.
JIPipeDataByMetadataExporter	ExportTableAlgorithm.getExporter() Deprecated.
JIPipeDataByMetadataExporter	ExportImageDirectorySlotAlgorithm.getExporter()
JIPipeDataByMetadataExporter	ExportROIAlgorithm.getExporter() Deprecated.
ImageJDataExporterRef	RunImageJExporterAlgorithm.getExporterType()
ImageJExportParameters	RunImageJExporterAlgorithm.getExportParameters()
ExportImageAlgorithm.FileFormat	ExportImage2Algorithm.getFileFormat()
ExportImageAlgorithm.FileFormat	ExportImageAlgorithm.getFileFormat() Deprecated.
ExportTableAlgorithm.FileFormat	ExportTableAlgorithm.getFileFormat() Deprecated.
ExportImageAlgorithm.FileFormat	ExportImageDirectorySlotAlgorithm.getFileFormat()
ExportTableAlgorithm.FileFormat	ExportTableAlgorithm2.getFileFormat()
DataExportExpressionParameter	ExportImage2Algorithm.getFilePath()
DataExportExpressionParameter	ExportROIAlgorithm2.getFilePath()
DataExportExpressionParameter	ExportTableAsXLSXAlgorithm2.getFilePath()
DataExportExpressionParameter	ExportTableAlgorithm2.getFilePath()
JIPipeExpressionParameter	ImagePlusFromGUI.getImageFilters()
LogicalOperation	ImagePlusFromGUI.getImageFiltersOperation()
ImageJDataImporterRef	RunImageJImporterAlgorithm.getImporterType()
ImageJImportParameters	RunImageJImporterAlgorithm.getImportParameters()
int	ExportImage2Algorithm.getJpegQuality()
int	ExportImageAlgorithm.getJpegQuality() Deprecated.
int	ExportImageDirectorySlotAlgorithm.getJpegQuality()
HyperstackDimension	ExportImage2Algorithm.getMovieAnimatedDimension()
HyperstackDimension	ExportImageAlgorithm.getMovieAnimatedDimension() Deprecated.
HyperstackDimension	ExportImageDirectorySlotAlgorithm.getMovieAnimatedDimension()
int	ExportImage2Algorithm.getMovieFPS()
int	ExportImageAlgorithm.getMovieFPS() Deprecated.
int	ExportImageDirectorySlotAlgorithm.getMovieFPS()
JIPipeExpressionParameter	ExportTableAsXLSXAlgorithm.getOrderExpression() Deprecated.
JIPipeExpressionParameter	ExportTableAsXLSXAlgorithm2.getOrderExpression()
Path	ExportImageAlgorithm.getOutputDirectory() Deprecated.
Path	ExportTableAsXLSXAlgorithm.getOutputDirectory() Deprecated.
Path	ExportTableAlgorithm.getOutputDirectory() Deprecated.
Path	ExportROIAlgorithm.getOutputDirectory() Deprecated.
JIPipeExpressionParameter	ExportTableAsXLSXAlgorithm.getSheetNameExpression() Deprecated.
JIPipeExpressionParameter	ExportTableAsXLSXAlgorithm2.getSheetNameExpression()
JIPipeExpressionParameter	ResultsTableFromGUI.getTitleFilterExpression()
boolean	ExportROIAlgorithm2.isExportAsROIFile()
boolean	ExportROIAlgorithm.isExportAsROIFile() Deprecated.
boolean	ImagePlusFromGUI.isOnlyActiveImage()
boolean	ExportImageAlgorithm.isRelativeToProjectDir() Deprecated.
boolean	ExportTableAsXLSXAlgorithm.isRelativeToProjectDir() Deprecated.
boolean	ExportTableAlgorithm.isRelativeToProjectDir() Deprecated.
boolean	ExportROIAlgorithm.isRelativeToProjectDir() Deprecated.
void	ExportImage2Algorithm.setAviCompression(AVICompression aviCompression)
void	ExportImageAlgorithm.setAviCompression(AVICompression aviCompression) Deprecated.
void	ExportImageDirectorySlotAlgorithm.setAviCompression(AVICompression aviCompression)
void	ExportROIAlgorithm2.setExportAsROIFile(boolean exportAsROIFile)
void	ExportROIAlgorithm.setExportAsROIFile(boolean exportAsROIFile) Deprecated.
void	RunImageJExporterAlgorithm.setExporterType(ImageJDataExporterRef exporterType)
void	ExportImage2Algorithm.setFileFormat(ExportImageAlgorithm.FileFormat fileFormat)
void	ExportImageAlgorithm.setFileFormat(ExportImageAlgorithm.FileFormat fileFormat) Deprecated.
void	ExportImageDirectorySlotAlgorithm.setFileFormat(ExportImageAlgorithm.FileFormat fileFormat)
void	ExportTableAlgorithm.setFileFormat(ExportTableAlgorithm.FileFormat fileFormat) Deprecated.
void	ExportTableAlgorithm2.setFileFormat(ExportTableAlgorithm.FileFormat fileFormat)
void	ExportImage2Algorithm.setFilePath(DataExportExpressionParameter filePath)
void	ExportROIAlgorithm2.setFilePath(DataExportExpressionParameter filePath)
void	ExportTableAsXLSXAlgorithm2.setFilePath(DataExportExpressionParameter filePath)
void	ExportTableAlgorithm2.setFilePath(DataExportExpressionParameter filePath)
void	ImagePlusFromGUI.setImageFilters(JIPipeExpressionParameter imageFilters)
void	ImagePlusFromGUI.setImageFiltersOperation(LogicalOperation imageFiltersOperation)
void	RunImageJImporterAlgorithm.setImporterType(ImageJDataImporterRef importerType)
boolean	ExportImage2Algorithm.setJpegQuality(int jpegQuality)
boolean	ExportImageAlgorithm.setJpegQuality(int jpegQuality) Deprecated.
boolean	ExportImageDirectorySlotAlgorithm.setJpegQuality(int jpegQuality)
void	ExportImage2Algorithm.setMovieAnimatedDimension(HyperstackDimension movieAnimatedDimension)
void	ExportImageAlgorithm.setMovieAnimatedDimension(HyperstackDimension movieAnimatedDimension) Deprecated.
void	ExportImageDirectorySlotAlgorithm.setMovieAnimatedDimension(HyperstackDimension movieAnimatedDimension)
void	ExportImage2Algorithm.setMovieFPS(int movieFPS)
void	ExportImageAlgorithm.setMovieFPS(int movieFPS) Deprecated.
void	ExportImageDirectorySlotAlgorithm.setMovieFPS(int movieFPS)
void	ImagePlusFromGUI.setOnlyActiveImage(boolean onlyActiveImage)
void	ExportTableAsXLSXAlgorithm.setOrderExpression(JIPipeExpressionParameter orderExpression) Deprecated.
void	ExportTableAsXLSXAlgorithm2.setOrderExpression(JIPipeExpressionParameter orderExpression)
void	ExportImageAlgorithm.setOutputDirectory(Path outputDirectory) Deprecated.
void	ExportTableAsXLSXAlgorithm.setOutputDirectory(Path outputDirectory) Deprecated.
void	ExportTableAlgorithm.setOutputDirectory(Path outputDirectory) Deprecated.
void	ExportROIAlgorithm.setOutputDirectory(Path outputDirectory) Deprecated.
void	ExportImageAlgorithm.setRelativeToProjectDir(boolean relativeToProjectDir) Deprecated.
void	ExportTableAsXLSXAlgorithm.setRelativeToProjectDir(boolean relativeToProjectDir) Deprecated.
void	ExportTableAlgorithm.setRelativeToProjectDir(boolean relativeToProjectDir) Deprecated.
void	ExportROIAlgorithm.setRelativeToProjectDir(boolean relativeToProjectDir) Deprecated.
void	ExportTableAsXLSXAlgorithm.setSheetNameExpression(JIPipeExpressionParameter sheetNameExpression) Deprecated.
void	ExportTableAsXLSXAlgorithm2.setSheetNameExpression(JIPipeExpressionParameter sheetNameExpression)
void	ResultsTableFromGUI.setTitleFilterExpression(JIPipeExpressionParameter titleFilterExpression)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.labels

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.labels with annotations of type JIPipeParameter

Modifier and Type	Method and Description
Color	LabelsToRGBAlgorithm.getBackgroundColor()
int	CropLabelsAlgorithm.getBorder()
inra.ijpb.color.ColorMaps.CommonLabelMaps	LabelsToRGBAlgorithm.getColorMap()
Neighborhood2D	LabelsToROIAlgorithm.getConnectivity()
Neighborhood2D	SplitLabelsConnectedComponents2DAlgorithm.getConnectivity()
OptionalTextAnnotationNameParameter	AnnotateWithOverlapMeasureLabelsAlgorithm.getDiceCoefficientAnnotation()
OptionalTextAnnotationNameParameter	AnnotateWithOverlapMeasureLabelsAlgorithm.getFalseNegativeErrorAnnotation()
OptionalTextAnnotationNameParameter	AnnotateWithOverlapMeasureLabelsAlgorithm.getFalsePositiveErrorAnnotation()
OptionalTextAnnotationNameParameter	AnnotateWithOverlapMeasureLabelsAlgorithm.getJaccardIndexAnnotation()
OptionalTextAnnotationNameParameter	CropLabelsAlgorithm.getLabelIdAnnotation()
OptionalIntegerRange	CropLabelsAlgorithm.getLabelIdLimit()
OptionalTextAnnotationNameParameter	SeparateLabelsAlgorithm.getLabelIndexAnnotation()
JIPipeExpressionParameter	LabelsToROIAlgorithm.getLabelNameExpression()
double	DilateLabelsAlgorithm.getMaxRadius()
ImageStatisticsSetParameter	ExtractLabelStatisticsAlgorithm.getMeasurements()
OverlapStatisticsSetParameter	OverlapMeasureLabelsAlgorithm.getMeasurements()
LabelsToROIAlgorithm.Method	LabelsToROIAlgorithm.getMethod()
int	MergeSmallLabelsAlgorithm.getMinimumNumberOfPixels()
int	MergeLabelsToThicknessAlgorithm.getMinThickness()
OptionalJIPipeExpressionParameter	ReplaceLabelsByTableAlgorithm.getMissingValueReplacement()
Neighborhood2D	SeparateTouchingLabels2DAlgorithm.getNeighborhood()
TableColumnSourceExpressionParameter	ReplaceLabelsByTableAlgorithm.getNewLabelColumn()
int	MergeLabelsToBinsAlgorithm.getNumBins()
TableColumnSourceExpressionParameter	ReplaceLabelsByTableAlgorithm.getOldLabelColumn()
float	ExpandLabelsAlgorithm.getRatio()
IntRangeAndIntegerPairParameter.List	ReplaceLabelsAlgorithm.getReplacements()
SortOrder	MergeLabelsToThicknessAlgorithm.getSortOrder()
SortOrder	MergeLabelsToBinsAlgorithm.getSortOrder()
ImageROITargetArea	MergeLabelsToThicknessAlgorithm.getSourceArea()
ImageROITargetArea	MergeSmallLabelsAlgorithm.getSourceArea()
OptionalTextAnnotationNameParameter	AnnotateWithOverlapMeasureLabelsAlgorithm.getTotalOverlapAnnotation()
OptionalTextAnnotationNameParameter	AnnotateWithOverlapMeasureLabelsAlgorithm.getVolumeSimilarityAnnotation()
boolean	MergeLabelsToBinsAlgorithm.isEqualizeFrequencies()
boolean	MergeLabelsToThicknessAlgorithm.isExcludeZero()
boolean	MergeSmallLabelsAlgorithm.isExcludeZero()
boolean	MergeLabelsToBinsAlgorithm.isExcludeZero()
boolean	ReplaceLabelsByTableAlgorithm.isIgnoreZero()
boolean	ExtractLabelStatisticsAlgorithm.isMeasureInPhysicalUnits()
boolean	MergeSmallLabelsAlgorithm.isMergeToLargerLabel()
boolean	LabelsToRGBAlgorithm.isShuffleLut()
void	LabelsToRGBAlgorithm.setBackgroundColor(Color backgroundColor)
void	CropLabelsAlgorithm.setBorder(int border)
void	LabelsToRGBAlgorithm.setColorMap(inra.ijpb.color.ColorMaps.CommonLabelMaps colorMap)
void	LabelsToROIAlgorithm.setConnectivity(Neighborhood2D connectivity)
void	SplitLabelsConnectedComponents2DAlgorithm.setConnectivity(Neighborhood2D connectivity)
void	AnnotateWithOverlapMeasureLabelsAlgorithm.setDiceCoefficientAnnotation(OptionalTextAnnotationNameParameter diceCoefficientAnnotation)
void	MergeLabelsToBinsAlgorithm.setEqualizeFrequencies(boolean equalizeFrequencies)
void	MergeLabelsToThicknessAlgorithm.setExcludeZero(boolean excludeZero)
void	MergeSmallLabelsAlgorithm.setExcludeZero(boolean excludeZero)
void	MergeLabelsToBinsAlgorithm.setExcludeZero(boolean excludeZero)
void	AnnotateWithOverlapMeasureLabelsAlgorithm.setFalseNegativeErrorAnnotation(OptionalTextAnnotationNameParameter falseNegativeErrorAnnotation)
void	AnnotateWithOverlapMeasureLabelsAlgorithm.setFalsePositiveErrorAnnotation(OptionalTextAnnotationNameParameter falsePositiveErrorAnnotation)
void	ReplaceLabelsByTableAlgorithm.setIgnoreZero(boolean ignoreZero)
void	AnnotateWithOverlapMeasureLabelsAlgorithm.setJaccardIndexAnnotation(OptionalTextAnnotationNameParameter jaccardIndexAnnotation)
void	CropLabelsAlgorithm.setLabelIdAnnotation(OptionalTextAnnotationNameParameter labelIdAnnotation)
void	CropLabelsAlgorithm.setLabelIdLimit(OptionalIntegerRange labelIdLimit)
void	SeparateLabelsAlgorithm.setLabelIndexAnnotation(OptionalTextAnnotationNameParameter labelIndexAnnotation)
void	LabelsToROIAlgorithm.setLabelNameExpression(JIPipeExpressionParameter labelNameExpression)
void	DilateLabelsAlgorithm.setMaxRadius(double maxRadius)
void	ExtractLabelStatisticsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	ExtractLabelStatisticsAlgorithm.setMeasurements(ImageStatisticsSetParameter measurements)
void	OverlapMeasureLabelsAlgorithm.setMeasurements(OverlapStatisticsSetParameter measurements)
void	MergeSmallLabelsAlgorithm.setMergeToLargerLabel(boolean mergeToLargerLabel)
void	LabelsToROIAlgorithm.setMethod(LabelsToROIAlgorithm.Method method)
void	MergeSmallLabelsAlgorithm.setMinimumNumberOfPixels(int minimumNumberOfPixels)
void	MergeLabelsToThicknessAlgorithm.setMinThickness(int minThickness)
void	ReplaceLabelsByTableAlgorithm.setMissingValueReplacement(OptionalJIPipeExpressionParameter missingValueReplacement)
void	SeparateTouchingLabels2DAlgorithm.setNeighborhood(Neighborhood2D neighborhood)
void	ReplaceLabelsByTableAlgorithm.setNewLabelColumn(TableColumnSourceExpressionParameter newLabelColumn)
void	MergeLabelsToBinsAlgorithm.setNumBins(int numBins)
void	ReplaceLabelsByTableAlgorithm.setOldLabelColumn(TableColumnSourceExpressionParameter oldLabelColumn)
void	ExpandLabelsAlgorithm.setRatio(float ratio)
void	ReplaceLabelsAlgorithm.setReplacements(IntRangeAndIntegerPairParameter.List replacements)
void	LabelsToRGBAlgorithm.setShuffleLut(boolean shuffleLut)
void	MergeLabelsToThicknessAlgorithm.setSortOrder(SortOrder sortOrder)
void	MergeLabelsToBinsAlgorithm.setSortOrder(SortOrder sortOrder)
void	MergeLabelsToThicknessAlgorithm.setSourceArea(ImageROITargetArea sourceArea)
void	MergeSmallLabelsAlgorithm.setSourceArea(ImageROITargetArea sourceArea)
void	AnnotateWithOverlapMeasureLabelsAlgorithm.setTotalOverlapAnnotation(OptionalTextAnnotationNameParameter totalOverlapAnnotation)
void	AnnotateWithOverlapMeasureLabelsAlgorithm.setVolumeSimilarityAnnotation(OptionalTextAnnotationNameParameter volumeSimilarityAnnotation)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.labels.filter

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.labels.filter with annotations of type JIPipeParameter

Modifier and Type	Method and Description
float	FilterLabelsByThicknessAlgorithm.getDeletedLabel()
JIPipeExpressionParameter	FilterLabelsByExpression2DAlgorithm.getExpression()
JIPipeExpressionParameter	FilterLabelsByExpression3DAlgorithm.getExpression()
JIPipeExpressionParameter	FilterLabelsByThicknessAlgorithm.getFilter()
JIPipeExpressionParameter	FilterLabelsByStatisticsAlgorithm.getFilters()
int	RemoveLargestLabelAlgorithm.getIterations()
FilterLabelsByOverlapAlgorithm.LabelFilterSettings	FilterLabelsByOverlapAlgorithm.getLabels1Settings()
FilterLabelsByOverlapAlgorithm.LabelFilterSettings	FilterLabelsByOverlapAlgorithm.getLabels2Settings()
ImageStatisticsSetParameter	FilterLabelsByStatisticsAlgorithm.getMeasurements()
JIPipeExpressionParameter	FilterLabelsByOverlapAlgorithm.LabelFilterSettings.getOverlapFilter()
ImageStatisticsSetParameter	FilterLabelsByOverlapAlgorithm.getOverlapFilterMeasurements()
IntegerRange	FilterLabelsByIdAlgorithm.getValues()
boolean	FilterLabelsByMaskAlgorithm.isDeleteMaskedLabels()
boolean	FilterLabelsByOverlapAlgorithm.LabelFilterSettings.isEnabled()
boolean	FilterLabelsByOverlapAlgorithm.LabelFilterSettings.isEnforceOverlap()
boolean	FilterLabelsByThicknessAlgorithm.isExcludeZero()
boolean	FilterLabelsByOverlapAlgorithm.LabelFilterSettings.isInvert()
boolean	FilterLabelsByIdAlgorithm.isKeepValues()
boolean	FilterLabelsByOverlapAlgorithm.LabelFilterSettings.isMeasureInPhysicalUnits()
boolean	FilterLabelsByStatisticsAlgorithm.isMeasureInPhysicalUnits()
boolean	FilterLabelsByOverlapAlgorithm.LabelFilterSettings.isOutputOverlaps()
void	FilterLabelsByThicknessAlgorithm.setDeletedLabel(float deletedLabel)
void	FilterLabelsByMaskAlgorithm.setDeleteMaskedLabels(boolean deleteMaskedLabels)
void	FilterLabelsByOverlapAlgorithm.LabelFilterSettings.setEnabled(boolean enabled)
void	FilterLabelsByOverlapAlgorithm.LabelFilterSettings.setEnforceOverlap(boolean enforceOverlap)
void	FilterLabelsByThicknessAlgorithm.setExcludeZero(boolean excludeZero)
void	FilterLabelsByExpression2DAlgorithm.setExpression(JIPipeExpressionParameter expression)
void	FilterLabelsByExpression3DAlgorithm.setExpression(JIPipeExpressionParameter expression)
void	FilterLabelsByThicknessAlgorithm.setFilter(JIPipeExpressionParameter filter)
void	FilterLabelsByStatisticsAlgorithm.setFilters(JIPipeExpressionParameter filters)
void	FilterLabelsByOverlapAlgorithm.LabelFilterSettings.setInvert(boolean invert)
void	RemoveLargestLabelAlgorithm.setIterations(int iterations)
void	FilterLabelsByIdAlgorithm.setKeepValues(boolean keepValues)
void	FilterLabelsByOverlapAlgorithm.LabelFilterSettings.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	FilterLabelsByStatisticsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	FilterLabelsByStatisticsAlgorithm.setMeasurements(ImageStatisticsSetParameter measurements)
void	FilterLabelsByOverlapAlgorithm.LabelFilterSettings.setOutputOverlaps(boolean outputOverlaps)
void	FilterLabelsByOverlapAlgorithm.LabelFilterSettings.setOverlapFilter(JIPipeExpressionParameter overlapFilter)
void	FilterLabelsByOverlapAlgorithm.setOverlapFilterMeasurements(ImageStatisticsSetParameter overlapFilterMeasurements)
void	FilterLabelsByIdAlgorithm.setValues(IntegerRange values)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.lut

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.lut with annotations of type JIPipeParameter

Modifier and Type	Method and Description
ColorMap	SetLUTFromColorMapAlgorithm.getColorMap()
Color	SetLUTFromColorsAlgorithm.getFirstColor()
OptionalIntegerRange	SetLUTFromImageAlgorithm.getRestrictToChannels()
OptionalIntegerRange	RemoveLUTAlgorithm.getRestrictToChannels()
OptionalIntegerRange	SetLUTFromColorsAlgorithm.getRestrictToChannels()
OptionalIntegerRange	SetLUTFromColorMapAlgorithm.getRestrictToChannels()
Color	SetLUTFromColorsAlgorithm.getSecondColor()
boolean	LUTInverterAlgorithm.isApplyToAllPlanes()
boolean	SetLUTFromImageAlgorithm.isDuplicateImage()
boolean	RemoveLUTAlgorithm.isDuplicateImage()
boolean	LUTInverterAlgorithm.isDuplicateImage()
boolean	SetLUTFromColorsAlgorithm.isDuplicateImage()
boolean	SetLUTFromColorMapAlgorithm.isDuplicateImage()
void	LUTInverterAlgorithm.setApplyToAllPlanes(boolean applyToAllPlanes)
void	SetLUTFromColorMapAlgorithm.setColorMap(ColorMap colorMap)
void	SetLUTFromImageAlgorithm.setDuplicateImage(boolean duplicateImage)
void	RemoveLUTAlgorithm.setDuplicateImage(boolean duplicateImage)
void	LUTInverterAlgorithm.setDuplicateImage(boolean duplicateImage)
void	SetLUTFromColorsAlgorithm.setDuplicateImage(boolean duplicateImage)
void	SetLUTFromColorMapAlgorithm.setDuplicateImage(boolean duplicateImage)
void	SetLUTFromColorsAlgorithm.setFirstColor(Color firstColor)
void	SetLUTFromImageAlgorithm.setRestrictToChannels(OptionalIntegerRange restrictToChannels)
void	RemoveLUTAlgorithm.setRestrictToChannels(OptionalIntegerRange restrictToChannels)
void	SetLUTFromColorsAlgorithm.setRestrictToChannels(OptionalIntegerRange restrictToChannels)
void	SetLUTFromColorMapAlgorithm.setRestrictToChannels(OptionalIntegerRange restrictToChannels)
void	SetLUTFromColorsAlgorithm.setSecondColor(Color secondColor)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.masking

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.masking with annotations of type JIPipeParameter

Modifier and Type	Method and Description
Color	SetToColorAlgorithm.getColor()
SetToContentAwareAlgorithm.Method	SetToContentAwareAlgorithm.getMethod()
double	SetToValueAlgorithm.getValue()
void	SetToColorAlgorithm.setColor(Color color)
void	SetToContentAwareAlgorithm.setMethod(SetToContentAwareAlgorithm.Method method)
void	SetToValueAlgorithm.setValue(double value)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.math

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.math with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalBitDepth	FastImageArithmeticsAlgorithm.getBitDepth()
HyperstackDimension	ApplyVectorMathExpression2DAlgorithm.getComponentDimension()
HyperstackDimension	GenerateVectorFromMathExpression.getComponentDimension()
int	RoundFloatImageAlgorithm.getDecimals()
EigenvalueSelection2D	Hessian2DAlgorithm.getEigenvalueSelection2D() Deprecated.
JIPipeExpressionParameter	FastImageArithmeticsAlgorithm.getExpression()
JIPipeExpressionParameter	ImageCalculator2DExpression.getExpression()
JIPipeExpressionParameter	ApplyColorMathExpression2DExpression.getExpression()
JIPipeExpressionParameter	GenerateFromMathExpression2D.getFunction()
JIPipeExpressionParameter	GenerateVectorFromMathExpression.getFunction()
int	GenerateFromMathExpression2D.getHeight()
int	GenerateVectorFromMathExpression.getHeight()
InputSlotMapParameterCollection	ImageComparer2DAlgorithm.getOperands() Deprecated.
InputSlotMapParameterCollection	LegacyImageCalculator2DAlgorithm.getOperands() Deprecated.
ImageComparer2DAlgorithm.Operation	ImageComparer2DAlgorithm.getOperation() Deprecated.
LegacyImageCalculator2DAlgorithm.Operation	LegacyImageCalculator2DMergingAlgorithm.getOperation() Deprecated.
LegacyImageCalculator2DAlgorithm.Operation	LegacyImageCalculator2DAlgorithm.getOperation() Deprecated.
JIPipeDataInfoRef	ApplyColorMathExpression2DExpression.getOutputType()
int	ApplyVectorMathExpression2DAlgorithm.getOutputVectorSize()
double	RemoveNaNFilter2DAlgorithm.getRadius()
int	GenerateFromMathExpression2D.getSizeC()
int	GenerateVectorFromMathExpression.getSizeC()
int	GenerateFromMathExpression2D.getSizeT()
int	GenerateVectorFromMathExpression.getSizeT()
int	GenerateFromMathExpression2D.getSizeZ()
int	GenerateVectorFromMathExpression.getSizeZ()
double	Hessian2DAlgorithm.getSmoothing() Deprecated.
LegacyApplyMath2DAlgorithm.Transformation	LegacyApplyMath2DAlgorithm.getTransformation() Deprecated.
JIPipeExpressionParameter	ApplyVectorMathExpression2DAlgorithm.getTransformation()
JIPipeExpressionParameter	ApplyMathExpression2DAlgorithm.getTransformation()
ApplyTransform2DAlgorithm.Transformation	ApplyTransform2DAlgorithm.getTransformation()
double	LegacyApplyMath2DAlgorithm.getValue() Deprecated.
int	GenerateFromMathExpression2D.getWidth()
int	GenerateVectorFromMathExpression.getWidth()
boolean	Hessian2DAlgorithm.isCompareAbsolute() Deprecated.
boolean	LegacyImageCalculator2DMergingAlgorithm.isFloatingPointOutput() Deprecated.
boolean	LegacyImageCalculator2DAlgorithm.isFloatingPointOutput() Deprecated.
boolean	ImageComparer2DAlgorithm.isInvert() Deprecated.
boolean	DivideByMaximumAlgorithm.isRecalibrate()
void	FastImageArithmeticsAlgorithm.setBitDepth(OptionalBitDepth bitDepth)
void	Hessian2DAlgorithm.setCompareAbsolute(boolean compareAbsolute) Deprecated.
void	ApplyVectorMathExpression2DAlgorithm.setComponentDimension(HyperstackDimension componentDimension)
void	GenerateVectorFromMathExpression.setComponentDimension(HyperstackDimension componentDimension)
void	RoundFloatImageAlgorithm.setDecimals(int decimals)
void	Hessian2DAlgorithm.setEigenvalueSelection2D(EigenvalueSelection2D eigenvalueSelection2D) Deprecated.
void	FastImageArithmeticsAlgorithm.setExpression(JIPipeExpressionParameter expression)
void	ImageCalculator2DExpression.setExpression(JIPipeExpressionParameter expression)
void	ApplyColorMathExpression2DExpression.setExpression(JIPipeExpressionParameter expression)
void	LegacyImageCalculator2DMergingAlgorithm.setFloatingPointOutput(boolean floatingPointOutput) Deprecated.
void	LegacyImageCalculator2DAlgorithm.setFloatingPointOutput(boolean floatingPointOutput) Deprecated.
void	GenerateFromMathExpression2D.setFunction(JIPipeExpressionParameter transformation)
void	GenerateVectorFromMathExpression.setFunction(JIPipeExpressionParameter transformation)
void	GenerateFromMathExpression2D.setHeight(int height)
void	GenerateVectorFromMathExpression.setHeight(int height)
void	ImageComparer2DAlgorithm.setInvert(boolean invert) Deprecated.
void	ImageComparer2DAlgorithm.setOperation(ImageComparer2DAlgorithm.Operation operation) Deprecated.
void	LegacyImageCalculator2DMergingAlgorithm.setOperation(LegacyImageCalculator2DAlgorithm.Operation operation) Deprecated.
void	LegacyImageCalculator2DAlgorithm.setOperation(LegacyImageCalculator2DAlgorithm.Operation operation) Deprecated.
void	ApplyColorMathExpression2DExpression.setOutputType(JIPipeDataInfoRef outputType)
void	ApplyVectorMathExpression2DAlgorithm.setOutputVectorSize(int outputVectorSize)
boolean	RemoveNaNFilter2DAlgorithm.setRadius(double radius)
void	DivideByMaximumAlgorithm.setRecalibrate(boolean recalibrate)
void	GenerateFromMathExpression2D.setSizeC(int sizeC)
void	GenerateVectorFromMathExpression.setSizeC(int sizeC)
void	GenerateFromMathExpression2D.setSizeT(int sizeT)
void	GenerateVectorFromMathExpression.setSizeT(int sizeT)
void	GenerateFromMathExpression2D.setSizeZ(int sizeZ)
void	GenerateVectorFromMathExpression.setSizeZ(int sizeZ)
void	Hessian2DAlgorithm.setSmoothing(double smoothing) Deprecated.
void	ApplyTransform2DAlgorithm.setTransformation(ApplyTransform2DAlgorithm.Transformation transformation)
void	ApplyVectorMathExpression2DAlgorithm.setTransformation(JIPipeExpressionParameter transformation)
void	ApplyMathExpression2DAlgorithm.setTransformation(JIPipeExpressionParameter transformation)
void	LegacyApplyMath2DAlgorithm.setTransformation(LegacyApplyMath2DAlgorithm.Transformation transformation) Deprecated.
void	LegacyApplyMath2DAlgorithm.setValue(double value) Deprecated.
void	GenerateFromMathExpression2D.setWidth(int width)
void	GenerateVectorFromMathExpression.setWidth(int width)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.math.distancemap

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.math.distancemap with annotations of type JIPipeParameter

Modifier and Type	Method and Description
int	ApplyDistanceTransform2DAlgorithm.getBackgroundValue()
inra.ijpb.binary.ChamferWeights3D	LabelChamferDistanceMap3DAlgorithm.getChamferWeights()
inra.ijpb.binary.ChamferWeights3D	ChamferDistanceMap3DAlgorithm.getChamferWeights()
inra.ijpb.binary.ChamferWeights	GeodesicDistanceMap2DAlgorithm.getChamferWeights()
inra.ijpb.binary.ChamferWeights	ChamferDistanceMap2DAlgorithm.getChamferWeights()
JIPipeDataInfoRef	LabelChamferDistanceMap3DAlgorithm.getOutputType()
JIPipeDataInfoRef	ChamferDistanceMap3DAlgorithm.getOutputType()
JIPipeDataInfoRef	GeodesicDistanceMap2DAlgorithm.getOutputType()
JIPipeDataInfoRef	ChamferDistanceMap2DAlgorithm.getOutputType()
boolean	ApplyDistanceTransform2DAlgorithm.isEdgesAreBackground()
boolean	LabelChamferDistanceMap3DAlgorithm.isNormalize()
boolean	ChamferDistanceMap3DAlgorithm.isNormalize()
boolean	GeodesicDistanceMap2DAlgorithm.isNormalize()
boolean	ChamferDistanceMap2DAlgorithm.isNormalize()
void	ApplyDistanceTransform2DAlgorithm.setBackgroundValue(int backgroundValue)
void	GeodesicDistanceMap2DAlgorithm.setChamferWeights(inra.ijpb.binary.ChamferWeights chamferWeights)
void	ChamferDistanceMap2DAlgorithm.setChamferWeights(inra.ijpb.binary.ChamferWeights chamferWeights)
void	LabelChamferDistanceMap3DAlgorithm.setChamferWeights(inra.ijpb.binary.ChamferWeights3D chamferWeights)
void	ChamferDistanceMap3DAlgorithm.setChamferWeights(inra.ijpb.binary.ChamferWeights3D chamferWeights)
void	ApplyDistanceTransform2DAlgorithm.setEdgesAreBackground(boolean edgesAreBackground)
void	LabelChamferDistanceMap3DAlgorithm.setNormalize(boolean normalize)
void	ChamferDistanceMap3DAlgorithm.setNormalize(boolean normalize)
void	GeodesicDistanceMap2DAlgorithm.setNormalize(boolean normalize)
void	ChamferDistanceMap2DAlgorithm.setNormalize(boolean normalize)
void	LabelChamferDistanceMap3DAlgorithm.setOutputType(JIPipeDataInfoRef outputType)
void	ChamferDistanceMap3DAlgorithm.setOutputType(JIPipeDataInfoRef outputType)
void	GeodesicDistanceMap2DAlgorithm.setOutputType(JIPipeDataInfoRef outputType)
void	ChamferDistanceMap2DAlgorithm.setOutputType(JIPipeDataInfoRef outputType)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.math.local

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.math.local with annotations of type JIPipeParameter

Modifier and Type	Method and Description
Neighborhood2D	ExtendedMaxima2DAlgorithm.getConnectivity()
Neighborhood2D	ExtendedMinima2DAlgorithm.getConnectivity()
Neighborhood3D	RegionalMinima3DAlgorithm.getConnectivity()
Neighborhood2D	RegionalMinima2DAlgorithm.getConnectivity()
Neighborhood3D	ExtendedMaxima3DAlgorithm.getConnectivity()
Neighborhood2D	RegionalMaxima2DAlgorithm.getConnectivity()
Neighborhood3D	ExtendedMinima3DAlgorithm.getConnectivity()
Neighborhood3D	RegionalMaxima3DAlgorithm.getConnectivity()
double	ExtendedMaxima2DAlgorithm.getDynamic()
double	ExtendedMinima2DAlgorithm.getDynamic()
double	ExtendedMaxima3DAlgorithm.getDynamic()
double	ExtendedMinima3DAlgorithm.getDynamic()
JIPipeExpressionParameter	LocalImageCalculator2DExpression.getExpression()
int	LocalImageCalculator2DExpression.getLocalWindowHeight()
int	LocalImageCalculator2DExpression.getLocalWindowWidth()
double	LocalMaximumFilter2DAlgorithm.getRadius()
double	LocalVarianceFilter2DAlgorithm.getRadius()
double	LocalMinimumFilter2DAlgorithm.getRadius()
float	LocalVarianceFilter3DAlgorithm.getRadiusX()
float	LocalMaximumFilter3DAlgorithm.getRadiusX()
float	LocalMinimumFilter3DAlgorithm.getRadiusX()
float	LocalVarianceFilter3DAlgorithm.getRadiusY()
float	LocalMaximumFilter3DAlgorithm.getRadiusY()
float	LocalMinimumFilter3DAlgorithm.getRadiusY()
float	LocalVarianceFilter3DAlgorithm.getRadiusZ()
float	LocalMaximumFilter3DAlgorithm.getRadiusZ()
float	LocalMinimumFilter3DAlgorithm.getRadiusZ()
SourceWrapMode	LocalImageCalculator2DExpression.getSourceWrapMode()
void	ExtendedMaxima2DAlgorithm.setConnectivity(Neighborhood2D connectivity)
void	ExtendedMinima2DAlgorithm.setConnectivity(Neighborhood2D connectivity)
void	RegionalMinima2DAlgorithm.setConnectivity(Neighborhood2D connectivity)
void	RegionalMaxima2DAlgorithm.setConnectivity(Neighborhood2D connectivity)
void	RegionalMinima3DAlgorithm.setConnectivity(Neighborhood3D connectivity)
void	ExtendedMaxima3DAlgorithm.setConnectivity(Neighborhood3D connectivity)
void	ExtendedMinima3DAlgorithm.setConnectivity(Neighborhood3D connectivity)
void	RegionalMaxima3DAlgorithm.setConnectivity(Neighborhood3D connectivity)
void	ExtendedMaxima2DAlgorithm.setDynamic(double dynamic)
void	ExtendedMinima2DAlgorithm.setDynamic(double dynamic)
void	ExtendedMaxima3DAlgorithm.setDynamic(double dynamic)
void	ExtendedMinima3DAlgorithm.setDynamic(double dynamic)
void	LocalImageCalculator2DExpression.setExpression(JIPipeExpressionParameter expression)
void	LocalImageCalculator2DExpression.setLocalWindowHeight(int localWindowHeight)
void	LocalImageCalculator2DExpression.setLocalWindowWidth(int localWindowWidth)
boolean	LocalMaximumFilter2DAlgorithm.setRadius(double radius)
boolean	LocalVarianceFilter2DAlgorithm.setRadius(double radius)
boolean	LocalMinimumFilter2DAlgorithm.setRadius(double radius)
void	LocalVarianceFilter3DAlgorithm.setRadiusX(float radiusX)
void	LocalMaximumFilter3DAlgorithm.setRadiusX(float radiusX)
void	LocalMinimumFilter3DAlgorithm.setRadiusX(float radiusX)
void	LocalVarianceFilter3DAlgorithm.setRadiusY(float radiusY)
void	LocalMaximumFilter3DAlgorithm.setRadiusY(float radiusY)
void	LocalMinimumFilter3DAlgorithm.setRadiusY(float radiusY)
void	LocalVarianceFilter3DAlgorithm.setRadiusZ(float radiusZ)
void	LocalMaximumFilter3DAlgorithm.setRadiusZ(float radiusZ)
void	LocalMinimumFilter3DAlgorithm.setRadiusZ(float radiusZ)
void	LocalImageCalculator2DExpression.setSourceWrapMode(SourceWrapMode sourceWrapMode)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.metadata

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.metadata with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeExpressionParameter	RemoveImageMetadataAlgorithm.getFilterExpression()
OptionalJIPipeExpressionParameter	ChangeImageMetadataFromExpressionsAlgorithm.getImageTitle()
boolean	SetImageMetadataFromTableAlgorithm.isClearBeforeWrite()
void	SetImageMetadataFromTableAlgorithm.setClearBeforeWrite(boolean clearBeforeWrite)
void	RemoveImageMetadataAlgorithm.setFilterExpression(JIPipeExpressionParameter filterExpression)
void	ChangeImageMetadataFromExpressionsAlgorithm.setImageTitle(OptionalJIPipeExpressionParameter imageTitle)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.misc

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.misc with annotations of type JIPipeParameter

Modifier and Type	Method and Description
int	DataToPreviewAlgorithm.getPreviewHeight()
int	DataToPreviewAlgorithm.getPreviewWidth()
RenderPipelineRunSettings	RenderJIPipeProjectAlgorithm.getSettings()
void	DataToPreviewAlgorithm.setPreviewHeight(int previewHeight)
void	DataToPreviewAlgorithm.setPreviewWidth(int previewWidth)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.montage

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.montage with annotations of type JIPipeParameter

Modifier and Type	Method and Description
Color	InputImagesToMontage.getBackgroundColor() Deprecated.
Color	StackToMontageAlgorithm.getBackgroundColor() Deprecated.
int	InputImagesToMontage.getBorderWidth() Deprecated.
int	MontageToStackAlgorithm.getBorderWidth()
int	StackToMontageAlgorithm.getBorderWidth() Deprecated.
CanvasEqualizer	InputImagesToMontage.getCanvasEqualizer() Deprecated.
OptionalIntegerParameter	InputImagesToMontage.getColumns() Deprecated.
int	MontageToStackAlgorithm.getColumns()
OptionalIntegerParameter	StackToMontageAlgorithm.getColumns() Deprecated.
OptionalIntegerParameter	StackToMontageAlgorithm.getFirstIndex() Deprecated.
int	InputImagesToMontage.getFontSize() Deprecated.
int	StackToMontageAlgorithm.getFontSize() Deprecated.
Color	InputImagesToMontage.getForegroundColor() Deprecated.
Color	StackToMontageAlgorithm.getForegroundColor() Deprecated.
int	StackToMontageAlgorithm.getIndexIncrement() Deprecated.
JIPipeDataByMetadataExporter	InputImagesToMontage.getLabelGenerator() Deprecated.
OptionalIntegerParameter	StackToMontageAlgorithm.getLastIndex() Deprecated.
MontageCreator	InputImagesToMontage2.getMontageCreator()
MontageCreator	StackToMontage2Algorithm.getMontageCreator()
OptionalIntegerParameter	InputImagesToMontage.getRows() Deprecated.
int	MontageToStackAlgorithm.getRows()
OptionalIntegerParameter	StackToMontageAlgorithm.getRows() Deprecated.
double	InputImagesToMontage.getScale() Deprecated.
double	StackToMontageAlgorithm.getScale() Deprecated.
JIPipeExpressionParameter	StackToMontage2Algorithm.getSliceFilter()
JIPipeDataByMetadataExporter	InputImagesToMontage.getSortingLabelGenerator() Deprecated.
boolean	InputImagesToMontage.isDrawLabels() Deprecated.
boolean	StackToMontageAlgorithm.isLabels() Deprecated.
void	InputImagesToMontage.setBackgroundColor(Color backgroundColor) Deprecated.
void	StackToMontageAlgorithm.setBackgroundColor(Color backgroundColor) Deprecated.
void	InputImagesToMontage.setBorderWidth(int borderWidth) Deprecated.
void	MontageToStackAlgorithm.setBorderWidth(int borderWidth)
void	StackToMontageAlgorithm.setBorderWidth(int borderWidth) Deprecated.
void	MontageToStackAlgorithm.setColumns(int columns)
void	InputImagesToMontage.setColumns(OptionalIntegerParameter columns) Deprecated.
void	StackToMontageAlgorithm.setColumns(OptionalIntegerParameter columns) Deprecated.
void	InputImagesToMontage.setDrawLabels(boolean drawLabels) Deprecated.
void	StackToMontageAlgorithm.setFirstIndex(OptionalIntegerParameter firstIndex) Deprecated.
void	InputImagesToMontage.setFontSize(int fontSize) Deprecated.
void	StackToMontageAlgorithm.setFontSize(int fontSize) Deprecated.
void	InputImagesToMontage.setForegroundColor(Color foregroundColor) Deprecated.
void	StackToMontageAlgorithm.setForegroundColor(Color foregroundColor) Deprecated.
void	StackToMontageAlgorithm.setIndexIncrement(int indexIncrement) Deprecated.
void	StackToMontageAlgorithm.setLabels(boolean labels) Deprecated.
void	StackToMontageAlgorithm.setLastIndex(OptionalIntegerParameter lastIndex) Deprecated.
void	MontageToStackAlgorithm.setRows(int rows)
void	InputImagesToMontage.setRows(OptionalIntegerParameter rows) Deprecated.
void	StackToMontageAlgorithm.setRows(OptionalIntegerParameter rows) Deprecated.
void	InputImagesToMontage.setScale(double scale) Deprecated.
void	StackToMontageAlgorithm.setScale(double scale) Deprecated.
void	StackToMontage2Algorithm.setSliceFilter(JIPipeExpressionParameter sliceFilter)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.morphology

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.morphology with annotations of type JIPipeParameter

Modifier and Type	Method and Description
AddBorder2DAlgorithm	Morphology2DAlgorithm.getAddBorder2DAlgorithm()
GrayscaleAttributeFiltering2DAlgorithm.Attribute	GrayscaleAttributeFiltering2DAlgorithm.getAttribute()
GrayscaleAttributeFiltering3DAlgorithm.Attribute	GrayscaleAttributeFiltering3DAlgorithm.getAttribute()
Neighborhood2D	MorphologicalReconstruction2DAlgorithm.getConnectivity()
Neighborhood2D	MorphologicalReconstruction3DAlgorithm.getConnectivity()
Neighborhood2D	GrayscaleAttributeFiltering2DAlgorithm.getConnectivity()
Neighborhood3D	GrayscaleAttributeFiltering3DAlgorithm.getConnectivity()
inra.ijpb.morphology.Strel.Shape	Morphology2DAlgorithm.getElement()
inra.ijpb.morphology.Strel3D.Shape	Morphology3DAlgorithm.getElement()
int	MorphologyBinary2DAlgorithm.getIterations()
int	GrayscaleAttributeFiltering2DAlgorithm.getMinimumValue()
int	GrayscaleAttributeFiltering3DAlgorithm.getMinVoxelNumber()
inra.ijpb.morphology.Morphology.Operation	Morphology2DAlgorithm.getOperation()
inra.ijpb.morphology.Morphology.Operation	Morphology3DAlgorithm.getOperation()
MorphologyBinary2DAlgorithm.Operation	MorphologyBinary2DAlgorithm.getOperation()
GrayscaleAttributeFiltering2DAlgorithm.Operation	GrayscaleAttributeFiltering2DAlgorithm.getOperation()
GrayscaleAttributeFiltering3DAlgorithm.Operation	GrayscaleAttributeFiltering3DAlgorithm.getOperation()
int	Morphology2DAlgorithm.getRadius()
int	Morphology3DAlgorithm.getRadius()
double	MorphologyInternalGradient2DAlgorithm.getRadius()
boolean	Morphology2DAlgorithm.isAddBorder()
boolean	MorphologicalReconstruction2DAlgorithm.isApplyDilation()
boolean	MorphologicalReconstruction3DAlgorithm.isApplyDilation()
boolean	FindHoles2DAlgorithm.isBlackBackground()
boolean	MorphologyFillHoles2DAlgorithm.isBlackBackground()
boolean	MorphologySkeletonize2DAlgorithm.isDarkBackground()
void	Morphology2DAlgorithm.setAddBorder(boolean addBorder)
void	MorphologicalReconstruction2DAlgorithm.setApplyDilation(boolean applyDilation)
void	MorphologicalReconstruction3DAlgorithm.setApplyDilation(boolean applyDilation)
void	GrayscaleAttributeFiltering2DAlgorithm.setAttribute(GrayscaleAttributeFiltering2DAlgorithm.Attribute attribute)
void	GrayscaleAttributeFiltering3DAlgorithm.setAttribute(GrayscaleAttributeFiltering3DAlgorithm.Attribute attribute)
void	FindHoles2DAlgorithm.setBlackBackground(boolean blackBackground)
void	MorphologyFillHoles2DAlgorithm.setBlackBackground(boolean blackBackground)
void	MorphologicalReconstruction2DAlgorithm.setConnectivity(Neighborhood2D connectivity)
void	MorphologicalReconstruction3DAlgorithm.setConnectivity(Neighborhood2D connectivity)
void	GrayscaleAttributeFiltering2DAlgorithm.setConnectivity(Neighborhood2D connectivity)
void	GrayscaleAttributeFiltering3DAlgorithm.setConnectivity(Neighborhood3D connectivity)
void	MorphologySkeletonize2DAlgorithm.setDarkBackground(boolean darkBackground)
void	Morphology2DAlgorithm.setElement(inra.ijpb.morphology.Strel.Shape element)
void	Morphology3DAlgorithm.setElement(inra.ijpb.morphology.Strel3D.Shape element)
void	MorphologyBinary2DAlgorithm.setIterations(int iterations)
void	GrayscaleAttributeFiltering2DAlgorithm.setMinimumValue(int minimumValue)
void	GrayscaleAttributeFiltering3DAlgorithm.setMinVoxelNumber(int minVoxelNumber)
void	GrayscaleAttributeFiltering2DAlgorithm.setOperation(GrayscaleAttributeFiltering2DAlgorithm.Operation operation)
void	GrayscaleAttributeFiltering3DAlgorithm.setOperation(GrayscaleAttributeFiltering3DAlgorithm.Operation operation)
void	Morphology2DAlgorithm.setOperation(inra.ijpb.morphology.Morphology.Operation operation)
void	Morphology3DAlgorithm.setOperation(inra.ijpb.morphology.Morphology.Operation operation)
void	MorphologyBinary2DAlgorithm.setOperation(MorphologyBinary2DAlgorithm.Operation operation)
void	MorphologyInternalGradient2DAlgorithm.setRadius(double radius)
void	Morphology2DAlgorithm.setRadius(int radius)
void	Morphology3DAlgorithm.setRadius(int radius)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.noise

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.noise with annotations of type JIPipeParameter

Modifier and Type	Method and Description
RemoveOutliersFilter2DAlgorithm.Mode	RemoveOutliersFilter2DAlgorithm.getMode()
double	AddSaltAndPepperNoise2DAlgorithm.getPercent()
double	RemoveOutliersFilter2DAlgorithm.getRadius()
double	AddNoise2DAlgorithm.getSigma()
float	RemoveOutliersFilter2DAlgorithm.getThreshold()
void	RemoveOutliersFilter2DAlgorithm.setMode(RemoveOutliersFilter2DAlgorithm.Mode mode)
void	AddSaltAndPepperNoise2DAlgorithm.setPercent(double percent)
boolean	RemoveOutliersFilter2DAlgorithm.setRadius(double radius)
void	AddNoise2DAlgorithm.setSigma(double sigma)
boolean	RemoveOutliersFilter2DAlgorithm.setThreshold(float threshold)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.ome

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.ome with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OMEAccessorParameter	OMEMetadataToTableAlgorithm.Entry.getAccessor()
OMEAccessorParameter	AnnotateOMEWithMetadataAlgorithm.Entry.getAccessor()
JIPipeTextAnnotationMergeMode	AnnotateOMEWithMetadataAlgorithm.getAnnotationMergeMode()
JIPipeExpressionParameter	AnnotateOMEWithMetadataAlgorithm.Entry.getAnnotationName()
JIPipeExpressionParameter	OMEMetadataToTableAlgorithm.Entry.getColumnName()
ParameterCollectionList	OMEMetadataToTableAlgorithm.getEntries()
ParameterCollectionList	AnnotateOMEWithMetadataAlgorithm.getEntries()
void	OMEMetadataToTableAlgorithm.Entry.setAccessor(OMEAccessorParameter accessor)
void	AnnotateOMEWithMetadataAlgorithm.Entry.setAccessor(OMEAccessorParameter accessor)
void	AnnotateOMEWithMetadataAlgorithm.setAnnotationMergeMode(JIPipeTextAnnotationMergeMode annotationMergeMode)
void	AnnotateOMEWithMetadataAlgorithm.Entry.setAnnotationName(JIPipeExpressionParameter annotationName)
void	OMEMetadataToTableAlgorithm.Entry.setColumnName(JIPipeExpressionParameter columnName)
void	OMEMetadataToTableAlgorithm.setEntries(ParameterCollectionList entries)
void	AnnotateOMEWithMetadataAlgorithm.setEntries(ParameterCollectionList entries)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.opticalflow

