org.hkijena.jipipe.plugins.imagejalgorithms.nodes.colocalization

Class Coloc2Node.Settings

java.lang.Object

org.hkijena.jipipe.api.parameters.AbstractJIPipeParameterCollection

org.hkijena.jipipe.plugins.imagejalgorithms.nodes.colocalization.Coloc2Node.Settings

All Implemented Interfaces:

JIPipeParameterCollection, JIPipeParameterCollection.ParameterChangedEventListener, JIPipeParameterCollection.ParameterStructureChangedEventListener, JIPipeParameterCollection.ParameterUIChangedEventListener

Enclosing class:

Coloc2Node

public static class Coloc2Node.Settings
extends AbstractJIPipeParameterCollection

Nested Class Summary

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterChangedEventEmitter, JIPipeParameterCollection.ParameterChangedEventListener, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEventEmitter, JIPipeParameterCollection.ParameterStructureChangedEventListener, JIPipeParameterCollection.ParameterUIChangedEvent, JIPipeParameterCollection.ParameterUIChangedEventEmitter, JIPipeParameterCollection.ParameterUIChangedEventListener

Constructor Summary

Constructors

Constructor and Description
Settings()
Settings(Coloc2Node.Settings other)

Method Summary

Modifier and Type	Method and Description
int	getCostesRandomizations()
int	getPsf()
sc.fiji.coloc.algorithms.AutoThresholdRegression.Implementation	getThresholdRegression()
boolean	isCostesSignificanceTest()
boolean	isIntensityHistogram2D()
boolean	isKendallTauRankCorrelation()
boolean	isLiHistogramChannel1()
boolean	isLiHistogramChannel2()
boolean	isLiICQ()
boolean	isMandersCorrelation()
boolean	isSpearmanRankCorrelation()
void	setCostesRandomizations(int costesRandomizations)
void	setCostesSignificanceTest(boolean costesSignificanceTest)
void	setIntensityHistogram2D(boolean intensityHistogram2D)
void	setKendallTauRankCorrelation(boolean kendallTauRankCorrelation)
void	setLiHistogramChannel1(boolean liHistogramChannel1)
void	setLiHistogramChannel2(boolean liHistogramChannel2)
void	setLiICQ(boolean liICQ)
void	setMandersCorrelation(boolean mandersCorrelation)
void	setPsf(int psf)
void	setSpearmanRankCorrelation(boolean spearmanRankCorrelation)
void	setThresholdRegression(sc.fiji.coloc.algorithms.AutoThresholdRegression.Implementation thresholdRegression)

Methods inherited from class org.hkijena.jipipe.api.parameters.AbstractJIPipeParameterCollection

getParameterChangedEventEmitter, getParameterStructureChangedEventEmitter, getParameterUIChangedEventEmitter, onParameterChanged, onParameterStructureChanged, onParameterUIChanged, registerSubParameter, registerSubParameters

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

deserializeFromJsonNode, emitParameterChangedEvent, emitParameterStructureChangedEvent, emitParameterUIChangedEvent, getContextActions, getParameter, getParameterAccess, installUIOverrideParameterEditor, installUIParameterOptions, isParameterUIVisible, isParameterUIVisible, serializeToJsonFile, serializeToJsonGenerator, serializeToJsonString, setParameter

Constructor Detail

Settings

public Settings()

Settings

public Settings(Coloc2Node.Settings other)

Method Detail

getThresholdRegression

public sc.fiji.coloc.algorithms.AutoThresholdRegression.Implementation getThresholdRegression()

setThresholdRegression

public void setThresholdRegression(sc.fiji.coloc.algorithms.AutoThresholdRegression.Implementation thresholdRegression)

isLiHistogramChannel1

public boolean isLiHistogramChannel1()

setLiHistogramChannel1

public void setLiHistogramChannel1(boolean liHistogramChannel1)

isLiHistogramChannel2

public boolean isLiHistogramChannel2()

setLiHistogramChannel2

public void setLiHistogramChannel2(boolean liHistogramChannel2)

isLiICQ

public boolean isLiICQ()

setLiICQ

public void setLiICQ(boolean liICQ)

isSpearmanRankCorrelation

public boolean isSpearmanRankCorrelation()

setSpearmanRankCorrelation

public void setSpearmanRankCorrelation(boolean spearmanRankCorrelation)

isMandersCorrelation

public boolean isMandersCorrelation()

setMandersCorrelation

public void setMandersCorrelation(boolean mandersCorrelation)

isKendallTauRankCorrelation

public boolean isKendallTauRankCorrelation()

setKendallTauRankCorrelation

public void setKendallTauRankCorrelation(boolean kendallTauRankCorrelation)

isIntensityHistogram2D

public boolean isIntensityHistogram2D()

setIntensityHistogram2D

public void setIntensityHistogram2D(boolean intensityHistogram2D)

isCostesSignificanceTest

public boolean isCostesSignificanceTest()

setCostesSignificanceTest

public void setCostesSignificanceTest(boolean costesSignificanceTest)

getPsf

public int getPsf()

setPsf

public void setPsf(int psf)

getCostesRandomizations

public int getCostesRandomizations()

setCostesRandomizations

public void setCostesRandomizations(int costesRandomizations)