org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi

Class CropToRoiAlgorithm

java.lang.Object

org.hkijena.jipipe.api.parameters.AbstractJIPipeParameterCollection

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.algorithm.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.algorithm.JIPipeIteratingAlgorithm

org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.CropToRoiAlgorithm

All Implemented Interfaces:

JIPipeSlotConfiguration.SlotConfigurationChangedEventListener, JIPipeFunctionallyComparable, JIPipeIterationStepAlgorithm, JIPipeAdaptiveParametersAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection, JIPipeParameterCollection.ParameterChangedEventListener, JIPipeParameterCollection.ParameterStructureChangedEventListener, JIPipeParameterCollection.ParameterUIChangedEventListener, JIPipeValidatable

public class CropToRoiAlgorithm
extends JIPipeIteratingAlgorithm

Nested Class Summary

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.BaseDirectoryChangedEventEmitter, JIPipeGraphNode.BaseDirectoryChangedEventListener, JIPipeGraphNode.NodeSlotsChangedEvent, JIPipeGraphNode.NodeSlotsChangedEventEmitter, JIPipeGraphNode.NodeSlotsChangedEventListener, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterChangedEventEmitter, JIPipeParameterCollection.ParameterChangedEventListener, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEventEmitter, JIPipeParameterCollection.ParameterStructureChangedEventListener, JIPipeParameterCollection.ParameterUIChangedEvent, JIPipeParameterCollection.ParameterUIChangedEventEmitter, JIPipeParameterCollection.ParameterUIChangedEventListener

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.algorithm.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
CropToRoiAlgorithm(CropToRoiAlgorithm other)
CropToRoiAlgorithm(JIPipeNodeInfo info)

Method Summary

Modifier and Type	Method and Description
OptionalTextAnnotationNameParameter	getAnnotationBoundingHeight()
OptionalTextAnnotationNameParameter	getAnnotationBoundingWidth()
OptionalTextAnnotationNameParameter	getAnnotationC()
JIPipeTextAnnotationMergeMode	getAnnotationMergeStrategy()
OptionalTextAnnotationNameParameter	getAnnotationT()
OptionalTextAnnotationNameParameter	getAnnotationX()
OptionalTextAnnotationNameParameter	getAnnotationY()
OptionalTextAnnotationNameParameter	getAnnotationZ()
boolean	isCropC()
boolean	isCropT()
boolean	isCropXY()
boolean	isCropZ()
protected void	runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Runs code on one data row
void	setAnnotationBoundingHeight(OptionalTextAnnotationNameParameter annotationBoundingHeight)
void	setAnnotationBoundingWidth(OptionalTextAnnotationNameParameter annotationBoundingWidth)
void	setAnnotationC(OptionalTextAnnotationNameParameter annotationC)
void	setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)
void	setAnnotationT(OptionalTextAnnotationNameParameter annotationT)
void	setAnnotationX(OptionalTextAnnotationNameParameter annotationX)
void	setAnnotationY(OptionalTextAnnotationNameParameter annotationY)
void	setAnnotationZ(OptionalTextAnnotationNameParameter annotationZ)
void	setCropC(boolean cropC)
void	setCropT(boolean cropT)
void	setCropXY(boolean cropXY)
void	setCropZ(boolean cropZ)

Methods inherited from class org.hkijena.jipipe.api.nodes.algorithm.JIPipeIteratingAlgorithm

createUIInputSlotIconDescriptionMenuItems, generateDataBatchesGenerationResult, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getLocalParallelizationNumThreads, getParallelizationBatchSize, isAllowEmptyIterationStep, isParameterUIVisible, isParameterUIVisible, runParameterSet, runPassThrough, setLocalParallelizationNumThreads, supportsParallelization

Methods inherited from class org.hkijena.jipipe.api.nodes.algorithm.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, getUIInputSlotIcon, getUIInputSlotIconBaseDimensions, onParameterChanged, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, canPassThrough, functionallyEquals, getDefaultCustomExpressionVariables, getRuntimePartition, isEnabled, isEnableDefaultCustomExpressionVariables, isPassThrough, isPostprocessor, isPreprocessor, isSkipped, loadExample, onDeserialized, reportValidity, runPassThrough, setEnabled, setPassThrough, setRuntimePartition, setSkipped