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.opticalflow with annotations of type JIPipeParameter

Modifier and Type	Method and Description
int	PMCCBlockFlowAlgorithm.getBlockRadius()
int	MSEBlockFlowAlgorithm.getBlockRadius()
int	MSEGaussianFlowAlgorithm.getMaxDistance()
int	PMCCBlockFlowAlgorithm.getMaxDistance()
int	MSEBlockFlowAlgorithm.getMaxDistance()
int	MSEGaussianFlowAlgorithm.getSigma()
boolean	MSEGaussianFlowAlgorithm.isAddLastIdentityField()
boolean	PMCCBlockFlowAlgorithm.isAddLastIdentityField()
boolean	MSEBlockFlowAlgorithm.isAddLastIdentityField()
boolean	MSEGaussianFlowAlgorithm.isOutputPolarCoordinates()
boolean	PMCCBlockFlowAlgorithm.isOutputPolarCoordinates()
boolean	MSEBlockFlowAlgorithm.isOutputPolarCoordinates()
boolean	MSEGaussianFlowAlgorithm.isRelativeDistances()
boolean	PMCCBlockFlowAlgorithm.isRelativeDistances()
boolean	MSEBlockFlowAlgorithm.isRelativeDistances()
void	MSEGaussianFlowAlgorithm.setAddLastIdentityField(boolean addLastIdentityField)
void	PMCCBlockFlowAlgorithm.setAddLastIdentityField(boolean addLastIdentityField)
void	MSEBlockFlowAlgorithm.setAddLastIdentityField(boolean addLastIdentityField)
boolean	MSEGaussianFlowAlgorithm.setBlockRadius(int blockRadius)
boolean	PMCCBlockFlowAlgorithm.setBlockRadius(int blockRadius)
boolean	MSEBlockFlowAlgorithm.setBlockRadius(int blockRadius)
boolean	MSEGaussianFlowAlgorithm.setMaxDistance(int maxDistance)
boolean	PMCCBlockFlowAlgorithm.setMaxDistance(int maxDistance)
boolean	MSEBlockFlowAlgorithm.setMaxDistance(int maxDistance)
void	MSEGaussianFlowAlgorithm.setOutputPolarCoordinates(boolean outputPolarCoordinates)
void	PMCCBlockFlowAlgorithm.setOutputPolarCoordinates(boolean outputPolarCoordinates)
void	MSEBlockFlowAlgorithm.setOutputPolarCoordinates(boolean outputPolarCoordinates)
void	MSEGaussianFlowAlgorithm.setRelativeDistances(boolean relativeDistances)
void	PMCCBlockFlowAlgorithm.setRelativeDistances(boolean relativeDistances)
void	MSEBlockFlowAlgorithm.setRelativeDistances(boolean relativeDistances)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.overlay

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.overlay with annotations of type JIPipeParameter

Modifier and Type	Method and Description
ROIElementDrawingMode	RenderOverlayAlgorithm.getDrawFilledOutlineMode()
RoiLabel	RenderOverlayAlgorithm.getDrawnLabel()
ROIElementDrawingMode	RenderOverlayAlgorithm.getDrawOutlineMode()
OptionalColorParameter	RenderOverlayAlgorithm.getLabelBackground()
Color	RenderOverlayAlgorithm.getLabelForeground()
int	RenderOverlayAlgorithm.getLabelSize()
double	RenderOverlayAlgorithm.getMagnification()
double	RenderOverlayAlgorithm.getOpacity()
OptionalColorParameter	RenderOverlayAlgorithm.getOverrideFillColor()
OptionalColorParameter	RenderOverlayAlgorithm.getOverrideLineColor()
OptionalDoubleParameter	RenderOverlayAlgorithm.getOverrideLineWidth()
boolean	RenderOverlayAlgorithm.isIgnoreC()
boolean	RenderOverlayAlgorithm.isIgnoreT()
boolean	RenderOverlayAlgorithm.isIgnoreZ()
boolean	RenderOverlayAlgorithm.isPreferRenderViaOverlay()
void	RenderOverlayAlgorithm.setDrawFilledOutlineMode(ROIElementDrawingMode drawFilledOutlineMode)
void	RenderOverlayAlgorithm.setDrawnLabel(RoiLabel drawnLabel)
void	RenderOverlayAlgorithm.setDrawOutlineMode(ROIElementDrawingMode drawOutlineMode)
void	RenderOverlayAlgorithm.setIgnoreC(boolean ignoreC)
void	RenderOverlayAlgorithm.setIgnoreT(boolean ignoreT)
void	RenderOverlayAlgorithm.setIgnoreZ(boolean ignoreZ)
void	RenderOverlayAlgorithm.setLabelBackground(OptionalColorParameter labelBackground)
void	RenderOverlayAlgorithm.setLabelForeground(Color labelForeground)
boolean	RenderOverlayAlgorithm.setLabelSize(int labelSize)
void	RenderOverlayAlgorithm.setMagnification(double magnification)
boolean	RenderOverlayAlgorithm.setOpacity(double opacity)
void	RenderOverlayAlgorithm.setOverrideFillColor(OptionalColorParameter overrideFillColor)
void	RenderOverlayAlgorithm.setOverrideLineColor(OptionalColorParameter overrideLineColor)
void	RenderOverlayAlgorithm.setOverrideLineWidth(OptionalDoubleParameter overrideLineWidth)
void	RenderOverlayAlgorithm.setPreferRenderViaOverlay(boolean preferRenderViaOverlay)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.registration.simple

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.registration.simple with annotations of type JIPipeParameter

Modifier and Type	Method and Description
SimpleBUnwarpJParameters	SimpleImageRegistrationAlgorithm.getbUnwarpJParameters()
double	SimpleBUnwarpJParameters.getConsistencyWeight()
double	SimpleBUnwarpJParameters.getCurlWeight()
double	SimpleBUnwarpJParameters.getDivergenceWeight()
int	SIFTParameters.getFeatureDescriptorOrientationBins()
int	SIFTParameters.getFeatureDescriptorSize()
SimpleImageRegistrationFeatureModel	SimpleImageRegistrationParameters.getImageRegistrationFeatureModel()
SimpleImageRegistrationModel	SimpleImageRegistrationParameters.getImageRegistrationModel()
int	SimpleBUnwarpJParameters.getImageSubsamplingFactor()
double	SimpleBUnwarpJParameters.getImageWeight()
float	SIFTParameters.getInitialSigma()
double	SimpleBUnwarpJParameters.getLandmarkWeight()
float	SimpleImageRegistrationParameters.getMaxEpsilon()
BUnwarpJMaxScaleDeformation	SimpleBUnwarpJParameters.getMaxScaleDeformation()
float	SimpleImageRegistrationParameters.getMinInlierRatio()
BUnwarpJMinScaleDeformation	SimpleBUnwarpJParameters.getMinScaleDeformation()
BUnwarpJMode	SimpleBUnwarpJParameters.getMode()
Vector2iParameter	SIFTParameters.getOctaveSizeLimits()
SimpleImageRegistrationParameters	SimpleImageRegistrationAlgorithm.getParameters()
float	SimpleImageRegistrationParameters.getRod()
SIFTParameters	SimpleImageRegistrationAlgorithm.getSiftParameters()
int	SIFTParameters.getStepsPerScale()
double	SimpleBUnwarpJParameters.getStopThreshold()
boolean	SimpleImageRegistrationParameters.isInterpolate()
void	SimpleBUnwarpJParameters.setConsistencyWeight(double consistencyWeight)
void	SimpleBUnwarpJParameters.setCurlWeight(double curlWeight)
void	SimpleBUnwarpJParameters.setDivergenceWeight(double divergenceWeight)
void	SIFTParameters.setFeatureDescriptorOrientationBins(int featureDescriptorOrientationBins)
void	SIFTParameters.setFeatureDescriptorSize(int featureDescriptorSize)
void	SimpleImageRegistrationParameters.setImageRegistrationFeatureModel(SimpleImageRegistrationFeatureModel imageRegistrationFeatureModel)
void	SimpleImageRegistrationParameters.setImageRegistrationModel(SimpleImageRegistrationModel imageRegistrationModel)
void	SimpleBUnwarpJParameters.setImageSubsamplingFactor(int imageSubsamplingFactor)
void	SimpleBUnwarpJParameters.setImageWeight(double imageWeight)
void	SIFTParameters.setInitialSigma(float initialSigma)
void	SimpleImageRegistrationParameters.setInterpolate(boolean interpolate)
void	SimpleBUnwarpJParameters.setLandmarkWeight(double landmarkWeight)
void	SimpleImageRegistrationParameters.setMaxEpsilon(float maxEpsilon)
void	SimpleBUnwarpJParameters.setMaxScaleDeformation(BUnwarpJMaxScaleDeformation maxScaleDeformation)
void	SimpleImageRegistrationParameters.setMinInlierRatio(float minInlierRatio)
void	SimpleBUnwarpJParameters.setMinScaleDeformation(BUnwarpJMinScaleDeformation minScaleDeformation)
void	SimpleBUnwarpJParameters.setMode(BUnwarpJMode mode)
void	SIFTParameters.setOctaveSizeLimits(Vector2iParameter octaveSizeLimits)
void	SimpleImageRegistrationParameters.setRod(float rod)
void	SIFTParameters.setStepsPerScale(int stepsPerScale)
void	SimpleBUnwarpJParameters.setStopThreshold(double stopThreshold)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.registration.turboreg

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.registration.turboreg with annotations of type JIPipeParameter

Modifier and Type	Method and Description
AdvancedTurboRegParameters	TurboRegRegistration2DReferencedAlgorithm.getAdvancedTurboRegParameters()
AdvancedTurboRegParameters	TurboRegRegistration2DSingleAlgorithm.getAdvancedTurboRegParameters()
JIPipeExpressionParameter	TurboRegRegistrationAlgorithmRule.getCondition()
int	AdvancedTurboRegParameters.getMinSize()
JIPipeExpressionParameter	TurboRegRegistrationAlgorithmRule.getReferenceCIndex()
JIPipeExpressionParameter	TurboRegRegistrationAlgorithmRule.getReferenceTIndex()
JIPipeExpressionParameter	TurboRegRegistrationAlgorithmRule.getReferenceZIndex()
ParameterCollectionList	TurboRegRegistration2DReferencedAlgorithm.getRules()
ParameterCollectionList	TurboRegRegistration2DSingleAlgorithm.getRules()
TurboRegRegistrationAlgorithmRuleType	TurboRegRegistrationAlgorithmRule.getRuleType()
TurboRegTransformationType	TurboRegRegistration2DReferencedAlgorithm.getTransformationType()
TurboRegTransformationType	TurboRegRegistration2DSingleAlgorithm.getTransformationType()
boolean	TurboRegRegistration2DReferencedAlgorithm.isRestoreOriginalAnnotations()
boolean	TurboRegRegistration2DSingleAlgorithm.isRestoreOriginalAnnotations()
void	TurboRegRegistrationAlgorithmRule.setCondition(JIPipeExpressionParameter condition)
void	AdvancedTurboRegParameters.setMinSize(int minSize)
void	TurboRegRegistrationAlgorithmRule.setReferenceCIndex(JIPipeExpressionParameter referenceCIndex)
void	TurboRegRegistrationAlgorithmRule.setReferenceTIndex(JIPipeExpressionParameter referenceTIndex)
void	TurboRegRegistrationAlgorithmRule.setReferenceZIndex(JIPipeExpressionParameter referenceZIndex)
void	TurboRegRegistration2DReferencedAlgorithm.setRestoreOriginalAnnotations(boolean restoreOriginalAnnotations)
void	TurboRegRegistration2DSingleAlgorithm.setRestoreOriginalAnnotations(boolean restoreOriginalAnnotations)
void	TurboRegRegistration2DReferencedAlgorithm.setRules(ParameterCollectionList rules)
void	TurboRegRegistration2DSingleAlgorithm.setRules(ParameterCollectionList rules)
void	TurboRegRegistrationAlgorithmRule.setRuleType(TurboRegRegistrationAlgorithmRuleType ruleType)
void	TurboRegRegistration2DReferencedAlgorithm.setTransformationType(TurboRegTransformationType transformationType)
void	TurboRegRegistration2DSingleAlgorithm.setTransformationType(TurboRegTransformationType transformationType)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalTextAnnotationNameParameter	CropToRoiAlgorithm.getAnnotationBoundingHeight()
OptionalTextAnnotationNameParameter	CropToRoiAlgorithm.getAnnotationBoundingWidth()
OptionalTextAnnotationNameParameter	CropToRoiAlgorithm.getAnnotationC()
JIPipeTextAnnotationMergeMode	CropToRoiAlgorithm.getAnnotationMergeStrategy()
OptionalTextAnnotationNameParameter	CropToRoiAlgorithm.getAnnotationT()
OptionalTextAnnotationNameParameter	CropToRoiAlgorithm.getAnnotationX()
OptionalTextAnnotationNameParameter	CropToRoiAlgorithm.getAnnotationY()
OptionalTextAnnotationNameParameter	CropToRoiAlgorithm.getAnnotationZ()
boolean	CropToRoiAlgorithm.isCropC()
boolean	CropToRoiAlgorithm.isCropT()
boolean	CropToRoiAlgorithm.isCropXY()
boolean	CropToRoiAlgorithm.isCropZ()
void	CropToRoiAlgorithm.setAnnotationBoundingHeight(OptionalTextAnnotationNameParameter annotationBoundingHeight)
void	CropToRoiAlgorithm.setAnnotationBoundingWidth(OptionalTextAnnotationNameParameter annotationBoundingWidth)
void	CropToRoiAlgorithm.setAnnotationC(OptionalTextAnnotationNameParameter annotationC)
void	CropToRoiAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	CropToRoiAlgorithm.setAnnotationT(OptionalTextAnnotationNameParameter annotationT)
void	CropToRoiAlgorithm.setAnnotationX(OptionalTextAnnotationNameParameter annotationX)
void	CropToRoiAlgorithm.setAnnotationY(OptionalTextAnnotationNameParameter annotationY)
void	CropToRoiAlgorithm.setAnnotationZ(OptionalTextAnnotationNameParameter annotationZ)
void	CropToRoiAlgorithm.setCropC(boolean cropC)
void	CropToRoiAlgorithm.setCropT(boolean cropT)
void	CropToRoiAlgorithm.setCropXY(boolean cropXY)
void	CropToRoiAlgorithm.setCropZ(boolean cropZ)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.annotations

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.annotations with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeTextAnnotationMergeMode	RoiPropertiesToAnnotationsAlgorithm.getAnnotationMergeStrategy()
OptionalTextAnnotationNameParameter	RoiPropertiesToAnnotationsAlgorithm.getCountAnnotation()
OptionalTextAnnotationNameParameter	RoiPropertiesToAnnotationsAlgorithm.getFillColorAnnotation()
OptionalTextAnnotationNameParameter	RoiPropertiesToAnnotationsAlgorithm.getLineColorAnnotation()
OptionalTextAnnotationNameParameter	RoiPropertiesToAnnotationsAlgorithm.getLineWidthAnnotation()
OptionalTextAnnotationNameParameter	RoiPropertiesToAnnotationsAlgorithm.getLocationCAnnotation()
OptionalTextAnnotationNameParameter	RoiPropertiesToAnnotationsAlgorithm.getLocationTAnnotation()
OptionalTextAnnotationNameParameter	RoiPropertiesToAnnotationsAlgorithm.getLocationXAnnotation()
OptionalTextAnnotationNameParameter	RoiPropertiesToAnnotationsAlgorithm.getLocationYAnnotation()
OptionalTextAnnotationNameParameter	RoiPropertiesToAnnotationsAlgorithm.getLocationZAnnotation()
OptionalTextAnnotationNameParameter	RoiPropertiesToAnnotationsAlgorithm.getNameAnnotation()
boolean	RoiPropertiesToAnnotationsAlgorithm.isDeduplicate()
boolean	RoiPropertiesToAnnotationsAlgorithm.isOnlyFirst()
void	RoiPropertiesToAnnotationsAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	RoiPropertiesToAnnotationsAlgorithm.setCountAnnotation(OptionalTextAnnotationNameParameter countAnnotation)
void	RoiPropertiesToAnnotationsAlgorithm.setDeduplicate(boolean deduplicate)
void	RoiPropertiesToAnnotationsAlgorithm.setFillColorAnnotation(OptionalTextAnnotationNameParameter fillColorAnnotation)
void	RoiPropertiesToAnnotationsAlgorithm.setLineColorAnnotation(OptionalTextAnnotationNameParameter lineColorAnnotation)
void	RoiPropertiesToAnnotationsAlgorithm.setLineWidthAnnotation(OptionalTextAnnotationNameParameter lineWidthAnnotation)
void	RoiPropertiesToAnnotationsAlgorithm.setLocationCAnnotation(OptionalTextAnnotationNameParameter locationCAnnotation)
void	RoiPropertiesToAnnotationsAlgorithm.setLocationTAnnotation(OptionalTextAnnotationNameParameter locationTAnnotation)
void	RoiPropertiesToAnnotationsAlgorithm.setLocationXAnnotation(OptionalTextAnnotationNameParameter locationXAnnotation)
void	RoiPropertiesToAnnotationsAlgorithm.setLocationYAnnotation(OptionalTextAnnotationNameParameter locationYAnnotation)
void	RoiPropertiesToAnnotationsAlgorithm.setLocationZAnnotation(OptionalTextAnnotationNameParameter locationZAnnotation)
void	RoiPropertiesToAnnotationsAlgorithm.setNameAnnotation(OptionalTextAnnotationNameParameter nameAnnotation)
void	RoiPropertiesToAnnotationsAlgorithm.setOnlyFirst(boolean onlyFirst)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.assemble

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.assemble with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalTextAnnotationNameParameter	ExtractFromROIAlgorithm.getAnnotationBoundingHeight()
OptionalTextAnnotationNameParameter	ExtractFromROIAlgorithm.getAnnotationBoundingWidth()
OptionalTextAnnotationNameParameter	ExtractFromROIAlgorithm.getAnnotationC()
OptionalStringParameter	AssembleExtractedROIAlgorithm.getAnnotationC()
JIPipeTextAnnotationMergeMode	ExtractFromROIAlgorithm.getAnnotationMergeStrategy()
OptionalTextAnnotationNameParameter	ExtractFromROIAlgorithm.getAnnotationT()
OptionalStringParameter	AssembleExtractedROIAlgorithm.getAnnotationT()
OptionalTextAnnotationNameParameter	ExtractFromROIAlgorithm.getAnnotationX()
String	AssembleExtractedROIAlgorithm.getAnnotationX()
OptionalTextAnnotationNameParameter	ExtractFromROIAlgorithm.getAnnotationY()
String	AssembleExtractedROIAlgorithm.getAnnotationY()
OptionalTextAnnotationNameParameter	ExtractFromROIAlgorithm.getAnnotationZ()
OptionalStringParameter	AssembleExtractedROIAlgorithm.getAnnotationZ()
OptionalColorParameter	ExtractFromROIAlgorithm.getOutsideColor()
Anchor	ExtractFromROIAlgorithm.getXyAnchor()
Anchor	AssembleExtractedROIAlgorithm.getXyAnchor()
boolean	AssembleExtractedROIAlgorithm.isDoScaling()
void	ExtractFromROIAlgorithm.setAnnotationBoundingHeight(OptionalTextAnnotationNameParameter annotationBoundingHeight)
void	ExtractFromROIAlgorithm.setAnnotationBoundingWidth(OptionalTextAnnotationNameParameter annotationBoundingWidth)
void	AssembleExtractedROIAlgorithm.setAnnotationC(OptionalStringParameter annotationC)
void	ExtractFromROIAlgorithm.setAnnotationC(OptionalTextAnnotationNameParameter annotationC)
void	ExtractFromROIAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	AssembleExtractedROIAlgorithm.setAnnotationT(OptionalStringParameter annotationT)
void	ExtractFromROIAlgorithm.setAnnotationT(OptionalTextAnnotationNameParameter annotationT)
void	ExtractFromROIAlgorithm.setAnnotationX(OptionalTextAnnotationNameParameter annotationX)
void	AssembleExtractedROIAlgorithm.setAnnotationX(String annotationX)
void	ExtractFromROIAlgorithm.setAnnotationY(OptionalTextAnnotationNameParameter annotationY)
void	AssembleExtractedROIAlgorithm.setAnnotationY(String annotationY)
void	AssembleExtractedROIAlgorithm.setAnnotationZ(OptionalStringParameter annotationZ)
void	ExtractFromROIAlgorithm.setAnnotationZ(OptionalTextAnnotationNameParameter annotationZ)
void	AssembleExtractedROIAlgorithm.setDoScaling(boolean doScaling)
void	ExtractFromROIAlgorithm.setOutsideColor(OptionalColorParameter outsideColor)
void	ExtractFromROIAlgorithm.setXyAnchor(Anchor xyAnchor)
void	AssembleExtractedROIAlgorithm.setXyAnchor(Anchor xyAnchor)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.convert

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.convert with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalTextAnnotationNameParameter	ExtractImageInRoiAlgorithm.getAnnotationCLocation()
OptionalTextAnnotationNameParameter	ExtractImageInRoiAlgorithm.getAnnotationTLocation()
OptionalTextAnnotationNameParameter	ExtractImageInRoiAlgorithm.getAnnotationXLocation()
OptionalTextAnnotationNameParameter	ExtractImageInRoiAlgorithm.getAnnotationYLocation()
OptionalTextAnnotationNameParameter	ExtractImageInRoiAlgorithm.getAnnotationZLocation()
ROIElementDrawingMode	RoiToRGBAlgorithm.getDrawFilledOutlineMode()
ROIElementDrawingMode	UnreferencedRoiToRGBAlgorithm.getDrawFilledOutlineMode()
RoiLabel	RoiToRGBAlgorithm.getDrawnLabel()
ROIElementDrawingMode	RoiToRGBAlgorithm.getDrawOutlineMode()
ROIElementDrawingMode	UnreferencedRoiToRGBAlgorithm.getDrawOutlineMode()
Margin	UnreferencedRoiToRGBAlgorithm.getImageArea()
Margin	UnreferencedRoiToMaskAlgorithm.getImageArea()
int	ROIToLabelsByNameAlgorithm.ROINameToLabelEntry.getLabel()
ParameterCollectionList	ROIToLabelsByNameAlgorithm.getLabelAssignment()
OptionalColorParameter	RoiToRGBAlgorithm.getLabelBackground()
FontFamilyParameter	RoiToRGBAlgorithm.getLabelFontFamily()
Color	RoiToRGBAlgorithm.getLabelForeground()
int	RoiToRGBAlgorithm.getLabelSize()
int	UnreferencedRoiToMaskAlgorithm.getLineThickness()
int	RoiToMaskAlgorithm.getLineThickness()
double	RoiToRGBAlgorithm.getMagnification()
String	ROIToLabelsByNameAlgorithm.ROINameToLabelEntry.getName()
double	RoiToRGBAlgorithm.getOpacity()
OptionalColorParameter	RoiToRGBAlgorithm.getOverrideFillColor()
OptionalColorParameter	UnreferencedRoiToRGBAlgorithm.getOverrideFillColor()
OptionalColorParameter	RoiToRGBAlgorithm.getOverrideLineColor()
OptionalColorParameter	UnreferencedRoiToRGBAlgorithm.getOverrideLineColor()
OptionalDoubleParameter	RoiToRGBAlgorithm.getOverrideLineWidth()
OptionalDoubleParameter	UnreferencedRoiToRGBAlgorithm.getOverrideLineWidth()
OptionalJIPipeExpressionParameter	ROIToLabelsExpressionAlgorithm.getRoiToLabelTransformation()
boolean	UnreferencedRoiToMaskAlgorithm.isDrawFilledOutline()
boolean	RoiToMaskAlgorithm.isDrawFilledOutline()
boolean	UnreferencedRoiToRGBAlgorithm.isDrawLabel()
boolean	ROIToLabelsByNameAlgorithm.isDrawOutline()
boolean	UnreferencedRoiToMaskAlgorithm.isDrawOutline()
boolean	ROIToLabelsExpressionAlgorithm.isDrawOutline()
boolean	RoiToMaskAlgorithm.isDrawOutline()
boolean	RoiToRGBAlgorithm.isDrawOver()
boolean	UnreferencedRoiToRGBAlgorithm.isDrawOver()
boolean	RoiToMaskAlgorithm.isDrawOver()
boolean	ROIToLabelsByNameAlgorithm.isFillOutline()
boolean	ROIToLabelsExpressionAlgorithm.isFillOutline()
boolean	RoiToRGBAlgorithm.isIgnoreC()
boolean	UnreferencedRoiToRGBAlgorithm.isIgnoreC()
boolean	ExtractImageInRoiAlgorithm.isIgnoreC()
boolean	RoiToRGBAlgorithm.isIgnoreT()
boolean	UnreferencedRoiToRGBAlgorithm.isIgnoreT()
boolean	ExtractImageInRoiAlgorithm.isIgnoreT()
boolean	RoiToRGBAlgorithm.isIgnoreZ()
boolean	UnreferencedRoiToRGBAlgorithm.isIgnoreZ()
boolean	ExtractImageInRoiAlgorithm.isIgnoreZ()
boolean	UnreferencedRoiToRGBAlgorithm.isPreferAssociatedImage()
boolean	UnreferencedRoiToMaskAlgorithm.isPreferAssociatedImage()
boolean	RoiToRGBAlgorithm.isPreferRenderViaOverlay()
void	ExtractImageInRoiAlgorithm.setAnnotationCLocation(OptionalTextAnnotationNameParameter annotationCLocation)
void	ExtractImageInRoiAlgorithm.setAnnotationTLocation(OptionalTextAnnotationNameParameter annotationTLocation)
void	ExtractImageInRoiAlgorithm.setAnnotationXLocation(OptionalTextAnnotationNameParameter annotationXLocation)
void	ExtractImageInRoiAlgorithm.setAnnotationYLocation(OptionalTextAnnotationNameParameter annotationYLocation)
void	ExtractImageInRoiAlgorithm.setAnnotationZLocation(OptionalTextAnnotationNameParameter annotationZLocation)
void	UnreferencedRoiToMaskAlgorithm.setDrawFilledOutline(boolean drawFilledOutline)
void	RoiToMaskAlgorithm.setDrawFilledOutline(boolean drawFilledOutline)
void	RoiToRGBAlgorithm.setDrawFilledOutlineMode(ROIElementDrawingMode drawFilledOutlineMode)
void	UnreferencedRoiToRGBAlgorithm.setDrawFilledOutlineMode(ROIElementDrawingMode drawFilledOutlineMode)
void	UnreferencedRoiToRGBAlgorithm.setDrawLabel(boolean drawLabel)
void	RoiToRGBAlgorithm.setDrawnLabel(RoiLabel drawnLabel)
void	ROIToLabelsByNameAlgorithm.setDrawOutline(boolean drawOutline)
void	UnreferencedRoiToMaskAlgorithm.setDrawOutline(boolean drawOutline)
void	ROIToLabelsExpressionAlgorithm.setDrawOutline(boolean drawOutline)
void	RoiToMaskAlgorithm.setDrawOutline(boolean drawOutline)
void	RoiToRGBAlgorithm.setDrawOutlineMode(ROIElementDrawingMode drawOutlineMode)
void	UnreferencedRoiToRGBAlgorithm.setDrawOutlineMode(ROIElementDrawingMode drawOutlineMode)
void	RoiToRGBAlgorithm.setDrawOver(boolean drawOver)
void	UnreferencedRoiToRGBAlgorithm.setDrawOver(boolean drawOver)
void	RoiToMaskAlgorithm.setDrawOver(boolean drawOver)
void	ROIToLabelsByNameAlgorithm.setFillOutline(boolean fillOutline)
void	ROIToLabelsExpressionAlgorithm.setFillOutline(boolean fillOutline)
void	RoiToRGBAlgorithm.setIgnoreC(boolean ignoreC)
void	UnreferencedRoiToRGBAlgorithm.setIgnoreC(boolean ignoreC)
void	ExtractImageInRoiAlgorithm.setIgnoreC(boolean ignoreC)
void	RoiToRGBAlgorithm.setIgnoreT(boolean ignoreT)
void	UnreferencedRoiToRGBAlgorithm.setIgnoreT(boolean ignoreT)
void	ExtractImageInRoiAlgorithm.setIgnoreT(boolean ignoreT)
void	RoiToRGBAlgorithm.setIgnoreZ(boolean ignoreZ)
void	UnreferencedRoiToRGBAlgorithm.setIgnoreZ(boolean ignoreZ)
void	ExtractImageInRoiAlgorithm.setIgnoreZ(boolean ignoreZ)
void	UnreferencedRoiToRGBAlgorithm.setImageArea(Margin imageArea)
void	UnreferencedRoiToMaskAlgorithm.setImageArea(Margin imageArea)
void	ROIToLabelsByNameAlgorithm.ROINameToLabelEntry.setLabel(int label)
void	ROIToLabelsByNameAlgorithm.setLabelAssignment(ParameterCollectionList labelAssignment)
void	RoiToRGBAlgorithm.setLabelBackground(OptionalColorParameter labelBackground)
void	RoiToRGBAlgorithm.setLabelFontFamily(FontFamilyParameter labelFontFamily)
void	RoiToRGBAlgorithm.setLabelForeground(Color labelForeground)
boolean	RoiToRGBAlgorithm.setLabelSize(int labelSize)
void	UnreferencedRoiToMaskAlgorithm.setLineThickness(int lineThickness)
void	RoiToMaskAlgorithm.setLineThickness(int lineThickness)
void	RoiToRGBAlgorithm.setMagnification(double magnification)
void	ROIToLabelsByNameAlgorithm.ROINameToLabelEntry.setName(String name)
boolean	RoiToRGBAlgorithm.setOpacity(double opacity)
void	RoiToRGBAlgorithm.setOverrideFillColor(OptionalColorParameter overrideFillColor)
void	UnreferencedRoiToRGBAlgorithm.setOverrideFillColor(OptionalColorParameter overrideFillColor)
void	RoiToRGBAlgorithm.setOverrideLineColor(OptionalColorParameter overrideLineColor)
void	UnreferencedRoiToRGBAlgorithm.setOverrideLineColor(OptionalColorParameter overrideLineColor)
void	RoiToRGBAlgorithm.setOverrideLineWidth(OptionalDoubleParameter overrideLineWidth)
void	UnreferencedRoiToRGBAlgorithm.setOverrideLineWidth(OptionalDoubleParameter overrideLineWidth)
void	UnreferencedRoiToRGBAlgorithm.setPreferAssociatedImage(boolean preferAssociatedImage)
void	UnreferencedRoiToMaskAlgorithm.setPreferAssociatedImage(boolean preferAssociatedImage)
void	RoiToRGBAlgorithm.setPreferRenderViaOverlay(boolean preferRenderViaOverlay)
void	ROIToLabelsExpressionAlgorithm.setRoiToLabelTransformation(OptionalJIPipeExpressionParameter roiToLabelTransformation)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.draw

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.draw with annotations of type JIPipeParameter

Modifier and Type	Method and Description
double	DrawTextRoiAlgorithm.getAngle()
int	DrawRectangleRoiAlgorithm.getArcHeight() Deprecated.
JIPipeExpressionParameter	DrawLineOvalRectangleRoiAlgorithm.Entry.getArcHeight()
int	DrawRectangleRoiAlgorithm.getArcWidth() Deprecated.
JIPipeExpressionParameter	DrawLineOvalRectangleRoiAlgorithm.Entry.getArcWidth()
OptionalColorParameter	DrawTextRoiAlgorithm.getBackgroundColor()
OptionalColorParameter	DrawScaleBarRoiAlgorithm.getBackgroundColor()
InnerMargin	DrawTextRoiAlgorithm.getBackgroundMargin()
Color	DrawScaleBarRoiAlgorithm.getBarColor()
int	DrawScaleBarRoiAlgorithm.getBarThickness()
ParameterCollectionList	DrawLineOvalRectangleRoiAlgorithm.getEntries()
OptionalColorParameter	VisualROIProperties.getFillColor()
OptionalColorParameter	VisualLocationROIProperties.getFillColor()
FontFamilyParameter	DrawTextRoiAlgorithm.getFontFamily()
FontFamilyParameter	DrawScaleBarRoiAlgorithm.TextSettings.getFontFamily()
int	DrawTextRoiAlgorithm.getFontSize()
int	DrawScaleBarRoiAlgorithm.TextSettings.getFontSize()
FontStyleParameter	DrawTextRoiAlgorithm.getFontStyle()
FontStyleParameter	DrawScaleBarRoiAlgorithm.TextSettings.getFontStyle()
OptionalQuantity	DrawScaleBarRoiAlgorithm.getHorizontalBarSize()
JIPipeExpressionParameter	DrawScaleBarRoiAlgorithm.TextSettings.getHorizontalLabel()
OptionalColorParameter	VisualROIProperties.getLineColor()
OptionalColorParameter	VisualLocationROIProperties.getLineColor()
double	VisualROIProperties.getLineWidth()
double	VisualLocationROIProperties.getLineWidth()
FixedMargin	DrawTextRoiAlgorithm.getLocation()
ScaleBarGenerator.ScaleBarPosition	DrawScaleBarRoiAlgorithm.getLocation()
int	VisualLocationROIProperties.getPositionC()
int	VisualLocationROIProperties.getPositionT()
int	VisualLocationROIProperties.getPositionZ()
Margin.List	DrawRectangleRoiAlgorithm.getRectangles() Deprecated.
Margin.List	DrawOvalRoiAlgorithm.getRectangles() Deprecated.
OptionalJIPipeExpressionParameter	VisualROIProperties.getRoiName()
JIPipeExpressionParameter	VisualLocationROIProperties.getRoiName()
VisualLocationROIProperties	DrawTextRoiAlgorithm.getRoiProperties()
VisualLocationROIProperties	DrawRectangleRoiAlgorithm.getRoiProperties() Deprecated.
VisualLocationROIProperties	DrawOvalRoiAlgorithm.getRoiProperties() Deprecated.
VisualLocationROIProperties	DrawLineOvalRectangleRoiAlgorithm.getRoiProperties()
JIPipeExpressionParameter	DrawTextRoiAlgorithm.getText()
Color	DrawScaleBarRoiAlgorithm.TextSettings.getTextColor()
DrawScaleBarRoiAlgorithm.TextSettings	DrawScaleBarRoiAlgorithm.getTextSettings()
DrawLineOvalRectangleRoiAlgorithm.RoiType	DrawLineOvalRectangleRoiAlgorithm.Entry.getType()
OptionalQuantity	DrawScaleBarRoiAlgorithm.getVerticalBarSize()
JIPipeExpressionParameter	DrawScaleBarRoiAlgorithm.TextSettings.getVerticalLabel()
JIPipeExpressionParameter	DrawLineOvalRectangleRoiAlgorithm.Entry.getX1()
JIPipeExpressionParameter	DrawLineOvalRectangleRoiAlgorithm.Entry.getX2()
JIPipeExpressionParameter	DrawLineOvalRectangleRoiAlgorithm.Entry.getY1()
JIPipeExpressionParameter	DrawLineOvalRectangleRoiAlgorithm.Entry.getY2()
boolean	DrawTextRoiAlgorithm.isAntialiased()
boolean	DrawTextRoiAlgorithm.isCenter()
boolean	DrawRectangleRoiAlgorithm.isCenter() Deprecated.
boolean	DrawOvalRoiAlgorithm.isCenter() Deprecated.
boolean	DrawScaleBarRoiAlgorithm.isDrawHorizontal()
boolean	DrawScaleBarRoiAlgorithm.isDrawVertical()
boolean	DrawScaleBarRoiAlgorithm.TextSettings.isHideLabels()
void	DrawTextRoiAlgorithm.setAngle(double angle)
void	DrawTextRoiAlgorithm.setAntialiased(boolean antialiased)
void	DrawRectangleRoiAlgorithm.setArcHeight(int arcHeight) Deprecated.
void	DrawLineOvalRectangleRoiAlgorithm.Entry.setArcHeight(JIPipeExpressionParameter arcHeight)
void	DrawRectangleRoiAlgorithm.setArcWidth(int arcWidth) Deprecated.
void	DrawLineOvalRectangleRoiAlgorithm.Entry.setArcWidth(JIPipeExpressionParameter arcWidth)
void	DrawTextRoiAlgorithm.setBackgroundColor(OptionalColorParameter backgroundColor)
void	DrawScaleBarRoiAlgorithm.setBackgroundColor(OptionalColorParameter backgroundColor)
void	DrawTextRoiAlgorithm.setBackgroundMargin(InnerMargin backgroundMargin)
void	DrawScaleBarRoiAlgorithm.setBarColor(Color barColor)
void	DrawScaleBarRoiAlgorithm.setBarThickness(int barThickness)
void	DrawTextRoiAlgorithm.setCenter(boolean center)
void	DrawRectangleRoiAlgorithm.setCenter(boolean center) Deprecated.
void	DrawOvalRoiAlgorithm.setCenter(boolean center) Deprecated.
void	DrawScaleBarRoiAlgorithm.setDrawHorizontal(boolean drawHorizontal)
void	DrawScaleBarRoiAlgorithm.setDrawVertical(boolean drawVertical)
void	DrawLineOvalRectangleRoiAlgorithm.setEntries(ParameterCollectionList entries)
void	VisualROIProperties.setFillColor(OptionalColorParameter fillColor)
void	VisualLocationROIProperties.setFillColor(OptionalColorParameter fillColor)
void	DrawTextRoiAlgorithm.setFontFamily(FontFamilyParameter fontFamily)
void	DrawScaleBarRoiAlgorithm.TextSettings.setFontFamily(FontFamilyParameter fontFamily)
void	DrawTextRoiAlgorithm.setFontSize(int fontSize)
void	DrawScaleBarRoiAlgorithm.TextSettings.setFontSize(int fontSize)
void	DrawTextRoiAlgorithm.setFontStyle(FontStyleParameter fontStyle)
void	DrawScaleBarRoiAlgorithm.TextSettings.setFontStyle(FontStyleParameter fontStyle)
void	DrawScaleBarRoiAlgorithm.TextSettings.setHideLabels(boolean hideLabels)
void	DrawScaleBarRoiAlgorithm.setHorizontalBarSize(OptionalQuantity horizontalBarSize)
void	DrawScaleBarRoiAlgorithm.TextSettings.setHorizontalLabel(JIPipeExpressionParameter horizontalLabel)
void	VisualROIProperties.setLineColor(OptionalColorParameter lineColor)
void	VisualLocationROIProperties.setLineColor(OptionalColorParameter lineColor)
void	VisualROIProperties.setLineWidth(double lineWidth)
void	VisualLocationROIProperties.setLineWidth(double lineWidth)
void	DrawTextRoiAlgorithm.setLocation(FixedMargin location)
void	DrawScaleBarRoiAlgorithm.setLocation(ScaleBarGenerator.ScaleBarPosition location)
void	VisualLocationROIProperties.setPositionC(int positionC)
void	VisualLocationROIProperties.setPositionT(int positionT)
void	VisualLocationROIProperties.setPositionZ(int positionZ)
void	DrawRectangleRoiAlgorithm.setRectangles(Margin.List rectangles) Deprecated.
void	DrawOvalRoiAlgorithm.setRectangles(Margin.List rectangles) Deprecated.
void	VisualLocationROIProperties.setRoiName(JIPipeExpressionParameter roiName)
void	VisualROIProperties.setRoiName(OptionalJIPipeExpressionParameter roiName)
void	DrawTextRoiAlgorithm.setText(JIPipeExpressionParameter text)
void	DrawScaleBarRoiAlgorithm.TextSettings.setTextColor(Color textColor)
void	DrawLineOvalRectangleRoiAlgorithm.Entry.setType(DrawLineOvalRectangleRoiAlgorithm.RoiType type)
void	DrawScaleBarRoiAlgorithm.setVerticalBarSize(OptionalQuantity verticalBarSize)
void	DrawScaleBarRoiAlgorithm.TextSettings.setVerticalLabel(JIPipeExpressionParameter verticalLabel)
void	DrawLineOvalRectangleRoiAlgorithm.Entry.setX1(JIPipeExpressionParameter x1)
void	DrawLineOvalRectangleRoiAlgorithm.Entry.setX2(JIPipeExpressionParameter x2)
void	DrawLineOvalRectangleRoiAlgorithm.Entry.setY1(JIPipeExpressionParameter y1)
void	DrawLineOvalRectangleRoiAlgorithm.Entry.setY2(JIPipeExpressionParameter y2)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.filter

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.filter with annotations of type JIPipeParameter

Modifier and Type	Method and Description
Margin	RemoveBorderRoisAlgorithm.getBorderDefinition()
PythonScript	FilterRoiByStatisticsScriptAlgorithm.getCode()
JIPipeExpressionParameter	FilterROIListsAlgorithm.getFilter()
JIPipeExpressionParameter	FilterRoiByNameAlgorithm.getFilters()
JIPipeExpressionParameter	FilterRoiByStatisticsAlgorithm.getFilters()
ImageStatisticsSetParameter	FilterRoiByStatisticsAlgorithm.getMeasurements()
RoiOutline	RemoveBorderRoisAlgorithm.getOutline()
OptionalJIPipeExpressionParameter	FilterROIByOverlapAlgorithm.ROIFilterSettings.getOverlapFilter()
ImageStatisticsSetParameter	FilterROIByOverlapAlgorithm.getOverlapFilterMeasurements()
FilterROIByOverlapAlgorithm.ROIFilterSettings	FilterROIByOverlapAlgorithm.getRoi1Settings()
FilterROIByOverlapAlgorithm.ROIFilterSettings	FilterROIByOverlapAlgorithm.getRoi2Settings()
JIPipeDynamicParameterCollection	FilterRoiByStatisticsScriptAlgorithm.getScriptParameters()
IntegerRange	SliceROIListAlgorithm.getSelectedIndices()
boolean	SliceROIListAlgorithm.isAutoClamp()
boolean	FilterROIByOverlapAlgorithm.ROIFilterSettings.isConsumeOnOverlap()
boolean	FilterROIByOverlapAlgorithm.ROIFilterSettings.isEnabled()
boolean	FilterROIByOverlapAlgorithm.ROIFilterSettings.isEnforceOverlap()
boolean	FilterROIByOverlapAlgorithm.ROIFilterSettings.isFastMode()
boolean	FilterROIByOverlapAlgorithm.ROIFilterSettings.isIgnoreC()
boolean	FilterROIByOverlapAlgorithm.ROIFilterSettings.isIgnoreT()
boolean	FilterROIByOverlapAlgorithm.ROIFilterSettings.isInvert()
boolean	FilterRoiByStatisticsAlgorithm.isMeasureInPhysicalUnits()
boolean	FilterROIByOverlapAlgorithm.ROIFilterSettings.isMeasureInPhysicalUnits()
boolean	FilterRoiByNameAlgorithm.isOutputEmptyLists()
boolean	FilterRoiByStatisticsAlgorithm.isOutputEmptyLists()
boolean	FilterROIListsAlgorithm.isOutputEmptyLists()
boolean	FilterROIByOverlapAlgorithm.ROIFilterSettings.isOutputOverlaps()
void	SliceROIListAlgorithm.setAutoClamp(boolean autoClamp)
void	RemoveBorderRoisAlgorithm.setBorderDefinition(Margin borderDefinition)
void	FilterRoiByStatisticsScriptAlgorithm.setCode(PythonScript code)
void	FilterROIByOverlapAlgorithm.ROIFilterSettings.setConsumeOnOverlap(boolean consumeOnOverlap)
void	FilterROIByOverlapAlgorithm.ROIFilterSettings.setEnabled(boolean enabled)
void	FilterROIByOverlapAlgorithm.ROIFilterSettings.setEnforceOverlap(boolean enforceOverlap)
void	FilterROIByOverlapAlgorithm.ROIFilterSettings.setFastMode(boolean fastMode)
void	FilterROIListsAlgorithm.setFilter(JIPipeExpressionParameter filter)
void	FilterRoiByNameAlgorithm.setFilters(JIPipeExpressionParameter filters)
void	FilterRoiByStatisticsAlgorithm.setFilters(JIPipeExpressionParameter filters)
void	FilterROIByOverlapAlgorithm.ROIFilterSettings.setIgnoreC(boolean ignoreC)
void	FilterROIByOverlapAlgorithm.ROIFilterSettings.setIgnoreT(boolean ignoreT)
void	FilterROIByOverlapAlgorithm.ROIFilterSettings.setInvert(boolean invert)
void	FilterRoiByStatisticsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	FilterROIByOverlapAlgorithm.ROIFilterSettings.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	FilterRoiByStatisticsAlgorithm.setMeasurements(ImageStatisticsSetParameter measurements)
void	RemoveBorderRoisAlgorithm.setOutline(RoiOutline outline)
void	FilterRoiByNameAlgorithm.setOutputEmptyLists(boolean outputEmptyLists)
void	FilterRoiByStatisticsAlgorithm.setOutputEmptyLists(boolean outputEmptyLists)
void	FilterROIListsAlgorithm.setOutputEmptyLists(boolean outputEmptyLists)
void	FilterROIByOverlapAlgorithm.ROIFilterSettings.setOutputOverlaps(boolean outputOverlaps)
void	FilterROIByOverlapAlgorithm.ROIFilterSettings.setOverlapFilter(OptionalJIPipeExpressionParameter overlapFilter)
void	FilterROIByOverlapAlgorithm.setOverlapFilterMeasurements(ImageStatisticsSetParameter overlapFilterMeasurements)
void	SliceROIListAlgorithm.setSelectedIndices(IntegerRange selectedIndices)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.generate

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.generate with annotations of type JIPipeParameter

Modifier and Type	Method and Description
TableToRectangularROIAlgorithm.Anchor	TableToRectangularROIAlgorithm.getAnchor()
double	TableToTextROIAlgorithm.getAngle()
OptionalColorParameter	TableToTextROIAlgorithm.getBackgroundColor()
InnerMargin	TableToTextROIAlgorithm.getBackgroundMargin()
TableColumnSourceExpressionParameter	TableToRectangularROIAlgorithm.getColumnC()
TableColumnSourceExpressionParameter	TableToCircularROIAlgorithm.getColumnC()
TableColumnSourceExpressionParameter	TableToPointROIAlgorithm.getColumnC()
TableColumnSourceExpressionParameter	TableToTextROIAlgorithm.getColumnC()
TableColumnSourceExpressionParameter	TableToLineROIAlgorithm.getColumnC()
TableColumnSourceExpressionParameter	TableToRectangularROIAlgorithm.getColumnHeight()
TableColumnSourceExpressionParameter	TableToRectangularROIAlgorithm.getColumnMetadata()
TableColumnSourceExpressionParameter	TableToCircularROIAlgorithm.getColumnMetadata()
TableColumnSourceExpressionParameter	TableToPointROIAlgorithm.getColumnMetadata()
TableColumnSourceExpressionParameter	TableToTextROIAlgorithm.getColumnMetadata()
TableColumnSourceExpressionParameter	TableToLineROIAlgorithm.getColumnMetadata()
TableColumnSourceExpressionParameter	TableToRectangularROIAlgorithm.getColumnName()
TableColumnSourceExpressionParameter	TableToCircularROIAlgorithm.getColumnName()
TableColumnSourceExpressionParameter	TableToPointROIAlgorithm.getColumnName()
TableColumnSourceExpressionParameter	TableToTextROIAlgorithm.getColumnName()
TableColumnSourceExpressionParameter	TableToLineROIAlgorithm.getColumnName()
TableColumnSourceExpressionParameter	TableToCircularROIAlgorithm.getColumnRadius()
TableColumnSourceExpressionParameter	TableToRectangularROIAlgorithm.getColumnT()
TableColumnSourceExpressionParameter	TableToCircularROIAlgorithm.getColumnT()
TableColumnSourceExpressionParameter	TableToPointROIAlgorithm.getColumnT()
TableColumnSourceExpressionParameter	TableToTextROIAlgorithm.getColumnT()
TableColumnSourceExpressionParameter	TableToLineROIAlgorithm.getColumnT()
TableColumnSourceExpressionParameter	TableToTextROIAlgorithm.getColumnText()
TableColumnSourceExpressionParameter	TableToRectangularROIAlgorithm.getColumnWidth()
TableColumnSourceExpressionParameter	TableToTextROIAlgorithm.getColumnX()
TableColumnSourceExpressionParameter	TableToRectangularROIAlgorithm.getColumnX1()
TableColumnSourceExpressionParameter	TableToCircularROIAlgorithm.getColumnX1()
TableColumnSourceExpressionParameter	TableToPointROIAlgorithm.getColumnX1()
TableColumnSourceExpressionParameter	TableToLineROIAlgorithm.getColumnX1()
TableColumnSourceExpressionParameter	TableToRectangularROIAlgorithm.getColumnX2()
TableColumnSourceExpressionParameter	TableToLineROIAlgorithm.getColumnX2()
TableColumnSourceExpressionParameter	TableToTextROIAlgorithm.getColumnY()
TableColumnSourceExpressionParameter	TableToRectangularROIAlgorithm.getColumnY1()
TableColumnSourceExpressionParameter	TableToCircularROIAlgorithm.getColumnY1()
TableColumnSourceExpressionParameter	TableToPointROIAlgorithm.getColumnY1()
TableColumnSourceExpressionParameter	TableToLineROIAlgorithm.getColumnY1()
TableColumnSourceExpressionParameter	TableToRectangularROIAlgorithm.getColumnY2()
TableColumnSourceExpressionParameter	TableToLineROIAlgorithm.getColumnY2()
TableColumnSourceExpressionParameter	TableToRectangularROIAlgorithm.getColumnZ()
TableColumnSourceExpressionParameter	TableToCircularROIAlgorithm.getColumnZ()
TableColumnSourceExpressionParameter	TableToPointROIAlgorithm.getColumnZ()
TableColumnSourceExpressionParameter	TableToTextROIAlgorithm.getColumnZ()
TableColumnSourceExpressionParameter	TableToLineROIAlgorithm.getColumnZ()
FontFamilyParameter	TableToTextROIAlgorithm.getFontFamily()
int	TableToTextROIAlgorithm.getFontSize()
FontStyleParameter	TableToTextROIAlgorithm.getFontStyle()
TableToRectangularROIAlgorithm.Mode	TableToRectangularROIAlgorithm.getMode()
Margin.List	ReferencedDefineRectangularRoiAlgorithm.getRectangles() Deprecated.
Margin.List	AppendRectangularRoiAlgorithm.getRectangles() Deprecated.
RectangleList	DefineRectangularRoiAlgorithm.getRectangles() Deprecated.
Margin.List	ReferencedAppendRectangularRoiAlgorithm.getRectangles() Deprecated.
VisualROIProperties	TableToRectangularROIAlgorithm.getRoiProperties()
VisualROIProperties	TableToCircularROIAlgorithm.getRoiProperties()
VisualROIProperties	TableToPointROIAlgorithm.getRoiProperties()
VisualROIProperties	TableToTextROIAlgorithm.getRoiProperties()
VisualROIProperties	TableToLineROIAlgorithm.getRoiProperties()
int	MaskToRoiAlgorithm.getThreshold()
boolean	TableToTextROIAlgorithm.isAntialiased()
boolean	TableToTextROIAlgorithm.isCenterX()
boolean	TableToTextROIAlgorithm.isCenterY()
boolean	MaskToRoiAlgorithm.isInvertThreshold()
boolean	TableToRectangularROIAlgorithm.isOneBasedPositions()
boolean	TableToCircularROIAlgorithm.isOneBasedPositions()
boolean	TableToPointROIAlgorithm.isOneBasedPositions()
boolean	TableToTextROIAlgorithm.isOneBasedPositions()
boolean	TableToLineROIAlgorithm.isOneBasedPositions()
boolean	ReferencedDefineRectangularRoiAlgorithm.isSplit() Deprecated.
boolean	DefineRectangularRoiAlgorithm.isSplit() Deprecated.
void	TableToRectangularROIAlgorithm.setAnchor(TableToRectangularROIAlgorithm.Anchor anchor)
void	TableToTextROIAlgorithm.setAngle(double angle)
void	TableToTextROIAlgorithm.setAntialiased(boolean antialiased)
void	TableToTextROIAlgorithm.setBackgroundColor(OptionalColorParameter backgroundColor)
void	TableToTextROIAlgorithm.setBackgroundMargin(InnerMargin backgroundMargin)
void	TableToTextROIAlgorithm.setCenterX(boolean centerX)
void	TableToTextROIAlgorithm.setCenterY(boolean centerY)
void	TableToRectangularROIAlgorithm.setColumnC(TableColumnSourceExpressionParameter columnC)
void	TableToCircularROIAlgorithm.setColumnC(TableColumnSourceExpressionParameter columnC)
void	TableToPointROIAlgorithm.setColumnC(TableColumnSourceExpressionParameter columnC)
void	TableToTextROIAlgorithm.setColumnC(TableColumnSourceExpressionParameter columnC)
void	TableToLineROIAlgorithm.setColumnC(TableColumnSourceExpressionParameter columnC)
void	TableToRectangularROIAlgorithm.setColumnHeight(TableColumnSourceExpressionParameter columnHeight)
void	TableToRectangularROIAlgorithm.setColumnMetadata(TableColumnSourceExpressionParameter columnMetadata)
void	TableToCircularROIAlgorithm.setColumnMetadata(TableColumnSourceExpressionParameter columnMetadata)
void	TableToPointROIAlgorithm.setColumnMetadata(TableColumnSourceExpressionParameter columnMetadata)
void	TableToTextROIAlgorithm.setColumnMetadata(TableColumnSourceExpressionParameter columnMetadata)
void	TableToLineROIAlgorithm.setColumnMetadata(TableColumnSourceExpressionParameter columnMetadata)
void	TableToRectangularROIAlgorithm.setColumnName(TableColumnSourceExpressionParameter columnName)
void	TableToCircularROIAlgorithm.setColumnName(TableColumnSourceExpressionParameter columnName)
void	TableToPointROIAlgorithm.setColumnName(TableColumnSourceExpressionParameter columnName)
void	TableToTextROIAlgorithm.setColumnName(TableColumnSourceExpressionParameter columnName)
void	TableToLineROIAlgorithm.setColumnName(TableColumnSourceExpressionParameter columnName)
void	TableToCircularROIAlgorithm.setColumnRadius(TableColumnSourceExpressionParameter columnRadius)
void	TableToRectangularROIAlgorithm.setColumnT(TableColumnSourceExpressionParameter columnT)
void	TableToCircularROIAlgorithm.setColumnT(TableColumnSourceExpressionParameter columnT)
void	TableToPointROIAlgorithm.setColumnT(TableColumnSourceExpressionParameter columnT)
void	TableToTextROIAlgorithm.setColumnT(TableColumnSourceExpressionParameter columnT)
void	TableToLineROIAlgorithm.setColumnT(TableColumnSourceExpressionParameter columnT)
void	TableToTextROIAlgorithm.setColumnText(TableColumnSourceExpressionParameter columnText)
void	TableToRectangularROIAlgorithm.setColumnWidth(TableColumnSourceExpressionParameter columnWidth)
void	TableToTextROIAlgorithm.setColumnX(TableColumnSourceExpressionParameter columnX)
void	TableToRectangularROIAlgorithm.setColumnX1(TableColumnSourceExpressionParameter columnX1)
void	TableToCircularROIAlgorithm.setColumnX1(TableColumnSourceExpressionParameter columnX1)
void	TableToPointROIAlgorithm.setColumnX1(TableColumnSourceExpressionParameter columnX1)
void	TableToLineROIAlgorithm.setColumnX1(TableColumnSourceExpressionParameter columnX1)
void	TableToRectangularROIAlgorithm.setColumnX2(TableColumnSourceExpressionParameter columnX2)
void	TableToLineROIAlgorithm.setColumnX2(TableColumnSourceExpressionParameter columnX2)
void	TableToTextROIAlgorithm.setColumnY(TableColumnSourceExpressionParameter columnY)
void	TableToRectangularROIAlgorithm.setColumnY1(TableColumnSourceExpressionParameter columnY1)
void	TableToCircularROIAlgorithm.setColumnY1(TableColumnSourceExpressionParameter columnY1)
void	TableToPointROIAlgorithm.setColumnY1(TableColumnSourceExpressionParameter columnY1)
void	TableToLineROIAlgorithm.setColumnY1(TableColumnSourceExpressionParameter columnY1)
void	TableToRectangularROIAlgorithm.setColumnY2(TableColumnSourceExpressionParameter columnY2)
void	TableToLineROIAlgorithm.setColumnY2(TableColumnSourceExpressionParameter columnY2)
void	TableToRectangularROIAlgorithm.setColumnZ(TableColumnSourceExpressionParameter columnZ)
void	TableToCircularROIAlgorithm.setColumnZ(TableColumnSourceExpressionParameter columnZ)
void	TableToPointROIAlgorithm.setColumnZ(TableColumnSourceExpressionParameter columnZ)
void	TableToTextROIAlgorithm.setColumnZ(TableColumnSourceExpressionParameter columnZ)
void	TableToLineROIAlgorithm.setColumnZ(TableColumnSourceExpressionParameter columnZ)
void	TableToTextROIAlgorithm.setFontFamily(FontFamilyParameter fontFamily)
void	TableToTextROIAlgorithm.setFontSize(int fontSize)
void	TableToTextROIAlgorithm.setFontStyle(FontStyleParameter fontStyle)
void	MaskToRoiAlgorithm.setInvertThreshold(boolean invertThreshold)
void	TableToRectangularROIAlgorithm.setMode(TableToRectangularROIAlgorithm.Mode mode)
void	TableToRectangularROIAlgorithm.setOneBasedPositions(boolean oneBasedPositions)
void	TableToCircularROIAlgorithm.setOneBasedPositions(boolean oneBasedPositions)
void	TableToPointROIAlgorithm.setOneBasedPositions(boolean oneBasedPositions)
void	TableToTextROIAlgorithm.setOneBasedPositions(boolean oneBasedPositions)
void	TableToLineROIAlgorithm.setOneBasedPositions(boolean oneBasedPositions)
void	ReferencedDefineRectangularRoiAlgorithm.setRectangles(Margin.List rectangles) Deprecated.
void	AppendRectangularRoiAlgorithm.setRectangles(Margin.List rectangles) Deprecated.
void	ReferencedAppendRectangularRoiAlgorithm.setRectangles(Margin.List rectangles) Deprecated.
void	DefineRectangularRoiAlgorithm.setRectangles(RectangleList rectangles) Deprecated.
void	ReferencedDefineRectangularRoiAlgorithm.setSplit(boolean split) Deprecated.
void	DefineRectangularRoiAlgorithm.setSplit(boolean split) Deprecated.
void	MaskToRoiAlgorithm.setThreshold(int threshold)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.measure

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.measure with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalStringParameter	RoiStatisticsAlgorithm.getIndexAnnotation()
ImageStatisticsSetParameter	RoiStatisticsAlgorithm.getMeasurements()
ROI2DRelationMeasurementSetParameter	ExtractRoi2DRelationStatisticsAlgorithm.getMeasurements()
ExtractROIProfileAlgorithm.RectangleMode	ExtractROIProfileAlgorithm.getRectangleMode()
OptionalDataAnnotationNameParameter	ExtractROIProfileAlgorithm.getRoiDataAnnotation()
OptionalTextAnnotationNameParameter	ExtractROIProfileAlgorithm.getRoiIndexAnnotation()
OptionalTextAnnotationNameParameter	ExtractROIProfileAlgorithm.getRoiNameAnnotation()
boolean	CountROIAlgorithm.isAddAnnotations()
boolean	RoiStatisticsAlgorithm.isAddNameToTable()
boolean	RoiStatisticsAlgorithm.isApplyPerChannel()
boolean	RoiStatisticsAlgorithm.isApplyPerFrame()
boolean	RoiStatisticsAlgorithm.isApplyPerSlice()
boolean	ExtractROIProfileAlgorithm.isMeasureInPhysicalUnits()
boolean	RoiStatisticsAlgorithm.isMeasureInPhysicalUnits()
boolean	ExtractRoi2DRelationStatisticsAlgorithm.isMeasureInPhysicalUnits()
boolean	ExtractRoi2DRelationStatisticsAlgorithm.isPreciseColocalization()
boolean	ExtractRoi2DRelationStatisticsAlgorithm.isRequireColocalization()
void	CountROIAlgorithm.setAddAnnotations(boolean addAnnotations)
void	RoiStatisticsAlgorithm.setAddNameToTable(boolean addNameToTable)
void	RoiStatisticsAlgorithm.setApplyPerChannel(boolean applyPerChannel)
void	RoiStatisticsAlgorithm.setApplyPerFrame(boolean applyPerFrame)
void	RoiStatisticsAlgorithm.setApplyPerSlice(boolean applyPerSlice)
void	RoiStatisticsAlgorithm.setIndexAnnotation(OptionalStringParameter indexAnnotation)
void	ExtractROIProfileAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	RoiStatisticsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	ExtractRoi2DRelationStatisticsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	RoiStatisticsAlgorithm.setMeasurements(ImageStatisticsSetParameter measurements)
void	ExtractRoi2DRelationStatisticsAlgorithm.setMeasurements(ROI2DRelationMeasurementSetParameter measurements)
void	ExtractRoi2DRelationStatisticsAlgorithm.setPreciseColocalization(boolean preciseColocalization)
void	ExtractROIProfileAlgorithm.setRectangleMode(ExtractROIProfileAlgorithm.RectangleMode rectangleMode)
void	ExtractRoi2DRelationStatisticsAlgorithm.setRequireColocalization(boolean requireColocalization)
void	ExtractROIProfileAlgorithm.setRoiDataAnnotation(OptionalDataAnnotationNameParameter roiDataAnnotation)
void	ExtractROIProfileAlgorithm.setRoiIndexAnnotation(OptionalTextAnnotationNameParameter roiIndexAnnotation)
void	ExtractROIProfileAlgorithm.setRoiNameAnnotation(OptionalTextAnnotationNameParameter roiNameAnnotation)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.merge

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.merge with annotations of type JIPipeParameter

Modifier and Type	Method and Description
PythonScript	FilterAndMergeRoiByStatisticsScriptAlgorithm.getCode()
JIPipeDynamicParameterCollection	FilterAndMergeRoiByStatisticsScriptAlgorithm.getScriptParameters()
void	FilterAndMergeRoiByStatisticsScriptAlgorithm.setCode(PythonScript code)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.modify

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.modify with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeExpressionParameter	RotateRoiAlgorithm.getAngle()
boolean	ScaleRoiAlgorithm.getCenterScale()
boolean	ChangeRoiPropertiesAlgorithm.getCenterScale()
OptionalTextAnnotationNameParameter	ChangeRoiPropertiesFromAnnotationsAlgorithm.getCenterScale()
OptionalJIPipeExpressionParameter	ChangeRoiPropertiesFromTableAlgorithm.getCenterScale()
OptionalJIPipeExpressionParameter	ChangeRoiPropertiesFromExpressionsAlgorithm.getCenterScale()
JIPipeExpressionParameter	RotateRoiAlgorithm.getCenterX()
JIPipeExpressionParameter	RotateRoiAlgorithm.getCenterY()
StringQueryExpression	ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm.getExpression()
OptionalColorParameter	ChangeRoiPropertiesAlgorithm.getFillColor()
OptionalTextAnnotationNameParameter	ChangeRoiPropertiesFromAnnotationsAlgorithm.getFillColor()
OptionalJIPipeExpressionParameter	ChangeRoiPropertiesFromTableAlgorithm.getFillColor()
OptionalJIPipeExpressionParameter	ChangeRoiPropertiesFromExpressionsAlgorithm.getFillColor()
MeasurementColumn	ColorRoiByStatisticsAlgorithm.getFillMeasurement()
int	OutlineRoiConcaveHullMoreiraSantosAlgorithm.getkMeansK()
OptionalColorParameter	ChangeRoiPropertiesAlgorithm.getLineColor()
OptionalTextAnnotationNameParameter	ChangeRoiPropertiesFromAnnotationsAlgorithm.getLineColor()
OptionalJIPipeExpressionParameter	ChangeRoiPropertiesFromTableAlgorithm.getLineColor()
OptionalJIPipeExpressionParameter	ChangeRoiPropertiesFromExpressionsAlgorithm.getLineColor()
MeasurementColumn	ColorRoiByStatisticsAlgorithm.getLineMeasurement()
OptionalDoubleParameter	ChangeRoiPropertiesAlgorithm.getLineWidth()
OptionalTextAnnotationNameParameter	ChangeRoiPropertiesFromAnnotationsAlgorithm.getLineWidth()
OptionalJIPipeExpressionParameter	ChangeRoiPropertiesFromTableAlgorithm.getLineWidth()
OptionalJIPipeExpressionParameter	ChangeRoiPropertiesFromExpressionsAlgorithm.getLineWidth()
OptionalColorMapParameter	ColorRoiByNameAlgorithm.getMapFillColor()
OptionalColorMapParameter	ColorRoiByStatisticsAlgorithm.getMapFillColor()
OptionalColorMapParameter	ColorRoiByNameAlgorithm.getMapLineColor()
OptionalColorMapParameter	ColorRoiByStatisticsAlgorithm.getMapLineColor()
ImageStatisticsSetParameter	ChangeRoiPropertiesFromExpressionsAlgorithm.getMeasurements()
ImageStatisticsSetParameter	ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm.getMeasurements()
ImageStatisticsSetParameter	EnlargeShrinkRoiAlgorithm.getMeasurements()
RoiFloodFillAlgorithm.Mode	RoiFloodFillAlgorithm.getMode()
LogicalOperation	RoiCalculatorAlgorithm.getOperation()
RoiOutline	OutlineRoiAlgorithm.getOutline()
JIPipeExpressionParameter	EnlargeShrinkRoiAlgorithm.getPixels()
OptionalIntegerParameter	ChangeRoiPropertiesAlgorithm.getPositionC()
OptionalTextAnnotationNameParameter	ChangeRoiPropertiesFromAnnotationsAlgorithm.getPositionC()
OptionalJIPipeExpressionParameter	ChangeRoiPropertiesFromTableAlgorithm.getPositionC()
OptionalJIPipeExpressionParameter	ChangeRoiPropertiesFromExpressionsAlgorithm.getPositionC()
OptionalIntegerParameter	ChangeRoiPropertiesAlgorithm.getPositionT()
OptionalTextAnnotationNameParameter	ChangeRoiPropertiesFromAnnotationsAlgorithm.getPositionT()
OptionalJIPipeExpressionParameter	ChangeRoiPropertiesFromTableAlgorithm.getPositionT()
OptionalJIPipeExpressionParameter	ChangeRoiPropertiesFromExpressionsAlgorithm.getPositionT()
OptionalDoubleParameter	ChangeRoiPropertiesAlgorithm.getPositionX()
OptionalTextAnnotationNameParameter	ChangeRoiPropertiesFromAnnotationsAlgorithm.getPositionX()
OptionalJIPipeExpressionParameter	ChangeRoiPropertiesFromTableAlgorithm.getPositionX()
OptionalJIPipeExpressionParameter	ChangeRoiPropertiesFromExpressionsAlgorithm.getPositionX()
OptionalDoubleParameter	ChangeRoiPropertiesAlgorithm.getPositionY()
OptionalTextAnnotationNameParameter	ChangeRoiPropertiesFromAnnotationsAlgorithm.getPositionY()
OptionalJIPipeExpressionParameter	ChangeRoiPropertiesFromTableAlgorithm.getPositionY()
OptionalJIPipeExpressionParameter	ChangeRoiPropertiesFromExpressionsAlgorithm.getPositionY()
OptionalIntegerParameter	ChangeRoiPropertiesAlgorithm.getPositionZ()
OptionalTextAnnotationNameParameter	ChangeRoiPropertiesFromAnnotationsAlgorithm.getPositionZ()
OptionalJIPipeExpressionParameter	ChangeRoiPropertiesFromTableAlgorithm.getPositionZ()
OptionalJIPipeExpressionParameter	ChangeRoiPropertiesFromExpressionsAlgorithm.getPositionZ()
OptionalStringParameter	ChangeRoiPropertiesAlgorithm.getRoiName()
OptionalTextAnnotationNameParameter	ChangeRoiPropertiesFromAnnotationsAlgorithm.getRoiName()
OptionalJIPipeExpressionParameter	ChangeRoiPropertiesFromTableAlgorithm.getRoiName()
OptionalJIPipeExpressionParameter	ChangeRoiPropertiesFromExpressionsAlgorithm.getRoiName()
JIPipeExpressionParameter	ChangeRoiPropertiesFromTableAlgorithm.getRowSelector()
double	ScaleRoiAlgorithm.getScaleX()
OptionalDoubleParameter	ChangeRoiPropertiesAlgorithm.getScaleX()
OptionalTextAnnotationNameParameter	ChangeRoiPropertiesFromAnnotationsAlgorithm.getScaleX()
OptionalJIPipeExpressionParameter	ChangeRoiPropertiesFromTableAlgorithm.getScaleX()
OptionalJIPipeExpressionParameter	ChangeRoiPropertiesFromExpressionsAlgorithm.getScaleX()
double	ScaleRoiAlgorithm.getScaleY()
OptionalDoubleParameter	ChangeRoiPropertiesAlgorithm.getScaleY()
OptionalTextAnnotationNameParameter	ChangeRoiPropertiesFromAnnotationsAlgorithm.getScaleY()
OptionalJIPipeExpressionParameter	ChangeRoiPropertiesFromTableAlgorithm.getScaleY()
OptionalJIPipeExpressionParameter	ChangeRoiPropertiesFromExpressionsAlgorithm.getScaleY()
HyperstackDimension	ReorderRoiDimensionsAlgorithm.getTargetC()
HyperstackDimension	ReorderRoiDimensionsAlgorithm.getTargetT()
HyperstackDimension	ReorderRoiDimensionsAlgorithm.getTargetZ()
double	RoiFloodFillAlgorithm.getTolerance()
boolean	RoiCalculatorAlgorithm.isApplyPerChannel()
boolean	RoiCalculatorAlgorithm.isApplyPerFrame()
boolean	RoiCalculatorAlgorithm.isApplyPerSlice()
boolean	CropRoiListAlgorithm.isCropC()
boolean	CropRoiListAlgorithm.isCropT()
boolean	CropRoiListAlgorithm.isCropXY()
boolean	CropRoiListAlgorithm.isCropZ()
boolean	FlattenRoiAlgorithm.isFlattenC()
boolean	FlattenRoiAlgorithm.isFlattenT()
boolean	FlattenRoiAlgorithm.isFlattenZ()
boolean	ChangeRoiPropertiesFromExpressionsAlgorithm.isMeasureInPhysicalUnits()
boolean	ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm.isMeasureInPhysicalUnits()
boolean	EnlargeShrinkRoiAlgorithm.isMeasureInPhysicalUnits()
boolean	OutlineRoiConcaveHullMoreiraSantosAlgorithm.isSkipInvalidInputs()
boolean	RoiFloodFillAlgorithm.isSmooth()
boolean	RoiCalculatorAlgorithm.isSplitAfterwards()
void	RotateRoiAlgorithm.setAngle(JIPipeExpressionParameter angle)
void	RoiCalculatorAlgorithm.setApplyPerChannel(boolean applyPerChannel)
void	RoiCalculatorAlgorithm.setApplyPerFrame(boolean applyPerFrame)
void	RoiCalculatorAlgorithm.setApplyPerSlice(boolean applyPerSlice)
void	ScaleRoiAlgorithm.setCenterScale(boolean centerScale)
void	ChangeRoiPropertiesAlgorithm.setCenterScale(boolean centerScale)
void	ChangeRoiPropertiesFromTableAlgorithm.setCenterScale(OptionalJIPipeExpressionParameter centerScale)
void	ChangeRoiPropertiesFromExpressionsAlgorithm.setCenterScale(OptionalJIPipeExpressionParameter centerScale)
void	ChangeRoiPropertiesFromAnnotationsAlgorithm.setCenterScale(OptionalTextAnnotationNameParameter centerScale)
void	RotateRoiAlgorithm.setCenterX(JIPipeExpressionParameter centerX)
void	RotateRoiAlgorithm.setCenterY(JIPipeExpressionParameter centerY)
void	CropRoiListAlgorithm.setCropC(boolean cropC)
void	CropRoiListAlgorithm.setCropT(boolean cropT)
void	CropRoiListAlgorithm.setCropXY(boolean cropXY)
void	CropRoiListAlgorithm.setCropZ(boolean cropZ)
void	ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm.setExpression(StringQueryExpression expression)
void	ChangeRoiPropertiesAlgorithm.setFillColor(OptionalColorParameter fillColor)
void	ChangeRoiPropertiesFromTableAlgorithm.setFillColor(OptionalJIPipeExpressionParameter fillColor)
void	ChangeRoiPropertiesFromExpressionsAlgorithm.setFillColor(OptionalJIPipeExpressionParameter fillColor)
void	ChangeRoiPropertiesFromAnnotationsAlgorithm.setFillColor(OptionalTextAnnotationNameParameter fillColor)
void	ColorRoiByStatisticsAlgorithm.setFillMeasurement(MeasurementColumn fillMeasurement)
void	FlattenRoiAlgorithm.setFlattenC(boolean flattenC)
void	FlattenRoiAlgorithm.setFlattenT(boolean flattenT)
void	FlattenRoiAlgorithm.setFlattenZ(boolean flattenZ)
void	OutlineRoiConcaveHullMoreiraSantosAlgorithm.setkMeansK(int kMeansK)
void	ChangeRoiPropertiesAlgorithm.setLineColor(OptionalColorParameter lineColor)
void	ChangeRoiPropertiesFromTableAlgorithm.setLineColor(OptionalJIPipeExpressionParameter lineColor)
void	ChangeRoiPropertiesFromExpressionsAlgorithm.setLineColor(OptionalJIPipeExpressionParameter lineColor)
void	ChangeRoiPropertiesFromAnnotationsAlgorithm.setLineColor(OptionalTextAnnotationNameParameter lineColor)
void	ColorRoiByStatisticsAlgorithm.setLineMeasurement(MeasurementColumn lineMeasurement)
void	ChangeRoiPropertiesAlgorithm.setLineWidth(OptionalDoubleParameter lineWidth)
void	ChangeRoiPropertiesFromTableAlgorithm.setLineWidth(OptionalJIPipeExpressionParameter lineWidth)
void	ChangeRoiPropertiesFromExpressionsAlgorithm.setLineWidth(OptionalJIPipeExpressionParameter lineWidth)
void	ChangeRoiPropertiesFromAnnotationsAlgorithm.setLineWidth(OptionalTextAnnotationNameParameter lineWidth)
void	ColorRoiByNameAlgorithm.setMapFillColor(OptionalColorMapParameter mapFillColor)
void	ColorRoiByStatisticsAlgorithm.setMapFillColor(OptionalColorMapParameter mapFillColor)
void	ColorRoiByNameAlgorithm.setMapLineColor(OptionalColorMapParameter mapLineColor)
void	ColorRoiByStatisticsAlgorithm.setMapLineColor(OptionalColorMapParameter mapLineColor)
void	ChangeRoiPropertiesFromExpressionsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	EnlargeShrinkRoiAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	ChangeRoiPropertiesFromExpressionsAlgorithm.setMeasurements(ImageStatisticsSetParameter measurements)
void	ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm.setMeasurements(ImageStatisticsSetParameter measurements)
void	EnlargeShrinkRoiAlgorithm.setMeasurements(ImageStatisticsSetParameter measurements)
void	RoiFloodFillAlgorithm.setMode(RoiFloodFillAlgorithm.Mode mode)
void	RoiCalculatorAlgorithm.setOperation(LogicalOperation operation)
void	OutlineRoiAlgorithm.setOutline(RoiOutline outline)
void	EnlargeShrinkRoiAlgorithm.setPixels(JIPipeExpressionParameter pixels)
void	ChangeRoiPropertiesAlgorithm.setPositionC(OptionalIntegerParameter positionC)
void	ChangeRoiPropertiesFromTableAlgorithm.setPositionC(OptionalJIPipeExpressionParameter positionC)
void	ChangeRoiPropertiesFromExpressionsAlgorithm.setPositionC(OptionalJIPipeExpressionParameter positionC)
void	ChangeRoiPropertiesFromAnnotationsAlgorithm.setPositionC(OptionalTextAnnotationNameParameter positionC)
void	ChangeRoiPropertiesAlgorithm.setPositionT(OptionalIntegerParameter positionT)
void	ChangeRoiPropertiesFromTableAlgorithm.setPositionT(OptionalJIPipeExpressionParameter positionT)
void	ChangeRoiPropertiesFromExpressionsAlgorithm.setPositionT(OptionalJIPipeExpressionParameter positionT)
void	ChangeRoiPropertiesFromAnnotationsAlgorithm.setPositionT(OptionalTextAnnotationNameParameter positionT)
void	ChangeRoiPropertiesAlgorithm.setPositionX(OptionalDoubleParameter positionX)
void	ChangeRoiPropertiesFromTableAlgorithm.setPositionX(OptionalJIPipeExpressionParameter positionX)
void	ChangeRoiPropertiesFromExpressionsAlgorithm.setPositionX(OptionalJIPipeExpressionParameter positionX)
void	ChangeRoiPropertiesFromAnnotationsAlgorithm.setPositionX(OptionalTextAnnotationNameParameter positionX)
void	ChangeRoiPropertiesAlgorithm.setPositionY(OptionalDoubleParameter positionY)
void	ChangeRoiPropertiesFromTableAlgorithm.setPositionY(OptionalJIPipeExpressionParameter positionY)
void	ChangeRoiPropertiesFromExpressionsAlgorithm.setPositionY(OptionalJIPipeExpressionParameter positionY)
void	ChangeRoiPropertiesFromAnnotationsAlgorithm.setPositionY(OptionalTextAnnotationNameParameter positionY)
void	ChangeRoiPropertiesAlgorithm.setPositionZ(OptionalIntegerParameter positionZ)
void	ChangeRoiPropertiesFromTableAlgorithm.setPositionZ(OptionalJIPipeExpressionParameter positionZ)
void	ChangeRoiPropertiesFromExpressionsAlgorithm.setPositionZ(OptionalJIPipeExpressionParameter positionZ)
void	ChangeRoiPropertiesFromAnnotationsAlgorithm.setPositionZ(OptionalTextAnnotationNameParameter positionZ)
void	ChangeRoiPropertiesFromTableAlgorithm.setRoiName(OptionalJIPipeExpressionParameter roiName)
void	ChangeRoiPropertiesFromExpressionsAlgorithm.setRoiName(OptionalJIPipeExpressionParameter roiName)
void	ChangeRoiPropertiesAlgorithm.setRoiName(OptionalStringParameter roiName)
void	ChangeRoiPropertiesFromAnnotationsAlgorithm.setRoiName(OptionalTextAnnotationNameParameter roiName)
void	ChangeRoiPropertiesFromTableAlgorithm.setRowSelector(JIPipeExpressionParameter rowSelector)
void	ScaleRoiAlgorithm.setScaleX(double scaleX)
void	ChangeRoiPropertiesAlgorithm.setScaleX(OptionalDoubleParameter scaleX)
void	ChangeRoiPropertiesFromTableAlgorithm.setScaleX(OptionalJIPipeExpressionParameter scaleX)
void	ChangeRoiPropertiesFromExpressionsAlgorithm.setScaleX(OptionalJIPipeExpressionParameter scaleX)
void	ChangeRoiPropertiesFromAnnotationsAlgorithm.setScaleX(OptionalTextAnnotationNameParameter scaleX)
void	ScaleRoiAlgorithm.setScaleY(double scaleY)
void	ChangeRoiPropertiesAlgorithm.setScaleY(OptionalDoubleParameter scaleY)
void	ChangeRoiPropertiesFromTableAlgorithm.setScaleY(OptionalJIPipeExpressionParameter scaleY)
void	ChangeRoiPropertiesFromExpressionsAlgorithm.setScaleY(OptionalJIPipeExpressionParameter scaleY)
void	ChangeRoiPropertiesFromAnnotationsAlgorithm.setScaleY(OptionalTextAnnotationNameParameter scaleY)
void	OutlineRoiConcaveHullMoreiraSantosAlgorithm.setSkipInvalidInputs(boolean skipInvalidInputs)
void	RoiFloodFillAlgorithm.setSmooth(boolean smooth)
void	RoiCalculatorAlgorithm.setSplitAfterwards(boolean splitAfterwards)
void	ReorderRoiDimensionsAlgorithm.setTargetC(HyperstackDimension targetC)
void	ReorderRoiDimensionsAlgorithm.setTargetT(HyperstackDimension targetT)
void	ReorderRoiDimensionsAlgorithm.setTargetZ(HyperstackDimension targetZ)
void	RoiFloodFillAlgorithm.setTolerance(double tolerance)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.properties

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.properties with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeExpressionParameter	RemoveROIMetadataAlgorithm.getFilterExpression()
OptionalStringParameter	ExtractROIMetadataAlgorithm.getIndexColumn()
String	SetRoiMetadataByStatisticsAlgorithm.MetadataProperty.getKey()
ImageStatisticsSetParameter	SetRoiMetadataByStatisticsAlgorithm.getMeasurements()
ParameterCollectionList	SetRoiMetadataByStatisticsAlgorithm.getMetadataGenerators()
OptionalStringParameter	ExtractROIMetadataAlgorithm.getNameColumn()
TableColumnSourceExpressionParameter	SetROIMetadataFromTableAlgorithm.getRoiIndexColumn()
JIPipeExpressionParameter	SetRoiMetadataByStatisticsAlgorithm.MetadataProperty.getValue()
boolean	SetRoiMetadataByStatisticsAlgorithm.isClearBeforeWrite()
boolean	SetROIMetadataFromTableAlgorithm.isClearBeforeWrite()
boolean	SetROIMetadataFromTableAlgorithm.isIgnoreMissingRoiIndices()
boolean	SetRoiMetadataByStatisticsAlgorithm.isMeasureInPhysicalUnits()
void	SetRoiMetadataByStatisticsAlgorithm.setClearBeforeWrite(boolean clearBeforeWrite)
void	SetROIMetadataFromTableAlgorithm.setClearBeforeWrite(boolean clearBeforeWrite)
void	RemoveROIMetadataAlgorithm.setFilterExpression(JIPipeExpressionParameter filterExpression)
void	SetROIMetadataFromTableAlgorithm.setIgnoreMissingRoiIndices(boolean ignoreMissingRoiIndices)
void	ExtractROIMetadataAlgorithm.setIndexColumn(OptionalStringParameter indexColumn)
void	SetRoiMetadataByStatisticsAlgorithm.MetadataProperty.setKey(String key)
void	SetRoiMetadataByStatisticsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	SetRoiMetadataByStatisticsAlgorithm.setMeasurements(ImageStatisticsSetParameter measurements)
void	SetRoiMetadataByStatisticsAlgorithm.setMetadataGenerators(ParameterCollectionList metadataGenerators)
void	ExtractROIMetadataAlgorithm.setNameColumn(OptionalStringParameter nameColumn)
void	SetROIMetadataFromTableAlgorithm.setRoiIndexColumn(TableColumnSourceExpressionParameter roiIndexColumn)
void	SetRoiMetadataByStatisticsAlgorithm.MetadataProperty.setValue(JIPipeExpressionParameter value)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.register

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.register with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeExpressionParameter	RegisterRoiToImageByBrightnessAlgorithm.getRotationRange()
JIPipeExpressionParameter	RegisterRoiToImageByBrightnessAlgorithm.getScaleRange()
int	RegisterRoiToImageByBrightnessAlgorithm.getXyStep()
void	RegisterRoiToImageByBrightnessAlgorithm.setRotationRange(JIPipeExpressionParameter rotationRange)
void	RegisterRoiToImageByBrightnessAlgorithm.setScaleRange(JIPipeExpressionParameter scaleRange)
void	RegisterRoiToImageByBrightnessAlgorithm.setXyStep(int xyStep)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.sort

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.sort with annotations of type JIPipeParameter

Modifier and Type	Method and Description
StringQueryExpression	SortRoiListByExpressionsAndMeasurementsAlgorithm.getExpression()
OptionalColorMapParameter	SortAndExtractRoiByStatisticsAlgorithm.getMapFillColor() Deprecated.
OptionalColorMapParameter	SortAndExtractRoiByStatisticsAlgorithm2.getMapFillColor()
OptionalColorMapParameter	SortAndExtractRoiByStatisticsAlgorithm.getMapLineColor() Deprecated.
OptionalColorMapParameter	SortAndExtractRoiByStatisticsAlgorithm2.getMapLineColor()
ImageStatisticsSetParameter	SortRoiListByExpressionsAndMeasurementsAlgorithm.getMeasurements()
OptionalIntegerRange	SortAndExtractRoiByStatisticsAlgorithm2.getSelectedIndices()
NumericFunctionExpression	SortAndExtractRoiByStatisticsAlgorithm.getSelection() Deprecated.
MeasurementColumnSortOrder.List	SortAndExtractRoiByStatisticsAlgorithm.getSortOrderList() Deprecated.
MeasurementColumnSortOrder.List	SortAndExtractRoiByStatisticsAlgorithm2.getSortOrderList()
boolean	SortAndExtractRoiByStatisticsAlgorithm.isAutoClamp() Deprecated.
boolean	SortAndExtractRoiByStatisticsAlgorithm2.isAutoClamp()
boolean	SortRoiListByExpressionsAndMeasurementsAlgorithm.isMeasureInPhysicalUnits()
boolean	SortRoiListByExpressionsAndMeasurementsAlgorithm.isReverseSortOrder()
void	SortAndExtractRoiByStatisticsAlgorithm.setAutoClamp(boolean autoClamp) Deprecated.
void	SortAndExtractRoiByStatisticsAlgorithm2.setAutoClamp(boolean autoClamp)
void	SortRoiListByExpressionsAndMeasurementsAlgorithm.setExpression(StringQueryExpression expression)
void	SortAndExtractRoiByStatisticsAlgorithm.setMapFillColor(OptionalColorMapParameter mapFillColor) Deprecated.
void	SortAndExtractRoiByStatisticsAlgorithm2.setMapFillColor(OptionalColorMapParameter mapFillColor)
void	SortAndExtractRoiByStatisticsAlgorithm.setMapLineColor(OptionalColorMapParameter mapLineColor) Deprecated.
void	SortAndExtractRoiByStatisticsAlgorithm2.setMapLineColor(OptionalColorMapParameter mapLineColor)
void	SortRoiListByExpressionsAndMeasurementsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	SortRoiListByExpressionsAndMeasurementsAlgorithm.setMeasurements(ImageStatisticsSetParameter measurements)
void	SortRoiListByExpressionsAndMeasurementsAlgorithm.setReverseSortOrder(boolean reverseSortOrder)
void	SortAndExtractRoiByStatisticsAlgorithm2.setSelectedIndices(OptionalIntegerRange selectedIndices)
void	SortAndExtractRoiByStatisticsAlgorithm.setSelection(NumericFunctionExpression selection) Deprecated.
void	SortAndExtractRoiByStatisticsAlgorithm.setSortOrderList(MeasurementColumnSortOrder.List sortOrderList) Deprecated.
void	SortAndExtractRoiByStatisticsAlgorithm2.setSortOrderList(MeasurementColumnSortOrder.List sortOrderList)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.split

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.split with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeExpressionParameter	ExplodeRoiAlgorithm.getAnnotationValue()
OptionalTextAnnotationNameParameter	SplitRoiConnectedComponentsAlgorithm.getComponentNameAnnotation()
SplitRoiConnectedComponentsAlgorithm.DimensionOperation	SplitRoiConnectedComponentsAlgorithm.getDimensionCOperation()
SplitRoiConnectedComponentsAlgorithm.DimensionOperation	SplitRoiConnectedComponentsAlgorithm.getDimensionTOperation()
SplitRoiConnectedComponentsAlgorithm.DimensionOperation	SplitRoiConnectedComponentsAlgorithm.getDimensionZOperation()
OptionalStringParameter	ExplodeRoiAlgorithm.getGeneratedAnnotation()
JIPipeExpressionParameter	SplitRoiConnectedComponentsAlgorithm.getGraphPostprocessing()
JIPipeExpressionParameter	SplitRoiConnectedComponentsAlgorithm.getOverlapFilter()
ImageStatisticsSetParameter	SplitRoiConnectedComponentsAlgorithm.getOverlapFilterMeasurements()
boolean	SplitRoiConnectedComponentsAlgorithm.isMeasureInPhysicalUnits()
boolean	SplitRoiConnectedComponentsAlgorithm.isSplitAtJunctions()
boolean	SplitRoiConnectedComponentsAlgorithm.isTrySolveJunctions()
void	ExplodeRoiAlgorithm.setAnnotationValue(JIPipeExpressionParameter annotationValue)
void	SplitRoiConnectedComponentsAlgorithm.setComponentNameAnnotation(OptionalTextAnnotationNameParameter componentNameAnnotation)
void	SplitRoiConnectedComponentsAlgorithm.setDimensionCOperation(SplitRoiConnectedComponentsAlgorithm.DimensionOperation dimensionCOperation)
void	SplitRoiConnectedComponentsAlgorithm.setDimensionTOperation(SplitRoiConnectedComponentsAlgorithm.DimensionOperation dimensionTOperation)
void	SplitRoiConnectedComponentsAlgorithm.setDimensionZOperation(SplitRoiConnectedComponentsAlgorithm.DimensionOperation dimensionZOperation)
void	ExplodeRoiAlgorithm.setGeneratedAnnotation(OptionalStringParameter generatedAnnotation)
void	SplitRoiConnectedComponentsAlgorithm.setGraphPostprocessing(JIPipeExpressionParameter graphPostprocessing)
void	SplitRoiConnectedComponentsAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	SplitRoiConnectedComponentsAlgorithm.setOverlapFilter(JIPipeExpressionParameter overlapFilter)
void	SplitRoiConnectedComponentsAlgorithm.setOverlapFilterMeasurements(ImageStatisticsSetParameter overlapFilterMeasurements)
void	SplitRoiConnectedComponentsAlgorithm.setSplitAtJunctions(boolean splitAtJunctions)
void	SplitRoiConnectedComponentsAlgorithm.setTrySolveJunctions(boolean trySolveJunctions)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.segment

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.segment with annotations of type JIPipeParameter

Modifier and Type	Method and Description
Neighborhood2D3D	SeededWatershedSegmentationAlgorithm.getConnectivity()
Neighborhood2D3D	ClassicWatershedSegmentationAlgorithm.getConnectivity()
double	RidgeDetector2DAlgorithm.getContrastHigh()
double	RidgeDetector2DAlgorithm.getContrastLow()
OptionalDoubleParameter	ClassicWatershedSegmentationAlgorithm.getCustomHMax()
OptionalDoubleParameter	ClassicWatershedSegmentationAlgorithm.getCustomHMin()
double	RidgeDetector2DAlgorithm.getLineWidth()
double	RidgeDetector2DAlgorithm.getLowerThreshold()
double	RidgeDetector2DAlgorithm.getMaxLength()
double	RidgeDetector2DAlgorithm.getMinLength()
de.biomedical_imaging.ij.steger.OverlapOption	RidgeDetector2DAlgorithm.getOverlapResolution()
double	RidgeDetector2DAlgorithm.getSigma()
ImageROITargetArea	SeededWatershedSegmentationAlgorithm.getTargetArea()
ImageROITargetArea	ClassicWatershedSegmentationAlgorithm.getTargetArea()
double	RidgeDetector2DAlgorithm.getUpperThreshold()
boolean	SeededWatershedSegmentationAlgorithm.isApplyPerSlice()
boolean	ClassicWatershedSegmentationAlgorithm.isApplyPerSlice()
boolean	RidgeDetector2DAlgorithm.isDarkLine()
boolean	RidgeDetector2DAlgorithm.isDoCorrectPosition()
boolean	RidgeDetector2DAlgorithm.isDoEstimateWidth()
boolean	RidgeDetector2DAlgorithm.isDoExtendLine()
boolean	RidgeDetector2DAlgorithm.isEstimateHighThreshold()
boolean	RidgeDetector2DAlgorithm.isEstimateLowThreshold()
boolean	RidgeDetector2DAlgorithm.isEstimateSigma()
boolean	SeededWatershedSegmentationAlgorithm.isGetDams()
void	SeededWatershedSegmentationAlgorithm.setApplyPerSlice(boolean applyPerSlice)
void	ClassicWatershedSegmentationAlgorithm.setApplyPerSlice(boolean applyPerSlice)
void	SeededWatershedSegmentationAlgorithm.setConnectivity(Neighborhood2D3D connectivity)
void	ClassicWatershedSegmentationAlgorithm.setConnectivity(Neighborhood2D3D connectivity)
void	RidgeDetector2DAlgorithm.setContrastHigh(double contrastHigh)
void	RidgeDetector2DAlgorithm.setContrastLow(double contrastLow)
void	ClassicWatershedSegmentationAlgorithm.setCustomHMax(OptionalDoubleParameter customHMax)
void	ClassicWatershedSegmentationAlgorithm.setCustomHMin(OptionalDoubleParameter customHMin)
void	RidgeDetector2DAlgorithm.setDarkLine(boolean darkLine)
void	RidgeDetector2DAlgorithm.setDoCorrectPosition(boolean doCorrectPosition)
void	RidgeDetector2DAlgorithm.setDoEstimateWidth(boolean doEstimateWidth)
void	RidgeDetector2DAlgorithm.setDoExtendLine(boolean doExtendLine)
void	RidgeDetector2DAlgorithm.setEstimateHighThreshold(boolean estimateHighThreshold)
void	RidgeDetector2DAlgorithm.setEstimateLowThreshold(boolean estimateLowThreshold)
void	RidgeDetector2DAlgorithm.setEstimateSigma(boolean estimateSigma)
void	SeededWatershedSegmentationAlgorithm.setGetDams(boolean getDams)
void	RidgeDetector2DAlgorithm.setLineWidth(double lineWidth)
void	RidgeDetector2DAlgorithm.setLowerThreshold(double lowerThreshold)
void	RidgeDetector2DAlgorithm.setMaxLength(double maxLength)
void	RidgeDetector2DAlgorithm.setMinLength(double minLength)
void	RidgeDetector2DAlgorithm.setOverlapResolution(de.biomedical_imaging.ij.steger.OverlapOption overlapResolution)
void	RidgeDetector2DAlgorithm.setSigma(double sigma)
void	SeededWatershedSegmentationAlgorithm.setTargetArea(ImageROITargetArea targetArea)
void	ClassicWatershedSegmentationAlgorithm.setTargetArea(ImageROITargetArea targetArea)
void	RidgeDetector2DAlgorithm.setUpperThreshold(double upperThreshold)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.statistics

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.statistics with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalStringParameter	KeyValueThresholdPartitionAveragesGenerator.getClass0CountColumnName()
OptionalStringParameter	KeyValueThresholdPartitionAveragesGenerator.getClass0MeanColumnName()
OptionalStringParameter	KeyValueThresholdPartitionAveragesGenerator.getClass0SumColumnName()
OptionalStringParameter	KeyValueThresholdPartitionAveragesGenerator.getClass1CountColumnName()
OptionalStringParameter	KeyValueThresholdPartitionAveragesGenerator.getClass1MeanColumnName()
OptionalStringParameter	KeyValueThresholdPartitionAveragesGenerator.getClass1SumColumnName()
OptionalStringParameter	KeyValueAveragesGenerator.getCountColumnName()
ParameterCollectionList	KeyValueThresholdPartitionGenerator.getGeneratedColumns()
JIPipeExpressionParameter	KeyValueHistogramGenerator.getIntegrationFunction()
TableColumnIntegrationParameter	FastKeyValueThresholdStatisticsGenerator.getIntegrationFunctionBackground()
JIPipeExpressionParameter	KeyValueThresholdStatisticsGenerator.getIntegrationFunctionBackground()
TableColumnIntegrationParameter	FastKeyValueThresholdStatisticsGenerator.getIntegrationFunctionForeground()
JIPipeExpressionParameter	KeyValueThresholdStatisticsGenerator.getIntegrationFunctionForeground()
OptionalStringParameter	KeyValueAveragesGenerator.getKeyColumnName()
OptionalStringParameter	KeyValueThresholdPartitionAveragesGenerator.getKeyColumnName()
OptionalStringParameter	KeyValueAveragesGenerator.getMeanColumnName()
HistogramGenerator.MultiChannelMode	HistogramGenerator.getMultiChannelMode()
String	KeyValueThresholdPartitionGenerator.GeneratedColumn.getName()
String	FastKeyValueThresholdStatisticsGenerator.getOutputBackgroundColumn()
String	KeyValueThresholdStatisticsGenerator.getOutputBackgroundColumn()
String	AverageKeyValueThresholdStatisticsGenerator.getOutputBackgroundColumn()
String	FastKeyValueThresholdStatisticsGenerator.getOutputForegroundColumn()
String	KeyValueThresholdStatisticsGenerator.getOutputForegroundColumn()
String	AverageKeyValueThresholdStatisticsGenerator.getOutputForegroundColumn()
String	KeyValueHistogramGenerator.getOutputKeyColumn()
String	FastKeyValueThresholdStatisticsGenerator.getOutputThresholdColumn()
String	KeyValueThresholdStatisticsGenerator.getOutputThresholdColumn()
String	AverageKeyValueThresholdStatisticsGenerator.getOutputThresholdColumn()
String	KeyValueHistogramGenerator.getOutputValueColumn()
String	HistogramGenerator.getSliceAnnotation()
ImageROITargetArea	KeyValueAveragesGenerator.getSourceArea()
ImageROITargetArea	KeyValueHistogramGenerator.getSourceArea()
ImageROITargetArea	KeyValueThresholdPartitionGenerator.getSourceArea()
ImageROITargetArea	KeyValueThresholdPartitionAveragesGenerator.getSourceArea()
OptionalStringParameter	KeyValueAveragesGenerator.getSumColumnName()
JIPipeExpressionParameter	KeyValueThresholdPartitionGenerator.GeneratedColumn.getValue()
boolean	HistogramGenerator.isApplyPerSlice()
boolean	KeyValueHistogramGenerator.isCumulative()
boolean	FastKeyValueThresholdStatisticsGenerator.isInvertThreshold()
boolean	KeyValueThresholdStatisticsGenerator.isInvertThreshold()
boolean	AverageKeyValueThresholdStatisticsGenerator.isInvertThreshold()
boolean	HistogramGenerator.isNormalize()
boolean	KeyValueHistogramGenerator.isNormalize()
boolean	KeyValueThresholdPartitionGenerator.GeneratedColumn.isSkipEmpty()
void	HistogramGenerator.setApplyPerSlice(boolean applyPerSlice)
void	KeyValueThresholdPartitionAveragesGenerator.setClass0CountColumnName(OptionalStringParameter class0CountColumnName)
void	KeyValueThresholdPartitionAveragesGenerator.setClass0MeanColumnName(OptionalStringParameter class0MeanColumnName)
void	KeyValueThresholdPartitionAveragesGenerator.setClass0SumColumnName(OptionalStringParameter class0SumColumnName)
void	KeyValueThresholdPartitionAveragesGenerator.setClass1CountColumnName(OptionalStringParameter class1CountColumnName)
void	KeyValueThresholdPartitionAveragesGenerator.setClass1MeanColumnName(OptionalStringParameter class1MeanColumnName)
void	KeyValueThresholdPartitionAveragesGenerator.setClass1SumColumnName(OptionalStringParameter class1SumColumnName)
void	KeyValueAveragesGenerator.setCountColumnName(OptionalStringParameter countColumnName)
void	KeyValueHistogramGenerator.setCumulative(boolean cumulative)
void	KeyValueThresholdPartitionGenerator.setGeneratedColumns(ParameterCollectionList generatedColumns)
void	KeyValueHistogramGenerator.setIntegrationFunction(JIPipeExpressionParameter integrationFunction)
void	KeyValueThresholdStatisticsGenerator.setIntegrationFunctionBackground(JIPipeExpressionParameter integrationFunctionBackground)
void	FastKeyValueThresholdStatisticsGenerator.setIntegrationFunctionBackground(TableColumnIntegrationParameter integrationFunctionBackground)
void	KeyValueThresholdStatisticsGenerator.setIntegrationFunctionForeground(JIPipeExpressionParameter integrationFunctionForeground)
void	FastKeyValueThresholdStatisticsGenerator.setIntegrationFunctionForeground(TableColumnIntegrationParameter integrationFunctionForeground)
void	FastKeyValueThresholdStatisticsGenerator.setInvertThreshold(boolean invertThreshold)
void	KeyValueThresholdStatisticsGenerator.setInvertThreshold(boolean invertThreshold)
void	AverageKeyValueThresholdStatisticsGenerator.setInvertThreshold(boolean invertThreshold)
void	KeyValueAveragesGenerator.setKeyColumnName(OptionalStringParameter keyColumnName)
void	KeyValueThresholdPartitionAveragesGenerator.setKeyColumnName(OptionalStringParameter keyColumnName)
void	KeyValueAveragesGenerator.setMeanColumnName(OptionalStringParameter meanColumnName)
void	HistogramGenerator.setMultiChannelMode(HistogramGenerator.MultiChannelMode multiChannelMode)
void	KeyValueThresholdPartitionGenerator.GeneratedColumn.setName(String name)
void	HistogramGenerator.setNormalize(boolean normalize)
void	KeyValueHistogramGenerator.setNormalize(boolean normalize)
void	FastKeyValueThresholdStatisticsGenerator.setOutputBackgroundColumn(String outputBackgroundColumn)
void	KeyValueThresholdStatisticsGenerator.setOutputBackgroundColumn(String outputBackgroundColumn)
void	AverageKeyValueThresholdStatisticsGenerator.setOutputBackgroundColumn(String outputBackgroundColumn)
void	FastKeyValueThresholdStatisticsGenerator.setOutputForegroundColumn(String outputForegroundColumn)
void	KeyValueThresholdStatisticsGenerator.setOutputForegroundColumn(String outputForegroundColumn)
void	AverageKeyValueThresholdStatisticsGenerator.setOutputForegroundColumn(String outputForegroundColumn)
void	KeyValueHistogramGenerator.setOutputKeyColumn(String outputKeyColumn)
void	FastKeyValueThresholdStatisticsGenerator.setOutputThresholdColumn(String outputThresholdColumn)
void	KeyValueThresholdStatisticsGenerator.setOutputThresholdColumn(String outputThresholdColumn)
void	AverageKeyValueThresholdStatisticsGenerator.setOutputThresholdColumn(String outputThresholdColumn)
void	KeyValueHistogramGenerator.setOutputValueColumn(String outputValueColumn)
void	KeyValueThresholdPartitionGenerator.GeneratedColumn.setSkipEmpty(boolean skipEmpty)
void	HistogramGenerator.setSliceAnnotation(String sliceAnnotation)
void	KeyValueAveragesGenerator.setSourceArea(ImageROITargetArea sourceArea)
void	KeyValueHistogramGenerator.setSourceArea(ImageROITargetArea sourceArea)
void	KeyValueThresholdPartitionGenerator.setSourceArea(ImageROITargetArea sourceArea)
void	KeyValueThresholdPartitionAveragesGenerator.setSourceArea(ImageROITargetArea sourceArea)
void	KeyValueAveragesGenerator.setSumColumnName(OptionalStringParameter sumColumnName)
void	KeyValueThresholdPartitionGenerator.GeneratedColumn.setValue(JIPipeExpressionParameter value)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold with annotations of type JIPipeParameter