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

archiveTo, canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, emitNodeSlotsChangedEvent, fromJson, getAliasIdInParentGraph, getBaseDirectory, getBaseDirectoryChangedEventEmitter, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getCustomName, getDependencies, getDisplayName, getEnvironmentDependencies, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getName, getNewScratch, getNodeSlotsChangedEventEmitter, getNodeUILocationPerViewModePerCompartment, getNodeUILocationWithin, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProject, getProjectCompartment, getProjectDataDirs, getProjectDirectory, getRuntimeProject, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getTextDescription, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isUiLocked, isVisibleIn, onSlotConfigurationChanged, renderInputSlots, renderOutputSlots, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setNodeUILocationPerViewModePerCompartment, setNodeUILocationWithin, setNodeUILocationWithin, setParentGraph, setProjectDirectory, setRuntimeProject, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, setUiLocked, toggleSlot, toJson, updateGraphNodeSlots

Methods inherited from class org.hkijena.jipipe.api.parameters.AbstractJIPipeParameterCollection

getParameterChangedEventEmitter, getParameterStructureChangedEventEmitter, getParameterUIChangedEventEmitter, onParameterStructureChanged, onParameterUIChanged, registerSubParameter, registerSubParameters

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.nodes.iterationstep.JIPipeIterationStepAlgorithm

generateDataBatchesDryRun

Methods inherited from interface org.hkijena.jipipe.api.nodes.JIPipeAdaptiveParametersAlgorithm

installUIOverrideParameterEditor, installUIParameterOptions

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

deserializeFromJsonNode, emitParameterChangedEvent, emitParameterStructureChangedEvent, emitParameterUIChangedEvent, getContextActions, getParameter, getParameterAccess, getParameterChangedEventEmitter, getParameterStructureChangedEventEmitter, getParameterUIChangedEventEmitter, serializeToJsonFile, serializeToJsonGenerator, serializeToJsonString, setParameter

Methods inherited from interface org.hkijena.jipipe.api.validation.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection.ParameterUIChangedEventListener

onParameterUIChanged

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection.ParameterStructureChangedEventListener

onParameterStructureChanged

Constructor Detail

CropToRoiAlgorithm

public CropToRoiAlgorithm(JIPipeNodeInfo info)

CropToRoiAlgorithm

public CropToRoiAlgorithm(CropToRoiAlgorithm other)

Method Detail

runIteration

protected void runIteration(JIPipeSingleIterationStep iterationStep,
                            JIPipeIterationContext iterationContext,
                            JIPipeGraphNodeRunContext runContext,
                            JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeIteratingAlgorithm

Runs code on one data row

Specified by:

runIteration in class JIPipeIteratingAlgorithm

Parameters:

iterationStep - The data interface

iterationContext - The iteration context

runContext - the run context

progressInfo - the progress info from the run

isCropXY

public boolean isCropXY()

setCropXY

public void setCropXY(boolean cropXY)

isCropZ

public boolean isCropZ()

setCropZ

public void setCropZ(boolean cropZ)

isCropC

public boolean isCropC()

setCropC

public void setCropC(boolean cropC)

isCropT

public boolean isCropT()

setCropT

public void setCropT(boolean cropT)

getAnnotationX

public OptionalTextAnnotationNameParameter getAnnotationX()

setAnnotationX

public void setAnnotationX(OptionalTextAnnotationNameParameter annotationX)

getAnnotationY

public OptionalTextAnnotationNameParameter getAnnotationY()

setAnnotationY

public void setAnnotationY(OptionalTextAnnotationNameParameter annotationY)

getAnnotationZ

public OptionalTextAnnotationNameParameter getAnnotationZ()

setAnnotationZ

public void setAnnotationZ(OptionalTextAnnotationNameParameter annotationZ)

getAnnotationC

public OptionalTextAnnotationNameParameter getAnnotationC()

setAnnotationC

public void setAnnotationC(OptionalTextAnnotationNameParameter annotationC)

getAnnotationT

public OptionalTextAnnotationNameParameter getAnnotationT()

setAnnotationT

public void setAnnotationT(OptionalTextAnnotationNameParameter annotationT)

getAnnotationBoundingWidth

public OptionalTextAnnotationNameParameter getAnnotationBoundingWidth()

setAnnotationBoundingWidth

public void setAnnotationBoundingWidth(OptionalTextAnnotationNameParameter annotationBoundingWidth)

getAnnotationBoundingHeight

public OptionalTextAnnotationNameParameter getAnnotationBoundingHeight()

setAnnotationBoundingHeight

public void setAnnotationBoundingHeight(OptionalTextAnnotationNameParameter annotationBoundingHeight)

getAnnotationMergeStrategy

public JIPipeTextAnnotationMergeMode getAnnotationMergeStrategy()

setAnnotationMergeStrategy

public void setAnnotationMergeStrategy(JIPipeTextAnnotationMergeMode annotationMergeStrategy)