Modifier and Type	Method and Description
AutoThreshold2DAlgorithm	BrightSpotsSegmentation2DAlgorithm.getAutoThresholding()
AutoThreshold2DAlgorithm	InternalGradientSegmentation2DAlgorithm.getAutoThresholding()
AutoThreshold2DAlgorithm	HessianSegmentation2DAlgorithm.getAutoThresholding()
CLAHEContrastEnhancer	InternalGradientSegmentation2DAlgorithm.getContrastEnhancer()
int	HessianSegmentation2DAlgorithm.getDespeckleIterations()
int	BrightSpotsSegmentation2DAlgorithm.getDilationErodeSteps()
int	InternalGradientSegmentation2DAlgorithm.getDilationIterations()
EigenvalueSelection2D	HessianSegmentation2DAlgorithm.getEigenvalueSelection()
int	InternalGradientSegmentation2DAlgorithm.getErosionIterations()
double	BrightSpotsSegmentation2DAlgorithm.getGaussianSigma()
double	InternalGradientSegmentation2DAlgorithm.getGaussSigma()
double	HessianSegmentation2DAlgorithm.getGradientRadius()
int	InternalGradientSegmentation2DAlgorithm.getInternalGradientRadius()
float	ManualThreshold32F2DAlgorithm.getMaxThreshold()
OptionalTextAnnotationNameParameter	ManualThreshold32F2DAlgorithm.getMaxThresholdAnnotation()
OptionalTextAnnotationNameParameter	ThresholdByAnnotation2DAlgorithm.getMaxThresholdAnnotation()
OptionalTextAnnotationNameParameter	ManualThreshold8U2DAlgorithm.getMaxThresholdAnnotation()
OptionalTextAnnotationNameParameter	ManualThreshold16U2DAlgorithm.getMaxThresholdAnnotation()
CustomAutoThreshold2D16Uv2Algorithm.ThresholdParameters	CustomAutoThreshold2D16Uv2Algorithm.getMaxThresholdParameters()
CustomAutoThreshold2D8Uv2Algorithm.ThresholdParameters	CustomAutoThreshold2D8Uv2Algorithm.getMaxThresholdParameters()
CustomAutoThreshold2D32Fv2Algorithm.ThresholdParameters	CustomAutoThreshold2D32Fv2Algorithm.getMaxThresholdParameters()
ij.process.AutoThresholder.Method	AutoThreshold2DAlgorithm.getMethod()
float	ManualThreshold32F2DAlgorithm.getMinThreshold()
OptionalTextAnnotationNameParameter	ManualThreshold32F2DAlgorithm.getMinThresholdAnnotation()
OptionalTextAnnotationNameParameter	ThresholdByAnnotation2DAlgorithm.getMinThresholdAnnotation()
OptionalTextAnnotationNameParameter	ManualThreshold8U2DAlgorithm.getMinThresholdAnnotation()
OptionalTextAnnotationNameParameter	ManualThreshold16U2DAlgorithm.getMinThresholdAnnotation()
CustomAutoThreshold2D16Uv2Algorithm.ThresholdParameters	CustomAutoThreshold2D16Uv2Algorithm.getMinThresholdParameters()
CustomAutoThreshold2D8Uv2Algorithm.ThresholdParameters	CustomAutoThreshold2D8Uv2Algorithm.getMinThresholdParameters()
CustomAutoThreshold2D32Fv2Algorithm.ThresholdParameters	CustomAutoThreshold2D32Fv2Algorithm.getMinThresholdParameters()
double	PercentileThreshold8U2DAlgorithm.getPercentile()
int	BrightSpotsSegmentation2DAlgorithm.getRollingBallRadius()
double	HessianSegmentation2DAlgorithm.getSmoothing()
ImageROITargetArea	CustomAutoThreshold2D16Uv2Algorithm.getSourceArea()
ImageROITargetArea	CustomAutoThreshold2D8Uv2Algorithm.getSourceArea()
ImageROITargetArea	AutoThreshold2DAlgorithm.getSourceArea()
ImageROITargetArea	CustomAutoThreshold2D16UAlgorithm.getSourceArea()
ImageROITargetArea	CustomAutoThreshold2D32FAlgorithm.getSourceArea()
ImageROITargetArea	CustomAutoThreshold2D8UAlgorithm.getSourceArea()
ImageROITargetArea	CustomAutoThreshold2D32Fv2Algorithm.getSourceArea()
IntNumberRangeParameter	ManualThreshold8U2DAlgorithm.getThreshold()
IntNumberRangeParameter	ManualThreshold16U2DAlgorithm.getThreshold()
OptionalTextAnnotationNameParameter	CustomAutoThreshold2D16Uv2Algorithm.ThresholdParameters.getThresholdAnnotation()
OptionalTextAnnotationNameParameter	CustomAutoThreshold2D8Uv2Algorithm.ThresholdParameters.getThresholdAnnotation()
OptionalTextAnnotationNameParameter	AutoThreshold2DAlgorithm.getThresholdAnnotation()
OptionalTextAnnotationNameParameter	CustomAutoThreshold2D16UAlgorithm.getThresholdAnnotation()
OptionalTextAnnotationNameParameter	CustomAutoThreshold2D32FAlgorithm.getThresholdAnnotation()
OptionalTextAnnotationNameParameter	CustomAutoThreshold2D8UAlgorithm.getThresholdAnnotation()
OptionalTextAnnotationNameParameter	CustomAutoThreshold2D32Fv2Algorithm.ThresholdParameters.getThresholdAnnotation()
JIPipeTextAnnotationMergeMode	CustomAutoThreshold2D16Uv2Algorithm.getThresholdAnnotationStrategy()
JIPipeTextAnnotationMergeMode	CustomAutoThreshold2D8Uv2Algorithm.getThresholdAnnotationStrategy()
JIPipeTextAnnotationMergeMode	ManualThreshold32F2DAlgorithm.getThresholdAnnotationStrategy()
JIPipeTextAnnotationMergeMode	AutoThreshold2DAlgorithm.getThresholdAnnotationStrategy()
JIPipeTextAnnotationMergeMode	CustomAutoThreshold2D16UAlgorithm.getThresholdAnnotationStrategy()
JIPipeTextAnnotationMergeMode	ManualThreshold8U2DAlgorithm.getThresholdAnnotationStrategy()
JIPipeTextAnnotationMergeMode	CustomAutoThreshold2D32FAlgorithm.getThresholdAnnotationStrategy()
JIPipeTextAnnotationMergeMode	CustomAutoThreshold2D8UAlgorithm.getThresholdAnnotationStrategy()
JIPipeTextAnnotationMergeMode	CustomAutoThreshold2D32Fv2Algorithm.getThresholdAnnotationStrategy()
JIPipeTextAnnotationMergeMode	ManualThreshold16U2DAlgorithm.getThresholdAnnotationStrategy()
JIPipeExpressionParameter	CustomAutoThreshold2D16Uv2Algorithm.ThresholdParameters.getThresholdCalculationExpression()
JIPipeExpressionParameter	CustomAutoThreshold2D8Uv2Algorithm.ThresholdParameters.getThresholdCalculationExpression()
JIPipeExpressionParameter	CustomAutoThreshold2D16UAlgorithm.getThresholdCalculationExpression()
JIPipeExpressionParameter	CustomAutoThreshold2D32FAlgorithm.getThresholdCalculationExpression()
JIPipeExpressionParameter	CustomAutoThreshold2D8UAlgorithm.getThresholdCalculationExpression()
JIPipeExpressionParameter	CustomAutoThreshold2D32Fv2Algorithm.ThresholdParameters.getThresholdCalculationExpression()
JIPipeExpressionParameter	CustomAutoThreshold2D16Uv2Algorithm.ThresholdParameters.getThresholdCombinationExpression()
JIPipeExpressionParameter	CustomAutoThreshold2D8Uv2Algorithm.ThresholdParameters.getThresholdCombinationExpression()
JIPipeExpressionParameter	AutoThreshold2DAlgorithm.getThresholdCombinationExpression()
JIPipeExpressionParameter	CustomAutoThreshold2D16UAlgorithm.getThresholdCombinationExpression()
JIPipeExpressionParameter	CustomAutoThreshold2D32FAlgorithm.getThresholdCombinationExpression()
JIPipeExpressionParameter	CustomAutoThreshold2D8UAlgorithm.getThresholdCombinationExpression()
JIPipeExpressionParameter	CustomAutoThreshold2D32Fv2Algorithm.ThresholdParameters.getThresholdCombinationExpression()
AutoThreshold2DAlgorithm.SliceThresholdMode	CustomAutoThreshold2D16Uv2Algorithm.getThresholdMode()
AutoThreshold2DAlgorithm.SliceThresholdMode	CustomAutoThreshold2D8Uv2Algorithm.getThresholdMode()
AutoThreshold2DAlgorithm.SliceThresholdMode	AutoThreshold2DAlgorithm.getThresholdMode()
AutoThreshold2DAlgorithm.SliceThresholdMode	CustomAutoThreshold2D16UAlgorithm.getThresholdMode()
AutoThreshold2DAlgorithm.SliceThresholdMode	CustomAutoThreshold2D32FAlgorithm.getThresholdMode()
AutoThreshold2DAlgorithm.SliceThresholdMode	CustomAutoThreshold2D8UAlgorithm.getThresholdMode()
AutoThreshold2DAlgorithm.SliceThresholdMode	CustomAutoThreshold2D32Fv2Algorithm.getThresholdMode()
boolean	CustomAutoThreshold2D16Uv2Algorithm.isAccessPixels()
boolean	CustomAutoThreshold2D8Uv2Algorithm.isAccessPixels()
boolean	CustomAutoThreshold2D16UAlgorithm.isAccessPixels()
boolean	CustomAutoThreshold2D32FAlgorithm.isAccessPixels()
boolean	CustomAutoThreshold2D8UAlgorithm.isAccessPixels()
boolean	CustomAutoThreshold2D32Fv2Algorithm.isAccessPixels()
boolean	HessianSegmentation2DAlgorithm.isApplyDespeckle()
boolean	InternalGradientSegmentation2DAlgorithm.isApplyFirstCLAHE()
boolean	InternalGradientSegmentation2DAlgorithm.isApplyGaussian()
boolean	HessianSegmentation2DAlgorithm.isApplyInternalGradient()
boolean	InternalGradientSegmentation2DAlgorithm.isApplySecondCLAHE()
boolean	HessianSegmentation2DAlgorithm.isCompareAbsolute()
boolean	AutoThreshold2DAlgorithm.isDarkBackground()
void	CustomAutoThreshold2D16Uv2Algorithm.setAccessPixels(boolean accessPixels)
void	CustomAutoThreshold2D8Uv2Algorithm.setAccessPixels(boolean accessPixels)
void	CustomAutoThreshold2D16UAlgorithm.setAccessPixels(boolean accessPixels)
void	CustomAutoThreshold2D32FAlgorithm.setAccessPixels(boolean accessPixels)
void	CustomAutoThreshold2D8UAlgorithm.setAccessPixels(boolean accessPixels)
void	CustomAutoThreshold2D32Fv2Algorithm.setAccessPixels(boolean accessPixels)
void	HessianSegmentation2DAlgorithm.setApplyDespeckle(boolean applyDespeckle)
void	InternalGradientSegmentation2DAlgorithm.setApplyFirstCLAHE(boolean applyFirstCLAHE)
void	InternalGradientSegmentation2DAlgorithm.setApplyGaussian(boolean applyGaussian)
void	HessianSegmentation2DAlgorithm.setApplyInternalGradient(boolean applyInternalGradient)
void	InternalGradientSegmentation2DAlgorithm.setApplySecondCLAHE(boolean applySecondCLAHE)
void	HessianSegmentation2DAlgorithm.setCompareAbsolute(boolean compareAbsolute)
void	AutoThreshold2DAlgorithm.setDarkBackground(boolean darkBackground)
void	HessianSegmentation2DAlgorithm.setDespeckleIterations(int despeckleIterations)
void	BrightSpotsSegmentation2DAlgorithm.setDilationErodeSteps(int dilationErodeSteps)
void	InternalGradientSegmentation2DAlgorithm.setDilationIterations(int dilationIterations)
void	HessianSegmentation2DAlgorithm.setEigenvalueSelection(EigenvalueSelection2D eigenvalueSelection)
void	InternalGradientSegmentation2DAlgorithm.setErosionIterations(int erosionIterations)
void	BrightSpotsSegmentation2DAlgorithm.setGaussianSigma(double gaussianSigma)
void	InternalGradientSegmentation2DAlgorithm.setGaussSigma(double gaussSigma)
void	HessianSegmentation2DAlgorithm.setGradientRadius(double gradientRadius)
void	InternalGradientSegmentation2DAlgorithm.setInternalGradientRadius(int internalGradientRadius)
void	ManualThreshold32F2DAlgorithm.setMaxThreshold(float maxThreshold)
void	ManualThreshold32F2DAlgorithm.setMaxThresholdAnnotation(OptionalTextAnnotationNameParameter maxThresholdAnnotation)
void	ThresholdByAnnotation2DAlgorithm.setMaxThresholdAnnotation(OptionalTextAnnotationNameParameter maxThresholdAnnotation)
void	ManualThreshold8U2DAlgorithm.setMaxThresholdAnnotation(OptionalTextAnnotationNameParameter maxThresholdAnnotation)
void	ManualThreshold16U2DAlgorithm.setMaxThresholdAnnotation(OptionalTextAnnotationNameParameter maxThresholdAnnotation)
void	AutoThreshold2DAlgorithm.setMethod(ij.process.AutoThresholder.Method method)
void	ManualThreshold32F2DAlgorithm.setMinThreshold(float minThreshold)
void	ManualThreshold32F2DAlgorithm.setMinThresholdAnnotation(OptionalTextAnnotationNameParameter minThresholdAnnotation)
void	ThresholdByAnnotation2DAlgorithm.setMinThresholdAnnotation(OptionalTextAnnotationNameParameter minThresholdAnnotation)
void	ManualThreshold8U2DAlgorithm.setMinThresholdAnnotation(OptionalTextAnnotationNameParameter minThresholdAnnotation)
void	ManualThreshold16U2DAlgorithm.setMinThresholdAnnotation(OptionalTextAnnotationNameParameter minThresholdAnnotation)
void	PercentileThreshold8U2DAlgorithm.setPercentile(double percentile)
void	BrightSpotsSegmentation2DAlgorithm.setRollingBallRadius(int rollingBallRadius)
void	HessianSegmentation2DAlgorithm.setSmoothing(double smoothing)
void	CustomAutoThreshold2D16Uv2Algorithm.setSourceArea(ImageROITargetArea sourceArea)
void	CustomAutoThreshold2D8Uv2Algorithm.setSourceArea(ImageROITargetArea sourceArea)
void	AutoThreshold2DAlgorithm.setSourceArea(ImageROITargetArea sourceArea)
void	CustomAutoThreshold2D16UAlgorithm.setSourceArea(ImageROITargetArea sourceArea)
void	CustomAutoThreshold2D32FAlgorithm.setSourceArea(ImageROITargetArea sourceArea)
void	CustomAutoThreshold2D8UAlgorithm.setSourceArea(ImageROITargetArea sourceArea)
void	CustomAutoThreshold2D32Fv2Algorithm.setSourceArea(ImageROITargetArea sourceArea)
void	ManualThreshold8U2DAlgorithm.setThreshold(IntNumberRangeParameter threshold)
void	ManualThreshold16U2DAlgorithm.setThreshold(IntNumberRangeParameter threshold)
void	CustomAutoThreshold2D16Uv2Algorithm.ThresholdParameters.setThresholdAnnotation(OptionalTextAnnotationNameParameter thresholdAnnotation)
void	CustomAutoThreshold2D8Uv2Algorithm.ThresholdParameters.setThresholdAnnotation(OptionalTextAnnotationNameParameter thresholdAnnotation)
void	AutoThreshold2DAlgorithm.setThresholdAnnotation(OptionalTextAnnotationNameParameter thresholdAnnotation)
void	CustomAutoThreshold2D16UAlgorithm.setThresholdAnnotation(OptionalTextAnnotationNameParameter thresholdAnnotation)
void	CustomAutoThreshold2D32FAlgorithm.setThresholdAnnotation(OptionalTextAnnotationNameParameter thresholdAnnotation)
void	CustomAutoThreshold2D8UAlgorithm.setThresholdAnnotation(OptionalTextAnnotationNameParameter thresholdAnnotation)
void	CustomAutoThreshold2D32Fv2Algorithm.ThresholdParameters.setThresholdAnnotation(OptionalTextAnnotationNameParameter thresholdAnnotation)
void	CustomAutoThreshold2D16Uv2Algorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy)
void	CustomAutoThreshold2D8Uv2Algorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy)
void	ManualThreshold32F2DAlgorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy)
void	AutoThreshold2DAlgorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy)
void	CustomAutoThreshold2D16UAlgorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy)
void	ManualThreshold8U2DAlgorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy)
void	CustomAutoThreshold2D32FAlgorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy)
void	CustomAutoThreshold2D8UAlgorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy)
void	CustomAutoThreshold2D32Fv2Algorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy)
void	ManualThreshold16U2DAlgorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy)
void	CustomAutoThreshold2D16Uv2Algorithm.ThresholdParameters.setThresholdCalculationExpression(JIPipeExpressionParameter thresholdCalculationExpression)
void	CustomAutoThreshold2D8Uv2Algorithm.ThresholdParameters.setThresholdCalculationExpression(JIPipeExpressionParameter thresholdCalculationExpression)
void	CustomAutoThreshold2D16UAlgorithm.setThresholdCalculationExpression(JIPipeExpressionParameter thresholdCalculationExpression)
void	CustomAutoThreshold2D32FAlgorithm.setThresholdCalculationExpression(JIPipeExpressionParameter thresholdCalculationExpression)
void	CustomAutoThreshold2D8UAlgorithm.setThresholdCalculationExpression(JIPipeExpressionParameter thresholdCalculationExpression)
void	CustomAutoThreshold2D32Fv2Algorithm.ThresholdParameters.setThresholdCalculationExpression(JIPipeExpressionParameter thresholdCalculationExpression)
void	CustomAutoThreshold2D16Uv2Algorithm.ThresholdParameters.setThresholdCombinationExpression(JIPipeExpressionParameter thresholdCombinationExpression)
void	CustomAutoThreshold2D8Uv2Algorithm.ThresholdParameters.setThresholdCombinationExpression(JIPipeExpressionParameter thresholdCombinationExpression)
void	AutoThreshold2DAlgorithm.setThresholdCombinationExpression(JIPipeExpressionParameter thresholdCombinationExpression)
void	CustomAutoThreshold2D16UAlgorithm.setThresholdCombinationExpression(JIPipeExpressionParameter thresholdCombinationExpression)
void	CustomAutoThreshold2D32FAlgorithm.setThresholdCombinationExpression(JIPipeExpressionParameter thresholdCombinationExpression)
void	CustomAutoThreshold2D8UAlgorithm.setThresholdCombinationExpression(JIPipeExpressionParameter thresholdCombinationExpression)
void	CustomAutoThreshold2D32Fv2Algorithm.ThresholdParameters.setThresholdCombinationExpression(JIPipeExpressionParameter thresholdCombinationExpression)
void	CustomAutoThreshold2D16Uv2Algorithm.setThresholdMode(AutoThreshold2DAlgorithm.SliceThresholdMode thresholdMode)
void	CustomAutoThreshold2D8Uv2Algorithm.setThresholdMode(AutoThreshold2DAlgorithm.SliceThresholdMode thresholdMode)
void	AutoThreshold2DAlgorithm.setThresholdMode(AutoThreshold2DAlgorithm.SliceThresholdMode thresholdMode)
void	CustomAutoThreshold2D16UAlgorithm.setThresholdMode(AutoThreshold2DAlgorithm.SliceThresholdMode thresholdMode)
void	CustomAutoThreshold2D32FAlgorithm.setThresholdMode(AutoThreshold2DAlgorithm.SliceThresholdMode thresholdMode)
void	CustomAutoThreshold2D8UAlgorithm.setThresholdMode(AutoThreshold2DAlgorithm.SliceThresholdMode thresholdMode)
void	CustomAutoThreshold2D32Fv2Algorithm.setThresholdMode(AutoThreshold2DAlgorithm.SliceThresholdMode thresholdMode)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold.color

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold.color with annotations of type JIPipeParameter

Modifier and Type	Method and Description
IntNumberRangeParameter	ManualRGBThreshold2DAlgorithm.getBlueThreshold()
IntNumberRangeParameter	ManualLABThreshold2DAlgorithm.getBlueYellowThreshold()
IntNumberRangeParameter	ManualHSBThreshold2DAlgorithm.getBrightnessThreshold()
JIPipeExpressionParameter	ColorThresholdExpression2D.getExpression()
IntNumberRangeParameter	ManualLABThreshold2DAlgorithm.getGreenRedThreshold()
IntNumberRangeParameter	ManualRGBThreshold2DAlgorithm.getGreenThreshold()
IntNumberRangeParameter	ManualHSBThreshold2DAlgorithm.getHueThreshold()
IntNumberRangeParameter	ManualLABThreshold2DAlgorithm.getLightnessThreshold()
OptionalTextAnnotationNameParameter	ManualRGBThreshold2DAlgorithm.getMaxBlueThresholdAnnotation()
OptionalTextAnnotationNameParameter	ManualLABThreshold2DAlgorithm.getMaxBlueYellowThresholdAnnotation()
OptionalTextAnnotationNameParameter	ManualHSBThreshold2DAlgorithm.getMaxBrightnessThresholdAnnotation()
OptionalTextAnnotationNameParameter	ManualLABThreshold2DAlgorithm.getMaxGreenRedThresholdAnnotation()
OptionalTextAnnotationNameParameter	ManualRGBThreshold2DAlgorithm.getMaxGreenThresholdAnnotation()
OptionalTextAnnotationNameParameter	ManualHSBThreshold2DAlgorithm.getMaxHueThresholdAnnotation()
OptionalTextAnnotationNameParameter	ManualLABThreshold2DAlgorithm.getMaxLightnessThresholdAnnotation()
OptionalTextAnnotationNameParameter	ManualRGBThreshold2DAlgorithm.getMaxRedThresholdAnnotation()
OptionalTextAnnotationNameParameter	ManualHSBThreshold2DAlgorithm.getMaxSaturationThresholdAnnotation()
OptionalTextAnnotationNameParameter	ManualRGBThreshold2DAlgorithm.getMinBlueThresholdAnnotation()
OptionalTextAnnotationNameParameter	ManualLABThreshold2DAlgorithm.getMinBlueYellowThresholdAnnotation()
OptionalTextAnnotationNameParameter	ManualHSBThreshold2DAlgorithm.getMinBrightnessThresholdAnnotation()
OptionalTextAnnotationNameParameter	ManualLABThreshold2DAlgorithm.getMinGreenRedThresholdAnnotation()
OptionalTextAnnotationNameParameter	ManualRGBThreshold2DAlgorithm.getMinGreenThresholdAnnotation()
OptionalTextAnnotationNameParameter	ManualHSBThreshold2DAlgorithm.getMinHueThresholdAnnotation()
OptionalTextAnnotationNameParameter	ManualLABThreshold2DAlgorithm.getMinLightnessThresholdAnnotation()
OptionalTextAnnotationNameParameter	ManualRGBThreshold2DAlgorithm.getMinRedThresholdAnnotation()
OptionalTextAnnotationNameParameter	ManualHSBThreshold2DAlgorithm.getMinSaturationThresholdAnnotation()
IntNumberRangeParameter	ManualRGBThreshold2DAlgorithm.getRedThreshold()
IntNumberRangeParameter	ManualHSBThreshold2DAlgorithm.getSaturationThreshold()
JIPipeTextAnnotationMergeMode	ManualHSBThreshold2DAlgorithm.getThresholdAnnotationStrategy()
JIPipeTextAnnotationMergeMode	ManualLABThreshold2DAlgorithm.getThresholdAnnotationStrategy()
JIPipeTextAnnotationMergeMode	ManualRGBThreshold2DAlgorithm.getThresholdAnnotationStrategy()
void	ManualRGBThreshold2DAlgorithm.setBlueThreshold(IntNumberRangeParameter blueThreshold)
void	ManualLABThreshold2DAlgorithm.setBlueYellowThreshold(IntNumberRangeParameter blueYellowThreshold)
void	ManualHSBThreshold2DAlgorithm.setBrightnessThreshold(IntNumberRangeParameter brightnessThreshold)
void	ColorThresholdExpression2D.setExpression(JIPipeExpressionParameter expression)
void	ManualLABThreshold2DAlgorithm.setGreenRedThreshold(IntNumberRangeParameter greenRedThreshold)
void	ManualRGBThreshold2DAlgorithm.setGreenThreshold(IntNumberRangeParameter greenThreshold)
void	ManualHSBThreshold2DAlgorithm.setHueThreshold(IntNumberRangeParameter hueThreshold)
void	ManualLABThreshold2DAlgorithm.setLightnessThreshold(IntNumberRangeParameter lightnessThreshold)
void	ManualRGBThreshold2DAlgorithm.setMaxBlueThresholdAnnotation(OptionalTextAnnotationNameParameter maxBlueThresholdAnnotation)
void	ManualLABThreshold2DAlgorithm.setMaxBlueYellowThresholdAnnotation(OptionalTextAnnotationNameParameter maxBlueYellowThresholdAnnotation)
void	ManualHSBThreshold2DAlgorithm.setMaxBrightnessThresholdAnnotation(OptionalTextAnnotationNameParameter maxBrightnessThresholdAnnotation)
void	ManualLABThreshold2DAlgorithm.setMaxGreenRedThresholdAnnotation(OptionalTextAnnotationNameParameter maxGreenRedThresholdAnnotation)
void	ManualRGBThreshold2DAlgorithm.setMaxGreenThresholdAnnotation(OptionalTextAnnotationNameParameter maxGreenThresholdAnnotation)
void	ManualHSBThreshold2DAlgorithm.setMaxHueThresholdAnnotation(OptionalTextAnnotationNameParameter maxHueThresholdAnnotation)
void	ManualLABThreshold2DAlgorithm.setMaxLightnessThresholdAnnotation(OptionalTextAnnotationNameParameter maxLightnessThresholdAnnotation)
void	ManualRGBThreshold2DAlgorithm.setMaxRedThresholdAnnotation(OptionalTextAnnotationNameParameter maxRedThresholdAnnotation)
void	ManualHSBThreshold2DAlgorithm.setMaxSaturationThresholdAnnotation(OptionalTextAnnotationNameParameter maxSaturationThresholdAnnotation)
void	ManualRGBThreshold2DAlgorithm.setMinBlueThresholdAnnotation(OptionalTextAnnotationNameParameter minBlueThresholdAnnotation)
void	ManualLABThreshold2DAlgorithm.setMinBlueYellowThresholdAnnotation(OptionalTextAnnotationNameParameter minBlueYellowThresholdAnnotation)
void	ManualHSBThreshold2DAlgorithm.setMinBrightnessThresholdAnnotation(OptionalTextAnnotationNameParameter minBrightnessThresholdAnnotation)
void	ManualLABThreshold2DAlgorithm.setMinGreenRedThresholdAnnotation(OptionalTextAnnotationNameParameter minGreenRedThresholdAnnotation)
void	ManualRGBThreshold2DAlgorithm.setMinGreenThresholdAnnotation(OptionalTextAnnotationNameParameter minGreenThresholdAnnotation)
void	ManualHSBThreshold2DAlgorithm.setMinHueThresholdAnnotation(OptionalTextAnnotationNameParameter minHueThresholdAnnotation)
void	ManualLABThreshold2DAlgorithm.setMinLightnessThresholdAnnotation(OptionalTextAnnotationNameParameter minLightnessThresholdAnnotation)
void	ManualRGBThreshold2DAlgorithm.setMinRedThresholdAnnotation(OptionalTextAnnotationNameParameter minRedThresholdAnnotation)
void	ManualHSBThreshold2DAlgorithm.setMinSaturationThresholdAnnotation(OptionalTextAnnotationNameParameter minSaturationThresholdAnnotation)
void	ManualRGBThreshold2DAlgorithm.setRedThreshold(IntNumberRangeParameter redThreshold)
void	ManualHSBThreshold2DAlgorithm.setSaturationThreshold(IntNumberRangeParameter saturationThreshold)
void	ManualHSBThreshold2DAlgorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy)
void	ManualLABThreshold2DAlgorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy)
void	ManualRGBThreshold2DAlgorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold.iterative

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold.iterative with annotations of type JIPipeParameter

Modifier and Type	Method and Description
IterativeThresholdByROIStatistics2DAlgorithm.FilteringParameters	IterativeThresholdByROIStatistics2DAlgorithm.getFilteringParameters()
ImageStatisticsSetParameter	IterativeThresholdByROIStatistics2DAlgorithm.getMeasurements()
JIPipeExpressionParameter	IterativeThresholdByROIStatistics2DAlgorithm.FilteringParameters.getRoiFilterExpression()
JIPipeExpressionParameter	IterativeThresholdByROIStatistics2DAlgorithm.ScoreParameters.getScoreAccumulationExpression()
OptionalJIPipeExpressionParameter	IterativeThresholdByROIStatistics2DAlgorithm.ScoreParameters.getScoreExpression()
IterativeThresholdByROIStatistics2DAlgorithm.ScoreParameters	IterativeThresholdByROIStatistics2DAlgorithm.getScoreParameters()
OptionalTextAnnotationNameParameter	IterativeThresholdByROIStatistics2DAlgorithm.getThresholdAnnotation()
JIPipeTextAnnotationMergeMode	IterativeThresholdByROIStatistics2DAlgorithm.getThresholdAnnotationStrategy()
JIPipeExpressionParameter	IterativeThresholdByROIStatistics2DAlgorithm.getThresholdCombinationExpression()
JIPipeExpressionParameter	IterativeThresholdByROIStatistics2DAlgorithm.FilteringParameters.getThresholdCriteriaExpression()
IntegerRange	IterativeThresholdByROIStatistics2DAlgorithm.getThresholds()
boolean	IterativeThresholdByROIStatistics2DAlgorithm.isExcludeEdgeROIs()
boolean	IterativeThresholdByROIStatistics2DAlgorithm.isMeasureInPhysicalUnits()
void	IterativeThresholdByROIStatistics2DAlgorithm.setExcludeEdgeROIs(boolean excludeEdgeROIs)
void	IterativeThresholdByROIStatistics2DAlgorithm.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	IterativeThresholdByROIStatistics2DAlgorithm.setMeasurements(ImageStatisticsSetParameter measurements)
void	IterativeThresholdByROIStatistics2DAlgorithm.FilteringParameters.setRoiFilterExpression(JIPipeExpressionParameter roiFilterExpression)
void	IterativeThresholdByROIStatistics2DAlgorithm.ScoreParameters.setScoreAccumulationExpression(JIPipeExpressionParameter scoreAccumulationExpression)
void	IterativeThresholdByROIStatistics2DAlgorithm.ScoreParameters.setScoreExpression(OptionalJIPipeExpressionParameter scoreExpression)
void	IterativeThresholdByROIStatistics2DAlgorithm.setThresholdAnnotation(OptionalTextAnnotationNameParameter thresholdAnnotation)
void	IterativeThresholdByROIStatistics2DAlgorithm.setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy)
void	IterativeThresholdByROIStatistics2DAlgorithm.setThresholdCombinationExpression(JIPipeExpressionParameter thresholdCombinationExpression)
void	IterativeThresholdByROIStatistics2DAlgorithm.FilteringParameters.setThresholdCriteriaExpression(JIPipeExpressionParameter thresholdCriteriaExpression)
void	IterativeThresholdByROIStatistics2DAlgorithm.setThresholds(IntegerRange thresholds)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold.local

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold.local with annotations of type JIPipeParameter

Modifier and Type	Method and Description
int	BernsenLocalAutoThreshold2DAlgorithm.getContrastThreshold()
double	NiblackLocalAutoThreshold2DAlgorithm.getK()
double	PhansalkarLocalAutoThreshold2DAlgorithm.getK()
double	SauvolaLocalAutoThreshold2DAlgorithm.getK()
LocalAutoThreshold2DAlgorithm.Method	LocalAutoThreshold2DAlgorithm.getMethod()
int	LocalAutoThreshold2DAlgorithm.getModifier()
int	NiblackLocalAutoThreshold2DAlgorithm.getModifier()
double	PhansalkarLocalAutoThreshold2DAlgorithm.getP()
double	PhansalkarLocalAutoThreshold2DAlgorithm.getQ()
double	PhansalkarLocalAutoThreshold2DAlgorithm.getR()
double	SauvolaLocalAutoThreshold2DAlgorithm.getR()
int	LocalAutoThreshold2DAlgorithm.getRadius()
int	ContrastLocalAutoThreshold2DAlgorithm.getRadius()
int	NiblackLocalAutoThreshold2DAlgorithm.getRadius()
int	PhansalkarLocalAutoThreshold2DAlgorithm.getRadius()
int	SauvolaLocalAutoThreshold2DAlgorithm.getRadius()
int	BernsenLocalAutoThreshold2DAlgorithm.getRadius()
boolean	LocalAutoThreshold2DAlgorithm.isDarkBackground()
boolean	ContrastLocalAutoThreshold2DAlgorithm.isDarkBackground()
boolean	NiblackLocalAutoThreshold2DAlgorithm.isDarkBackground()
boolean	PhansalkarLocalAutoThreshold2DAlgorithm.isDarkBackground()
boolean	SauvolaLocalAutoThreshold2DAlgorithm.isDarkBackground()
boolean	BernsenLocalAutoThreshold2DAlgorithm.isDarkBackground()
void	BernsenLocalAutoThreshold2DAlgorithm.setContrastThreshold(int contrastThreshold)
void	LocalAutoThreshold2DAlgorithm.setDarkBackground(boolean darkBackground)
void	ContrastLocalAutoThreshold2DAlgorithm.setDarkBackground(boolean darkBackground)
void	NiblackLocalAutoThreshold2DAlgorithm.setDarkBackground(boolean darkBackground)
void	PhansalkarLocalAutoThreshold2DAlgorithm.setDarkBackground(boolean darkBackground)
void	SauvolaLocalAutoThreshold2DAlgorithm.setDarkBackground(boolean darkBackground)
void	BernsenLocalAutoThreshold2DAlgorithm.setDarkBackground(boolean darkBackground)
void	NiblackLocalAutoThreshold2DAlgorithm.setK(double k)
void	PhansalkarLocalAutoThreshold2DAlgorithm.setK(double k)
void	SauvolaLocalAutoThreshold2DAlgorithm.setK(double k)
void	LocalAutoThreshold2DAlgorithm.setMethod(LocalAutoThreshold2DAlgorithm.Method method)
void	LocalAutoThreshold2DAlgorithm.setModifier(int modifier)
void	NiblackLocalAutoThreshold2DAlgorithm.setModifier(int modifier)
void	PhansalkarLocalAutoThreshold2DAlgorithm.setP(double p)
void	PhansalkarLocalAutoThreshold2DAlgorithm.setQ(double q)
void	PhansalkarLocalAutoThreshold2DAlgorithm.setR(double r)
void	SauvolaLocalAutoThreshold2DAlgorithm.setR(double r)
boolean	LocalAutoThreshold2DAlgorithm.setRadius(int radius)
boolean	ContrastLocalAutoThreshold2DAlgorithm.setRadius(int radius)
boolean	NiblackLocalAutoThreshold2DAlgorithm.setRadius(int radius)
boolean	PhansalkarLocalAutoThreshold2DAlgorithm.setRadius(int radius)
boolean	SauvolaLocalAutoThreshold2DAlgorithm.setRadius(int radius)
boolean	BernsenLocalAutoThreshold2DAlgorithm.setRadius(int radius)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.transform

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.transform with annotations of type JIPipeParameter

Modifier and Type	Method and Description
Anchor	CanvasEqualizer.getAnchor()
Anchor	TransformRotateFree2DAlgorithm.getAnchor()
Anchor	TransformScale2DAlgorithm.getAnchor()
Anchor	TransformExpandCanvas2DAlgorithm.getAnchor()
Anchor	TransformEqualCanvasSize2DAlgorithm.getAnchor()
double	TransformRotateFree2DAlgorithm.getAngle()
OptionalTextAnnotationNameParameter	LineMirror2DFromRoiAlgorithm.getAnnotateWithRoiIndex()
OptionalTextAnnotationNameParameter	LineMirror2DFromRoiAlgorithm.getAnnotateWithRoiName()
OptionalTextAnnotationNameParameter	TransformCrop2DAlgorithm.getAnnotationBoundingHeight()
OptionalTextAnnotationNameParameter	TransformCrop2DAlgorithm.getAnnotationBoundingWidth()
JIPipeTextAnnotationMergeMode	TileImage2Dv2Algorithm.getAnnotationMergeStrategy()
JIPipeTextAnnotationMergeMode	TileImage2DAlgorithm.getAnnotationMergeStrategy() Deprecated.
JIPipeTextAnnotationMergeMode	TransformCrop2DAlgorithm.getAnnotationMergeStrategy()
OptionalTextAnnotationNameParameter	TransformCrop2DAlgorithm.getAnnotationX()
OptionalTextAnnotationNameParameter	TransformCrop2DAlgorithm.getAnnotationY()
Color	TransformScale2DAlgorithm.getBackground()
Color	CanvasEqualizer.getBackgroundColor()
Color	TransformRotateFree2DAlgorithm.getBackgroundColor()
Color	TransformExpandCanvas2DAlgorithm.getBackgroundColor()
Color	TransformEqualCanvasSize2DAlgorithm.getBackgroundColor()
JIPipeExpressionParameter	AddBorder2DAlgorithm.getBorderColor()
BorderMode	TileImage2Dv2Algorithm.getBorderMode()
BorderMode	TileImage2DAlgorithm.getBorderMode() Deprecated.
BorderMode	AddBorder2DAlgorithm.getBorderMode()
JIPipeExpressionParameter	TransformSetHyperstackDimensionsAlgorithm.getcAxis()
TransformFlip2DAlgorithm.FlipMode	TransformFlip2DAlgorithm.getFlipMode()
OptionalTextAnnotationNameParameter	TileImage2Dv2Algorithm.getImageHeightAnnotation()
OptionalTextAnnotationNameParameter	TileImage2DAlgorithm.getImageHeightAnnotation() Deprecated.
OptionalTextAnnotationNameParameter	UnTileImage2DAlgorithm.getImageHeightAnnotation()
OptionalTextAnnotationNameParameter	TileImage2Dv2Algorithm.getImageWidthAnnotation()
OptionalTextAnnotationNameParameter	TileImage2DAlgorithm.getImageWidthAnnotation() Deprecated.
OptionalTextAnnotationNameParameter	UnTileImage2DAlgorithm.getImageWidthAnnotation()
InterpolationMethod	TransformScale2DAlgorithm.getInterpolationMethod()
InterpolationMethod	TransformScale3DAlgorithm.getInterpolationMethod()
JIPipeExpressionParameter	AddBorder2DAlgorithm.getMarginBottom()
JIPipeExpressionParameter	AddBorder2DAlgorithm.getMarginLeft()
JIPipeExpressionParameter	AddBorder2DAlgorithm.getMarginRight()
JIPipeExpressionParameter	AddBorder2DAlgorithm.getMarginTop()
LineMirror.MirrorOperationMode	LineMirror2DFromExpressionsAlgorithm.getMode()
LineMirror.MirrorOperationMode	LineMirror2DFromRoiAlgorithm.getMode()
double	Warp2DAlgorithm.getMultiplier()
OptionalTextAnnotationNameParameter	TileImage2Dv2Algorithm.getNumTilesX()
OptionalTextAnnotationNameParameter	TileImage2DAlgorithm.getNumTilesX() Deprecated.
OptionalTextAnnotationNameParameter	TileImage2Dv2Algorithm.getNumTilesY()
OptionalTextAnnotationNameParameter	TileImage2DAlgorithm.getNumTilesY() Deprecated.
OptionalTextAnnotationNameParameter	TransformEqualizeDimensionsToMaxAlgorithm.getOriginalHeightAnnotation()
OptionalTextAnnotationNameParameter	TransformEqualizeDimensionsToMaxAlgorithm.getOriginalSizeCAnnotation()
OptionalTextAnnotationNameParameter	TransformEqualizeDimensionsToMaxAlgorithm.getOriginalSizeTAnnotation()
OptionalTextAnnotationNameParameter	TransformEqualizeDimensionsToMaxAlgorithm.getOriginalSizeZAnnotation()
OptionalTextAnnotationNameParameter	TransformEqualizeDimensionsToMaxAlgorithm.getOriginalWidthAnnotation()
JIPipeExpressionParameter	TileImage2Dv2Algorithm.getOverlapX()
int	TileImage2DAlgorithm.getOverlapX() Deprecated.
JIPipeExpressionParameter	TileImage2Dv2Algorithm.getOverlapY()
int	TileImage2DAlgorithm.getOverlapY() Deprecated.
Margin	TransformCrop2DAlgorithm.getRoi()
TransformRotate2DAlgorithm.RotationMode	TransformRotate2DAlgorithm.getRotationDirection()
int	TransformRotate2DAlgorithm.getRotations()
TransformScale2DAlgorithm	TransformEqualizeDimensionsAlgorithm.getScale2DAlgorithm()
TransformScale2DAlgorithm	TransformEqualizeDimensionsToMaxAlgorithm.getScale2DAlgorithm()
ScaleMode	TransformScale2DAlgorithm.getScaleMode()
ImageROITargetArea	MergeImagesAlgorithm.getTargetArea()
JIPipeExpressionParameter	TransformSetHyperstackDimensionsAlgorithm.gettAxis()
OptionalTextAnnotationNameParameter	TileImage2Dv2Algorithm.getTileInsetXAnnotation()
OptionalTextAnnotationNameParameter	TileImage2DAlgorithm.getTileInsetXAnnotation() Deprecated.
OptionalTextAnnotationNameParameter	UnTileImage2DAlgorithm.getTileInsetXAnnotation()
OptionalTextAnnotationNameParameter	TileImage2Dv2Algorithm.getTileInsetYAnnotation()
OptionalTextAnnotationNameParameter	TileImage2DAlgorithm.getTileInsetYAnnotation() Deprecated.
OptionalTextAnnotationNameParameter	UnTileImage2DAlgorithm.getTileInsetYAnnotation()
OptionalTextAnnotationNameParameter	TileImage2Dv2Algorithm.getTileRealXAnnotation()
OptionalTextAnnotationNameParameter	TileImage2DAlgorithm.getTileRealXAnnotation() Deprecated.
OptionalTextAnnotationNameParameter	UnTileImage2DAlgorithm.getTileRealXAnnotation()
OptionalTextAnnotationNameParameter	TileImage2Dv2Algorithm.getTileRealYAnnotation()
OptionalTextAnnotationNameParameter	TileImage2DAlgorithm.getTileRealYAnnotation() Deprecated.
OptionalTextAnnotationNameParameter	UnTileImage2DAlgorithm.getTileRealYAnnotation()
JIPipeExpressionParameter	TileImage2Dv2Algorithm.getTileSizeX()
int	TileImage2DAlgorithm.getTileSizeX() Deprecated.
JIPipeExpressionParameter	TileImage2Dv2Algorithm.getTileSizeY()
int	TileImage2DAlgorithm.getTileSizeY() Deprecated.
OptionalTextAnnotationNameParameter	TileImage2Dv2Algorithm.getTileXAnnotation()
OptionalTextAnnotationNameParameter	TileImage2DAlgorithm.getTileXAnnotation() Deprecated.
OptionalTextAnnotationNameParameter	TileImage2Dv2Algorithm.getTileYAnnotation()
OptionalTextAnnotationNameParameter	TileImage2DAlgorithm.getTileYAnnotation() Deprecated.
HyperstackDimension	Warp2DAlgorithm.getVectorDimension()
WrapMode	Warp2DAlgorithm.getWrapMode()
JIPipeExpressionParameter	LineMirror2DFromExpressionsAlgorithm.getX1()
JIPipeExpressionParameter	LineMirror2DFromExpressionsAlgorithm.getX2()
JIPipeExpressionParameter	CanvasEqualizer.getxAxis()
OptionalJIPipeExpressionParameter	TransformScale2DAlgorithm.getxAxis()
NumericFunctionExpression	TransformExpandCanvas2DAlgorithm.getxAxis()
OptionalJIPipeExpressionParameter	TransformScale3DAlgorithm.getxAxis()
NumericFunctionExpression	TransformEqualCanvasSize2DAlgorithm.getxAxis()
JIPipeExpressionParameter	LineMirror2DFromExpressionsAlgorithm.getY1()
JIPipeExpressionParameter	LineMirror2DFromExpressionsAlgorithm.getY2()
JIPipeExpressionParameter	CanvasEqualizer.getyAxis()
OptionalJIPipeExpressionParameter	TransformScale2DAlgorithm.getyAxis()
NumericFunctionExpression	TransformExpandCanvas2DAlgorithm.getyAxis()
OptionalJIPipeExpressionParameter	TransformScale3DAlgorithm.getyAxis()
NumericFunctionExpression	TransformEqualCanvasSize2DAlgorithm.getyAxis()
JIPipeExpressionParameter	TransformSetHyperstackDimensionsAlgorithm.getzAxis()
OptionalJIPipeExpressionParameter	TransformScale3DAlgorithm.getzAxis()
boolean	Warp2DAlgorithm.isAbsoluteCoordinates()
boolean	TransformScale2DAlgorithm.isAvoidUnnecessaryScaling()
boolean	TransformSetHyperstackDimensionsAlgorithm.isCopySlices()
boolean	TransformEqualizeDimensionsAlgorithm.isCopySlices()
boolean	TransformEqualizeDimensionsToMaxAlgorithm.isCopySlices()
boolean	TransformEqualizeDimensionsAlgorithm.isEqualHyperstackDimensions()
boolean	TransformEqualizeDimensionsToMaxAlgorithm.isEqualHyperstackDimensions()
boolean	TransformEqualizeDimensionsAlgorithm.isEqualWidthAndHeight()
boolean	TransformEqualizeDimensionsToMaxAlgorithm.isEqualWidthAndHeight()
boolean	TransformRotateFree2DAlgorithm.isExpandCanvas()
boolean	Warp2DAlgorithm.isInvertTransform()
boolean	TransformRotateFree2DAlgorithm.isOutputRoi()
boolean	Warp2DAlgorithm.isPolarCoordinates()
boolean	TransformEqualizeDimensionsToMaxAlgorithm.isRestoreOriginalAnnotations()
void	Warp2DAlgorithm.setAbsoluteCoordinates(boolean absoluteCoordinates)
void	CanvasEqualizer.setAnchor(Anchor anchor)
void	TransformRotateFree2DAlgorithm.setAnchor(Anchor anchor)
void	TransformScale2DAlgorithm.setAnchor(Anchor anchor)
void	TransformExpandCanvas2DAlgorithm.setAnchor(Anchor anchor)
void	TransformEqualCanvasSize2DAlgorithm.setAnchor(Anchor anchor)
void	TransformRotateFree2DAlgorithm.setAngle(double angle)
void	LineMirror2DFromRoiAlgorithm.setAnnotateWithRoiIndex(OptionalTextAnnotationNameParameter annotateWithRoiIndex)
void	LineMirror2DFromRoiAlgorithm.setAnnotateWithRoiName(OptionalTextAnnotationNameParameter annotateWithRoiName)
void	TransformCrop2DAlgorithm.setAnnotationBoundingHeight(OptionalTextAnnotationNameParameter annotationBoundingHeight)
void	TransformCrop2DAlgorithm.setAnnotationBoundingWidth(OptionalTextAnnotationNameParameter annotationBoundingWidth)
void	TileImage2Dv2Algorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	TileImage2DAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy) Deprecated.
void	TransformCrop2DAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	TransformCrop2DAlgorithm.setAnnotationX(OptionalTextAnnotationNameParameter annotationX)
void	TransformCrop2DAlgorithm.setAnnotationY(OptionalTextAnnotationNameParameter annotationY)
void	TransformScale2DAlgorithm.setAvoidUnnecessaryScaling(boolean avoidUnnecessaryScaling)
void	TransformScale2DAlgorithm.setBackground(Color background)
void	CanvasEqualizer.setBackgroundColor(Color backgroundColor)
void	TransformRotateFree2DAlgorithm.setBackgroundColor(Color backgroundColor)
void	TransformExpandCanvas2DAlgorithm.setBackgroundColor(Color backgroundColor)
void	TransformEqualCanvasSize2DAlgorithm.setBackgroundColor(Color backgroundColor)
void	AddBorder2DAlgorithm.setBorderColor(JIPipeExpressionParameter borderColor)
void	TileImage2Dv2Algorithm.setBorderMode(BorderMode borderMode)
void	TileImage2DAlgorithm.setBorderMode(BorderMode borderMode) Deprecated.
void	AddBorder2DAlgorithm.setBorderMode(BorderMode borderMode)
void	TransformSetHyperstackDimensionsAlgorithm.setcAxis(JIPipeExpressionParameter cAxis)
void	TransformSetHyperstackDimensionsAlgorithm.setCopySlices(boolean copySlices)
void	TransformEqualizeDimensionsAlgorithm.setCopySlices(boolean copySlices)
void	TransformEqualizeDimensionsToMaxAlgorithm.setCopySlices(boolean copySlices)
void	TransformEqualizeDimensionsAlgorithm.setEqualHyperstackDimensions(boolean equalHyperstackDimensions)
void	TransformEqualizeDimensionsToMaxAlgorithm.setEqualHyperstackDimensions(boolean equalHyperstackDimensions)
void	TransformEqualizeDimensionsAlgorithm.setEqualWidthAndHeight(boolean equalWidthAndHeight)
void	TransformEqualizeDimensionsToMaxAlgorithm.setEqualWidthAndHeight(boolean equalWidthAndHeight)
void	TransformRotateFree2DAlgorithm.setExpandCanvas(boolean expandCanvas)
void	TransformFlip2DAlgorithm.setFlipMode(TransformFlip2DAlgorithm.FlipMode flipMode)
void	TileImage2Dv2Algorithm.setImageHeightAnnotation(OptionalTextAnnotationNameParameter imageHeightAnnotation)
void	TileImage2DAlgorithm.setImageHeightAnnotation(OptionalTextAnnotationNameParameter imageHeightAnnotation) Deprecated.
void	UnTileImage2DAlgorithm.setImageHeightAnnotation(OptionalTextAnnotationNameParameter imageHeightAnnotation)
void	TileImage2Dv2Algorithm.setImageWidthAnnotation(OptionalTextAnnotationNameParameter imageWidthAnnotation)
void	TileImage2DAlgorithm.setImageWidthAnnotation(OptionalTextAnnotationNameParameter imageWidthAnnotation) Deprecated.
void	UnTileImage2DAlgorithm.setImageWidthAnnotation(OptionalTextAnnotationNameParameter imageWidthAnnotation)
void	TransformScale2DAlgorithm.setInterpolationMethod(InterpolationMethod interpolationMethod)
void	TransformScale3DAlgorithm.setInterpolationMethod(InterpolationMethod interpolationMethod)
void	Warp2DAlgorithm.setInvertTransform(boolean invertTransform)
void	AddBorder2DAlgorithm.setMarginBottom(JIPipeExpressionParameter marginBottom)
void	AddBorder2DAlgorithm.setMarginLeft(JIPipeExpressionParameter marginLeft)
void	AddBorder2DAlgorithm.setMarginRight(JIPipeExpressionParameter marginRight)
void	AddBorder2DAlgorithm.setMarginTop(JIPipeExpressionParameter marginTop)
void	LineMirror2DFromExpressionsAlgorithm.setMode(LineMirror.MirrorOperationMode mode)
void	LineMirror2DFromRoiAlgorithm.setMode(LineMirror.MirrorOperationMode mode)
void	Warp2DAlgorithm.setMultiplier(double multiplier)
void	TileImage2Dv2Algorithm.setNumTilesX(OptionalTextAnnotationNameParameter numTilesX)
void	TileImage2DAlgorithm.setNumTilesX(OptionalTextAnnotationNameParameter numTilesX) Deprecated.
void	TileImage2Dv2Algorithm.setNumTilesY(OptionalTextAnnotationNameParameter numTilesY)
void	TileImage2DAlgorithm.setNumTilesY(OptionalTextAnnotationNameParameter numTilesY) Deprecated.
void	TransformEqualizeDimensionsToMaxAlgorithm.setOriginalHeightAnnotation(OptionalTextAnnotationNameParameter originalHeightAnnotation)
void	TransformEqualizeDimensionsToMaxAlgorithm.setOriginalSizeCAnnotation(OptionalTextAnnotationNameParameter originalSizeCAnnotation)
void	TransformEqualizeDimensionsToMaxAlgorithm.setOriginalSizeTAnnotation(OptionalTextAnnotationNameParameter originalSizeTAnnotation)
void	TransformEqualizeDimensionsToMaxAlgorithm.setOriginalSizeZAnnotation(OptionalTextAnnotationNameParameter originalSizeZAnnotation)
void	TransformEqualizeDimensionsToMaxAlgorithm.setOriginalWidthAnnotation(OptionalTextAnnotationNameParameter originalWidthAnnotation)
void	TransformRotateFree2DAlgorithm.setOutputRoi(boolean outputRoi)
boolean	TileImage2DAlgorithm.setOverlapX(int overlapX) Deprecated.
void	TileImage2Dv2Algorithm.setOverlapX(JIPipeExpressionParameter overlapX)
void	TileImage2DAlgorithm.setOverlapY(int overlapY) Deprecated.
void	TileImage2Dv2Algorithm.setOverlapY(JIPipeExpressionParameter overlapY)
void	Warp2DAlgorithm.setPolarCoordinates(boolean polarCoordinates)
void	TransformEqualizeDimensionsToMaxAlgorithm.setRestoreOriginalAnnotations(boolean restoreOriginalAnnotations)
void	TransformCrop2DAlgorithm.setRoi(Margin roi)
void	TransformRotate2DAlgorithm.setRotationDirection(TransformRotate2DAlgorithm.RotationMode rotationDirection)
void	TransformRotate2DAlgorithm.setRotations(int rotations)
void	TransformScale2DAlgorithm.setScaleMode(ScaleMode scaleMode)
void	MergeImagesAlgorithm.setTargetArea(ImageROITargetArea targetArea)
void	TransformSetHyperstackDimensionsAlgorithm.settAxis(JIPipeExpressionParameter tAxis)
void	TileImage2Dv2Algorithm.setTileInsetXAnnotation(OptionalTextAnnotationNameParameter tileInsetXAnnotation)
void	TileImage2DAlgorithm.setTileInsetXAnnotation(OptionalTextAnnotationNameParameter tileInsetXAnnotation) Deprecated.
void	UnTileImage2DAlgorithm.setTileInsetXAnnotation(OptionalTextAnnotationNameParameter tileInsetXAnnotation)
void	TileImage2Dv2Algorithm.setTileInsetYAnnotation(OptionalTextAnnotationNameParameter tileInsetYAnnotation)
void	TileImage2DAlgorithm.setTileInsetYAnnotation(OptionalTextAnnotationNameParameter tileInsetYAnnotation) Deprecated.
void	UnTileImage2DAlgorithm.setTileInsetYAnnotation(OptionalTextAnnotationNameParameter tileInsetYAnnotation)
void	TileImage2Dv2Algorithm.setTileRealXAnnotation(OptionalTextAnnotationNameParameter tileRealXAnnotation)
void	TileImage2DAlgorithm.setTileRealXAnnotation(OptionalTextAnnotationNameParameter tileRealXAnnotation) Deprecated.
void	UnTileImage2DAlgorithm.setTileRealXAnnotation(OptionalTextAnnotationNameParameter tileRealXAnnotation)
void	TileImage2Dv2Algorithm.setTileRealYAnnotation(OptionalTextAnnotationNameParameter tileRealYAnnotation)
void	TileImage2DAlgorithm.setTileRealYAnnotation(OptionalTextAnnotationNameParameter tileRealYAnnotation) Deprecated.
void	UnTileImage2DAlgorithm.setTileRealYAnnotation(OptionalTextAnnotationNameParameter tileRealYAnnotation)
void	TileImage2DAlgorithm.setTileSizeX(int tileSizeX) Deprecated.
void	TileImage2Dv2Algorithm.setTileSizeX(JIPipeExpressionParameter tileSizeX)
void	TileImage2DAlgorithm.setTileSizeY(int tileSizeY) Deprecated.
void	TileImage2Dv2Algorithm.setTileSizeY(JIPipeExpressionParameter tileSizeY)
void	TileImage2Dv2Algorithm.setTileXAnnotation(OptionalTextAnnotationNameParameter tileXAnnotation)
void	TileImage2DAlgorithm.setTileXAnnotation(OptionalTextAnnotationNameParameter tileXAnnotation) Deprecated.
void	TileImage2Dv2Algorithm.setTileYAnnotation(OptionalTextAnnotationNameParameter tileYAnnotation)
void	TileImage2DAlgorithm.setTileYAnnotation(OptionalTextAnnotationNameParameter tileYAnnotation) Deprecated.
void	Warp2DAlgorithm.setVectorDimension(HyperstackDimension vectorDimension)
void	Warp2DAlgorithm.setWrapMode(WrapMode wrapMode)
void	LineMirror2DFromExpressionsAlgorithm.setX1(JIPipeExpressionParameter x1)
void	LineMirror2DFromExpressionsAlgorithm.setX2(JIPipeExpressionParameter x2)
void	CanvasEqualizer.setxAxis(JIPipeExpressionParameter xAxis)
void	TransformExpandCanvas2DAlgorithm.setxAxis(NumericFunctionExpression xAxis)
void	TransformEqualCanvasSize2DAlgorithm.setxAxis(NumericFunctionExpression xAxis)
void	TransformScale2DAlgorithm.setxAxis(OptionalJIPipeExpressionParameter xAxis)
void	TransformScale3DAlgorithm.setxAxis(OptionalJIPipeExpressionParameter xAxis)
void	LineMirror2DFromExpressionsAlgorithm.setY1(JIPipeExpressionParameter y1)
void	LineMirror2DFromExpressionsAlgorithm.setY2(JIPipeExpressionParameter y2)
void	CanvasEqualizer.setyAxis(JIPipeExpressionParameter yAxis)
void	TransformExpandCanvas2DAlgorithm.setyAxis(NumericFunctionExpression yAxis)
void	TransformEqualCanvasSize2DAlgorithm.setyAxis(NumericFunctionExpression yAxis)
void	TransformScale2DAlgorithm.setyAxis(OptionalJIPipeExpressionParameter yAxis)
void	TransformScale3DAlgorithm.setyAxis(OptionalJIPipeExpressionParameter yAxis)
void	TransformSetHyperstackDimensionsAlgorithm.setzAxis(JIPipeExpressionParameter zAxis)
void	TransformScale3DAlgorithm.setzAxis(OptionalJIPipeExpressionParameter zAxis)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejalgorithms.utils

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.utils with annotations of type JIPipeParameter

Modifier and Type	Method and Description
Color	MontageCreator.CanvasParameters.getBorderColor()
int	MontageCreator.CanvasParameters.getBorderSize()
Anchor	MontageCreator.CanvasParameters.getCanvasAnchor()
Color	MontageCreator.CanvasParameters.getCanvasBackgroundColor()
MontageCreator.CanvasParameters	MontageCreator.getCanvasParameters()
OptionalIntegerParameter	MontageCreator.getForceNumColumns()
OptionalIntegerParameter	MontageCreator.getForceNumRows()
OrientationJGradientOperator	OrientationJStructureTensorParameters.getGradient()
MontageCreator.ImageParameters	MontageCreator.getImageParameters()
InterpolationMethod	MontageCreator.ImageParameters.getInterpolationMethod()
OptionalColorParameter	MontageCreator.LabelParameters.getLabelBackground()
JIPipeExpressionParameter	MontageCreator.getLabelExpression()
FontFamilyParameter	MontageCreator.LabelParameters.getLabelFontFamily()
Color	MontageCreator.LabelParameters.getLabelForeground()
Anchor	MontageCreator.LabelParameters.getLabelLocation()
MontageCreator.LabelParameters	MontageCreator.getLabelParameters()
int	MontageCreator.LabelParameters.getLabelSize()
int	OrientationJStructureTensorParameters.getLocalWindowSigma()
ScaleMode	MontageCreator.ImageParameters.getScaleMode()
OptionalJIPipeExpressionParameter	MontageCreator.getSortingLabelExpression()
ImageROITargetArea	SimpleImageAndRoiIteratingAlgorithm.getTargetArea()
JIPipeExpressionParameter	MontageCreator.getTileHeight()
JIPipeExpressionParameter	MontageCreator.getTileWidth()
boolean	MontageCreator.LabelParameters.isAvoidLabelOnImage()
boolean	MontageCreator.ImageParameters.isAvoidScaling()
boolean	MontageCreator.LabelParameters.isDrawLabel()
boolean	MontageCreator.isForceRGB()
boolean	MontageCreator.LabelParameters.isLimitWithEllipsis()
boolean	MontageCreator.isRgbUseRender()
void	MontageCreator.LabelParameters.setAvoidLabelOnImage(boolean avoidLabelOnImage)
void	MontageCreator.ImageParameters.setAvoidScaling(boolean avoidScaling)
void	MontageCreator.CanvasParameters.setBorderColor(Color borderColor)
void	MontageCreator.CanvasParameters.setBorderSize(int borderSize)
void	MontageCreator.CanvasParameters.setCanvasAnchor(Anchor canvasAnchor)
void	MontageCreator.CanvasParameters.setCanvasBackgroundColor(Color canvasBackgroundColor)
void	MontageCreator.LabelParameters.setDrawLabel(boolean drawLabel)
void	MontageCreator.setForceNumColumns(OptionalIntegerParameter forceNumColumns)
void	MontageCreator.setForceNumRows(OptionalIntegerParameter forceNumRows)
void	MontageCreator.setForceRGB(boolean forceRGB)
void	OrientationJStructureTensorParameters.setGradient(OrientationJGradientOperator gradient)
void	MontageCreator.ImageParameters.setInterpolationMethod(InterpolationMethod interpolationMethod)
void	MontageCreator.LabelParameters.setLabelBackground(OptionalColorParameter labelBackground)
void	MontageCreator.setLabelExpression(JIPipeExpressionParameter labelExpression)
void	MontageCreator.LabelParameters.setLabelFontFamily(FontFamilyParameter labelFontFamily)
void	MontageCreator.LabelParameters.setLabelForeground(Color labelForeground)
void	MontageCreator.LabelParameters.setLabelLocation(Anchor labelLocation)
void	MontageCreator.LabelParameters.setLabelSize(int labelSize)
void	MontageCreator.LabelParameters.setLimitWithEllipsis(boolean limitWithEllipsis)
void	OrientationJStructureTensorParameters.setLocalWindowSigma(int localWindowSigma)
void	MontageCreator.setRgbUseRender(boolean rgbUseRender)
void	MontageCreator.ImageParameters.setScaleMode(ScaleMode scaleMode)
void	MontageCreator.setSortingLabelExpression(OptionalJIPipeExpressionParameter sortingLabelExpression)
void	SimpleImageAndRoiIteratingAlgorithm.setTargetArea(ImageROITargetArea targetArea)
void	MontageCreator.setTileHeight(JIPipeExpressionParameter tileHeight)
void	MontageCreator.setTileWidth(JIPipeExpressionParameter tileWidth)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejdatatypes

Methods in org.hkijena.jipipe.plugins.imagejdatatypes with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OMETIFFCompression	ImageJDataTypesApplicationSettings.getBioFormatsCompression()
boolean	ImageJDataTypesApplicationSettings.isSaveRGBWithImageJ()
boolean	ImageJDataTypesApplicationSettings.isUseBioFormats()
void	ImageJDataTypesApplicationSettings.setBioFormatsCompression(OMETIFFCompression bioFormatsCompression)
void	ImageJDataTypesApplicationSettings.setSaveRGBWithImageJ(boolean saveRGBWithImageJ)
void	ImageJDataTypesApplicationSettings.setUseBioFormats(boolean useBioFormats)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejdatatypes.algorithms

Methods in org.hkijena.jipipe.plugins.imagejdatatypes.algorithms with annotations of type JIPipeParameter

Modifier and Type	Method and Description
ImageJCalibrationMode	DisplayRangeCalibrationAlgorithm.getCalibrationMode()
double	DisplayRangeCalibrationAlgorithm.getCustomMax()
double	DisplayRangeCalibrationAlgorithm.getCustomMin()
OMEExporterSettings	SetBioFormatsExporterSettings.getExporterSettings()
void	DisplayRangeCalibrationAlgorithm.setCalibrationMode(ImageJCalibrationMode calibrationMode)
void	DisplayRangeCalibrationAlgorithm.setCustomMax(double customMax)
void	DisplayRangeCalibrationAlgorithm.setCustomMin(double customMin)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.annotate

Methods in org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.annotate with annotations of type JIPipeParameter

Modifier and Type	Method and Description
BioFormatsAnnotatorAlgorithm.BioFormatsSettings	BioFormatsAnnotatorAlgorithm.getBioFormatsSettings()
OptionalTextAnnotationNameParameter	ImagePropertiesToAnnotationAlgorithm.getBitDepthAnnotation()
OptionalTextAnnotationNameParameter	AnnotateDataWithImagePropertiesAlgorithm.getBitDepthAnnotation()
OptionalTextAnnotationNameParameter	ImagePropertiesToAnnotationAlgorithm.getChannelSizeAnnotation()
OptionalTextAnnotationNameParameter	AnnotateDataWithImagePropertiesAlgorithm.getChannelSizeAnnotation()
OMEColorMode	BioFormatsAnnotatorAlgorithm.BioFormatsSettings.getColorMode()
OptionalTextAnnotationNameParameter	ImagePropertiesToAnnotationAlgorithm.getColorSpaceAnnotation()
OptionalTextAnnotationNameParameter	AnnotateDataWithImagePropertiesAlgorithm.getColorSpaceAnnotation()
OptionalTextAnnotationNameParameter	ImagePropertiesToAnnotationAlgorithm.getFramesSizeAnnotation()
OptionalTextAnnotationNameParameter	AnnotateDataWithImagePropertiesAlgorithm.getFramesSizeAnnotation()
OptionalTextAnnotationNameParameter	ImagePropertiesToAnnotationAlgorithm.getHeightAnnotation()
OptionalTextAnnotationNameParameter	AnnotateDataWithImagePropertiesAlgorithm.getHeightAnnotation()
OptionalTextAnnotationNameParameter	ImagePropertiesToAnnotationAlgorithm.getImageTypeAnnotation()
OptionalTextAnnotationNameParameter	AnnotateDataWithImagePropertiesAlgorithm.getImageTypeAnnotation()
OptionalTextAnnotationNameParameter	BioFormatsAnnotatorAlgorithm.getMaxSeriesIdAnnotation()
OptionalDataAnnotationNameParameter	BioFormatsAnnotatorAlgorithm.getOmeXMLDataAnnotation()
OptionalTextAnnotationNameParameter	ImagePropertiesToAnnotationAlgorithm.getPhysicalDimensionTAnnotation()
OptionalTextAnnotationNameParameter	AnnotateDataWithImagePropertiesAlgorithm.getPhysicalDimensionTAnnotation()
OptionalTextAnnotationNameParameter	ImagePropertiesToAnnotationAlgorithm.getPhysicalDimensionValueAnnotation()
OptionalTextAnnotationNameParameter	AnnotateDataWithImagePropertiesAlgorithm.getPhysicalDimensionValueAnnotation()
OptionalTextAnnotationNameParameter	ImagePropertiesToAnnotationAlgorithm.getPhysicalDimensionXAnnotation()
OptionalTextAnnotationNameParameter	AnnotateDataWithImagePropertiesAlgorithm.getPhysicalDimensionXAnnotation()
OptionalTextAnnotationNameParameter	ImagePropertiesToAnnotationAlgorithm.getPhysicalDimensionYAnnotation()
OptionalTextAnnotationNameParameter	AnnotateDataWithImagePropertiesAlgorithm.getPhysicalDimensionYAnnotation()
OptionalTextAnnotationNameParameter	ImagePropertiesToAnnotationAlgorithm.getPhysicalDimensionZAnnotation()
OptionalTextAnnotationNameParameter	AnnotateDataWithImagePropertiesAlgorithm.getPhysicalDimensionZAnnotation()
OptionalTextAnnotationNameParameter	ImagePropertiesToAnnotationAlgorithm.getPlaneNumberAnnotation()
OptionalTextAnnotationNameParameter	AnnotateDataWithImagePropertiesAlgorithm.getPlaneNumberAnnotation()
OptionalTextAnnotationNameParameter	BioFormatsAnnotatorAlgorithm.getSeriesIdsAnnotation()
OptionalTextAnnotationNameParameter	BioFormatsAnnotatorAlgorithm.getSeriesNamesAnnotation()
ome.xml.model.enums.DimensionOrder	BioFormatsAnnotatorAlgorithm.BioFormatsSettings.getStackOrder()
OptionalTextAnnotationNameParameter	ImagePropertiesToAnnotationAlgorithm.getStackSizeAnnotation()
OptionalTextAnnotationNameParameter	AnnotateDataWithImagePropertiesAlgorithm.getStackSizeAnnotation()
OptionalTextAnnotationNameParameter	ImagePropertiesToAnnotationAlgorithm.getTitleAnnotation()
OptionalTextAnnotationNameParameter	AnnotateDataWithImagePropertiesAlgorithm.getTitleAnnotation()
OptionalTextAnnotationNameParameter	ImagePropertiesToAnnotationAlgorithm.getWidthAnnotation()
OptionalTextAnnotationNameParameter	AnnotateDataWithImagePropertiesAlgorithm.getWidthAnnotation()
boolean	BioFormatsAnnotatorAlgorithm.BioFormatsSettings.isAutoScale()
boolean	BioFormatsAnnotatorAlgorithm.BioFormatsSettings.isConcatenate()
boolean	BioFormatsAnnotatorAlgorithm.BioFormatsSettings.isCrop()
boolean	BioFormatsAnnotatorAlgorithm.BioFormatsSettings.isSplitChannels()
boolean	BioFormatsAnnotatorAlgorithm.BioFormatsSettings.isSplitFocalPlanes()
boolean	BioFormatsAnnotatorAlgorithm.BioFormatsSettings.isSplitTimePoints()
boolean	BioFormatsAnnotatorAlgorithm.BioFormatsSettings.isStitchTiles()
boolean	BioFormatsAnnotatorAlgorithm.BioFormatsSettings.isSwapDimensions()
void	BioFormatsAnnotatorAlgorithm.BioFormatsSettings.setAutoScale(boolean autoScale)
void	ImagePropertiesToAnnotationAlgorithm.setBitDepthAnnotation(OptionalTextAnnotationNameParameter bitDepthAnnotation)
void	AnnotateDataWithImagePropertiesAlgorithm.setBitDepthAnnotation(OptionalTextAnnotationNameParameter bitDepthAnnotation)
void	ImagePropertiesToAnnotationAlgorithm.setChannelSizeAnnotation(OptionalTextAnnotationNameParameter channelSizeAnnotation)
void	AnnotateDataWithImagePropertiesAlgorithm.setChannelSizeAnnotation(OptionalTextAnnotationNameParameter channelSizeAnnotation)
void	BioFormatsAnnotatorAlgorithm.BioFormatsSettings.setColorMode(OMEColorMode colorMode)
void	ImagePropertiesToAnnotationAlgorithm.setColorSpaceAnnotation(OptionalTextAnnotationNameParameter colorSpaceAnnotation)
void	AnnotateDataWithImagePropertiesAlgorithm.setColorSpaceAnnotation(OptionalTextAnnotationNameParameter colorSpaceAnnotation)
void	BioFormatsAnnotatorAlgorithm.BioFormatsSettings.setConcatenate(boolean concatenate)
void	BioFormatsAnnotatorAlgorithm.BioFormatsSettings.setCrop(boolean crop)
void	ImagePropertiesToAnnotationAlgorithm.setFramesSizeAnnotation(OptionalTextAnnotationNameParameter framesSizeAnnotation)
void	AnnotateDataWithImagePropertiesAlgorithm.setFramesSizeAnnotation(OptionalTextAnnotationNameParameter framesSizeAnnotation)
void	ImagePropertiesToAnnotationAlgorithm.setHeightAnnotation(OptionalTextAnnotationNameParameter heightAnnotation)
void	AnnotateDataWithImagePropertiesAlgorithm.setHeightAnnotation(OptionalTextAnnotationNameParameter heightAnnotation)
void	ImagePropertiesToAnnotationAlgorithm.setImageTypeAnnotation(OptionalTextAnnotationNameParameter imageTypeAnnotation)
void	AnnotateDataWithImagePropertiesAlgorithm.setImageTypeAnnotation(OptionalTextAnnotationNameParameter imageTypeAnnotation)
void	BioFormatsAnnotatorAlgorithm.setMaxSeriesIdAnnotation(OptionalTextAnnotationNameParameter maxSeriesIdAnnotation)
void	BioFormatsAnnotatorAlgorithm.setOmeXMLDataAnnotation(OptionalDataAnnotationNameParameter omeXMLDataAnnotation)
void	ImagePropertiesToAnnotationAlgorithm.setPhysicalDimensionTAnnotation(OptionalTextAnnotationNameParameter physicalDimensionTAnnotation)
void	AnnotateDataWithImagePropertiesAlgorithm.setPhysicalDimensionTAnnotation(OptionalTextAnnotationNameParameter physicalDimensionTAnnotation)
void	ImagePropertiesToAnnotationAlgorithm.setPhysicalDimensionValueAnnotation(OptionalTextAnnotationNameParameter physicalDimensionValueAnnotation)
void	AnnotateDataWithImagePropertiesAlgorithm.setPhysicalDimensionValueAnnotation(OptionalTextAnnotationNameParameter physicalDimensionValueAnnotation)
void	ImagePropertiesToAnnotationAlgorithm.setPhysicalDimensionXAnnotation(OptionalTextAnnotationNameParameter physicalDimensionXAnnotation)
void	AnnotateDataWithImagePropertiesAlgorithm.setPhysicalDimensionXAnnotation(OptionalTextAnnotationNameParameter physicalDimensionXAnnotation)
void	ImagePropertiesToAnnotationAlgorithm.setPhysicalDimensionYAnnotation(OptionalTextAnnotationNameParameter physicalDimensionYAnnotation)
void	AnnotateDataWithImagePropertiesAlgorithm.setPhysicalDimensionYAnnotation(OptionalTextAnnotationNameParameter physicalDimensionYAnnotation)
void	ImagePropertiesToAnnotationAlgorithm.setPhysicalDimensionZAnnotation(OptionalTextAnnotationNameParameter physicalDimensionZAnnotation)
void	AnnotateDataWithImagePropertiesAlgorithm.setPhysicalDimensionZAnnotation(OptionalTextAnnotationNameParameter physicalDimensionZAnnotation)
void	ImagePropertiesToAnnotationAlgorithm.setPlaneNumberAnnotation(OptionalTextAnnotationNameParameter planeNumberAnnotation)
void	AnnotateDataWithImagePropertiesAlgorithm.setPlaneNumberAnnotation(OptionalTextAnnotationNameParameter planeNumberAnnotation)
void	BioFormatsAnnotatorAlgorithm.setSeriesIdsAnnotation(OptionalTextAnnotationNameParameter seriesIdsAnnotation)
void	BioFormatsAnnotatorAlgorithm.setSeriesNamesAnnotation(OptionalTextAnnotationNameParameter seriesNamesAnnotation)
void	BioFormatsAnnotatorAlgorithm.BioFormatsSettings.setSplitChannels(boolean splitChannels)
void	BioFormatsAnnotatorAlgorithm.BioFormatsSettings.setSplitFocalPlanes(boolean splitFocalPlanes)
void	BioFormatsAnnotatorAlgorithm.BioFormatsSettings.setSplitTimePoints(boolean splitTimePoints)
void	BioFormatsAnnotatorAlgorithm.BioFormatsSettings.setStackOrder(ome.xml.model.enums.DimensionOrder stackOrder)
void	ImagePropertiesToAnnotationAlgorithm.setStackSizeAnnotation(OptionalTextAnnotationNameParameter stackSizeAnnotation)
void	AnnotateDataWithImagePropertiesAlgorithm.setStackSizeAnnotation(OptionalTextAnnotationNameParameter stackSizeAnnotation)
void	BioFormatsAnnotatorAlgorithm.BioFormatsSettings.setStitchTiles(boolean stitchTiles)
void	BioFormatsAnnotatorAlgorithm.BioFormatsSettings.setSwapDimensions(boolean swapDimensions)
void	ImagePropertiesToAnnotationAlgorithm.setTitleAnnotation(OptionalTextAnnotationNameParameter titleAnnotation)
void	AnnotateDataWithImagePropertiesAlgorithm.setTitleAnnotation(OptionalTextAnnotationNameParameter titleAnnotation)
void	ImagePropertiesToAnnotationAlgorithm.setWidthAnnotation(OptionalTextAnnotationNameParameter widthAnnotation)
void	AnnotateDataWithImagePropertiesAlgorithm.setWidthAnnotation(OptionalTextAnnotationNameParameter widthAnnotation)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.color

Methods in org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.color with annotations of type JIPipeParameter

Modifier and Type	Method and Description
boolean	ColorSpaceConverterAlgorithm.isReinterpret()
void	ColorSpaceConverterAlgorithm.setReinterpret(boolean reinterpret)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.io

Methods in org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.io with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalJIPipeExpressionParameter	ExportImagePlusAsOMEZARRAlgorithm.getChunkSizeExpression()
OMEColorMode	BioFormatsImporterAlgorithm.getColorMode()
ExportImagePlusAsOMEZARRAlgorithm.Compression	ExportImagePlusAsOMEZARRAlgorithm.getCompression()
RectangleList	BioFormatsImporterAlgorithm.getCropRegions()
OptionalJIPipeExpressionParameter	ImportOMEZARRFromZipDirectoryAsImagePlusAlgorithm.getDatasetFilter()
OptionalJIPipeExpressionParameter	ImportOMEZARRFromURIAsImagePlusAlgorithm.getDatasetFilter()
OptionalTextAnnotationNameParameter	ImportOMEZARRFromZipDirectoryAsImagePlusAlgorithm.getDatasetNameAnnotation()
OptionalTextAnnotationNameParameter	ImportOMEZARRFromURIAsImagePlusAlgorithm.getDatasetNameAnnotation()
JIPipeDataByMetadataExporter	BioFormatsExporterAlgorithm.getExporter() Deprecated.
OMEExporterSettings	BioFormatsExporter2Algorithm.getExporterSettings()
OMEExporterSettings	BioFormatsExporterAlgorithm.getExporterSettings() Deprecated.
ImportResultsTableAlgorithm.FileFormat	ImportResultsTableAlgorithm.getFileFormat()
DataExportExpressionParameter	ExportImagePlusAsOMEZARRAlgorithm.getFilePath()
DataExportExpressionParameter	BioFormatsExporter2Algorithm.getFilePath()
JIPipeDataInfoRef	ImportImagePlusAlgorithm.getGeneratedImageType()
Path	BioFormatsExporterAlgorithm.getOutputDirectory() Deprecated.
ExportImagePlusAsOMEZARRAlgorithm.OutputFormat	ExportImagePlusAsOMEZARRAlgorithm.getOutputFormat()
ImportImageJSampleAlgorithm.Sample	ImportImageJSampleAlgorithm.getSample()
OptionalTextAnnotationNameParameter	BioFormatsImporterAlgorithm.getSeriesAnnotation()
IntegerList	BioFormatsImporterAlgorithm.getSeriesToImport()
OptionalTextAnnotationNameParameter	ImportResultsTableAlgorithm.getSheetNameAnnotation()
StringList	ImportResultsTableAlgorithm.getSheets()
ome.xml.model.enums.DimensionOrder	BioFormatsImporterAlgorithm.getStackOrder()
OptionalTextAnnotationNameParameter	BioFormatsImporterAlgorithm.getTitleAnnotation()
OptionalTextAnnotationNameParameter	ImportImagePlusAlgorithm.getTitleAnnotation()
boolean	BioFormatsImporterAlgorithm.isAutoScale()
boolean	BioFormatsImporterAlgorithm.isConcatenate()
boolean	ExportImagePlusAsOMEZARRAlgorithm.isCreatePyramid()
boolean	BioFormatsImporterAlgorithm.isCrop()
boolean	BioFormatsImporterAlgorithm.isExtractRois()
boolean	ImportImagePlusAlgorithm.isForceNativeImport()
boolean	ImportResultsTableAlgorithm.isIgnoreMissingSheets()
boolean	BioFormatsImporterAlgorithm.isOpenAllSeries()
boolean	ImportImagePlusAlgorithm.isRemoveLut()
boolean	ImportImagePlusAlgorithm.isRemoveOverlay()
boolean	BioFormatsImporterAlgorithm.isSplitChannels()
boolean	BioFormatsImporterAlgorithm.isSplitFocalPlanes()
boolean	BioFormatsImporterAlgorithm.isSplitTimePoints()
boolean	BioFormatsImporterAlgorithm.isStitchTiles()
boolean	BioFormatsImporterAlgorithm.isSwapDimensions()
void	BioFormatsImporterAlgorithm.setAutoScale(boolean autoScale)
void	ExportImagePlusAsOMEZARRAlgorithm.setChunkSizeExpression(OptionalJIPipeExpressionParameter chunkSizeExpression)
void	BioFormatsImporterAlgorithm.setColorMode(OMEColorMode colorMode)
void	ExportImagePlusAsOMEZARRAlgorithm.setCompression(ExportImagePlusAsOMEZARRAlgorithm.Compression compression)
void	BioFormatsImporterAlgorithm.setConcatenate(boolean concatenate)
void	ExportImagePlusAsOMEZARRAlgorithm.setCreatePyramid(boolean createPyramid)
void	BioFormatsImporterAlgorithm.setCrop(boolean crop)
void	BioFormatsImporterAlgorithm.setCropRegions(RectangleList cropRegions)
void	ImportOMEZARRFromZipDirectoryAsImagePlusAlgorithm.setDatasetFilter(OptionalJIPipeExpressionParameter datasetFilter)
void	ImportOMEZARRFromURIAsImagePlusAlgorithm.setDatasetFilter(OptionalJIPipeExpressionParameter datasetFilter)
void	ImportOMEZARRFromZipDirectoryAsImagePlusAlgorithm.setDatasetNameAnnotation(OptionalTextAnnotationNameParameter datasetNameAnnotation)
void	ImportOMEZARRFromURIAsImagePlusAlgorithm.setDatasetNameAnnotation(OptionalTextAnnotationNameParameter datasetNameAnnotation)
void	BioFormatsImporterAlgorithm.setExtractRois(boolean extractRois)
void	ImportResultsTableAlgorithm.setFileFormat(ImportResultsTableAlgorithm.FileFormat fileFormat)
void	ExportImagePlusAsOMEZARRAlgorithm.setFilePath(DataExportExpressionParameter filePath)
void	BioFormatsExporter2Algorithm.setFilePath(DataExportExpressionParameter filePath)
void	ImportImagePlusAlgorithm.setForceNativeImport(boolean forceNativeImport)
void	ImportImagePlusAlgorithm.setGeneratedImageType(JIPipeDataInfoRef generatedImageType)
void	ImportResultsTableAlgorithm.setIgnoreMissingSheets(boolean ignoreMissingSheets)
void	BioFormatsImporterAlgorithm.setOpenAllSeries(boolean openAllSeries)
void	BioFormatsExporterAlgorithm.setOutputDirectory(Path outputDirectory) Deprecated.
void	ExportImagePlusAsOMEZARRAlgorithm.setOutputFormat(ExportImagePlusAsOMEZARRAlgorithm.OutputFormat outputFormat)
void	ImportImagePlusAlgorithm.setRemoveLut(boolean removeLut)
void	ImportImagePlusAlgorithm.setRemoveOverlay(boolean removeOverlay)
void	ImportImageJSampleAlgorithm.setSample(ImportImageJSampleAlgorithm.Sample sample)
void	BioFormatsImporterAlgorithm.setSeriesAnnotation(OptionalTextAnnotationNameParameter seriesAnnotation)
void	BioFormatsImporterAlgorithm.setSeriesToImport(IntegerList seriesToImport)
void	ImportResultsTableAlgorithm.setSheetNameAnnotation(OptionalTextAnnotationNameParameter sheetNameAnnotation)
void	ImportResultsTableAlgorithm.setSheets(StringList sheets)
void	BioFormatsImporterAlgorithm.setSplitChannels(boolean splitChannels)
void	BioFormatsImporterAlgorithm.setSplitFocalPlanes(boolean splitFocalPlanes)
void	BioFormatsImporterAlgorithm.setSplitTimePoints(boolean splitTimePoints)
void	BioFormatsImporterAlgorithm.setStackOrder(ome.xml.model.enums.DimensionOrder stackOrder)
void	BioFormatsImporterAlgorithm.setStitchTiles(boolean stitchTiles)
void	BioFormatsImporterAlgorithm.setSwapDimensions(boolean swapDimensions)
void	BioFormatsImporterAlgorithm.setTitleAnnotation(OptionalTextAnnotationNameParameter titleAnnotation)
void	ImportImagePlusAlgorithm.setTitleAnnotation(OptionalTextAnnotationNameParameter titleAnnotation)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejdatatypes.converters

Methods in org.hkijena.jipipe.plugins.imagejdatatypes.converters with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeDataInfoRef	ImageTypeConverter.getOutputType()
void	ImageTypeConverter.setOutputType(JIPipeDataInfoRef outputType)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejdatatypes.parameters

Methods in org.hkijena.jipipe.plugins.imagejdatatypes.parameters with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OMETIFFCompression	OMEExporterSettings.getCompression()
ome.xml.model.enums.DimensionOrder	OMEExporterSettings.getDimensionOrder()
boolean	OMEExporterSettings.isNoLUT()
boolean	OMEExporterSettings.isPadded()
boolean	OMEExporterSettings.isSaveROI()
boolean	OMEExporterSettings.isSplitC()
boolean	OMEExporterSettings.isSplitT()
boolean	OMEExporterSettings.isSplitZ()
void	OMEExporterSettings.setCompression(OMETIFFCompression compression)
void	OMEExporterSettings.setDimensionOrder(ome.xml.model.enums.DimensionOrder dimensionOrder)
void	OMEExporterSettings.setNoLUT(boolean noLUT)
void	OMEExporterSettings.setPadded(boolean padded)
void	OMEExporterSettings.setSaveROI(boolean saveROI)
void	OMEExporterSettings.setSplitC(boolean splitC)
void	OMEExporterSettings.setSplitT(boolean splitT)
void	OMEExporterSettings.setSplitZ(boolean splitZ)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejdatatypes.settings

Methods in org.hkijena.jipipe.plugins.imagejdatatypes.settings with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalJIPipeDataDirectoryEnvironment	ImageSamplesApplicationSettings.getDefaultEnvironment()
OptionalJIPipeDataDirectoryEnvironment	ImageSamplesProjectSettings.getProjectDefaultEnvironment()
RoiDrawer	ImageViewerUIROI2DDisplayApplicationSettings.getRoiDrawer()
boolean	ImageViewerUIROI2DDisplayApplicationSettings.isRenderROIAsOverlay()
boolean	ImageViewerUIROI2DDisplayApplicationSettings.isShowROI()
void	ImageSamplesApplicationSettings.setDefaultEnvironment(OptionalJIPipeDataDirectoryEnvironment defaultEnvironment)
void	ImageSamplesProjectSettings.setProjectDefaultEnvironment(OptionalJIPipeDataDirectoryEnvironment projectDefaultEnvironment)
void	ImageViewerUIROI2DDisplayApplicationSettings.setRenderROIAsOverlay(boolean renderROIAsOverlay)
void	ImageViewerUIROI2DDisplayApplicationSettings.setShowROI(boolean showROI)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imagejdatatypes.util

Methods in org.hkijena.jipipe.plugins.imagejdatatypes.util with annotations of type JIPipeParameter

Modifier and Type	Method and Description
ImageBlendMode	ImageBlendLayer.getBlendMode()
ImageJCalibrationMode	CalibrationParameters.getCalibrationMode()
boolean	ROIEditor.getCenterScale()
double	CalibrationParameters.getCustomMax()
double	CalibrationParameters.getCustomMin()
ROIElementDrawingMode	RoiDrawer.getDrawFilledOutlineMode()
RoiLabel	RoiDrawer.getDrawnLabel()
ROIElementDrawingMode	RoiDrawer.getDrawOutlineMode()
Color	ROIEditor.getFillColor()
OptionalColorParameter	RoiDrawer.getLabelBackground()
FontFamilyParameter	RoiDrawer.getLabelFontFamily()
Color	RoiDrawer.getLabelForeground()
int	RoiDrawer.getLabelSize()
Color	ROIEditor.getLineColor()
double	ROIEditor.getLineWidth()
double	RoiDrawer.getOpacity()
double	ImageBlendLayer.getOpacity()
OptionalColorParameter	RoiDrawer.getOverrideFillColor()
OptionalColorParameter	RoiDrawer.getOverrideLineColor()
OptionalDoubleParameter	RoiDrawer.getOverrideLineWidth()
int	ROIEditor.getPositionC()
int	ROIEditor.getPositionT()
double	ROIEditor.getPositionX()
double	ROIEditor.getPositionY()
int	ROIEditor.getPositionZ()
int	ImageBlendLayer.getPriority()
String	ROIEditor.getRoiName()
double	ROIEditor.getScaleX()
double	ROIEditor.getScaleY()
boolean	RoiDrawer.isDrawOver()
boolean	RoiDrawer.isIgnoreC()
boolean	RoiDrawer.isIgnoreT()
boolean	RoiDrawer.isIgnoreZ()
void	ImageBlendLayer.setBlendMode(ImageBlendMode blendMode)
void	CalibrationParameters.setCalibrationMode(ImageJCalibrationMode calibrationMode)
void	ROIEditor.setCenterScale(boolean centerScale)
void	CalibrationParameters.setCustomMax(double customMax)
void	CalibrationParameters.setCustomMin(double customMin)
void	RoiDrawer.setDrawFilledOutlineMode(ROIElementDrawingMode drawFilledOutlineMode)
void	RoiDrawer.setDrawnLabel(RoiLabel drawnLabel)
void	RoiDrawer.setDrawOutlineMode(ROIElementDrawingMode drawOutlineMode)
void	RoiDrawer.setDrawOver(boolean drawOver)
void	ROIEditor.setFillColor(Color fillColor)
void	RoiDrawer.setIgnoreC(boolean ignoreC)
void	RoiDrawer.setIgnoreT(boolean ignoreT)
void	RoiDrawer.setIgnoreZ(boolean ignoreZ)
void	RoiDrawer.setLabelBackground(OptionalColorParameter labelBackground)
void	RoiDrawer.setLabelFontFamily(FontFamilyParameter labelFontFamily)
void	RoiDrawer.setLabelForeground(Color labelForeground)
boolean	RoiDrawer.setLabelSize(int labelSize)
void	ROIEditor.setLineColor(Color lineColor)
void	ROIEditor.setLineWidth(double lineWidth)
boolean	RoiDrawer.setOpacity(double opacity)
void	ImageBlendLayer.setOpacity(double opacity)
void	RoiDrawer.setOverrideFillColor(OptionalColorParameter overrideFillColor)
void	RoiDrawer.setOverrideLineColor(OptionalColorParameter overrideLineColor)
void	RoiDrawer.setOverrideLineWidth(OptionalDoubleParameter overrideLineWidth)
void	ROIEditor.setPositionC(int positionC)
void	ROIEditor.setPositionT(int positionT)
void	ROIEditor.setPositionX(double positionX)
void	ROIEditor.setPositionY(double positionY)
void	ROIEditor.setPositionZ(int positionZ)
void	ImageBlendLayer.setPriority(int priority)
void	ROIEditor.setRoiName(String roiName)
void	ROIEditor.setScaleX(double scaleX)
void	ROIEditor.setScaleY(double scaleY)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imageviewer.legacy.plugins2d.maskdrawer

Methods in org.hkijena.jipipe.plugins.imageviewer.legacy.plugins2d.maskdrawer with annotations of type JIPipeParameter

Modifier and Type	Method and Description
ImageStatisticsSetParameter	MeasurementDrawerPlugin2D.Settings.getStatistics()
boolean	MeasurementDrawerPlugin2D.Settings.isMeasureInPhysicalUnits()
void	MeasurementDrawerPlugin2D.Settings.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	MeasurementDrawerPlugin2D.Settings.setStatistics(ImageStatisticsSetParameter statistics)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imageviewer.legacy.plugins2d.roimanager

Methods in org.hkijena.jipipe.plugins.imageviewer.legacy.plugins2d.roimanager with annotations of type JIPipeParameter

Modifier and Type	Method and Description
ImageStatisticsSetParameter	Measurement2DSettings.getStatistics()
boolean	Measurement2DSettings.isMeasureInPhysicalUnits()
void	Measurement2DSettings.setMeasureInPhysicalUnits(boolean measureInPhysicalUnits)
void	Measurement2DSettings.setStatistics(ImageStatisticsSetParameter statistics)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imageviewer.settings

Methods in org.hkijena.jipipe.plugins.imageviewer.settings with annotations of type JIPipeParameter

Modifier and Type	Method and Description
double	LegacyImageViewer2DUIApplicationSettings.getDefaultAnimationFPS()
double	LegacyImageViewer2DUIApplicationSettings.getZoomBaseSpeed()
double	LegacyImageViewer2DUIApplicationSettings.getZoomDynamicSpeed()
boolean	LegacyImageViewer2DUIApplicationSettings.isExportAsDisplayed()
void	LegacyImageViewer2DUIApplicationSettings.setDefaultAnimationFPS(double defaultAnimationFPS)
void	LegacyImageViewer2DUIApplicationSettings.setExportAsDisplayed(boolean exportAsDisplayed)
void	LegacyImageViewer2DUIApplicationSettings.setZoomBaseSpeed(double zoomBaseSpeed)
void	LegacyImageViewer2DUIApplicationSettings.setZoomDynamicSpeed(double zoomDynamicSpeed)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.imp.nodes

Methods in org.hkijena.jipipe.plugins.imp.nodes with annotations of type JIPipeParameter

Modifier and Type	Method and Description
Color	ConvertImpImageToImagePlusAlgorithm.getCheckerboardColor1()
Color	ConvertImpImageToImagePlusAlgorithm.getCheckerboardColor2()
int	ConvertImpImageToImagePlusAlgorithm.getCheckerboardSize()
ImpImageOutputFormat	ExportImpImageAlgorithm.getFileFormat()
DataExportExpressionParameter	ExportImpImageAlgorithm.getFilePath()
boolean	ConvertImpImageToImagePlusAlgorithm.isCreateCheckerboard()
boolean	ImportImpImageAlgorithm.isGreyscaleCorrection()
void	ConvertImpImageToImagePlusAlgorithm.setCheckerboardColor1(Color checkerboardColor1)
void	ConvertImpImageToImagePlusAlgorithm.setCheckerboardColor2(Color checkerboardColor2)
void	ConvertImpImageToImagePlusAlgorithm.setCheckerboardSize(int checkerboardSize)
void	ConvertImpImageToImagePlusAlgorithm.setCreateCheckerboard(boolean createCheckerboard)
void	ExportImpImageAlgorithm.setFileFormat(ImpImageOutputFormat fileFormat)
void	ExportImpImageAlgorithm.setFilePath(DataExportExpressionParameter filePath)
void	ImportImpImageAlgorithm.setGreyscaleCorrection(boolean greyscaleCorrection)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.multiparameters.nodes

Methods in org.hkijena.jipipe.plugins.multiparameters.nodes with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeTextAnnotationMergeMode	ParametersToAnnotationsAlgorithm.getAnnotationMergeStrategy()
ParameterCollectionList	DefineParametersFromTableAlgorithm.getColumns()
ParameterCollectionList	GenerateParametersFromExpressionAlgorithm.getColumns()
JIPipeDynamicParameterCollection	AnnotationsToParametersAlgorithm.getExtractedParameters()
JIPipeExpressionParameter	DefineParametersFromGlobalParametersAlgorithm.getFilter()
String	DefineParametersFromTableAlgorithm.Column.getKey()
String	GenerateParametersFromExpressionAlgorithm.Column.getKey()
OptionalTextAnnotationNameParameter	ExtractParametersAlgorithm.getNodeAliasIDAnnotation()
OptionalTextAnnotationNameParameter	ExtractParametersAlgorithm.getNodeNameAnnotation()
OptionalTextAnnotationNameParameter	ExtractParametersAlgorithm.getNodeUUIDAnnotation()
StringQueryExpression	ExtractParametersAlgorithm.getParameterKeyFilter()
GeneratedParameters	DefineParametersAlgorithm.getParameters()
ParameterTable	DefineParametersTableAlgorithm.getParameterTable()
TableColumnSourceExpressionParameter	DefineParametersFromTableAlgorithm.Column.getTableColumn()
JIPipeParameterTypeInfoRef	DefineParametersFromTableAlgorithm.Column.getType()
JIPipeParameterTypeInfoRef	GenerateParametersFromExpressionAlgorithm.Column.getType()
JIPipeExpressionParameter	GenerateParametersFromExpressionAlgorithm.Column.getValues()
boolean	AnnotationsToParametersAlgorithm.isIgnoreInvalidValues()
boolean	DefineParametersFromTableAlgorithm.Column.isValuesAreJson()
boolean	GenerateParametersFromExpressionAlgorithm.Column.isValuesAreJson()
void	ParametersToAnnotationsAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	DefineParametersFromTableAlgorithm.setColumns(ParameterCollectionList columns)
void	GenerateParametersFromExpressionAlgorithm.setColumns(ParameterCollectionList columns)
void	DefineParametersFromGlobalParametersAlgorithm.setFilter(JIPipeExpressionParameter filter)
void	AnnotationsToParametersAlgorithm.setIgnoreInvalidValues(boolean ignoreInvalidValues)
void	DefineParametersFromTableAlgorithm.Column.setKey(String key)
void	GenerateParametersFromExpressionAlgorithm.Column.setKey(String key)
void	ExtractParametersAlgorithm.setNodeAliasIDAnnotation(OptionalTextAnnotationNameParameter nodeAliasIDAnnotation)
void	ExtractParametersAlgorithm.setNodeNameAnnotation(OptionalTextAnnotationNameParameter nodeNameAnnotation)
void	ExtractParametersAlgorithm.setNodeUUIDAnnotation(OptionalTextAnnotationNameParameter nodeUUIDAnnotation)
void	ExtractParametersAlgorithm.setParameterKeyFilter(StringQueryExpression parameterKeyFilter)
void	DefineParametersTableAlgorithm.setParameterTable(ParameterTable parameterTable)
void	DefineParametersFromTableAlgorithm.Column.setTableColumn(TableColumnSourceExpressionParameter tableColumn)
void	DefineParametersFromTableAlgorithm.Column.setType(JIPipeParameterTypeInfoRef type)
void	GenerateParametersFromExpressionAlgorithm.Column.setType(JIPipeParameterTypeInfoRef type)
void	GenerateParametersFromExpressionAlgorithm.Column.setValues(JIPipeExpressionParameter values)
void	DefineParametersFromTableAlgorithm.Column.setValuesAreJson(boolean valuesAreJson)
void	GenerateParametersFromExpressionAlgorithm.Column.setValuesAreJson(boolean valuesAreJson)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.napari

Methods in org.hkijena.jipipe.plugins.napari with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalPythonEnvironment	NapariPluginApplicationSettings.getDefaultEnvironment()
void	NapariPluginApplicationSettings.setDefaultEnvironment(OptionalPythonEnvironment defaultEnvironment)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.omero

Methods in org.hkijena.jipipe.plugins.omero with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OMEROCredentialsEnvironment	OMEROPluginApplicationSettings.getDefaultCredentials()
String	OMEROCredentialsEnvironment.getEmail()
String	OMEROCredentialsEnvironment.getHost()
PasswordParameter	OMEROCredentialsEnvironment.getPassword()
int	OMEROCredentialsEnvironment.getPort()
OMEROCredentialsEnvironment.List	OMEROPluginApplicationSettings.getPresets()
OptionalOMEROCredentialsEnvironment	OMEROPluginProjectSettings.getProjectDefaultEnvironment()
String	OMEROCredentialsEnvironment.getUserName()
String	OMEROCredentialsEnvironment.getWebclientUrl()
void	OMEROPluginApplicationSettings.setDefaultCredentials(OMEROCredentialsEnvironment defaultCredentials)
void	OMEROCredentialsEnvironment.setEmail(String email)
void	OMEROCredentialsEnvironment.setHost(String host)
void	OMEROCredentialsEnvironment.setPassword(PasswordParameter password)
void	OMEROCredentialsEnvironment.setPort(int port)
void	OMEROPluginApplicationSettings.setPresets(OMEROCredentialsEnvironment.List presets)
void	OMEROPluginProjectSettings.setProjectDefaultEnvironment(OptionalOMEROCredentialsEnvironment projectDefaultEnvironment)
void	OMEROCredentialsEnvironment.setUserName(String userName)
void	OMEROCredentialsEnvironment.setWebclientUrl(String webclientUrl)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.omero.nodes.annotate

Methods in org.hkijena.jipipe.plugins.omero.nodes.annotate with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeTextAnnotationMergeMode	AnnotateOMEROWellReferenceAlgorithm.getAnnotationMergeMode()
JIPipeTextAnnotationMergeMode	AnnotateOMEROPlateReferenceAlgorithm.getAnnotationMergeMode()
JIPipeTextAnnotationMergeMode	AnnotateOMEROScreenReferenceAlgorithm.getAnnotationMergeMode()
JIPipeTextAnnotationMergeMode	AnnotateOMEROImageReferenceAlgorithm.getAnnotationMergeMode()
JIPipeTextAnnotationMergeMode	AnnotateOMERODatasetReferenceAlgorithm.getAnnotationMergeMode()
JIPipeTextAnnotationMergeMode	AnnotateOMEROProjectReferenceAlgorithm.getAnnotationMergeMode()
OptionalTextAnnotationNameParameter	AnnotateOMEROWellReferenceAlgorithm.getColorAnnotation()
OptionalTextAnnotationNameParameter	AnnotateOMEROWellReferenceAlgorithm.getColumnAnnotation()
OptionalTextAnnotationNameParameter	AnnotateOMEROPlateReferenceAlgorithm.getDescriptionAnnotation()
OptionalTextAnnotationNameParameter	AnnotateOMEROScreenReferenceAlgorithm.getDescriptionAnnotation()
OptionalTextAnnotationNameParameter	AnnotateOMEROImageReferenceAlgorithm.getDescriptionAnnotation()
OptionalTextAnnotationNameParameter	AnnotateOMERODatasetReferenceAlgorithm.getDescriptionAnnotation()
OptionalTextAnnotationNameParameter	AnnotateOMEROProjectReferenceAlgorithm.getDescriptionAnnotation()
OptionalTextAnnotationNameParameter	AnnotateOMEROWellReferenceAlgorithm.getIdAnnotation()
OptionalTextAnnotationNameParameter	AnnotateOMEROPlateReferenceAlgorithm.getIdAnnotation()
OptionalTextAnnotationNameParameter	AnnotateOMEROScreenReferenceAlgorithm.getIdAnnotation()
OptionalTextAnnotationNameParameter	AnnotateOMEROImageReferenceAlgorithm.getIdAnnotation()
OptionalTextAnnotationNameParameter	AnnotateOMERODatasetReferenceAlgorithm.getIdAnnotation()
OptionalTextAnnotationNameParameter	AnnotateOMEROProjectReferenceAlgorithm.getIdAnnotation()
OMEROKeyValuePairToAnnotationImporter	AnnotateOMEROWellReferenceAlgorithm.getKeyValuePairToAnnotationImporter()
OMEROKeyValuePairToAnnotationImporter	AnnotateOMEROPlateReferenceAlgorithm.getKeyValuePairToAnnotationImporter()
OMEROKeyValuePairToAnnotationImporter	AnnotateOMEROScreenReferenceAlgorithm.getKeyValuePairToAnnotationImporter()
OMEROKeyValuePairToAnnotationImporter	AnnotateOMEROImageReferenceAlgorithm.getKeyValuePairToAnnotationImporter()
OMEROKeyValuePairToAnnotationImporter	AnnotateOMERODatasetReferenceAlgorithm.getKeyValuePairToAnnotationImporter()
OMEROKeyValuePairToAnnotationImporter	AnnotateOMEROProjectReferenceAlgorithm.getKeyValuePairToAnnotationImporter()
OptionalTextAnnotationNameParameter	AnnotateOMEROPlateReferenceAlgorithm.getNameAnnotation()
OptionalTextAnnotationNameParameter	AnnotateOMEROScreenReferenceAlgorithm.getNameAnnotation()
OptionalTextAnnotationNameParameter	AnnotateOMEROImageReferenceAlgorithm.getNameAnnotation()
OptionalTextAnnotationNameParameter	AnnotateOMERODatasetReferenceAlgorithm.getNameAnnotation()
OptionalTextAnnotationNameParameter	AnnotateOMEROProjectReferenceAlgorithm.getNameAnnotation()
OptionalOMEROCredentialsEnvironment	AnnotateOMEROWellReferenceAlgorithm.getOverrideCredentials()
OptionalOMEROCredentialsEnvironment	AnnotateOMEROPlateReferenceAlgorithm.getOverrideCredentials()
OptionalOMEROCredentialsEnvironment	AnnotateOMEROScreenReferenceAlgorithm.getOverrideCredentials()
OptionalOMEROCredentialsEnvironment	AnnotateOMEROImageReferenceAlgorithm.getOverrideCredentials()
OptionalOMEROCredentialsEnvironment	AnnotateOMERODatasetReferenceAlgorithm.getOverrideCredentials()
OptionalOMEROCredentialsEnvironment	AnnotateOMEROProjectReferenceAlgorithm.getOverrideCredentials()
OptionalTextAnnotationNameParameter	AnnotateOMEROScreenReferenceAlgorithm.getProtocolDescriptionAnnotation()
OptionalTextAnnotationNameParameter	AnnotateOMEROScreenReferenceAlgorithm.getProtocolIdAnnotation()
OptionalTextAnnotationNameParameter	AnnotateOMEROScreenReferenceAlgorithm.getReagentSetDescriptionAnnotation()
OptionalTextAnnotationNameParameter	AnnotateOMEROScreenReferenceAlgorithm.getReagentSetIdAnnotation()
OptionalTextAnnotationNameParameter	AnnotateOMEROWellReferenceAlgorithm.getRowAnnotation()
OMEROTagToAnnotationImporter	AnnotateOMEROWellReferenceAlgorithm.getTagToAnnotationImporter()
OMEROTagToAnnotationImporter	AnnotateOMEROPlateReferenceAlgorithm.getTagToAnnotationImporter()
OMEROTagToAnnotationImporter	AnnotateOMEROScreenReferenceAlgorithm.getTagToAnnotationImporter()
OMEROTagToAnnotationImporter	AnnotateOMEROImageReferenceAlgorithm.getTagToAnnotationImporter()
OMEROTagToAnnotationImporter	AnnotateOMERODatasetReferenceAlgorithm.getTagToAnnotationImporter()
OMEROTagToAnnotationImporter	AnnotateOMEROProjectReferenceAlgorithm.getTagToAnnotationImporter()
OptionalTextAnnotationNameParameter	AnnotateOMEROWellReferenceAlgorithm.getTypeAnnotation()
void	AnnotateOMEROWellReferenceAlgorithm.setAnnotationMergeMode(JIPipeTextAnnotationMergeMode annotationMergeMode)
void	AnnotateOMEROPlateReferenceAlgorithm.setAnnotationMergeMode(JIPipeTextAnnotationMergeMode annotationMergeMode)
void	AnnotateOMEROScreenReferenceAlgorithm.setAnnotationMergeMode(JIPipeTextAnnotationMergeMode annotationMergeMode)
void	AnnotateOMEROImageReferenceAlgorithm.setAnnotationMergeMode(JIPipeTextAnnotationMergeMode annotationMergeMode)
void	AnnotateOMERODatasetReferenceAlgorithm.setAnnotationMergeMode(JIPipeTextAnnotationMergeMode annotationMergeMode)
void	AnnotateOMEROProjectReferenceAlgorithm.setAnnotationMergeMode(JIPipeTextAnnotationMergeMode annotationMergeMode)
void	AnnotateOMEROWellReferenceAlgorithm.setColorAnnotation(OptionalTextAnnotationNameParameter colorAnnotation)
void	AnnotateOMEROWellReferenceAlgorithm.setColumnAnnotation(OptionalTextAnnotationNameParameter columnAnnotation)
void	AnnotateOMEROPlateReferenceAlgorithm.setDescriptionAnnotation(OptionalTextAnnotationNameParameter descriptionAnnotation)
void	AnnotateOMEROScreenReferenceAlgorithm.setDescriptionAnnotation(OptionalTextAnnotationNameParameter descriptionAnnotation)
void	AnnotateOMEROImageReferenceAlgorithm.setDescriptionAnnotation(OptionalTextAnnotationNameParameter descriptionAnnotation)
void	AnnotateOMERODatasetReferenceAlgorithm.setDescriptionAnnotation(OptionalTextAnnotationNameParameter descriptionAnnotation)
void	AnnotateOMEROProjectReferenceAlgorithm.setDescriptionAnnotation(OptionalTextAnnotationNameParameter descriptionAnnotation)
void	AnnotateOMEROWellReferenceAlgorithm.setIdAnnotation(OptionalTextAnnotationNameParameter idAnnotation)
void	AnnotateOMEROPlateReferenceAlgorithm.setIdAnnotation(OptionalTextAnnotationNameParameter idAnnotation)
void	AnnotateOMEROScreenReferenceAlgorithm.setIdAnnotation(OptionalTextAnnotationNameParameter idAnnotation)
void	AnnotateOMEROImageReferenceAlgorithm.setIdAnnotation(OptionalTextAnnotationNameParameter idAnnotation)
void	AnnotateOMERODatasetReferenceAlgorithm.setIdAnnotation(OptionalTextAnnotationNameParameter idAnnotation)
void	AnnotateOMEROProjectReferenceAlgorithm.setIdAnnotation(OptionalTextAnnotationNameParameter idAnnotation)
void	AnnotateOMEROPlateReferenceAlgorithm.setNameAnnotation(OptionalTextAnnotationNameParameter nameAnnotation)
void	AnnotateOMEROScreenReferenceAlgorithm.setNameAnnotation(OptionalTextAnnotationNameParameter nameAnnotation)
void	AnnotateOMEROImageReferenceAlgorithm.setNameAnnotation(OptionalTextAnnotationNameParameter nameAnnotation)
void	AnnotateOMERODatasetReferenceAlgorithm.setNameAnnotation(OptionalTextAnnotationNameParameter nameAnnotation)
void	AnnotateOMEROProjectReferenceAlgorithm.setNameAnnotation(OptionalTextAnnotationNameParameter nameAnnotation)
void	AnnotateOMEROWellReferenceAlgorithm.setOverrideCredentials(OptionalOMEROCredentialsEnvironment overrideCredentials)
void	AnnotateOMEROPlateReferenceAlgorithm.setOverrideCredentials(OptionalOMEROCredentialsEnvironment overrideCredentials)
void	AnnotateOMEROScreenReferenceAlgorithm.setOverrideCredentials(OptionalOMEROCredentialsEnvironment overrideCredentials)
void	AnnotateOMEROImageReferenceAlgorithm.setOverrideCredentials(OptionalOMEROCredentialsEnvironment overrideCredentials)
void	AnnotateOMERODatasetReferenceAlgorithm.setOverrideCredentials(OptionalOMEROCredentialsEnvironment overrideCredentials)
void	AnnotateOMEROProjectReferenceAlgorithm.setOverrideCredentials(OptionalOMEROCredentialsEnvironment overrideCredentials)
void	AnnotateOMEROScreenReferenceAlgorithm.setProtocolDescriptionAnnotation(OptionalTextAnnotationNameParameter protocolDescriptionAnnotation)
void	AnnotateOMEROScreenReferenceAlgorithm.setProtocolIdAnnotation(OptionalTextAnnotationNameParameter protocolIdAnnotation)
void	AnnotateOMEROScreenReferenceAlgorithm.setReagentSetDescriptionAnnotation(OptionalTextAnnotationNameParameter reagentSetDescriptionAnnotation)
void	AnnotateOMEROScreenReferenceAlgorithm.setReagentSetIdAnnotation(OptionalTextAnnotationNameParameter reagentSetIdAnnotation)
void	AnnotateOMEROWellReferenceAlgorithm.setRowAnnotation(OptionalTextAnnotationNameParameter rowAnnotation)
void	AnnotateOMEROWellReferenceAlgorithm.setTypeAnnotation(OptionalTextAnnotationNameParameter typeAnnotation)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.omero.nodes.datasources

Methods in org.hkijena.jipipe.plugins.omero.nodes.datasources with annotations of type JIPipeParameter

Modifier and Type	Method and Description
LongList	OMERODatasetReferenceDataSource.getDatasetIds()
LongList	OMEROGroupReferenceDataSource.getGroupIds()
LongList	OMEROImageReferenceDataSource.getImageIds()
OptionalOMEROCredentialsEnvironment	OMERODatasetReferenceDataSource.getOverrideCredentials()
OptionalOMEROCredentialsEnvironment	OMEROScreenReferenceDataSource.getOverrideCredentials()
OptionalOMEROCredentialsEnvironment	OMEROProjectReferenceDataSource.getOverrideCredentials()
OptionalOMEROCredentialsEnvironment	OMEROPlateReferenceDataSource.getOverrideCredentials()
OptionalOMEROCredentialsEnvironment	OMEROImageReferenceDataSource.getOverrideCredentials()
OptionalOMEROCredentialsEnvironment	OMEROWellReferenceDataSource.getOverrideCredentials()
LongList	OMEROPlateReferenceDataSource.getPlateIds()
LongList	OMEROProjectReferenceDataSource.getProjectIds()
LongList	OMEROScreenReferenceDataSource.getScreenIds()
LongList	OMEROWellReferenceDataSource.getWellIds()
void	OMERODatasetReferenceDataSource.setDatasetIds(LongList datasetIds)
void	OMEROGroupReferenceDataSource.setGroupIds(LongList groupIds)
void	OMEROImageReferenceDataSource.setImageIds(LongList imageIds)
void	OMERODatasetReferenceDataSource.setOverrideCredentials(OptionalOMEROCredentialsEnvironment overrideCredentials)
void	OMEROScreenReferenceDataSource.setOverrideCredentials(OptionalOMEROCredentialsEnvironment overrideCredentials)
void	OMEROProjectReferenceDataSource.setOverrideCredentials(OptionalOMEROCredentialsEnvironment overrideCredentials)
void	OMEROPlateReferenceDataSource.setOverrideCredentials(OptionalOMEROCredentialsEnvironment overrideCredentials)
void	OMEROImageReferenceDataSource.setOverrideCredentials(OptionalOMEROCredentialsEnvironment overrideCredentials)
void	OMEROWellReferenceDataSource.setOverrideCredentials(OptionalOMEROCredentialsEnvironment overrideCredentials)
void	OMEROPlateReferenceDataSource.setPlateIds(LongList plateIds)
void	OMEROProjectReferenceDataSource.setProjectIds(LongList projectIds)
void	OMEROScreenReferenceDataSource.setScreenIds(LongList screenIds)
void	OMEROWellReferenceDataSource.setWellIds(LongList wellIds)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.omero.nodes.download

Methods in org.hkijena.jipipe.plugins.omero.nodes.download with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalStringParameter	DownloadOMEROTableAlgorithm.getFileNameAnnotation()
OptionalTextAnnotationNameParameter	DownloadOMEROImageAlgorithm.getIdAnnotation()
ImageImportParameters	DownloadOMEROImageAlgorithm.getImageImportParameters()
OMEROKeyValuePairToAnnotationImporter	DownloadOMEROImageAlgorithm.getKeyValuePairToAnnotationImporter()
OMEROKeyValuePairToAnnotationImporter	DownloadOMEROTableAlgorithm.getKeyValuePairToAnnotationImporter()
OptionalOMEROCredentialsEnvironment	DownloadOMEROImageAlgorithm.getOverrideCredentials()
OptionalOMEROCredentialsEnvironment	DownloadOMEROTableAlgorithm.getOverrideCredentials()
OMEROTagToAnnotationImporter	DownloadOMEROImageAlgorithm.getTagToAnnotationImporter()
OMEROTagToAnnotationImporter	DownloadOMEROTableAlgorithm.getTagToAnnotationImporter()
OptionalTextAnnotationNameParameter	DownloadOMEROImageAlgorithm.getTitleAnnotation()
void	DownloadOMEROTableAlgorithm.setFileNameAnnotation(OptionalStringParameter fileNameAnnotation)
void	DownloadOMEROImageAlgorithm.setIdAnnotation(OptionalTextAnnotationNameParameter idAnnotation)
void	DownloadOMEROImageAlgorithm.setOverrideCredentials(OptionalOMEROCredentialsEnvironment overrideCredentials)
void	DownloadOMEROTableAlgorithm.setOverrideCredentials(OptionalOMEROCredentialsEnvironment overrideCredentials)
void	DownloadOMEROImageAlgorithm.setTitleAnnotation(OptionalTextAnnotationNameParameter titleAnnotation)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.omero.nodes.manage

Methods in org.hkijena.jipipe.plugins.omero.nodes.manage with annotations of type JIPipeParameter

Modifier and Type	Method and Description
AnnotationsToOMEROKeyValuePairExporter	OMEROCreateDatasetAlgorithm.getKeyValuePairExporter()
JIPipeExpressionParameter	OMEROCreateDatasetAlgorithm.getNameGenerator()
OptionalOMEROCredentialsEnvironment	OMEROCreateDatasetAlgorithm.getOverrideCredentials()
AnnotationsToOMEROTagExporter	OMEROCreateDatasetAlgorithm.getTagExporter()
void	OMEROCreateDatasetAlgorithm.setNameGenerator(JIPipeExpressionParameter nameGenerator)
void	OMEROCreateDatasetAlgorithm.setOverrideCredentials(OptionalOMEROCredentialsEnvironment overrideCredentials)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.omero.nodes.navigate

Methods in org.hkijena.jipipe.plugins.omero.nodes.navigate with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeExpressionParameter	OMEROListPlatesAlgorithm.getFilters()
JIPipeExpressionParameter	OMEROListWellsAlgorithm.getFilters()
JIPipeExpressionParameter	OMEROListDatasetImagesAlgorithm.getFilters()
JIPipeExpressionParameter	OMEROListWellImagesAlgorithm.getFilters()
JIPipeExpressionParameter	OMEROListProjectsAlgorithm.getFilters()
JIPipeExpressionParameter	OMEROListDatasetsAlgorithm.getFilters()
JIPipeExpressionParameter	OMEROListGroupsAlgorithm.getFilters()
JIPipeExpressionParameter	OMEROListScreensAlgorithm.getFilters()
OptionalOMEROCredentialsEnvironment	OMEROListPlatesAlgorithm.getOverrideCredentials()
OptionalOMEROCredentialsEnvironment	OMEROListWellsAlgorithm.getOverrideCredentials()
OptionalOMEROCredentialsEnvironment	OMEROListDatasetImagesAlgorithm.getOverrideCredentials()
OptionalOMEROCredentialsEnvironment	OMEROListWellImagesAlgorithm.getOverrideCredentials()
OptionalOMEROCredentialsEnvironment	OMEROListProjectsAlgorithm.getOverrideCredentials()
OptionalOMEROCredentialsEnvironment	OMEROListDatasetsAlgorithm.getOverrideCredentials()
OptionalOMEROCredentialsEnvironment	OMEROListGroupsAlgorithm.getOverrideCredentials()
OptionalOMEROCredentialsEnvironment	OMEROListScreensAlgorithm.getOverrideCredentials()
void	OMEROListPlatesAlgorithm.setFilters(JIPipeExpressionParameter filters)
void	OMEROListWellsAlgorithm.setFilters(JIPipeExpressionParameter filters)
void	OMEROListDatasetImagesAlgorithm.setFilters(JIPipeExpressionParameter filters)
void	OMEROListWellImagesAlgorithm.setFilters(JIPipeExpressionParameter filters)
void	OMEROListProjectsAlgorithm.setFilters(JIPipeExpressionParameter filters)
void	OMEROListDatasetsAlgorithm.setFilters(JIPipeExpressionParameter filters)
void	OMEROListGroupsAlgorithm.setFilters(JIPipeExpressionParameter filters)
void	OMEROListScreensAlgorithm.setFilters(JIPipeExpressionParameter filters)
void	OMEROListPlatesAlgorithm.setOverrideCredentials(OptionalOMEROCredentialsEnvironment overrideCredentials)
void	OMEROListWellsAlgorithm.setOverrideCredentials(OptionalOMEROCredentialsEnvironment overrideCredentials)
void	OMEROListDatasetImagesAlgorithm.setOverrideCredentials(OptionalOMEROCredentialsEnvironment overrideCredentials)
void	OMEROListWellImagesAlgorithm.setOverrideCredentials(OptionalOMEROCredentialsEnvironment overrideCredentials)
void	OMEROListProjectsAlgorithm.setOverrideCredentials(OptionalOMEROCredentialsEnvironment overrideCredentials)
void	OMEROListDatasetsAlgorithm.setOverrideCredentials(OptionalOMEROCredentialsEnvironment overrideCredentials)
void	OMEROListGroupsAlgorithm.setOverrideCredentials(OptionalOMEROCredentialsEnvironment overrideCredentials)
void	OMEROListScreensAlgorithm.setOverrideCredentials(OptionalOMEROCredentialsEnvironment overrideCredentials)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.omero.nodes.upload

Methods in org.hkijena.jipipe.plugins.omero.nodes.upload with annotations of type JIPipeParameter

Modifier and Type	Method and Description
DataExportExpressionParameter	UploadOMEROTableAlgorithm.getFileNameGenerator()
DataExportExpressionParameter	UploadOMEROImageToDatasetAlgorithm.getFileNameGenerator()
AnnotationsToOMEROKeyValuePairExporter	UploadOMEROImageToDatasetAlgorithm.getKeyValuePairExporter()
OptionalOMEROCredentialsEnvironment	UploadOMEROTableAlgorithm.getOverrideCredentials()
OptionalOMEROCredentialsEnvironment	UploadOMEROImageToDatasetAlgorithm.getOverrideCredentials()
AnnotationsToOMEROTagExporter	UploadOMEROImageToDatasetAlgorithm.getTagExporter()
void	UploadOMEROTableAlgorithm.setFileNameGenerator(DataExportExpressionParameter fileNameGenerator)
void	UploadOMEROImageToDatasetAlgorithm.setFileNameGenerator(DataExportExpressionParameter fileNameGenerator)
void	UploadOMEROTableAlgorithm.setOverrideCredentials(OptionalOMEROCredentialsEnvironment overrideCredentials)
void	UploadOMEROImageToDatasetAlgorithm.setOverrideCredentials(OptionalOMEROCredentialsEnvironment overrideCredentials)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.omero.parameters

Methods in org.hkijena.jipipe.plugins.omero.parameters with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeExpressionParameter	OMEROKeyValuePairToAnnotationImporter.getAnnotationName()
JIPipeExpressionParameter	OMEROKeyValuePairToAnnotationImporter.getAnnotationValue()
OMEColorMode	ImageImportParameters.getColorMode()
RectangleList	ImageImportParameters.getCropRegions()
JIPipeExpressionParameter	AnnotationsToOMEROKeyValuePairExporter.getFilter()
JIPipeExpressionParameter	OMEROKeyValuePairToAnnotationImporter.getFilter()
JIPipeExpressionParameter	AnnotationsToOMEROKeyValuePairExporter.getKeyValuePairKey()
JIPipeExpressionParameter	AnnotationsToOMEROKeyValuePairExporter.getKeyValuePairValue()
ome.xml.model.enums.DimensionOrder	ImageImportParameters.getStackOrder()
OptionalTextAnnotationNameParameter	AnnotationsToOMEROTagExporter.getTagListAnnotation()
OptionalTextAnnotationNameParameter	OMEROTagToAnnotationImporter.getTagsToListAnnotation()
StringQueryExpression	OMEROTagToAnnotationImporter.getTagsToListFilter()
boolean	ImageImportParameters.isAutoScale()
boolean	ImageImportParameters.isConcatenate()
boolean	ImageImportParameters.isCrop()
boolean	AnnotationsToOMEROKeyValuePairExporter.isEnabled()
boolean	OMEROKeyValuePairToAnnotationImporter.isEnabled()
boolean	ImageImportParameters.isExtractRois()
boolean	ImageImportParameters.isSplitChannels()
boolean	ImageImportParameters.isSplitFocalPlanes()
boolean	ImageImportParameters.isSplitTimePoints()
boolean	ImageImportParameters.isStitchTiles()
boolean	ImageImportParameters.isSwapDimensions()
void	OMEROKeyValuePairToAnnotationImporter.setAnnotationName(JIPipeExpressionParameter annotationName)
void	OMEROKeyValuePairToAnnotationImporter.setAnnotationValue(JIPipeExpressionParameter annotationValue)
void	ImageImportParameters.setAutoScale(boolean autoScale)
void	ImageImportParameters.setColorMode(OMEColorMode colorMode)
void	ImageImportParameters.setConcatenate(boolean concatenate)
void	ImageImportParameters.setCrop(boolean crop)
void	ImageImportParameters.setCropRegions(RectangleList cropRegions)
void	AnnotationsToOMEROKeyValuePairExporter.setEnabled(boolean enabled)
void	OMEROKeyValuePairToAnnotationImporter.setEnabled(boolean enabled)
void	ImageImportParameters.setExtractRois(boolean extractRois)
void	AnnotationsToOMEROKeyValuePairExporter.setFilter(JIPipeExpressionParameter filter)
void	OMEROKeyValuePairToAnnotationImporter.setFilter(JIPipeExpressionParameter filter)
void	AnnotationsToOMEROKeyValuePairExporter.setKeyValuePairKey(JIPipeExpressionParameter keyValuePairKey)
void	AnnotationsToOMEROKeyValuePairExporter.setKeyValuePairValue(JIPipeExpressionParameter keyValuePairValue)
void	ImageImportParameters.setSplitChannels(boolean splitChannels)
void	ImageImportParameters.setSplitFocalPlanes(boolean splitFocalPlanes)
void	ImageImportParameters.setSplitTimePoints(boolean splitTimePoints)
void	ImageImportParameters.setStackOrder(ome.xml.model.enums.DimensionOrder stackOrder)
void	ImageImportParameters.setStitchTiles(boolean stitchTiles)
void	ImageImportParameters.setSwapDimensions(boolean swapDimensions)
void	AnnotationsToOMEROTagExporter.setTagListAnnotation(OptionalTextAnnotationNameParameter tagListAnnotation)
void	OMEROTagToAnnotationImporter.setTagsToListAnnotation(OptionalTextAnnotationNameParameter tagsToListAnnotation)
void	OMEROTagToAnnotationImporter.setTagsToListFilter(StringQueryExpression tagsToListFilter)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.omnipose

Methods in org.hkijena.jipipe.plugins.omnipose with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalPythonEnvironment	OmniposePluginApplicationSettings.getDefaultEnvironment()
OptionalPythonEnvironment	OmniposePluginProjectSettings.getOmnipose0Environment()
void	OmniposePluginApplicationSettings.setDefaultEnvironment(OptionalPythonEnvironment defaultEnvironment)
void	OmniposePluginProjectSettings.setOmnipose0Environment(OptionalPythonEnvironment omnipose0Environment)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.omnipose.algorithms

Methods in org.hkijena.jipipe.plugins.omnipose.algorithms with annotations of type JIPipeParameter

Modifier and Type	Method and Description
Cellpose2ChannelSettings	Omnipose0TrainingAlgorithm.getChannelSettings()
Cellpose2ChannelSettings	Omnipose0InferenceAlgorithm.getChannelSettings()
OptionalDoubleParameter	Omnipose0TrainingAlgorithm.getDiameter()
OptionalDoubleParameter	Omnipose0InferenceAlgorithm.getDiameter()
OptionalTextAnnotationNameParameter	Omnipose0InferenceAlgorithm.getDiameterAnnotation()
OmniposeSegmentationTweaksSettings	Omnipose0InferenceAlgorithm.getEnhancementParameters()
Cellpose2GPUSettings	Omnipose0TrainingAlgorithm.getGpuSettings()
Cellpose2GPUSettings	Omnipose0InferenceAlgorithm.getGpuSettings()
DataAnnotationQueryExpression	Omnipose0TrainingAlgorithm.getLabelDataAnnotation()
OptionalTextAnnotationNameParameter	ImportPretrainedOmnipose0ModelAlgorithm.getModelNameAnnotation()
PretrainedOmnipose0ModelList	ImportPretrainedOmnipose0ModelAlgorithm.getModels()
int	Omnipose0TrainingAlgorithm.getNumEpochs()
OptionalPythonEnvironment	Omnipose0TrainingAlgorithm.getOverrideEnvironment()
OptionalPythonEnvironment	Omnipose0InferenceAlgorithm.getOverrideEnvironment()
Cellpose2SegmentationOutputSettings	Omnipose0InferenceAlgorithm.getSegmentationOutputSettings()
OmniposeSegmentationThresholdSettings	Omnipose0InferenceAlgorithm.getThresholdParameters()
OmniposeTrainingTweaksSettings	Omnipose0TrainingAlgorithm.getTweaksSettings()
boolean	Omnipose0TrainingAlgorithm.isCleanUpAfterwards()
boolean	Omnipose0InferenceAlgorithm.isCleanUpAfterwards()
boolean	Omnipose0TrainingAlgorithm.isEnable3DSegmentation()
boolean	Omnipose0InferenceAlgorithm.isEnable3DSegmentation()
boolean	Omnipose0TrainingAlgorithm.isSuppressLogs()
boolean	Omnipose0InferenceAlgorithm.isSuppressLogs()
boolean	Omnipose0TrainingAlgorithm.isTrainSizeModel()
void	Omnipose0TrainingAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards)
void	Omnipose0InferenceAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards)
void	Omnipose0TrainingAlgorithm.setDiameter(OptionalDoubleParameter diameter)
void	Omnipose0InferenceAlgorithm.setDiameter(OptionalDoubleParameter diameter)
void	Omnipose0InferenceAlgorithm.setDiameterAnnotation(OptionalTextAnnotationNameParameter diameterAnnotation)
void	Omnipose0TrainingAlgorithm.setEnable3DSegmentation(boolean enable3DSegmentation)
void	Omnipose0InferenceAlgorithm.setEnable3DSegmentation(boolean enable3DSegmentation)
void	Omnipose0TrainingAlgorithm.setLabelDataAnnotation(DataAnnotationQueryExpression labelDataAnnotation)
void	ImportPretrainedOmnipose0ModelAlgorithm.setModelNameAnnotation(OptionalTextAnnotationNameParameter modelNameAnnotation)
void	ImportPretrainedOmnipose0ModelAlgorithm.setModels(PretrainedOmnipose0ModelList models)
void	Omnipose0TrainingAlgorithm.setNumEpochs(int numEpochs)
void	Omnipose0TrainingAlgorithm.setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment)
void	Omnipose0InferenceAlgorithm.setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment)
void	Omnipose0TrainingAlgorithm.setSuppressLogs(boolean suppressLogs)
void	Omnipose0InferenceAlgorithm.setSuppressLogs(boolean suppressLogs)
void	Omnipose0TrainingAlgorithm.setTrainSizeModel(boolean trainSizeModel)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.omnipose.legacy.algorithms

Methods in org.hkijena.jipipe.plugins.omnipose.legacy.algorithms with annotations of type JIPipeParameter

Modifier and Type	Method and Description
Cellpose2ChannelSettings	LegacyOmnipose0InferenceAlgorithm.getChannelSettings() Deprecated.
Cellpose2ChannelSettings	LegacyOmnipose0TrainingAlgorithm.getChannelSettings() Deprecated.
OptionalDoubleParameter	LegacyOmnipose0InferenceAlgorithm.getDiameter() Deprecated.
OptionalDoubleParameter	LegacyOmnipose0TrainingAlgorithm.getDiameter() Deprecated.
OptionalTextAnnotationNameParameter	LegacyOmnipose0InferenceAlgorithm.getDiameterAnnotation() Deprecated.
OmniposeSegmentationTweaksSettings	LegacyOmnipose0InferenceAlgorithm.getEnhancementParameters() Deprecated.
Cellpose2GPUSettings	LegacyOmnipose0InferenceAlgorithm.getGpuSettings() Deprecated.
Cellpose2GPUSettings	LegacyOmnipose0TrainingAlgorithm.getGpuSettings() Deprecated.
DataAnnotationQueryExpression	LegacyOmnipose0TrainingAlgorithm.getLabelDataAnnotation() Deprecated.
LegacyOmnipose0Model	LegacyOmnipose0InferenceAlgorithm.getModel() Deprecated.
int	LegacyOmnipose0TrainingAlgorithm.getNumEpochs() Deprecated.
OptionalPythonEnvironment	LegacyOmnipose0InferenceAlgorithm.getOverrideEnvironment() Deprecated.
OptionalPythonEnvironment	LegacyOmnipose0TrainingAlgorithm.getOverrideEnvironment() Deprecated.
LegacyOmnipose0PretrainedModel	LegacyOmnipose0TrainingAlgorithm.getPretrainedModel() Deprecated.
Cellpose2SegmentationOutputSettings	LegacyOmnipose0InferenceAlgorithm.getSegmentationOutputSettings() Deprecated.
OmniposeSegmentationThresholdSettings	LegacyOmnipose0InferenceAlgorithm.getThresholdParameters() Deprecated.
OmniposeTrainingTweaksSettings	LegacyOmnipose0TrainingAlgorithm.getTweaksSettings() Deprecated.
boolean	LegacyOmnipose0InferenceAlgorithm.isCleanUpAfterwards() Deprecated.
boolean	LegacyOmnipose0TrainingAlgorithm.isCleanUpAfterwards() Deprecated.
boolean	LegacyOmnipose0InferenceAlgorithm.isEnable3DSegmentation() Deprecated.
boolean	LegacyOmnipose0TrainingAlgorithm.isEnable3DSegmentation() Deprecated.
boolean	LegacyOmnipose0InferenceAlgorithm.isSuppressLogs() Deprecated.
boolean	LegacyOmnipose0TrainingAlgorithm.isSuppressLogs() Deprecated.
boolean	LegacyOmnipose0TrainingAlgorithm.isTrainSizeModel() Deprecated.
void	LegacyOmnipose0InferenceAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards) Deprecated.
void	LegacyOmnipose0TrainingAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards) Deprecated.
void	LegacyOmnipose0InferenceAlgorithm.setDiameter(OptionalDoubleParameter diameter) Deprecated.
void	LegacyOmnipose0TrainingAlgorithm.setDiameter(OptionalDoubleParameter diameter) Deprecated.
void	LegacyOmnipose0InferenceAlgorithm.setDiameterAnnotation(OptionalTextAnnotationNameParameter diameterAnnotation) Deprecated.
void	LegacyOmnipose0InferenceAlgorithm.setEnable3DSegmentation(boolean enable3DSegmentation) Deprecated.
void	LegacyOmnipose0TrainingAlgorithm.setEnable3DSegmentation(boolean enable3DSegmentation) Deprecated.
void	LegacyOmnipose0TrainingAlgorithm.setLabelDataAnnotation(DataAnnotationQueryExpression labelDataAnnotation) Deprecated.
void	LegacyOmnipose0InferenceAlgorithm.setModel(LegacyOmnipose0Model model) Deprecated.
void	LegacyOmnipose0TrainingAlgorithm.setNumEpochs(int numEpochs) Deprecated.
void	LegacyOmnipose0InferenceAlgorithm.setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment) Deprecated.
void	LegacyOmnipose0TrainingAlgorithm.setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment) Deprecated.
void	LegacyOmnipose0TrainingAlgorithm.setPretrainedModel(LegacyOmnipose0PretrainedModel pretrainedModel) Deprecated.
void	LegacyOmnipose0InferenceAlgorithm.setSuppressLogs(boolean suppressLogs) Deprecated.
void	LegacyOmnipose0TrainingAlgorithm.setSuppressLogs(boolean suppressLogs) Deprecated.
void	LegacyOmnipose0TrainingAlgorithm.setTrainSizeModel(boolean trainSizeModel) Deprecated.

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.omnipose.parameters

Methods in org.hkijena.jipipe.plugins.omnipose.parameters with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalDoubleParameter	OmniposeSegmentationTweaksSettings.getAnisotropy()
int	OmniposeTrainingTweaksSettings.getBatchSize()
double	OmniposeSegmentationThresholdSettings.getDiamThreshold()
double	OmniposeSegmentationThresholdSettings.getFlowThreshold()
double	OmniposeTrainingTweaksSettings.getLearningRate()
double	OmniposeSegmentationThresholdSettings.getMaskThreshold()
int	OmniposeTrainingTweaksSettings.getMinTrainMasks()
OptionalDoubleParameter	OmniposeSegmentationThresholdSettings.getStitchThreshold()
boolean	OmniposeSegmentationTweaksSettings.isCluster()
boolean	OmniposeTrainingTweaksSettings.isConcatenateDownsampledLayers()
boolean	OmniposeSegmentationTweaksSettings.isDisableResample()
boolean	OmniposeSegmentationThresholdSettings.isExcludeOnEdges()
boolean	OmniposeSegmentationTweaksSettings.isFastMode()
boolean	OmniposeTrainingTweaksSettings.isGenerateConnectedComponents()
boolean	OmniposeSegmentationTweaksSettings.isInterpolate()
boolean	OmniposeSegmentationTweaksSettings.isNetAverage()
boolean	OmniposeTrainingTweaksSettings.isUseResidualConnections()
boolean	OmniposeTrainingTweaksSettings.isUseStyleVector()
void	OmniposeSegmentationTweaksSettings.setAnisotropy(OptionalDoubleParameter anisotropy)
void	OmniposeTrainingTweaksSettings.setBatchSize(int batchSize)
void	OmniposeSegmentationTweaksSettings.setCluster(boolean cluster)
void	OmniposeTrainingTweaksSettings.setConcatenateDownsampledLayers(boolean concatenateDownsampledLayers)
void	OmniposeSegmentationThresholdSettings.setDiamThreshold(double diamThreshold)
void	OmniposeSegmentationTweaksSettings.setDisableResample(boolean disableResample)
void	OmniposeSegmentationThresholdSettings.setExcludeOnEdges(boolean excludeOnEdges)
void	OmniposeSegmentationTweaksSettings.setFastMode(boolean fastMode)
void	OmniposeSegmentationThresholdSettings.setFlowThreshold(double flowThreshold)
void	OmniposeTrainingTweaksSettings.setGenerateConnectedComponents(boolean generateConnectedComponents)
void	OmniposeSegmentationTweaksSettings.setInterpolate(boolean interpolate)
void	OmniposeTrainingTweaksSettings.setLearningRate(double learningRate)
void	OmniposeSegmentationThresholdSettings.setMaskThreshold(double maskThreshold)
void	OmniposeTrainingTweaksSettings.setMinTrainMasks(int minTrainMasks)
void	OmniposeSegmentationTweaksSettings.setNetAverage(boolean netAverage)
void	OmniposeSegmentationThresholdSettings.setStitchThreshold(OptionalDoubleParameter stitchThreshold)
void	OmniposeTrainingTweaksSettings.setUseResidualConnections(boolean useResidualConnections)
void	OmniposeTrainingTweaksSettings.setUseStyleVector(boolean useStyleVector)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.opencv.nodes

Methods in org.hkijena.jipipe.plugins.opencv.nodes with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OpenCvDepth	ConvertDepthAlgorithm.getDepth()
InpaintingAlgorithm.Method	InpaintingAlgorithm.getMethod()
int	InpaintingAlgorithm.getRadius()
OpenCvType	ConvertTypeAlgorithm.getType()
void	ConvertDepthAlgorithm.setDepth(OpenCvDepth depth)
void	InpaintingAlgorithm.setMethod(InpaintingAlgorithm.Method method)
void	InpaintingAlgorithm.setRadius(int radius)
void	ConvertTypeAlgorithm.setType(OpenCvType type)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.opencv.nodes.filters

Methods in org.hkijena.jipipe.plugins.opencv.nodes.filters with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OpenCvBorderType	BilateralFilterAlgorithm.getBorderType()
int	BilateralFilterAlgorithm.getDiameter()
double	BilateralFilterAlgorithm.getSigmaColor()
double	BilateralFilterAlgorithm.getSigmaSpace()
void	BilateralFilterAlgorithm.setBorderType(OpenCvBorderType borderType)
void	BilateralFilterAlgorithm.setDiameter(int diameter)
void	BilateralFilterAlgorithm.setSigmaColor(double sigmaColor)
void	BilateralFilterAlgorithm.setSigmaSpace(double sigmaSpace)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.opencv.nodes.generators

Methods in org.hkijena.jipipe.plugins.opencv.nodes.generators with annotations of type JIPipeParameter

Modifier and Type	Method and Description
double	GaborKernelGenerator.getGamma()
int	GaborKernelGenerator.getHeight()
double	GaborKernelGenerator.getLambd()
double	GaborKernelGenerator.getPsi()
double	GaussianKernelGenerator.getSigma()
double	GaborKernelGenerator.getSigma()
int	GaussianKernelGenerator.getSize()
double	GaborKernelGenerator.getTheta()
int	GaborKernelGenerator.getWidth()
void	GaborKernelGenerator.setGamma(double gamma)
void	GaborKernelGenerator.setHeight(int height)
void	GaborKernelGenerator.setLambd(double lambd)
void	GaborKernelGenerator.setPsi(double psi)
void	GaussianKernelGenerator.setSigma(double sigma)
void	GaborKernelGenerator.setSigma(double sigma)
void	GaussianKernelGenerator.setSize(int size)
void	GaborKernelGenerator.setTheta(double theta)
void	GaborKernelGenerator.setWidth(int width)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.parameters.api.enums

Methods in org.hkijena.jipipe.plugins.parameters.api.enums with annotations of type JIPipeParameter

Modifier and Type	Method and Description
DynamicStringSetParameter	EnumParameterGenerator.getGeneratedValues()
void	EnumParameterGenerator.setGeneratedValues(DynamicStringSetParameter generatedValues)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.parameters.library.filesystem

Methods in org.hkijena.jipipe.plugins.parameters.library.filesystem with annotations of type JIPipeParameter

Modifier and Type	Method and Description
String	FileChooserBookmark.getName()
Path	FileChooserBookmark.getPath()
void	FileChooserBookmark.setName(String name)
void	FileChooserBookmark.setPath(Path path)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.parameters.library.primitives

Methods in org.hkijena.jipipe.plugins.parameters.library.primitives with annotations of type JIPipeParameter

Modifier and Type	Method and Description
double	StringOrDouble.getDoubleValue()
double	NumberRangeParameterGenerator.getMaxNumber()
double	NumberRangeParameterGenerator.getMinNumber()
StringOrDouble.Mode	StringOrDouble.getMode()
double	NumberRangeParameterGenerator.getStepSize()
String	StringOrDouble.getStringValue()
void	StringOrDouble.setDoubleValue(double doubleValue)
void	NumberRangeParameterGenerator.setMaxNumber(double maxNumber)
void	NumberRangeParameterGenerator.setMinNumber(double minNumber)
void	StringOrDouble.setMode(StringOrDouble.Mode mode)
void	NumberRangeParameterGenerator.setStepSize(double stepSize)
void	StringOrDouble.setStringValue(String String)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.parameters.library.references

Methods in org.hkijena.jipipe.plugins.parameters.library.references with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalBooleanParameter	ImageJDataExportOperationRef.getActivate()
OptionalBooleanParameter	ImageJDataExportOperationRef.getAppend()
OptionalBooleanParameter	ImageJDataImportOperationRef.getDuplicate()
OptionalBooleanParameter	ImageJDataExportOperationRef.getDuplicate()
OptionalStringParameter	ImageJDataImportOperationRef.getName()
OptionalStringParameter	ImageJDataExportOperationRef.getName()
OptionalBooleanParameter	ImageJDataExportOperationRef.getNoWindows()
void	ImageJDataExportOperationRef.setActivate(OptionalBooleanParameter activate)
void	ImageJDataExportOperationRef.setAppend(OptionalBooleanParameter append)
void	ImageJDataImportOperationRef.setDuplicate(OptionalBooleanParameter duplicate)
void	ImageJDataExportOperationRef.setDuplicate(OptionalBooleanParameter duplicate)
void	ImageJDataImportOperationRef.setName(OptionalStringParameter name)
void	ImageJDataExportOperationRef.setName(OptionalStringParameter name)
void	ImageJDataExportOperationRef.setNoWindows(OptionalBooleanParameter noWindows)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.parameters.library.roi

Methods in org.hkijena.jipipe.plugins.parameters.library.roi with annotations of type JIPipeParameter

Modifier and Type	Method and Description
Anchor	FixedMargin.getAnchor()
Anchor	Margin.getAnchor()
NumericFunctionExpression	FixedMargin.getBottom()
NumericFunctionExpression	Margin.getBottom()
NumericFunctionExpression	InnerMargin.getBottom()
NumericFunctionExpression	Margin.getHeight()
NumericFunctionExpression	FixedMargin.getLeft()
NumericFunctionExpression	Margin.getLeft()
NumericFunctionExpression	InnerMargin.getLeft()
NumericFunctionExpression	FixedMargin.getRight()
NumericFunctionExpression	Margin.getRight()
NumericFunctionExpression	InnerMargin.getRight()
NumericFunctionExpression	FixedMargin.getTop()
NumericFunctionExpression	Margin.getTop()
NumericFunctionExpression	InnerMargin.getTop()
NumericFunctionExpression	Margin.getWidth()
void	FixedMargin.setAnchor(Anchor anchor)
void	Margin.setAnchor(Anchor anchor)
void	FixedMargin.setBottom(NumericFunctionExpression bottom)
void	Margin.setBottom(NumericFunctionExpression bottom)
void	InnerMargin.setBottom(NumericFunctionExpression bottom)
void	Margin.setHeight(NumericFunctionExpression height)
void	FixedMargin.setLeft(NumericFunctionExpression left)
void	Margin.setLeft(NumericFunctionExpression left)
void	InnerMargin.setLeft(NumericFunctionExpression left)
void	FixedMargin.setRight(NumericFunctionExpression right)
void	Margin.setRight(NumericFunctionExpression right)
void	InnerMargin.setRight(NumericFunctionExpression right)
void	FixedMargin.setTop(NumericFunctionExpression top)
void	Margin.setTop(NumericFunctionExpression top)
void	InnerMargin.setTop(NumericFunctionExpression top)
void	Margin.setWidth(NumericFunctionExpression width)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.pipelinerender

Methods in org.hkijena.jipipe.plugins.pipelinerender with annotations of type JIPipeParameter

Modifier and Type	Method and Description
int	RenderPipelineRunSettings.getLabelFontSize()
OptionalIntegerParameter	RenderPipelineRunSettings.getMaxEdgeWidth()
boolean	RenderPipelineRunSettings.isRenderLabel()
boolean	RenderPipelineRunSettings.isRenderShadow()
void	RenderPipelineRunSettings.setLabelFontSize(int labelFontSize)
void	RenderPipelineRunSettings.setMaxEdgeWidth(OptionalIntegerParameter maxEdgeWidth)
void	RenderPipelineRunSettings.setRenderLabel(boolean renderLabel)
void	RenderPipelineRunSettings.setRenderShadow(boolean renderShadow)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.plots.datatypes

Methods in org.hkijena.jipipe.plugins.plots.datatypes with annotations of type JIPipeParameter

Modifier and Type	Method and Description
Color	JFreeChartPlotData.getBackgroundColor()
int	HistogramJFreeChartPlotData.getBinAxisFontSize()
String	HistogramJFreeChartPlotData.getBinAxisLabel()
OptionalDoubleParameter	HistogramJFreeChartPlotData.getBinAxisMaximum()
OptionalDoubleParameter	HistogramJFreeChartPlotData.getBinAxisMinimum()
int	HistogramJFreeChartPlotData.getBins()
int	CategoryJFreeChartPlotData.getCategoryAxisFontSize()
String	CategoryJFreeChartPlotData.getCategoryAxisLabel()
ColorMap	JFreeChartPlotData.getColorMap()
ColorListParameter	JFreeChartPlotData.getCustomColorMap()
int	JFreeChartPlotData.getExportHeight()
int	JFreeChartPlotData.getExportWidth()
Color	JFreeChartPlotData.getGridColor()
HistogramJFreeChartPlotData.HistogramType_	HistogramJFreeChartPlotData.getHistogramType()
int	Pie2DJFreeChartPlotData.getLabelFontSize()
int	Pie3DJFreeChartPlotData.getLabelFontSize()
int	JFreeChartPlotData.getLegendFontSize()
int	LineStatisticalCategoryJFreeChartPlotData.getLineThickness()
int	LineCategoryJFreeChartPlotData.getLineThickness()
int	LineXYJFreeChartPlotData.getLineThickness()
String	JFreeChartPlotDataSeries.getName()
String	JFreeChartPlotData.getTitle()
int	JFreeChartPlotData.getTitleFontSize()
int	CategoryJFreeChartPlotData.getValueAxisFontSize()
int	HistogramJFreeChartPlotData.getValueAxisFontSize()
String	CategoryJFreeChartPlotData.getValueAxisLabel()
String	HistogramJFreeChartPlotData.getValueAxisLabel()
OptionalDoubleParameter	CategoryJFreeChartPlotData.getValueAxisMaximum()
OptionalDoubleParameter	HistogramJFreeChartPlotData.getValueAxisMaximum()
OptionalDoubleParameter	CategoryJFreeChartPlotData.getValueAxisMinimum()
OptionalDoubleParameter	HistogramJFreeChartPlotData.getValueAxisMinimum()
int	XYJFreeChartPlotData.getxAxisFontSize()
String	XYJFreeChartPlotData.getxAxisLabel()
OptionalDoubleParameter	XYJFreeChartPlotData.getxAxisMaximum()
OptionalDoubleParameter	XYJFreeChartPlotData.getxAxisMinimum()
int	XYJFreeChartPlotData.getyAxisFontSize()
String	XYJFreeChartPlotData.getyAxisLabel()
OptionalDoubleParameter	XYJFreeChartPlotData.getyAxisMaximum()
OptionalDoubleParameter	XYJFreeChartPlotData.getyAxisMinimum()
boolean	JFreeChartPlotData.isUseCustomColorMap()
boolean	JFreeChartPlotData.isWithLegend()
void	JFreeChartPlotData.setBackgroundColor(Color backgroundColor)
void	HistogramJFreeChartPlotData.setBinAxisFontSize(int binAxisFontSize)
void	HistogramJFreeChartPlotData.setBinAxisLabel(String binAxisLabel)
void	HistogramJFreeChartPlotData.setBinAxisMaximum(OptionalDoubleParameter binAxisMaximum)
void	HistogramJFreeChartPlotData.setBinAxisMinimum(OptionalDoubleParameter binAxisMinimum)
void	HistogramJFreeChartPlotData.setBins(int bins)
void	CategoryJFreeChartPlotData.setCategoryAxisFontSize(int categoryAxisFontSize)
void	CategoryJFreeChartPlotData.setCategoryAxisLabel(String categoryAxisLabel)
void	JFreeChartPlotData.setColorMap(ColorMap colorMap)
void	JFreeChartPlotData.setCustomColorMap(ColorListParameter customColorMap)
void	JFreeChartPlotData.setExportHeight(int exportHeight)
void	JFreeChartPlotData.setExportWidth(int exportWidth)
void	JFreeChartPlotData.setGridColor(Color gridColor)
void	HistogramJFreeChartPlotData.setHistogramType(HistogramJFreeChartPlotData.HistogramType_ histogramType)
boolean	Pie2DJFreeChartPlotData.setLabelFontSize(int labelFontSize)
boolean	Pie3DJFreeChartPlotData.setLabelFontSize(int labelFontSize)
void	JFreeChartPlotData.setLegendFontSize(int legendFontSize)
void	LineStatisticalCategoryJFreeChartPlotData.setLineThickness(int lineThickness)
void	LineCategoryJFreeChartPlotData.setLineThickness(int lineThickness)
void	LineXYJFreeChartPlotData.setLineThickness(int lineThickness)
void	JFreeChartPlotDataSeries.setName(String name)
void	JFreeChartPlotData.setTitle(String title) Sets the plot title
boolean	JFreeChartPlotData.setTitleFontSize(int titleFontSize)
void	JFreeChartPlotData.setUseCustomColorMap(boolean useCustomColorMap)
void	CategoryJFreeChartPlotData.setValueAxisFontSize(int valueAxisFontSize)
void	HistogramJFreeChartPlotData.setValueAxisFontSize(int valueAxisFontSize)
void	CategoryJFreeChartPlotData.setValueAxisLabel(String valueAxisLabel)
void	HistogramJFreeChartPlotData.setValueAxisLabel(String valueAxisLabel)
void	CategoryJFreeChartPlotData.setValueAxisMaximum(OptionalDoubleParameter valueAxisMaximum)
void	HistogramJFreeChartPlotData.setValueAxisMaximum(OptionalDoubleParameter valueAxisMaximum)
void	CategoryJFreeChartPlotData.setValueAxisMinimum(OptionalDoubleParameter valueAxisMinimum)
void	HistogramJFreeChartPlotData.setValueAxisMinimum(OptionalDoubleParameter valueAxisMinimum)
void	JFreeChartPlotData.setWithLegend(boolean withLegend)
void	XYJFreeChartPlotData.setxAxisFontSize(int xAxisFontSize)
void	XYJFreeChartPlotData.setxAxisLabel(String xAxisLabel)
void	XYJFreeChartPlotData.setxAxisMaximum(OptionalDoubleParameter xAxisMaximum)
void	XYJFreeChartPlotData.setxAxisMinimum(OptionalDoubleParameter xAxisMinimum)
void	XYJFreeChartPlotData.setyAxisFontSize(int yAxisFontSize)
void	XYJFreeChartPlotData.setyAxisLabel(String yAxisLabel)
void	XYJFreeChartPlotData.setyAxisMaximum(OptionalDoubleParameter yAxisMaximum)
void	XYJFreeChartPlotData.setyAxisMinimum(OptionalDoubleParameter yAxisMinimum)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.plots.nodes

Methods in org.hkijena.jipipe.plugins.plots.nodes with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeDynamicParameterCollection	PlotTablesAlgorithm.getInputColumns() Deprecated.
JIPipeDynamicParameterCollection	PlotTables2Algorithm.getInputColumns()
JIPipeDataInfoRef	PlotTablesAlgorithm.getPlotType() Deprecated.
JFreeChartPlotData	PlotTablesAlgorithm.getPlotTypeParameters() Deprecated.
JFreeChartPlotData	PlotTables2Algorithm.getPlotTypeParameters()
StringQueryExpression	PlotTablesAlgorithm.getSeriesName() Deprecated.
StringQueryExpression	PlotTables2Algorithm.getSeriesName()
void	PlotTablesAlgorithm.setPlotType(JIPipeDataInfoRef plotType) Deprecated.
void	PlotTablesAlgorithm.setSeriesName(StringQueryExpression seriesName) Deprecated.
void	PlotTables2Algorithm.setSeriesName(StringQueryExpression seriesName)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.processes

Methods in org.hkijena.jipipe.plugins.processes with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeExpressionParameter	ProcessEnvironment.getArguments()
StringQueryExpressionAndStringPairParameter.List	ProcessEnvironment.getEnvironmentVariables()
Path	ProcessEnvironment.getExecutablePathLinux()
Path	ProcessEnvironment.getExecutablePathOSX()
Path	ProcessEnvironment.getExecutablePathWindows()
ProcessEnvironment.List	JIPipeProcessesPluginApplicationSettings.getPresets()
JIPipeExpressionParameter	ProcessEnvironment.getWorkDirectory()
void	ProcessEnvironment.setArguments(JIPipeExpressionParameter arguments)
void	ProcessEnvironment.setEnvironmentVariables(StringQueryExpressionAndStringPairParameter.List environmentVariables)
void	ProcessEnvironment.setExecutablePathLinux(Path executablePathLinux)
void	ProcessEnvironment.setExecutablePathOSX(Path executablePathOSX)
void	ProcessEnvironment.setExecutablePathWindows(Path executablePathWindows)
void	JIPipeProcessesPluginApplicationSettings.setPresets(ProcessEnvironment.List presets)
void	ProcessEnvironment.setWorkDirectory(JIPipeExpressionParameter workDirectory)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.python

Methods in org.hkijena.jipipe.plugins.python with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeExpressionParameter	PythonEnvironment.getArguments()
OptionalPythonEnvironment	PythonPluginApplicationSettings.getDefaultEnvironment()
StringQueryExpressionAndStringPairParameter.List	PythonEnvironment.getEnvironmentVariables()
Path	PythonEnvironment.getExecutablePath()
Path	PythonPackageLibraryEnvironment.getLibraryDirectory()
PythonEnvironment.List	PythonPluginApplicationSettings.getPresets()
OptionalPythonEnvironment	PythonPluginProjectSettings.getProjectDefaultEnvironment()
OptionalJIPipePythonAdapterLibraryEnvironment	PythonPluginProjectSettings.getProjectPythonAdapterLibraryEnvironment()
PythonEnvironmentType	PythonEnvironment.getType()
boolean	PythonPackageLibraryEnvironment.isProvidedByEnvironment()
void	PythonEnvironment.setArguments(JIPipeExpressionParameter arguments)
void	PythonPluginApplicationSettings.setDefaultEnvironment(OptionalPythonEnvironment defaultEnvironment)
void	PythonEnvironment.setEnvironmentVariables(StringQueryExpressionAndStringPairParameter.List environmentVariables)
void	PythonEnvironment.setExecutablePath(Path executablePath)
void	PythonPackageLibraryEnvironment.setLibraryDirectory(Path libraryDirectory)
void	PythonPluginApplicationSettings.setPresets(PythonEnvironment.List presets)
void	PythonPluginProjectSettings.setProjectDefaultEnvironment(OptionalPythonEnvironment projectDefaultEnvironment)
void	PythonPluginProjectSettings.setProjectPythonAdapterLibraryEnvironment(OptionalJIPipePythonAdapterLibraryEnvironment projectPythonAdapterLibraryEnvironment)
void	PythonPackageLibraryEnvironment.setProvidedByEnvironment(boolean providedByEnvironment)
void	PythonEnvironment.setType(PythonEnvironmentType type)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.python.adapter

Methods in org.hkijena.jipipe.plugins.python.adapter with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalJIPipePythonAdapterLibraryEnvironment	JIPipePythonPluginAdapterApplicationSettings.getDefaultEnvironment()
JIPipePythonAdapterLibraryEnvironment.List	JIPipePythonPluginAdapterApplicationSettings.getPresets()
void	JIPipePythonPluginAdapterApplicationSettings.setDefaultEnvironment(OptionalJIPipePythonAdapterLibraryEnvironment defaultEnvironment)
void	JIPipePythonPluginAdapterApplicationSettings.setPresets(JIPipePythonAdapterLibraryEnvironment.List presets)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.python.algorithms.jython

Methods in org.hkijena.jipipe.plugins.python.algorithms.jython with annotations of type JIPipeParameter

Modifier and Type	Method and Description
PythonScript	SimpleIteratingJythonScriptAlgorithm.getCode()
PythonScript	MergingJythonScriptAlgorithm.getCode()
PythonScript	JythonScriptAlgorithm.getCode()
PythonScript	IteratingJythonScriptAlgorithm.getCode()
JIPipeDynamicParameterCollection	SimpleIteratingJythonScriptAlgorithm.getScriptParameters()
JIPipeDynamicParameterCollection	MergingJythonScriptAlgorithm.getScriptParameters()
JIPipeDynamicParameterCollection	JythonScriptAlgorithm.getScriptParameters()
JIPipeDynamicParameterCollection	IteratingJythonScriptAlgorithm.getScriptParameters()
void	SimpleIteratingJythonScriptAlgorithm.setCode(PythonScript code)
void	MergingJythonScriptAlgorithm.setCode(PythonScript code)
void	JythonScriptAlgorithm.setCode(PythonScript code)
void	IteratingJythonScriptAlgorithm.setCode(PythonScript code)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.python.algorithms.python

Methods in org.hkijena.jipipe.plugins.python.algorithms.python with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeTextAnnotationMergeMode	PythonScriptAlgorithm.getAnnotationMergeStrategy()
JIPipeTextAnnotationMergeMode	MergingPythonScriptAlgorithm.getAnnotationMergeStrategy()
JIPipeTextAnnotationMergeMode	IteratingPythonScriptAlgorithm.getAnnotationMergeStrategy()
PythonScript	PythonScriptAlgorithm.getCode()
PythonScript	MergingPythonScriptAlgorithm.getCode()
PythonScript	IteratingPythonScriptAlgorithm.getCode()
OptionalPythonEnvironment	PythonScriptAlgorithm.getOverrideEnvironment()
OptionalPythonEnvironment	MergingPythonScriptAlgorithm.getOverrideEnvironment()
OptionalPythonEnvironment	IteratingPythonScriptAlgorithm.getOverrideEnvironment()
JIPipeDynamicParameterCollection	PythonScriptAlgorithm.getScriptParameters()
JIPipeDynamicParameterCollection	MergingPythonScriptAlgorithm.getScriptParameters()
JIPipeDynamicParameterCollection	IteratingPythonScriptAlgorithm.getScriptParameters()
boolean	PythonScriptAlgorithm.isCleanUpAfterwards()
boolean	MergingPythonScriptAlgorithm.isCleanUpAfterwards()
boolean	IteratingPythonScriptAlgorithm.isCleanUpAfterwards()
boolean	PythonScriptAlgorithm.isSuppressLogs()
boolean	MergingPythonScriptAlgorithm.isSuppressLogs()
boolean	IteratingPythonScriptAlgorithm.isSuppressLogs()
void	PythonScriptAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	MergingPythonScriptAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	IteratingPythonScriptAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	PythonScriptAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards)
void	MergingPythonScriptAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards)
void	IteratingPythonScriptAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards)
void	PythonScriptAlgorithm.setCode(PythonScript code)
void	MergingPythonScriptAlgorithm.setCode(PythonScript code)
void	IteratingPythonScriptAlgorithm.setCode(PythonScript code)
void	PythonScriptAlgorithm.setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment)
void	MergingPythonScriptAlgorithm.setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment)
void	IteratingPythonScriptAlgorithm.setOverrideEnvironment(OptionalPythonEnvironment overrideEnvironment)
void	PythonScriptAlgorithm.setSuppressLogs(boolean suppressLogs)
void	MergingPythonScriptAlgorithm.setSuppressLogs(boolean suppressLogs)
void	IteratingPythonScriptAlgorithm.setSuppressLogs(boolean suppressLogs)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.python.installers

Methods in org.hkijena.jipipe.plugins.python.installers with annotations of type JIPipeParameter

Modifier and Type	Method and Description
Path	SelectCondaEnvPythonInstaller.Configuration.getCondaExecutable()
String	SelectCondaEnvPythonInstaller.Configuration.getEnvironmentName()
String	SelectCondaEnvPythonInstaller.Configuration.getName()
String	SelectVirtualEnvPythonInstaller.Configuration.getName()
String	SelectSystemPythonInstaller.Configuration.getName()
OptionalPathParameter	SelectCondaEnvPythonInstaller.Configuration.getOverrideEnvironment()
Path	SelectSystemPythonInstaller.Configuration.getPythonExecutable()
Path	SelectVirtualEnvPythonInstaller.Configuration.getVirtualEnvDirectory()
void	SelectCondaEnvPythonInstaller.Configuration.setCondaExecutable(Path condaExecutable)
void	SelectCondaEnvPythonInstaller.Configuration.setEnvironmentName(String environmentName)
void	SelectCondaEnvPythonInstaller.Configuration.setName(String name)
void	SelectVirtualEnvPythonInstaller.Configuration.setName(String name)
void	SelectSystemPythonInstaller.Configuration.setName(String name)
void	SelectCondaEnvPythonInstaller.Configuration.setOverrideEnvironment(OptionalPathParameter overrideEnvironment)
void	SelectSystemPythonInstaller.Configuration.setPythonExecutable(Path pythonExecutable)
void	SelectVirtualEnvPythonInstaller.Configuration.setVirtualEnvDirectory(Path virtualEnvDirectory)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.r

Methods in org.hkijena.jipipe.plugins.r with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeExpressionParameter	REnvironment.getArguments()
OptionalREnvironment	RPluginApplicationSettings.getDefaultEnvironment()
StringQueryExpressionAndStringPairParameter.List	REnvironment.getEnvironmentVariables()
REnvironment.List	RPluginApplicationSettings.getPresets()
OptionalREnvironment	RPluginProjectSettings.getProjectDefaultEnvironment()
Path	REnvironment.getRExecutablePath()
Path	REnvironment.getRScriptExecutablePath()
void	REnvironment.setArguments(JIPipeExpressionParameter arguments)
void	RPluginApplicationSettings.setDefaultEnvironment(OptionalREnvironment defaultEnvironment)
void	REnvironment.setEnvironmentVariables(StringQueryExpressionAndStringPairParameter.List environmentVariables)
void	RPluginApplicationSettings.setPresets(REnvironment.List presets)
void	RPluginProjectSettings.setProjectDefaultEnvironment(OptionalREnvironment projectDefaultEnvironment)
void	REnvironment.setRExecutablePath(Path RExecutablePath)
void	REnvironment.setRScriptExecutablePath(Path RScriptExecutablePath)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.r.algorithms

Methods in org.hkijena.jipipe.plugins.r.algorithms with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeTextAnnotationMergeMode	IteratingRScriptAlgorithm.getAnnotationMergeStrategy()
JIPipeTextAnnotationMergeMode	MergingRScriptAlgorithm.getAnnotationMergeStrategy()
ImportRDatasetAlgorithm.Dataset	ImportRDatasetAlgorithm.getDataset()
OptionalREnvironment	IteratingRScriptAlgorithm.getOverrideEnvironment()
OptionalREnvironment	MergingRScriptAlgorithm.getOverrideEnvironment()
OptionalREnvironment	ImportRDatasetAlgorithm.getOverrideEnvironment()
RScriptParameter	IteratingRScriptAlgorithm.getScript()
RScriptParameter	MergingRScriptAlgorithm.getScript()
JIPipeDynamicParameterCollection	IteratingRScriptAlgorithm.getVariables()
JIPipeDynamicParameterCollection	MergingRScriptAlgorithm.getVariables()
boolean	IteratingRScriptAlgorithm.isCleanUpAfterwards()
boolean	MergingRScriptAlgorithm.isCleanUpAfterwards()
void	IteratingRScriptAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	MergingRScriptAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	IteratingRScriptAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards)
void	MergingRScriptAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards)
void	ImportRDatasetAlgorithm.setDataset(ImportRDatasetAlgorithm.Dataset dataset)
void	IteratingRScriptAlgorithm.setOverrideEnvironment(OptionalREnvironment overrideEnvironment)
void	MergingRScriptAlgorithm.setOverrideEnvironment(OptionalREnvironment overrideEnvironment)
void	ImportRDatasetAlgorithm.setOverrideEnvironment(OptionalREnvironment overrideEnvironment)
void	IteratingRScriptAlgorithm.setScript(RScriptParameter script)
void	MergingRScriptAlgorithm.setScript(RScriptParameter script)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.scene3d.model.geometries

Methods in org.hkijena.jipipe.plugins.scene3d.model.geometries with annotations of type JIPipeParameter

Modifier and Type	Method and Description
float	Scene3DSphereGeometry.getCenterX()
float	Scene3DSphereGeometry.getCenterY()
float	Scene3DSphereGeometry.getCenterZ()
Color	Scene3DLineGeometry.getColor()
Color	Scene3DSphereGeometry.getColor()
Scene3DLineGeometry.LineEndPoint	Scene3DLineGeometry.getEnd()
String	Scene3DLineGeometry.getName()
String	Scene3DSphereGeometry.getName()
float	Scene3DLineGeometry.LineEndPoint.getRadius()
float	Scene3DSphereGeometry.getRadiusX()
float	Scene3DSphereGeometry.getRadiusY()
float	Scene3DSphereGeometry.getRadiusZ()
Scene3DLineGeometry.LineEndPoint	Scene3DLineGeometry.getStart()
float	Scene3DLineGeometry.LineEndPoint.getX()
float	Scene3DLineGeometry.LineEndPoint.getY()
float	Scene3DLineGeometry.LineEndPoint.getZ()
void	Scene3DSphereGeometry.setCenterX(float centerX)
void	Scene3DSphereGeometry.setCenterY(float centerY)
void	Scene3DSphereGeometry.setCenterZ(float centerZ)
void	Scene3DLineGeometry.setColor(Color color)
void	Scene3DSphereGeometry.setColor(Color color)
void	Scene3DLineGeometry.setName(String name)
void	Scene3DSphereGeometry.setName(String name)
void	Scene3DLineGeometry.LineEndPoint.setRadius(float radius)
void	Scene3DSphereGeometry.setRadiusX(float radiusX)
void	Scene3DSphereGeometry.setRadiusY(float radiusY)
void	Scene3DSphereGeometry.setRadiusZ(float radiusZ)
void	Scene3DLineGeometry.LineEndPoint.setX(float x)
void	Scene3DLineGeometry.LineEndPoint.setY(float y)
void	Scene3DLineGeometry.LineEndPoint.setZ(float z)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.scene3d.nodes

Methods in org.hkijena.jipipe.plugins.scene3d.nodes with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeDataByMetadataExporter	ExportScene3DToColladaAlgorithm.getExporter() Deprecated.
DataExportExpressionParameter	ExportScene3DToColladaAlgorithm2.getFilePath()
Scene3DLineGeometry	CreateLineMeshAlgorithm.getGeometry()
Scene3DSphereGeometry	CreateSphereMeshAlgorithm.getGeometry()
String	GroupSceneAlgorithm.getGroupName()
Color	MaskTo3DMeshAlgorithm.getMeshColor()
Quantity.LengthUnit	MaskTo3DMeshAlgorithm.getMeshLengthUnit()
String	MaskTo3DMeshAlgorithm.getMeshName()
Path	ExportScene3DToColladaAlgorithm.getOutputDirectory() Deprecated.
boolean	MaskTo3DMeshAlgorithm.isForceMeshLengthUnit()
boolean	ExportScene3DToColladaAlgorithm.isIndexMeshes() Deprecated.
boolean	ExportScene3DToColladaAlgorithm2.isIndexMeshes()
boolean	MaskTo3DMeshAlgorithm.isPhysicalSizes()
boolean	ExportScene3DToColladaAlgorithm.isRelativeToProjectDir() Deprecated.
void	ExportScene3DToColladaAlgorithm2.setFilePath(DataExportExpressionParameter filePath)
void	MaskTo3DMeshAlgorithm.setForceMeshLengthUnit(boolean forceMeshLengthUnit)
void	GroupSceneAlgorithm.setGroupName(String groupName)
void	ExportScene3DToColladaAlgorithm.setIndexMeshes(boolean indexMeshes) Deprecated.
void	ExportScene3DToColladaAlgorithm2.setIndexMeshes(boolean indexMeshes)
void	MaskTo3DMeshAlgorithm.setMeshColor(Color meshColor)
void	MaskTo3DMeshAlgorithm.setMeshLengthUnit(Quantity.LengthUnit meshLengthUnit)
void	MaskTo3DMeshAlgorithm.setMeshName(String meshName)
void	ExportScene3DToColladaAlgorithm.setOutputDirectory(Path outputDirectory) Deprecated.
void	MaskTo3DMeshAlgorithm.setPhysicalSizes(boolean physicalSizes)
void	ExportScene3DToColladaAlgorithm.setRelativeToProjectDir(boolean relativeToProjectDir) Deprecated.

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.settings

Methods in org.hkijena.jipipe.plugins.settings with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeExpressionParameter	JIPipeDownloadsApplicationSettings.DownloadEnvironment.getArguments()
int	JIPipeGraphEditorUIApplicationSettings.getAutoHideEdgeDistanceThreshold()
double	JIPipeGraphEditorUIApplicationSettings.getAutoHideEdgeOverlapThreshold()
JIPipepGraphAutoLayoutMethod	JIPipeGraphEditorUIApplicationSettings.getAutoLayout()
int	JIPipeBackupApplicationSettings.getBackupDelay()
StringList	JIPipeNotificationUIApplicationSettings.getBlockedNotifications()
FileChooserBookmarkList	JIPipeFileChooserApplicationSettings.getBookmarks()
String	JIPipeGraphEditorUIApplicationSettings.DockLayoutSettings.getCompartmentsEditorDockLayout()
StringAndStringPairParameter.List	JIPipeGraphEditorUIApplicationSettings.DockLayoutSettings.getCompartmentsEditorDockLayoutTemplates()
OptionalPathParameter	JIPipeBackupApplicationSettings.getCustomBackupPath()
JIPipeGraphEdge.Visibility	JIPipeGraphEditorUIApplicationSettings.getDefaultEdgeVisibility()
int	JIPipeRuntimeApplicationSettings.getDefaultQuickRunThreads()
int	JIPipeRuntimeApplicationSettings.getDefaultRunThreads()
JIPipeGraphEditorUIApplicationSettings.DockLayoutSettings	JIPipeGraphEditorUIApplicationSettings.getDockLayoutSettings()
IntegerAndIntegerPairParameter.List	JIPipeGeneralDataApplicationSettings.getExportedPreviewSizes()
JIPipeDownloadsApplicationSettings.DownloadEnvironment	JIPipeDownloadsApplicationSettings.getExternalDownloaderProcess()
JIPipeFileChooserApplicationSettings.FileChooserType	JIPipeFileChooserApplicationSettings.getFileChooserType()
Path	JIPipeFileChooserApplicationSettings.getLastDataDirectory()
Path	JIPipeFileChooserApplicationSettings.getLastExternalDirectory()
Path	JIPipeFileChooserApplicationSettings.getLastParametersDirectory()
Path	JIPipeFileChooserApplicationSettings.getLastProjectsDirectory()
int	JIPipeRuntimeApplicationSettings.getLogLimit()
int	JIPipeHistoryJournalApplicationSettings.getMaxEntries()
int	JIPipeGeneralDataApplicationSettings.getMaxTableColumnSize()
JIPipeGraphEditorUIApplicationSettings.NodeSearchSettings	JIPipeGraphEditorUIApplicationSettings.getNodeSearchSettings()
StringList	JIPipeNodeTemplateApplicationSettings.getNodeTemplateDownloadRepositories()
OptionalPathParameter	JIPipeDataStorageProjectSettings.getOverrideTempDirectory()
StringList	JIPipeGraphEditorUIApplicationSettings.NodeSearchSettings.getPinnedNodes()
String	JIPipeGraphEditorUIApplicationSettings.DockLayoutSettings.getPipelineEditorDockLayout()
StringAndStringPairParameter.List	JIPipeGraphEditorUIApplicationSettings.DockLayoutSettings.getPipelineEditorDockLayoutTemplates()
int	JIPipeGeneralDataApplicationSettings.getPreviewSize()
OptionalJIPipeAuthorMetadata.List	JIPipeProjectAuthorsApplicationSettings.getProjectAuthors()
JIPipeProjectDefaultsApplicationSettings.ProjectTemplateEnum	JIPipeProjectDefaultsApplicationSettings.getProjectTemplate()
StringList	JIPipeProjectDefaultsApplicationSettings.getProjectTemplateDownloadRepositories()
OptionalIntegerParameter	JIPipeNotificationUIApplicationSettings.getShowAfterMinRuntime()
OptionalPathParameter	JIPipeRuntimeApplicationSettings.getTempDirectory()
JIPipeDesktopUITheme	JIPipeGeneralUIApplicationSettings.getTheme()
int	JIPipeGraphEditorUIApplicationSettings.getToolInfoDistance()
boolean	JIPipeGeneralUIApplicationSettings.isAddContextActionsToContextMenu()
boolean	JIPipeFileChooserApplicationSettings.isAddFileExtension()
boolean	JIPipeRuntimeApplicationSettings.isAllowCache()
boolean	JIPipeGeneralUIApplicationSettings.isAllowDefaultCollapsedParameters()
boolean	JIPipeRuntimeApplicationSettings.isAllowSkipAlgorithmsWithoutInput()
boolean	JIPipeGraphEditorUIApplicationSettings.isAskOnDeleteCompartment()
boolean	JIPipeGraphEditorUIApplicationSettings.isAskOnDeleteNode()
boolean	JIPipeGraphEditorUIApplicationSettings.isAskOnDeleteParameter()
boolean	JIPipeGraphEditorUIApplicationSettings.isAutoLayoutMovesOtherNodes()
boolean	JIPipeProjectAuthorsApplicationSettings.isAutomaticallyAddToProjects()
boolean	JIPipeGraphEditorUIApplicationSettings.isAutoMuteBySelection()
boolean	JIPipeGraphEditorUIApplicationSettings.isAutoMuteEdgesEnabled()
boolean	JIPipeGeneralDataApplicationSettings.isAutoRemoveOutdatedCachedData()
boolean	JIPipeGeneralDataApplicationSettings.isAutoSaveLastDisplay()
boolean	JIPipeGeneralDataApplicationSettings.isAutoSaveLastImporter()
boolean	JIPipeGraphEditorUIApplicationSettings.isColorSelectedNodeEdges()
boolean	JIPipeGraphEditorUIApplicationSettings.isDrawArrowHeads()
boolean	JIPipeGraphEditorUIApplicationSettings.isDrawImprovedEdges()
boolean	JIPipeGraphEditorUIApplicationSettings.isDrawLabelsOnHover()
boolean	JIPipeGraphEditorUIApplicationSettings.isDrawNodeShadows()
boolean	JIPipeGraphEditorUIApplicationSettings.isDrawOutsideEdges()
boolean	JIPipeBackupApplicationSettings.isEnableBackups()
boolean	JIPipeNotificationUIApplicationSettings.isEnableNotifications()
boolean	JIPipeDataStorageProjectSettings.isForceGlobalTempDirectory()
boolean	JIPipeGeneralDataApplicationSettings.isGenerateCachePreviews()
boolean	JIPipeGeneralDataApplicationSettings.isGenerateResultPreviews()
boolean	JIPipeExtensionApplicationSettings.isIgnorePreActivationChecks()
boolean	JIPipeGraphEditorUIApplicationSettings.isLayoutAfterAlgorithmFinder()
boolean	JIPipeGraphEditorUIApplicationSettings.isLayoutAfterConnect()
boolean	JIPipeGeneralUIApplicationSettings.isMaximizeWindows()
boolean	JIPipeGeneralUIApplicationSettings.isNeverAskOnClosingTabs()
boolean	JIPipeGraphEditorUIApplicationSettings.isNotifyInvalidDragAndDrop()
boolean	JIPipeGeneralUIApplicationSettings.isOpenDataWindowsAlwaysOnTop()
boolean	JIPipeGeneralUIApplicationSettings.isOpenUtilityWindowsAlwaysOnTop()
boolean	JIPipeRuntimeApplicationSettings.isPerProjectTempDirectory()
boolean	JIPipeDownloadsApplicationSettings.isPreferCustomDownloader()
boolean	JIPipeProjectDefaultsApplicationSettings.isRestoreTabs()
boolean	JIPipeGraphEditorUIApplicationSettings.NodeSearchSettings.isSearchFindExistingNodes()
boolean	JIPipeGraphEditorUIApplicationSettings.NodeSearchSettings.isSearchFindNewNodes()
boolean	JIPipeGraphEditorUIApplicationSettings.NodeSearchSettings.isShowDescriptions()
boolean	JIPipeGraphEditorUIApplicationSettings.NodeSearchSettings.isShowHierarchySelection()
boolean	JIPipeGeneralUIApplicationSettings.isShowIntroduction()
boolean	JIPipeNotificationUIApplicationSettings.isShowNotificationsAfterFirstStart()
boolean	JIPipeGeneralUIApplicationSettings.isShowParameterSearchBar()
boolean	JIPipeGeneralUIApplicationSettings.isShowProjectInfo()
boolean	JIPipeNotificationUIApplicationSettings.isShowRunNotifications()
boolean	JIPipeNotificationUIApplicationSettings.isShowRunOnlyIfInactive()
boolean	JIPipeTableViewerUIApplicationSettings.isShowSideBar()
boolean	JIPipeGraphEditorUIApplicationSettings.DockLayoutSettings.isShowToolbarLabels()
boolean	JIPipeGraphEditorUIApplicationSettings.isShowToolInfo()
boolean	JIPipeExtensionApplicationSettings.isSilent()
boolean	JIPipeGraphEditorUIApplicationSettings.isSwitchPanningDirection()
boolean	JIPipeGeneralUIApplicationSettings.isSwitchToProjectInfoOnUnknownProject()
boolean	JIPipeExtensionApplicationSettings.isValidateNodeTypes()
boolean	JIPipeGeneralUIApplicationSettings.isValidateOnSave()
boolean	JIPipeProjectAuthorsApplicationSettings.isWarnNoAuthors()
void	JIPipeGeneralUIApplicationSettings.setAddContextActionsToContextMenu(boolean addContextActionsToContextMenu)
void	JIPipeFileChooserApplicationSettings.setAddFileExtension(boolean addFileExtension)
void	JIPipeRuntimeApplicationSettings.setAllowCache(boolean allowCache)
void	JIPipeGeneralUIApplicationSettings.setAllowDefaultCollapsedParameters(boolean allowDefaultCollapsedParameters)
void	JIPipeRuntimeApplicationSettings.setAllowSkipAlgorithmsWithoutInput(boolean allowSkipAlgorithmsWithoutInput)
void	JIPipeDownloadsApplicationSettings.DownloadEnvironment.setArguments(JIPipeExpressionParameter arguments)
void	JIPipeGraphEditorUIApplicationSettings.setAskOnDeleteCompartment(boolean askOnDeleteCompartment)
void	JIPipeGraphEditorUIApplicationSettings.setAskOnDeleteNode(boolean askOnDeleteNode)
void	JIPipeGraphEditorUIApplicationSettings.setAskOnDeleteParameter(boolean askOnDeleteParameter)
void	JIPipeGraphEditorUIApplicationSettings.setAutoHideEdgeDistanceThreshold(int longDistanceEdgeThreshold)
void	JIPipeGraphEditorUIApplicationSettings.setAutoHideEdgeOverlapThreshold(double autoHideEdgeOverlapThreshold)
void	JIPipeGraphEditorUIApplicationSettings.setAutoLayout(JIPipepGraphAutoLayoutMethod autoLayout)
void	JIPipeGraphEditorUIApplicationSettings.setAutoLayoutMovesOtherNodes(boolean autoLayoutMovesOtherNodes)
void	JIPipeProjectAuthorsApplicationSettings.setAutomaticallyAddToProjects(boolean automaticallyAddToProjects)
void	JIPipeGraphEditorUIApplicationSettings.setAutoMuteBySelection(boolean autoMuteBySelection)
void	JIPipeGraphEditorUIApplicationSettings.setAutoMuteEdgesEnabled(boolean autoMuteEdgesEnabled)
void	JIPipeGeneralDataApplicationSettings.setAutoRemoveOutdatedCachedData(boolean autoRemoveOutdatedCachedData)
boolean	JIPipeBackupApplicationSettings.setAutoSaveDelay(int autoSaveDelay)
void	JIPipeGeneralDataApplicationSettings.setAutoSaveLastDisplay(boolean autoSaveLastDisplay)
void	JIPipeGeneralDataApplicationSettings.setAutoSaveLastImporter(boolean autoSaveLastImporter)
void	JIPipeNotificationUIApplicationSettings.setBlockedNotifications(StringList blockedNotifications)
void	JIPipeFileChooserApplicationSettings.setBookmarks(FileChooserBookmarkList bookmarks)
void	JIPipeGraphEditorUIApplicationSettings.setColorSelectedNodeEdges(boolean colorSelectedNodeEdges)
void	JIPipeGraphEditorUIApplicationSettings.DockLayoutSettings.setCompartmentsEditorDockLayout(String compartmentsEditorDockLayout)
void	JIPipeGraphEditorUIApplicationSettings.DockLayoutSettings.setCompartmentsEditorDockLayoutTemplates(StringAndStringPairParameter.List compartmentsEditorDockLayoutTemplates)
void	JIPipeBackupApplicationSettings.setCustomBackupPath(OptionalPathParameter customBackupPath)
void	JIPipeGraphEditorUIApplicationSettings.setDefaultEdgeVisibility(JIPipeGraphEdge.Visibility defaultEdgeVisibility)
boolean	JIPipeRuntimeApplicationSettings.setDefaultQuickRunThreads(int defaultTestBenchThreads) Sets the number of threads for test bench
boolean	JIPipeRuntimeApplicationSettings.setDefaultRunThreads(int defaultRunThreads) Sets the number of threads
void	JIPipeGraphEditorUIApplicationSettings.setDrawArrowHeads(boolean drawArrowHeads)
void	JIPipeGraphEditorUIApplicationSettings.setDrawImprovedEdges(boolean drawImprovedEdges)
void	JIPipeGraphEditorUIApplicationSettings.setDrawLabelsOnHover(boolean drawLabelsOnHover)
void	JIPipeGraphEditorUIApplicationSettings.setDrawNodeShadows(boolean drawNodeShadows)
void	JIPipeGraphEditorUIApplicationSettings.setDrawOutsideEdges(boolean drawOutsideEdges)
void	JIPipeBackupApplicationSettings.setEnableBackups(boolean enableBackups)
void	JIPipeNotificationUIApplicationSettings.setEnableNotifications(boolean enableNotifications)
void	JIPipeGeneralDataApplicationSettings.setExportedPreviewSizes(IntegerAndIntegerPairParameter.List exportedPreviewSizes)
void	JIPipeDownloadsApplicationSettings.setExternalDownloaderProcess(JIPipeDownloadsApplicationSettings.DownloadEnvironment externalDownloaderProcess)
void	JIPipeFileChooserApplicationSettings.setFileChooserType(JIPipeFileChooserApplicationSettings.FileChooserType fileChooserType)
void	JIPipeDataStorageProjectSettings.setForceGlobalTempDirectory(boolean forceGlobalTempDirectory)
void	JIPipeGeneralDataApplicationSettings.setGenerateCachePreviews(boolean generateCachePreviews)
void	JIPipeGeneralDataApplicationSettings.setGenerateResultPreviews(boolean generateResultPreviews)
void	JIPipeExtensionApplicationSettings.setIgnorePreActivationChecks(boolean ignorePreActivationChecks)
void	JIPipeFileChooserApplicationSettings.setLastDataDirectory(Path lastDataDirectory)
void	JIPipeFileChooserApplicationSettings.setLastExternalDirectory(Path lastExternalDirectory)
void	JIPipeFileChooserApplicationSettings.setLastParametersDirectory(Path lastParametersDirectory)
void	JIPipeFileChooserApplicationSettings.setLastProjectsDirectory(Path lastProjectsDirectory)
void	JIPipeGraphEditorUIApplicationSettings.setLayoutAfterAlgorithmFinder(boolean layoutAfterAlgorithmFinder)
void	JIPipeGraphEditorUIApplicationSettings.setLayoutAfterConnect(boolean layoutAfterConnect)
void	JIPipeRuntimeApplicationSettings.setLogLimit(int logLimit)
void	JIPipeHistoryJournalApplicationSettings.setMaxEntries(int maxEntries)
void	JIPipeGeneralUIApplicationSettings.setMaximizeWindows(boolean maximizeWindows)
void	JIPipeGeneralDataApplicationSettings.setMaxTableColumnSize(int maxTableColumnSize)
void	JIPipeGeneralUIApplicationSettings.setNeverAskOnClosingTabs(boolean neverAskOnClosingTabs)
void	JIPipeNodeTemplateApplicationSettings.setNodeTemplateDownloadRepositories(StringList projectTemplateDownloadRepositories)
void	JIPipeGraphEditorUIApplicationSettings.setNotifyInvalidDragAndDrop(boolean notifyInvalidDragAndDrop)
void	JIPipeGeneralUIApplicationSettings.setOpenDataWindowsAlwaysOnTop(boolean openDataWindowsAlwaysOnTop)
void	JIPipeGeneralUIApplicationSettings.setOpenUtilityWindowsAlwaysOnTop(boolean openUtilityWindowsAlwaysOnTop)
void	JIPipeDataStorageProjectSettings.setOverrideTempDirectory(OptionalPathParameter overrideTempDirectory)
void	JIPipeRuntimeApplicationSettings.setPerProjectTempDirectory(boolean perProjectTempDirectory)
void	JIPipeGraphEditorUIApplicationSettings.NodeSearchSettings.setPinnedNodes(StringList pinnedNodes)
void	JIPipeGraphEditorUIApplicationSettings.DockLayoutSettings.setPipelineEditorDockLayout(String pipelineEditorDockLayout)
void	JIPipeGraphEditorUIApplicationSettings.DockLayoutSettings.setPipelineEditorDockLayoutTemplates(StringAndStringPairParameter.List pipelineEditorDockLayoutTemplates)
void	JIPipeDownloadsApplicationSettings.setPreferCustomDownloader(boolean preferCustomDownloader)
void	JIPipeGeneralDataApplicationSettings.setPreviewSize(int previewSize)
void	JIPipeProjectAuthorsApplicationSettings.setProjectAuthors(OptionalJIPipeAuthorMetadata.List projectAuthors)
void	JIPipeProjectDefaultsApplicationSettings.setProjectTemplate(JIPipeProjectDefaultsApplicationSettings.ProjectTemplateEnum projectTemplate)
void	JIPipeProjectDefaultsApplicationSettings.setProjectTemplateDownloadRepositories(StringList projectTemplateDownloadRepositories)
void	JIPipeProjectDefaultsApplicationSettings.setRestoreTabs(boolean restoreTabs)
void	JIPipeGraphEditorUIApplicationSettings.NodeSearchSettings.setSearchFindExistingNodes(boolean searchFindExistingNodes)
void	JIPipeGraphEditorUIApplicationSettings.NodeSearchSettings.setSearchFindNewNodes(boolean searchFindNewNodes)
void	JIPipeNotificationUIApplicationSettings.setShowAfterMinRuntime(OptionalIntegerParameter showAfterMinRuntime)
void	JIPipeGraphEditorUIApplicationSettings.NodeSearchSettings.setShowDescriptions(boolean showDescriptions)
void	JIPipeGraphEditorUIApplicationSettings.NodeSearchSettings.setShowHierarchySelection(boolean showHierarchySelection)
void	JIPipeGeneralUIApplicationSettings.setShowIntroduction(boolean showIntroduction)
void	JIPipeNotificationUIApplicationSettings.setShowNotificationsAfterFirstStart(boolean showNotificationsAfterFirstStart)
void	JIPipeGeneralUIApplicationSettings.setShowParameterSearchBar(boolean showParameterSearchBar)
void	JIPipeGeneralUIApplicationSettings.setShowProjectInfo(boolean showProjectInfo)
void	JIPipeNotificationUIApplicationSettings.setShowRunNotifications(boolean showRunNotifications)
void	JIPipeNotificationUIApplicationSettings.setShowRunOnlyIfInactive(boolean showRunOnlyIfInactive)
void	JIPipeTableViewerUIApplicationSettings.setShowSideBar(boolean showSideBar)
void	JIPipeGraphEditorUIApplicationSettings.DockLayoutSettings.setShowToolbarLabels(boolean showToolbarLabels)
void	JIPipeGraphEditorUIApplicationSettings.setShowToolInfo(boolean showToolInfo)
void	JIPipeExtensionApplicationSettings.setSilent(boolean silent)
void	JIPipeGraphEditorUIApplicationSettings.setSwitchPanningDirection(boolean switchPanningDirection)
void	JIPipeGeneralUIApplicationSettings.setSwitchToProjectInfoOnUnknownProject(boolean switchToProjectInfoOnUnknownProject)
void	JIPipeRuntimeApplicationSettings.setTempDirectory(OptionalPathParameter tempDirectory)
void	JIPipeGeneralUIApplicationSettings.setTheme(JIPipeDesktopUITheme theme)
void	JIPipeGraphEditorUIApplicationSettings.setToolInfoDistance(int toolInfoDistance)
void	JIPipeExtensionApplicationSettings.setValidateNodeTypes(boolean validateNodeTypes)
void	JIPipeGeneralUIApplicationSettings.setValidateOnSave(boolean validateOnSave)
void	JIPipeProjectAuthorsApplicationSettings.setWarnNoAuthors(boolean warnNoAuthors)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.strings.datasources

Methods in org.hkijena.jipipe.plugins.strings.datasources with annotations of type JIPipeParameter

Modifier and Type	Method and Description
String	StringDefinitionDataSource.getValue()
boolean	ImportJsonAlgorithm.isValidateJson()
boolean	ImportXMLAlgorithm.isValidateXml()
void	ImportJsonAlgorithm.setValidateJson(boolean validateJson)
void	ImportXMLAlgorithm.setValidateXml(boolean validateXml)
void	StringDefinitionDataSource.setValue(String value)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.strings.nodes.json

Methods in org.hkijena.jipipe.plugins.strings.nodes.json with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeTextAnnotationMergeMode	AnnotateWithJsonDataAlgorithm.getAnnotationMergeMode()
JIPipeExpressionParameter	AnnotateWithJsonDataAlgorithm.Entry.getAnnotationName()
JIPipeExpressionParameter	ExtractJsonDataAsTableAlgorithm.Entry.getColumnName()
TableColumnNormalization	ExtractJsonDataAsTableAlgorithm.getColumnNormalization()
ParameterCollectionList	ExtractJsonDataAsTableAlgorithm.getEntries()
ParameterCollectionList	AnnotateWithJsonDataAlgorithm.getEntries()
JIPipeExpressionParameter	ExtractJsonDataAsTableAlgorithm.Entry.getJsonPath()
JIPipeExpressionParameter	AnnotateWithJsonDataAlgorithm.Entry.getJsonPath()
JIPipeExpressionParameter	ExtractTextFromJsonAlgorithm.getJsonPath()
void	AnnotateWithJsonDataAlgorithm.setAnnotationMergeMode(JIPipeTextAnnotationMergeMode annotationMergeMode)
void	AnnotateWithJsonDataAlgorithm.Entry.setAnnotationName(JIPipeExpressionParameter annotationName)
void	ExtractJsonDataAsTableAlgorithm.Entry.setColumnName(JIPipeExpressionParameter columnName)
void	ExtractJsonDataAsTableAlgorithm.setColumnNormalization(TableColumnNormalization columnNormalization)
void	ExtractJsonDataAsTableAlgorithm.setEntries(ParameterCollectionList entries)
void	AnnotateWithJsonDataAlgorithm.setEntries(ParameterCollectionList entries)
void	ExtractJsonDataAsTableAlgorithm.Entry.setJsonPath(JIPipeExpressionParameter jsonPath)
void	AnnotateWithJsonDataAlgorithm.Entry.setJsonPath(JIPipeExpressionParameter jsonPath)
void	ExtractTextFromJsonAlgorithm.setJsonPath(JIPipeExpressionParameter jsonPath)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.strings.nodes.text

Methods in org.hkijena.jipipe.plugins.strings.nodes.text with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeTextAnnotationMergeMode	AnnotateWithTextDataAlgorithm.getAnnotationMergeMode()
JIPipeExpressionParameter	AnnotateWithTextDataAlgorithm.Entry.getAnnotationName()
JIPipeExpressionParameter	TextDataToTableAlgorithm.Entry.getColumnName()
TableColumnNormalization	TextDataToTableAlgorithm.getColumnNormalization()
ParameterCollectionList	AnnotateWithTextDataAlgorithm.getEntries()
ParameterCollectionList	TextDataToTableAlgorithm.getEntries()
JIPipeExpressionParameter	AnnotateWithTextDataAlgorithm.Entry.getPreprocessor()
JIPipeExpressionParameter	TextDataToTableAlgorithm.Entry.getPreprocessor()
JIPipeExpressionParameter	ProcessTextDataAlgorithm.getTextProcessor()
void	AnnotateWithTextDataAlgorithm.setAnnotationMergeMode(JIPipeTextAnnotationMergeMode annotationMergeMode)
void	AnnotateWithTextDataAlgorithm.Entry.setAnnotationName(JIPipeExpressionParameter annotationName)
void	TextDataToTableAlgorithm.Entry.setColumnName(JIPipeExpressionParameter columnName)
void	TextDataToTableAlgorithm.setColumnNormalization(TableColumnNormalization columnNormalization)
void	AnnotateWithTextDataAlgorithm.setEntries(ParameterCollectionList entries)
void	TextDataToTableAlgorithm.setEntries(ParameterCollectionList entries)
void	AnnotateWithTextDataAlgorithm.Entry.setPreprocessor(JIPipeExpressionParameter preprocessor)
void	TextDataToTableAlgorithm.Entry.setPreprocessor(JIPipeExpressionParameter preprocessor)
void	ProcessTextDataAlgorithm.setTextProcessor(JIPipeExpressionParameter textProcessor)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.strings.nodes.xml

Methods in org.hkijena.jipipe.plugins.strings.nodes.xml with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeTextAnnotationMergeMode	AnnotateWithXPathDataAlgorithm.getAnnotationMergeMode()
JIPipeExpressionParameter	AnnotateWithXPathDataAlgorithm.Entry.getAnnotationName()
JIPipeExpressionParameter	ExtractXPathDataAsTableAlgorithm.Entry.getColumnName()
TableColumnNormalization	ExtractXPathDataAsTableAlgorithm.getColumnNormalization()
ParameterCollectionList	ExtractXPathDataAsTableAlgorithm.getEntries()
ParameterCollectionList	AnnotateWithXPathDataAlgorithm.getEntries()
int	PrettifyXMLAlgorithm.getIndent()
StringAndStringPairParameter.List	ExtractXPathDataAsTableAlgorithm.getNamespaceMap()
StringAndStringPairParameter.List	AnnotateWithXPathDataAlgorithm.getNamespaceMap()
StringAndStringPairParameter.List	ExtractTextFromXMLAlgorithm.getNamespaceMap()
JIPipeExpressionParameter	ExtractXPathDataAsTableAlgorithm.Entry.getxPath()
JIPipeExpressionParameter	AnnotateWithXPathDataAlgorithm.Entry.getxPath()
JIPipeExpressionParameter	ExtractTextFromXMLAlgorithm.getxPath()
void	AnnotateWithXPathDataAlgorithm.setAnnotationMergeMode(JIPipeTextAnnotationMergeMode annotationMergeMode)
void	AnnotateWithXPathDataAlgorithm.Entry.setAnnotationName(JIPipeExpressionParameter annotationName)
void	ExtractXPathDataAsTableAlgorithm.Entry.setColumnName(JIPipeExpressionParameter columnName)
void	ExtractXPathDataAsTableAlgorithm.setColumnNormalization(TableColumnNormalization columnNormalization)
void	ExtractXPathDataAsTableAlgorithm.setEntries(ParameterCollectionList entries)
void	AnnotateWithXPathDataAlgorithm.setEntries(ParameterCollectionList entries)
void	PrettifyXMLAlgorithm.setIndent(int indent)
void	ExtractXPathDataAsTableAlgorithm.setNamespaceMap(StringAndStringPairParameter.List namespaceMap)
void	AnnotateWithXPathDataAlgorithm.setNamespaceMap(StringAndStringPairParameter.List namespaceMap)
void	ExtractTextFromXMLAlgorithm.setNamespaceMap(StringAndStringPairParameter.List namespaceMap)
void	ExtractXPathDataAsTableAlgorithm.Entry.setxPath(JIPipeExpressionParameter xPath)
void	AnnotateWithXPathDataAlgorithm.Entry.setxPath(JIPipeExpressionParameter xPath)
void	ExtractTextFromXMLAlgorithm.setxPath(JIPipeExpressionParameter xPath)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.tables.nodes

Methods in org.hkijena.jipipe.plugins.tables.nodes with annotations of type JIPipeParameter

Modifier and Type	Method and Description
PythonScript	TablesFromScript.getCode()
PythonScript	ModifyTablesScript.getCode()
PythonScript	ModifyAndMergeTablesScript.getCode()
ExpressionTableColumnGeneratorProcessorParameterList	GenerateColumnAlgorithm.getColumns()
ExpressionTableColumnGeneratorProcessorParameterList	GenerateTableFromExpressionAlgorithm.getColumns()
OptionalIntegerParameter	GenerateColumnAlgorithm.getEnsureMinNumberOfRows()
StringQueryExpression	ModifyTableColumnNamesAlgorithm.getExpression()
int	GenerateTableFromExpressionAlgorithm.getGeneratedRows()
IntegratingTableColumnProcessorParameterList	IntegrateColumnsAlgorithm.getProcessorParameters()
JIPipeDynamicParameterCollection	TablesFromScript.getScriptParameters()
JIPipeDynamicParameterCollection	ModifyTablesScript.getScriptParameters()
JIPipeDynamicParameterCollection	ModifyAndMergeTablesScript.getScriptParameters()
ResultsTableDataList	DefineTablesAlgorithm.getTables()
boolean	GenerateColumnAlgorithm.isReplaceIfExists()
void	TablesFromScript.setCode(PythonScript code)
void	ModifyTablesScript.setCode(PythonScript code)
void	ModifyAndMergeTablesScript.setCode(PythonScript code)
void	GenerateColumnAlgorithm.setColumns(ExpressionTableColumnGeneratorProcessorParameterList columns)
void	GenerateTableFromExpressionAlgorithm.setColumns(ExpressionTableColumnGeneratorProcessorParameterList columns)
void	GenerateColumnAlgorithm.setEnsureMinNumberOfRows(OptionalIntegerParameter ensureMinNumberOfRows)
void	ModifyTableColumnNamesAlgorithm.setExpression(StringQueryExpression expression)
boolean	GenerateTableFromExpressionAlgorithm.setGeneratedRows(int generatedRows)
void	IntegrateColumnsAlgorithm.setProcessorParameters(IntegratingTableColumnProcessorParameterList processorParameters)
void	GenerateColumnAlgorithm.setReplaceIfExists(boolean replaceIfExists)
void	DefineTablesAlgorithm.setTables(ResultsTableDataList tables)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.tables.nodes.annotations

Methods in org.hkijena.jipipe.plugins.tables.nodes.annotations with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeTextAnnotationMergeMode	AnnotateDataWithTableValues.getAnnotationMergeMode()
JIPipeTextAnnotationMergeMode	AnnotateByTablePropertiesAlgorithm.getAnnotationMergeStrategy()
JIPipeExpressionParameter	AnnotateDataWithTableValues.AnnotationSettings.getAnnotationName()
StringQueryExpression	AddAnnotationColumnsAlgorithm.getAnnotationNameFilter()
String	AddAnnotationColumnsAlgorithm.getAnnotationPrefix()
JIPipeExpressionParameter	AnnotateDataWithTableValues.AnnotationSettings.getAnnotationValue()
OptionalTextAnnotationNameParameter	AnnotateByTablePropertiesAlgorithm.getColumnCountAnnotation()
OptionalTextAnnotationNameParameter	AnnotateByTablePropertiesAlgorithm.getColumnNamesAnnotation()
ParameterCollectionList	AnnotateDataWithTableValues.getGeneratedAnnotations()
OptionalTextAnnotationNameParameter	AnnotateByTablePropertiesAlgorithm.getRowCountAnnotation()
boolean	ConvertAnnotationTableToAnnotatedTables.isKeepAnnotationColumns()
void	AnnotateDataWithTableValues.setAnnotationMergeMode(JIPipeTextAnnotationMergeMode annotationMergeMode)
void	AnnotateByTablePropertiesAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	AnnotateDataWithTableValues.AnnotationSettings.setAnnotationName(JIPipeExpressionParameter annotationName)
void	AddAnnotationColumnsAlgorithm.setAnnotationNameFilter(StringQueryExpression annotationNameFilter)
void	AddAnnotationColumnsAlgorithm.setAnnotationPrefix(String annotationPrefix)
void	AnnotateDataWithTableValues.AnnotationSettings.setAnnotationValue(JIPipeExpressionParameter annotationValue)
void	AnnotateByTablePropertiesAlgorithm.setColumnCountAnnotation(OptionalTextAnnotationNameParameter columnCountAnnotation)
void	AnnotateByTablePropertiesAlgorithm.setColumnNamesAnnotation(OptionalTextAnnotationNameParameter columnNamesAnnotation)
void	AnnotateDataWithTableValues.setGeneratedAnnotations(ParameterCollectionList generatedAnnotations)
void	ConvertAnnotationTableToAnnotatedTables.setKeepAnnotationColumns(boolean keepAnnotationColumns)
void	AnnotateByTablePropertiesAlgorithm.setRowCountAnnotation(OptionalTextAnnotationNameParameter rowCountAnnotation)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.tables.nodes.columns

Methods in org.hkijena.jipipe.plugins.tables.nodes.columns with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeTextAnnotationMergeMode	ColumnsToAnnotationsAlgorithm.getAnnotationMergeStrategy()
TableCellValueQueryExpression	ColumnsToAnnotationsAlgorithm.getFilter()
StringQueryExpression	RemoveColumnAlgorithm.getFilters()
StringQueryExpression	ColumnToNumericAlgorithm.getFilters()
StringQueryExpression	ColumnToStringAlgorithm.getFilters()
StringList	SortTableColumnsAlgorithm.getManualOrder()
JIPipeExpressionParameter	RenameTableColumns2Algorithm.RenamingEntry.getNewName()
JIPipeExpressionParameter	ApplyExpressionToTableByColumnAlgorithm.ProcessingItem.getOutputColumnName()
JIPipeExpressionParameter	ApplyExpressionToTableByColumnAlgorithm.ProcessingItem.getOutputColumnValues()
ConvertingTableColumnProcessorParameterList	ConvertColumnsAlgorithm.getProcessorParameters()
ExpressionTableColumnProcessorParameterList	ApplyExpressionToColumnsAlgorithm.getProcessorParameters() Deprecated.
ParameterCollectionList	ApplyExpressionToTableByColumnAlgorithm.getProcessorParameters()
StringQueryExpressionAndStringPairParameter.List	RenameTableColumnsAlgorithm.getRenamingEntries() Deprecated.
ParameterCollectionList	RenameTableColumns2Algorithm.getRenamingEntries()
StringQueryExpressionAndStringPairParameter.List	RenameSingleColumnsAlgorithm.getRenamingEntries()
StringQueryExpressionAndStringQueryPairParameter.List	RenameTableColumnsToAnnotationAlgorithm.getRenamingEntries()
JIPipeTextAnnotationMergeMode	ColumnsToAnnotationsAlgorithm.getRowMergingStrategy()
StringQueryExpression	RenameTableColumns2Algorithm.RenamingEntry.getSourceColumn()
boolean	ConvertColumnsAlgorithm.isAppend()
boolean	ApplyExpressionToColumnsAlgorithm.isAppend() Deprecated.
boolean	RenameTableColumnsToAnnotationAlgorithm.isIgnoreMissingAnnotations()
boolean	RenameTableColumnsToAnnotationAlgorithm.isIgnoreMissingColumns()
boolean	ColumnToNumericAlgorithm.isOnlyIfPossible()
boolean	SortTableColumnsAlgorithm.isReverseSortOrder()
boolean	SortTableColumnsAlgorithm.isUseNaturalSortOrder()
void	ColumnsToAnnotationsAlgorithm.setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	ConvertColumnsAlgorithm.setAppend(boolean append)
void	ApplyExpressionToColumnsAlgorithm.setAppend(boolean append) Deprecated.
void	ColumnsToAnnotationsAlgorithm.setFilter(TableCellValueQueryExpression filter)
void	RemoveColumnAlgorithm.setFilters(StringQueryExpression filters)
void	ColumnToNumericAlgorithm.setFilters(StringQueryExpression filters)
void	ColumnToStringAlgorithm.setFilters(StringQueryExpression filters)
void	RenameTableColumnsToAnnotationAlgorithm.setIgnoreMissingAnnotations(boolean ignoreMissingAnnotations)
void	RenameTableColumnsToAnnotationAlgorithm.setIgnoreMissingColumns(boolean ignoreMissingColumns)
void	SortTableColumnsAlgorithm.setManualOrder(StringList manualOrder)
void	RenameTableColumns2Algorithm.RenamingEntry.setNewName(JIPipeExpressionParameter newName)
void	ColumnToNumericAlgorithm.setOnlyIfPossible(boolean onlyIfPossible)
void	ApplyExpressionToTableByColumnAlgorithm.ProcessingItem.setOutputColumnName(JIPipeExpressionParameter outputColumnName)
void	ApplyExpressionToTableByColumnAlgorithm.ProcessingItem.setOutputColumnValues(JIPipeExpressionParameter outputColumnValues)
void	ConvertColumnsAlgorithm.setProcessorParameters(ConvertingTableColumnProcessorParameterList processorParameters)
void	ApplyExpressionToColumnsAlgorithm.setProcessorParameters(ExpressionTableColumnProcessorParameterList processorParameters) Deprecated.
void	ApplyExpressionToTableByColumnAlgorithm.setProcessorParameters(ParameterCollectionList processorParameters)
void	RenameTableColumns2Algorithm.setRenamingEntries(ParameterCollectionList renamingEntries)
void	RenameTableColumnsAlgorithm.setRenamingEntries(StringQueryExpressionAndStringPairParameter.List renamingEntries) Deprecated.
void	RenameSingleColumnsAlgorithm.setRenamingEntries(StringQueryExpressionAndStringPairParameter.List renamingEntries)
void	RenameTableColumnsToAnnotationAlgorithm.setRenamingEntries(StringQueryExpressionAndStringQueryPairParameter.List renamingEntries)
void	SortTableColumnsAlgorithm.setReverseSortOrder(boolean reverseSortOrder)
void	ColumnsToAnnotationsAlgorithm.setRowMergingStrategy(JIPipeTextAnnotationMergeMode rowMergingStrategy)
void	RenameTableColumns2Algorithm.RenamingEntry.setSourceColumn(StringQueryExpression sourceColumn)
void	SortTableColumnsAlgorithm.setUseNaturalSortOrder(boolean useNaturalSortOrder)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.tables.nodes.filter

Methods in org.hkijena.jipipe.plugins.tables.nodes.filter with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeExpressionParameter	FilterTablesAlgorithm.getFilters()
JIPipeExpressionParameter	FilterTableRowsAlgorithm.getFilters()
IntegerRange	SliceTableRowsAlgorithm.getLimit()
void	FilterTablesAlgorithm.setFilters(JIPipeExpressionParameter filters)
void	FilterTableRowsAlgorithm.setFilters(JIPipeExpressionParameter filters)
void	SliceTableRowsAlgorithm.setLimit(IntegerRange limit)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.tables.nodes.merge

Methods in org.hkijena.jipipe.plugins.tables.nodes.merge with annotations of type JIPipeParameter

Modifier and Type	Method and Description
StringQueryExpression	MergeTableColumnsSimpleAlgorithm.getColumnFilter()
StringQueryExpression	MergeTableColumnsSupplementMergingAlgorithm.getColumnFilter()
StringQueryExpression	MergeTableColumnsSupplementAlgorithm.getColumnFilter()
StringQueryExpression	MergeTableColumnsSupplementMergingAlgorithm.getReferenceColumns()
StringQueryExpression	MergeTableColumnsSupplementAlgorithm.getReferenceColumns()
TableColumnNormalization	MergeTableColumnsSimpleAlgorithm.getRowNormalization()
TableColumnNormalization	MergeTableColumnsSupplementMergingAlgorithm.getRowNormalization()
TableColumnNormalization	MergeTableColumnsSupplementAlgorithm.getRowNormalization()
boolean	MergeTableColumnsSupplementMergingAlgorithm.isExtendTarget()
boolean	MergeTableColumnsSupplementAlgorithm.isExtendTarget()
boolean	MergeTableColumnsSupplementMergingAlgorithm.isRestoreOriginalAnnotations()
boolean	MergeTableColumnsSupplementMergingAlgorithm.isSkipEmptyTarget()
boolean	MergeTableColumnsSupplementAlgorithm.isSkipEmptyTarget()
void	MergeTableColumnsSimpleAlgorithm.setColumnFilter(StringQueryExpression columnFilter)
void	MergeTableColumnsSupplementMergingAlgorithm.setColumnFilter(StringQueryExpression columnFilter)
void	MergeTableColumnsSupplementAlgorithm.setColumnFilter(StringQueryExpression columnFilter)
void	MergeTableColumnsSupplementMergingAlgorithm.setExtendTarget(boolean extendTarget)
void	MergeTableColumnsSupplementAlgorithm.setExtendTarget(boolean extendTarget)
void	MergeTableColumnsSupplementMergingAlgorithm.setReferenceColumns(StringQueryExpression referenceColumns)
void	MergeTableColumnsSupplementAlgorithm.setReferenceColumns(StringQueryExpression referenceColumns)
void	MergeTableColumnsSupplementMergingAlgorithm.setRestoreOriginalAnnotations(boolean restoreOriginalAnnotations)
void	MergeTableColumnsSimpleAlgorithm.setRowNormalization(TableColumnNormalization rowNormalization)
void	MergeTableColumnsSupplementMergingAlgorithm.setRowNormalization(TableColumnNormalization rowNormalization)
void	MergeTableColumnsSupplementAlgorithm.setRowNormalization(TableColumnNormalization rowNormalization)
void	MergeTableColumnsSupplementMergingAlgorithm.setSkipEmptyTarget(boolean skipEmptyTarget)
void	MergeTableColumnsSupplementAlgorithm.setSkipEmptyTarget(boolean skipEmptyTarget)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.tables.nodes.rows

Methods in org.hkijena.jipipe.plugins.tables.nodes.rows with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeExpressionParameter	ApplyExpressionPerRowAlgorithm2.Entry.getColumnName()
StringQueryExpression	AddMissingRowsInSeriesAlgorithm.getCountingColumn()
ExpressionTableColumnGeneratorProcessorParameterList	AddMissingRowsInSeriesAlgorithm.getDefaultValues()
ParameterCollectionList	ApplyExpressionPerRowAlgorithm2.getEntries()
double	AddMissingRowsInSeriesAlgorithm.getExpectedStep()
ExpressionTableColumnGeneratorProcessorParameterList	ApplyExpressionPerRowAlgorithm.getExpressionList() Deprecated.
OptionalJIPipeExpressionParameter	AddMissingRowsInSeriesAlgorithm.getMaxCounter()
OptionalJIPipeExpressionParameter	AddMissingRowsInSeriesAlgorithm.getMinCounter()
StringQueryExpressionAndSortOrderPairParameter.List	SortTableRowsAlgorithm.getSortOrderList()
JIPipeExpressionParameter	ApplyExpressionPerRowAlgorithm2.Entry.getValue()
boolean	AddMissingRowsInSeriesAlgorithm.isIgnoreEmptyTables()
boolean	SortTableRowsAlgorithm.isReverseSortOrder()
boolean	SortTableRowsAlgorithm.isUseNaturalSortOrder()
void	ApplyExpressionPerRowAlgorithm2.Entry.setColumnName(JIPipeExpressionParameter columnName)
void	AddMissingRowsInSeriesAlgorithm.setCountingColumn(StringQueryExpression countingColumn)
void	AddMissingRowsInSeriesAlgorithm.setDefaultValues(ExpressionTableColumnGeneratorProcessorParameterList defaultValues)
void	ApplyExpressionPerRowAlgorithm2.setEntries(ParameterCollectionList entries)
boolean	AddMissingRowsInSeriesAlgorithm.setExpectedStep(double expectedStep)
void	ApplyExpressionPerRowAlgorithm.setExpressionList(ExpressionTableColumnGeneratorProcessorParameterList expressionList) Deprecated.
void	AddMissingRowsInSeriesAlgorithm.setIgnoreEmptyTables(boolean ignoreEmptyTables)
void	AddMissingRowsInSeriesAlgorithm.setMaxCounter(OptionalJIPipeExpressionParameter maxCounter)
void	AddMissingRowsInSeriesAlgorithm.setMinCounter(OptionalJIPipeExpressionParameter minCounter)
void	SortTableRowsAlgorithm.setReverseSortOrder(boolean reverseSortOrder)
void	SortTableRowsAlgorithm.setSortOrderList(StringQueryExpressionAndSortOrderPairParameter.List sortOrderList)
void	SortTableRowsAlgorithm.setUseNaturalSortOrder(boolean useNaturalSortOrder)
void	ApplyExpressionPerRowAlgorithm2.Entry.setValue(JIPipeExpressionParameter value)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.tables.nodes.split

Methods in org.hkijena.jipipe.plugins.tables.nodes.split with annotations of type JIPipeParameter

Modifier and Type	Method and Description
StringQueryExpression	SplitTableIntoColumnsAlgorithm.getColumnFilter()
StringQueryExpression	SplitTableByColumnsAlgorithm.getColumns()
OptionalStringParameter	SplitTableIntoColumnsAlgorithm.getGeneratedAnnotation()
boolean	SplitTableByColumnsAlgorithm.isAddAsAnnotations()
boolean	SplitTableIntoRowsAlgorithm.isAnnotateWithValues()
void	SplitTableByColumnsAlgorithm.setAddAsAnnotations(boolean addAsAnnotations)
void	SplitTableIntoRowsAlgorithm.setAnnotateWithValues(boolean annotateWithValues)
void	SplitTableIntoColumnsAlgorithm.setColumnFilter(StringQueryExpression columnFilter)
void	SplitTableByColumnsAlgorithm.setColumns(StringQueryExpression columns)
void	SplitTableIntoColumnsAlgorithm.setGeneratedAnnotation(OptionalStringParameter generatedAnnotation)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.tables.nodes.statistics

Methods in org.hkijena.jipipe.plugins.tables.nodes.statistics with annotations of type JIPipeParameter

Modifier and Type	Method and Description
KMeansClusteringAlgorithm.ClusteringSettings	KMeansClusteringAlgorithm.getClusteringSettings()
DBSCANClusteringAlgorithm.ClusteringSettings	DBSCANClusteringAlgorithm.getClusteringSettings()
FuzzyKMeansClusteringAlgorithm.ClusteringSettings	FuzzyKMeansClusteringAlgorithm.getClusteringSettings()
DistanceMeasures	KMeansClusteringAlgorithm.ClusteringSettings.getDistanceMeasure()
DistanceMeasures	DBSCANClusteringAlgorithm.ClusteringSettings.getDistanceMeasure()
DistanceMeasures	FuzzyKMeansClusteringAlgorithm.ClusteringSettings.getDistanceMeasure()
org.apache.commons.math3.ml.clustering.KMeansPlusPlusClusterer.EmptyClusterStrategy	KMeansClusteringAlgorithm.ClusteringSettings.getEmptyClusterStrategy()
int	DBSCANClusteringAlgorithm.getEpsilon()
double	FuzzyKMeansClusteringAlgorithm.ClusteringSettings.getEpsilon()
double	FuzzyKMeansClusteringAlgorithm.getFuzziness()
TableColumnSourceExpressionParameter.List	KMeansClusteringAlgorithm.getInputColumns()
TableColumnSourceExpressionParameter.List	DBSCANClusteringAlgorithm.getInputColumns()
TableColumnSourceExpressionParameter.List	FuzzyKMeansClusteringAlgorithm.getInputColumns()
int	KMeansClusteringAlgorithm.getK()
int	FuzzyKMeansClusteringAlgorithm.getK()
int	KMeansClusteringAlgorithm.ClusteringSettings.getMaxIterations()
int	DBSCANClusteringAlgorithm.ClusteringSettings.getMaxIterations()
int	FuzzyKMeansClusteringAlgorithm.ClusteringSettings.getMaxIterations()
String	FuzzyKMeansClusteringAlgorithm.OutputSettings.getMembershipPrefix()
int	DBSCANClusteringAlgorithm.getMinNumPoints()
int	KMeansClusteringAlgorithm.getNumTrials()
OptionalStringParameter	KMeansClusteringAlgorithm.OutputSettings.getOutputColumnClusterId()
OptionalStringParameter	DBSCANClusteringAlgorithm.OutputSettings.getOutputColumnClusterId()
OptionalStringParameter	FuzzyKMeansClusteringAlgorithm.OutputSettings.getOutputColumnClusterId()
OptionalStringParameter	KMeansClusteringAlgorithm.OutputSettings.getOutputColumnClusterSize()
OptionalStringParameter	DBSCANClusteringAlgorithm.OutputSettings.getOutputColumnClusterSize()
OptionalStringParameter	FuzzyKMeansClusteringAlgorithm.OutputSettings.getOutputColumnClusterSize()
OptionalStringParameter	KMeansClusteringAlgorithm.OutputSettings.getOutputColumnDistanceToCenter()
OptionalStringParameter	FuzzyKMeansClusteringAlgorithm.OutputSettings.getOutputColumnDistanceToCenter()
KMeansClusteringAlgorithm.OutputSettings	KMeansClusteringAlgorithm.getOutputSettings()
DBSCANClusteringAlgorithm.OutputSettings	DBSCANClusteringAlgorithm.getOutputSettings()
FuzzyKMeansClusteringAlgorithm.OutputSettings	FuzzyKMeansClusteringAlgorithm.getOutputSettings()
void	KMeansClusteringAlgorithm.ClusteringSettings.setDistanceMeasure(DistanceMeasures distanceMeasure)
void	DBSCANClusteringAlgorithm.ClusteringSettings.setDistanceMeasure(DistanceMeasures distanceMeasure)
void	FuzzyKMeansClusteringAlgorithm.ClusteringSettings.setDistanceMeasure(DistanceMeasures distanceMeasure)
void	KMeansClusteringAlgorithm.ClusteringSettings.setEmptyClusterStrategy(org.apache.commons.math3.ml.clustering.KMeansPlusPlusClusterer.EmptyClusterStrategy emptyClusterStrategy)
void	FuzzyKMeansClusteringAlgorithm.ClusteringSettings.setEpsilon(double epsilon)
void	DBSCANClusteringAlgorithm.setEpsilon(int epsilon)
void	FuzzyKMeansClusteringAlgorithm.setFuzziness(double fuzziness)
void	KMeansClusteringAlgorithm.setInputColumns(TableColumnSourceExpressionParameter.List inputColumns)
void	DBSCANClusteringAlgorithm.setInputColumns(TableColumnSourceExpressionParameter.List inputColumns)
void	FuzzyKMeansClusteringAlgorithm.setInputColumns(TableColumnSourceExpressionParameter.List inputColumns)
void	KMeansClusteringAlgorithm.setK(int k)
void	FuzzyKMeansClusteringAlgorithm.setK(int k)
void	KMeansClusteringAlgorithm.ClusteringSettings.setMaxIterations(int maxIterations)
void	DBSCANClusteringAlgorithm.ClusteringSettings.setMaxIterations(int maxIterations)
void	FuzzyKMeansClusteringAlgorithm.ClusteringSettings.setMaxIterations(int maxIterations)
void	FuzzyKMeansClusteringAlgorithm.OutputSettings.setMembershipPrefix(String membershipPrefix)
void	DBSCANClusteringAlgorithm.setMinNumPoints(int minNumPoints)
void	KMeansClusteringAlgorithm.setNumTrials(int numTrials)
void	KMeansClusteringAlgorithm.OutputSettings.setOutputColumnClusterId(OptionalStringParameter outputColumnClusterId)
void	DBSCANClusteringAlgorithm.OutputSettings.setOutputColumnClusterId(OptionalStringParameter outputColumnClusterId)
void	FuzzyKMeansClusteringAlgorithm.OutputSettings.setOutputColumnClusterId(OptionalStringParameter outputColumnClusterId)
void	KMeansClusteringAlgorithm.OutputSettings.setOutputColumnClusterSize(OptionalStringParameter outputColumnClusterSize)
void	DBSCANClusteringAlgorithm.OutputSettings.setOutputColumnClusterSize(OptionalStringParameter outputColumnClusterSize)
void	FuzzyKMeansClusteringAlgorithm.OutputSettings.setOutputColumnClusterSize(OptionalStringParameter outputColumnClusterSize)
void	KMeansClusteringAlgorithm.OutputSettings.setOutputColumnDistanceToCenter(OptionalStringParameter outputColumnDistanceToCenter)
void	FuzzyKMeansClusteringAlgorithm.OutputSettings.setOutputColumnDistanceToCenter(OptionalStringParameter outputColumnDistanceToCenter)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.tables.nodes.transform

Methods in org.hkijena.jipipe.plugins.tables.nodes.transform with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeExpressionParameter	TableToHistogramAlgorithm.getAccumulationFunction() Deprecated.
ParameterCollectionList	TableToHistogramAlgorithm.getAdditionalColumns() Deprecated.
StringQueryExpression	UnMeltTableAlgorithm.getCategoryColumns()
TableColumnNormalization	UnMeltTableAlgorithm.getColumnNormalization()
TableColumnSourceExpressionParameter	TableToHistogramAlgorithm.getInputColumn() Deprecated.
TableColumnSourceExpressionParameter	TableToHistogram2Algorithm.getInputColumn()
JIPipeExpressionParameter	ApplyExpressionPerLabelAlgorithm.getIntegrationFunction()
TableColumnSourceExpressionParameter	ApplyExpressionPerLabelAlgorithm.getKeyColumn()
JIPipeExpressionParameter	UnMeltTableAlgorithm.getNewColumnName()
JIPipeExpressionParameter	TableToHistogramAlgorithm.getNumBins() Deprecated.
JIPipeExpressionParameter	TableToHistogram2Algorithm.getNumBins()
OptionalStringParameter	MeltTableAlgorithm.getOutputCategoryColumnName()
JIPipeExpressionParameter	TableToHistogramAlgorithm.getOutputColumnBinCount() Deprecated.
JIPipeExpressionParameter	TableToHistogramAlgorithm.getOutputColumnBinMax() Deprecated.
JIPipeExpressionParameter	TableToHistogramAlgorithm.getOutputColumnBinMin() Deprecated.
JIPipeExpressionParameter	TableToHistogramAlgorithm.AdditionalColumn.getOutputColumnName()
JIPipeExpressionParameter	TableToHistogram2Algorithm.OutputColumn.getOutputColumnName()
ParameterCollectionList	TableToHistogram2Algorithm.getOutputColumns()
JIPipeExpressionParameter	TableToHistogramAlgorithm.AdditionalColumn.getOutputColumnValues()
JIPipeExpressionParameter	TableToHistogram2Algorithm.OutputColumn.getOutputColumnValues()
String	ApplyExpressionPerLabelAlgorithm.getOutputKeyColumn()
String	ApplyExpressionPerLabelAlgorithm.getOutputValueColumn()
String	MeltTableAlgorithm.getOutputValueColumnName()
StringQueryExpression	UnMeltTableAlgorithm.getValueColumn()
TableColumnSourceExpressionParameter	ApplyExpressionPerLabelAlgorithm.getValueColumn()
StringQueryExpression	MeltTableAlgorithm.getValueColumns()
JIPipeExpressionParameter	TableToHistogramAlgorithm.getValueFilter() Deprecated.
JIPipeExpressionParameter	TableToHistogram2Algorithm.getValueFilter()
TableColumnSourceExpressionParameter	TableToHistogramAlgorithm.getWeightColumn() Deprecated.
TableColumnSourceExpressionParameter	TableToHistogram2Algorithm.getWeightColumn()
boolean	TableToHistogramAlgorithm.isCumulative() Deprecated.
boolean	ApplyExpressionPerLabelAlgorithm.isCumulative()
boolean	TableToHistogramAlgorithm.isNormalize() Deprecated.
boolean	ApplyExpressionPerLabelAlgorithm.isNormalize()
void	TableToHistogramAlgorithm.setAccumulationFunction(JIPipeExpressionParameter accumulationFunction) Deprecated.
void	TableToHistogramAlgorithm.setAdditionalColumns(ParameterCollectionList additionalColumns) Deprecated.
void	UnMeltTableAlgorithm.setCategoryColumns(StringQueryExpression categoryColumns)
void	UnMeltTableAlgorithm.setColumnNormalization(TableColumnNormalization columnNormalization)
void	TableToHistogramAlgorithm.setCumulative(boolean cumulative) Deprecated.
void	ApplyExpressionPerLabelAlgorithm.setCumulative(boolean cumulative)
void	TableToHistogramAlgorithm.setInputColumn(TableColumnSourceExpressionParameter inputColumn) Deprecated.
void	TableToHistogram2Algorithm.setInputColumn(TableColumnSourceExpressionParameter inputColumn)
void	ApplyExpressionPerLabelAlgorithm.setIntegrationFunction(JIPipeExpressionParameter integrationFunction)
void	ApplyExpressionPerLabelAlgorithm.setKeyColumn(TableColumnSourceExpressionParameter keyColumn)
void	UnMeltTableAlgorithm.setNewColumnName(JIPipeExpressionParameter newColumnName)
void	TableToHistogramAlgorithm.setNormalize(boolean normalize) Deprecated.
void	ApplyExpressionPerLabelAlgorithm.setNormalize(boolean normalize)
void	TableToHistogramAlgorithm.setNumBins(JIPipeExpressionParameter numBins) Deprecated.
void	TableToHistogram2Algorithm.setNumBins(JIPipeExpressionParameter numBins)
void	MeltTableAlgorithm.setOutputCategoryColumnName(OptionalStringParameter outputCategoryColumnName)
void	TableToHistogramAlgorithm.setOutputColumnBinCount(JIPipeExpressionParameter outputColumnBinCount) Deprecated.
void	TableToHistogramAlgorithm.setOutputColumnBinMax(JIPipeExpressionParameter outputColumnBinMax) Deprecated.
void	TableToHistogramAlgorithm.setOutputColumnBinMin(JIPipeExpressionParameter outputColumnBinMin) Deprecated.
void	TableToHistogramAlgorithm.AdditionalColumn.setOutputColumnName(JIPipeExpressionParameter outputColumnName)
void	TableToHistogram2Algorithm.OutputColumn.setOutputColumnName(JIPipeExpressionParameter outputColumnName)
void	TableToHistogram2Algorithm.setOutputColumns(ParameterCollectionList outputColumns)
void	TableToHistogramAlgorithm.AdditionalColumn.setOutputColumnValues(JIPipeExpressionParameter outputColumnValues)
void	TableToHistogram2Algorithm.OutputColumn.setOutputColumnValues(JIPipeExpressionParameter outputColumnValues)
void	ApplyExpressionPerLabelAlgorithm.setOutputKeyColumn(String outputKeyColumn)
void	ApplyExpressionPerLabelAlgorithm.setOutputValueColumn(String outputValueColumn)
void	MeltTableAlgorithm.setOutputValueColumnName(String outputValueColumnName)
void	UnMeltTableAlgorithm.setValueColumn(StringQueryExpression valueColumn)
void	ApplyExpressionPerLabelAlgorithm.setValueColumn(TableColumnSourceExpressionParameter valueColumn)
void	MeltTableAlgorithm.setValueColumns(StringQueryExpression valueColumns)
void	TableToHistogramAlgorithm.setValueFilter(JIPipeExpressionParameter valueFilter) Deprecated.
void	TableToHistogram2Algorithm.setValueFilter(JIPipeExpressionParameter valueFilter)
void	TableToHistogramAlgorithm.setWeightColumn(TableColumnSourceExpressionParameter weightColumn) Deprecated.
void	TableToHistogram2Algorithm.setWeightColumn(TableColumnSourceExpressionParameter weightColumn)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.tables.parameters.enums

Methods in org.hkijena.jipipe.plugins.tables.parameters.enums with annotations of type JIPipeParameter

Modifier and Type	Method and Description
ColumnContentType	TableColumnGeneratorParameter.getGeneratedType()
JIPipeDataInfoRef	TableColumnGeneratorParameter.getGeneratorType()
void	TableColumnGeneratorParameter.setGeneratedType(ColumnContentType generatedType)
void	TableColumnGeneratorParameter.setGeneratorType(JIPipeDataInfoRef generatorType)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.utils.algorithms

Methods in org.hkijena.jipipe.plugins.utils.algorithms with annotations of type JIPipeParameter

Modifier and Type	Method and Description
JIPipeDataAnnotationMergeMode	ImportJIPipeSlotFolderAlgorithm.getDataAnnotationMergeMode()
SortOrder	SortRowsByAnnotationsAlgorithm.getDefaultSortOrder()
ParameterCollectionList	SortRowsByExpressionAlgorithm.getEntries()
JIPipeExpressionParameter	RunExpressionAlgorithm.getExpression()
IntegerRange	SelectDataTableRowsAlgorithm.getLimit()
JIPipeTextAnnotationMergeMode	UsePlaceholderForMissingDataAlgorithm.getPlaceholderAnnotationMergeStrategy()
IntegerRange	IterationStepSlicer.getSliceRange()
IntegerRange	DataSlicer.getSliceRange()
SortOrder	SortRowsByExpressionAlgorithm.SortEntry.getSortOrder()
StringQueryExpressionAndSortOrderPairParameter.List	SortRowsByAnnotationsAlgorithm.getSortOrderList()
JIPipeTextAnnotationMergeMode	ImportJIPipeSlotFolderAlgorithm.getTextAnnotationMergeMode()
int	SleepAlgorithm.getTimeout()
JIPipeExpressionParameter	SortRowsByExpressionAlgorithm.SortEntry.getValue()
OptionalTextAnnotationNameParameter	RunExpressionAlgorithm.getWriteToAnnotation()
JIPipeTextAnnotationMergeMode	RunExpressionAlgorithm.getWriteToAnnotationMergeStrategy()
boolean	ToDataStringAlgorithm.isDetailedDataString()
boolean	ImportJIPipeSlotFolderAlgorithm.isIgnoreImportedDataAnnotations()
boolean	ImportJIPipeSlotFolderAlgorithm.isIgnoreImportedTextAnnotations()
boolean	ImportJIPipeSlotFolderAlgorithm.isIgnoreInputDataAnnotations()
boolean	ImportJIPipeSlotFolderAlgorithm.isIgnoreInputTextAnnotations()
void	ImportJIPipeSlotFolderAlgorithm.setDataAnnotationMergeMode(JIPipeDataAnnotationMergeMode dataAnnotationMergeMode)
void	SortRowsByAnnotationsAlgorithm.setDefaultSortOrder(SortOrder defaultSortOrder)
void	ToDataStringAlgorithm.setDetailedDataString(boolean detailedDataString)
void	SortRowsByExpressionAlgorithm.setEntries(ParameterCollectionList entries)
void	RunExpressionAlgorithm.setExpression(JIPipeExpressionParameter expression)
void	ImportJIPipeSlotFolderAlgorithm.setIgnoreImportedDataAnnotations(boolean ignoreImportedDataAnnotations)
void	ImportJIPipeSlotFolderAlgorithm.setIgnoreImportedTextAnnotations(boolean ignoreImportedTextAnnotations)
void	ImportJIPipeSlotFolderAlgorithm.setIgnoreInputDataAnnotations(boolean ignoreInputDataAnnotations)
void	ImportJIPipeSlotFolderAlgorithm.setIgnoreInputTextAnnotations(boolean ignoreInputTextAnnotations)
void	SelectDataTableRowsAlgorithm.setLimit(IntegerRange limit)
void	UsePlaceholderForMissingDataAlgorithm.setPlaceholderAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode placeholderAnnotationMergeStrategy)
void	IterationStepSlicer.setSliceRange(IntegerRange sliceRange)
void	DataSlicer.setSliceRange(IntegerRange sliceRange)
void	SortRowsByExpressionAlgorithm.SortEntry.setSortOrder(SortOrder sortOrder)
void	SortRowsByAnnotationsAlgorithm.setSortOrderList(StringQueryExpressionAndSortOrderPairParameter.List sortOrderList)
void	ImportJIPipeSlotFolderAlgorithm.setTextAnnotationMergeMode(JIPipeTextAnnotationMergeMode textAnnotationMergeMode)
void	SleepAlgorithm.setTimeout(int timeout)
void	SortRowsByExpressionAlgorithm.SortEntry.setValue(JIPipeExpressionParameter value)
void	RunExpressionAlgorithm.setWriteToAnnotation(OptionalTextAnnotationNameParameter writeToAnnotation)
void	RunExpressionAlgorithm.setWriteToAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode writeToAnnotationMergeStrategy)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.utils.algorithms.datatable

Methods in org.hkijena.jipipe.plugins.utils.algorithms.datatable with annotations of type JIPipeParameter

Modifier and Type	Method and Description
DataAnnotationQueryExpression	PullDataTableAnnotations.getDataAnnotationFilter()
DataAnnotationQueryExpression	PushDataTableAnnotations.getDataAnnotationFilter()
JIPipeDataAnnotationMergeMode	PullDataTableAnnotations.getDataAnnotationMergeMode()
JIPipeDataAnnotationMergeMode	PushDataTableAnnotations.getDataAnnotationMergeMode()
JIPipeTextAnnotationMergeMode	AnnotateWithDataTableProperties.getMergeMode()
JIPipeTextAnnotationMergeMode	ExtractTableAlgorithm.getMergeStrategy()
OptionalTextAnnotationNameParameter	AnnotateWithDataTableProperties.getNumDataAnnotationColumns()
OptionalTextAnnotationNameParameter	AnnotateWithDataTableProperties.getNumRowsAnnotation()
OptionalTextAnnotationNameParameter	AnnotateWithDataTableProperties.getNumTextAnnotationColumns()
AnnotationQueryExpression	PullDataTableAnnotations.getTextAnnotationFilter()
AnnotationQueryExpression	PushDataTableAnnotations.getTextAnnotationFilter()
JIPipeTextAnnotationMergeMode	PullDataTableAnnotations.getTextAnnotationMergeMode()
JIPipeTextAnnotationMergeMode	PushDataTableAnnotations.getTextAnnotationMergeMode()
boolean	ExtractTableAlgorithm.isMergeAnnotations()
void	PullDataTableAnnotations.setDataAnnotationFilter(DataAnnotationQueryExpression dataAnnotationFilter)
void	PushDataTableAnnotations.setDataAnnotationFilter(DataAnnotationQueryExpression dataAnnotationFilter)
void	PullDataTableAnnotations.setDataAnnotationMergeMode(JIPipeDataAnnotationMergeMode dataAnnotationMergeMode)
void	PushDataTableAnnotations.setDataAnnotationMergeMode(JIPipeDataAnnotationMergeMode dataAnnotationMergeMode)
void	ExtractTableAlgorithm.setMergeAnnotations(boolean mergeAnnotations)
void	AnnotateWithDataTableProperties.setMergeMode(JIPipeTextAnnotationMergeMode mergeMode)
void	ExtractTableAlgorithm.setMergeStrategy(JIPipeTextAnnotationMergeMode mergeStrategy)
void	AnnotateWithDataTableProperties.setNumDataAnnotationColumns(OptionalTextAnnotationNameParameter numDataAnnotationColumns)
void	AnnotateWithDataTableProperties.setNumRowsAnnotation(OptionalTextAnnotationNameParameter numRowsAnnotation)
void	AnnotateWithDataTableProperties.setNumTextAnnotationColumns(OptionalTextAnnotationNameParameter numTextAnnotationColumns)
void	PullDataTableAnnotations.setTextAnnotationFilter(AnnotationQueryExpression textAnnotationFilter)
void	PushDataTableAnnotations.setTextAnnotationFilter(AnnotationQueryExpression textAnnotationFilter)
void	PullDataTableAnnotations.setTextAnnotationMergeMode(JIPipeTextAnnotationMergeMode textAnnotationMergeMode)
void	PushDataTableAnnotations.setTextAnnotationMergeMode(JIPipeTextAnnotationMergeMode textAnnotationMergeMode)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.utils.algorithms.distribute

Methods in org.hkijena.jipipe.plugins.utils.algorithms.distribute with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OutputSlotMapParameterCollection	DistributeDataRandomlyByCountAlgorithm.getCounts()
OutputSlotMapParameterCollection	DistributeDataRandomlyByPercentageAlgorithm.getWeights()

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.utils.algorithms.iterationsteps

Methods in org.hkijena.jipipe.plugins.utils.algorithms.iterationsteps with annotations of type JIPipeParameter

Modifier and Type	Method and Description
String	CrasherAlgorithm.getErrorExplanation()
String	CrasherAlgorithm.getErrorSolution()
String	CrasherAlgorithm.getErrorTitle()
JIPipeExpressionParameter	SingleIterationStepCheckerAlgorithm.getFilter()
JIPipeExpressionParameter	MultiIterationStepCheckerAlgorithm.getFilter()
OptionalTextAnnotationNameParameter	SingleIterationStepCheckerAlgorithm.getIterationStepIndexAnnotation()
OptionalTextAnnotationNameParameter	MultiIterationStepCheckerAlgorithm.getIterationStepIndexAnnotation()
boolean	SingleIterationStepCheckerAlgorithm.isEnableFilter()
boolean	MultiIterationStepCheckerAlgorithm.isEnableFilter()
boolean	SingleIterationStepCheckerAlgorithm.isKeepOriginalAnnotations()
boolean	MultiIterationStepCheckerAlgorithm.isKeepOriginalAnnotations()
void	SingleIterationStepCheckerAlgorithm.setEnableFilter(boolean enableFilter)
void	MultiIterationStepCheckerAlgorithm.setEnableFilter(boolean enableFilter)
void	CrasherAlgorithm.setErrorExplanation(String errorExplanation)
void	CrasherAlgorithm.setErrorSolution(String errorSolution)
void	CrasherAlgorithm.setErrorTitle(String errorTitle)
void	SingleIterationStepCheckerAlgorithm.setFilter(JIPipeExpressionParameter filter)
void	MultiIterationStepCheckerAlgorithm.setFilter(JIPipeExpressionParameter filter)
void	SingleIterationStepCheckerAlgorithm.setIterationStepIndexAnnotation(OptionalTextAnnotationNameParameter iterationStepIndexAnnotation)
void	MultiIterationStepCheckerAlgorithm.setIterationStepIndexAnnotation(OptionalTextAnnotationNameParameter iterationStepIndexAnnotation)
void	SingleIterationStepCheckerAlgorithm.setKeepOriginalAnnotations(boolean keepOriginalAnnotations)
void	MultiIterationStepCheckerAlgorithm.setKeepOriginalAnnotations(boolean keepOriginalAnnotations)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.utils.algorithms.meta

Methods in org.hkijena.jipipe.plugins.utils.algorithms.meta with annotations of type JIPipeParameter

Modifier and Type	Method and Description
String	GetJIPipeSlotFolderAlgorithm.getCompartmentId()
String	GetJIPipeSlotFolderAlgorithm.getNodeId()
InputSlotMapParameterCollection	PathsToJIPipeProjectParametersAlgorithm.getParameterKeyAssignments()
Path	RunJIPipeProjectAlgorithm.getProjectFile()
String	GetJIPipeSlotFolderAlgorithm.getSlotName()
OptionalIntegerParameter	RunJIPipeProjectAlgorithm.getThreads()
boolean	RunJIPipeProjectAlgorithm.isIgnoreValidation()
void	GetJIPipeSlotFolderAlgorithm.setCompartmentId(String compartmentId)
void	RunJIPipeProjectAlgorithm.setIgnoreValidation(boolean ignoreValidation)
void	GetJIPipeSlotFolderAlgorithm.setNodeId(String nodeId)
void	RunJIPipeProjectAlgorithm.setProjectFile(Path projectFile)
void	GetJIPipeSlotFolderAlgorithm.setSlotName(String slotName)
void	RunJIPipeProjectAlgorithm.setThreads(OptionalIntegerParameter threads)

Uses of JIPipeParameter in org.hkijena.jipipe.plugins.utils.algorithms.processes

Methods in org.hkijena.jipipe.plugins.utils.algorithms.processes with annotations of type JIPipeParameter

Modifier and Type	Method and Description
OptionalJIPipeExpressionParameter	RunProcessMergingAlgorithm.getOverrideArguments()
OptionalJIPipeExpressionParameter	RunProcessIteratingAlgorithm.getOverrideArguments()
ProcessEnvironment	RunProcessMergingAlgorithm.getProcessEnvironment()
ProcessEnvironment	RunProcessIteratingAlgorithm.getProcessEnvironment()
boolean	RunProcessMergingAlgorithm.isCleanUpAfterwards()
boolean	RunProcessIteratingAlgorithm.isCleanUpAfterwards()
boolean	RunProcessMergingAlgorithm.isOutputOutputFolder()
boolean	RunProcessIteratingAlgorithm.isOutputOutputFolder()
void	RunProcessMergingAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards)
void	RunProcessIteratingAlgorithm.setCleanUpAfterwards(boolean cleanUpAfterwards)
void	RunProcessMergingAlgorithm.setOutputOutputFolder(boolean outputOutputFolder)
void	RunProcessIteratingAlgorithm.setOutputOutputFolder(boolean outputOutputFolder)
void	RunProcessMergingAlgorithm.setOverrideArguments(OptionalJIPipeExpressionParameter overrideArguments)
void	RunProcessIteratingAlgorithm.setOverrideArguments(OptionalJIPipeExpressionParameter overrideArguments)
void	RunProcessMergingAlgorithm.setProcessEnvironment(ProcessEnvironment processEnvironment)
void	RunProcessIteratingAlgorithm.setProcessEnvironment(ProcessEnvironment processEnvironment)