org.hkijena.jipipe.plugins.ijfilaments.nodes.modify

Class ConnectVerticesFastAlgorithm

java.lang.Object

org.hkijena.jipipe.api.parameters.AbstractJIPipeParameterCollection

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.algorithm.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.algorithm.JIPipeIteratingAlgorithm

org.hkijena.jipipe.plugins.ijfilaments.nodes.modify.ConnectVerticesFastAlgorithm

All Implemented Interfaces:

JIPipeSlotConfiguration.SlotConfigurationChangedEventListener, JIPipeFunctionallyComparable, JIPipeIterationStepAlgorithm, JIPipeAdaptiveParametersAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection, JIPipeParameterCollection.ParameterChangedEventListener, JIPipeParameterCollection.ParameterStructureChangedEventListener, JIPipeParameterCollection.ParameterUIChangedEventListener, JIPipeValidatable

public class ConnectVerticesFastAlgorithm
extends JIPipeIteratingAlgorithm

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	ConnectVerticesFastAlgorithm.EdgeCandidate

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.BaseDirectoryChangedEventEmitter, JIPipeGraphNode.BaseDirectoryChangedEventListener, JIPipeGraphNode.NodeSlotsChangedEvent, JIPipeGraphNode.NodeSlotsChangedEventEmitter, JIPipeGraphNode.NodeSlotsChangedEventListener, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterChangedEventEmitter, JIPipeParameterCollection.ParameterChangedEventListener, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEventEmitter, JIPipeParameterCollection.ParameterStructureChangedEventListener, JIPipeParameterCollection.ParameterUIChangedEvent, JIPipeParameterCollection.ParameterUIChangedEventEmitter, JIPipeParameterCollection.ParameterUIChangedEventListener

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.algorithm.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
ConnectVerticesFastAlgorithm(ConnectVerticesFastAlgorithm other)
ConnectVerticesFastAlgorithm(JIPipeNodeInfo info)

Method Summary

Modifier and Type	Method and Description
Vector2iParameter	getCandidateVertexDegreeLimit()
Vector2dParameter	getCandidateVertexValueLimit()
Vector2dParameter	getLengthRange()
OptionalIntegerParameter	getLimitConnections()
SortOrder	getLimitConnectionsLengthSortOrder()
OptionalColorParameter	getNewEdgeColor()
StringAndStringPairParameter.List	getNewEdgeMetadata()
OptionalJIPipeExpressionParameter	getSourceVertexFilter()
OptionalJIPipeExpressionParameter	getTargetVertexFilter()
boolean	isConnectAcrossC()
boolean	isConnectAcrossT()
boolean	isEnable3D()
boolean	isEnforceEdgesWithinMask()
boolean	isIgnoreIfHasPath()
boolean	isIgnoreLimitConnectionsForSource()
boolean	isIgnoreLimitConnectionsForTarget()
protected void	runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Runs code on one data row
void	setCandidateVertexDegreeLimit(Vector2iParameter candidateVertexDegreeLimit)
void	setCandidateVertexValueLimit(Vector2dParameter candidateVertexValueLimit)
void	setConnectAcrossC(boolean connectAcrossC)
void	setConnectAcrossT(boolean connectAcrossT)
void	setEnable3D(boolean enable3D)
void	setEnforceEdgesWithinMask(boolean enforceEdgesWithinMask)
void	setIgnoreIfHasPath(boolean ignoreIfHasPath)
void	setIgnoreLimitConnectionsForSource(boolean ignoreLimitConnectionsForSource)
void	setIgnoreLimitConnectionsForTarget(boolean ignoreLimitConnectionsForTarget)
void	setLengthRange(Vector2dParameter lengthRange)
void	setLimitConnections(OptionalIntegerParameter limitConnections)
void	setLimitConnectionsLengthSortOrder(SortOrder limitConnectionsLengthSortOrder)
void	setNewEdgeColor(OptionalColorParameter newEdgeColor)
void	setNewEdgeMetadata(StringAndStringPairParameter.List newEdgeMetadata)
void	setSourceVertexFilter(OptionalJIPipeExpressionParameter sourceVertexFilter)
void	setTargetVertexFilter(OptionalJIPipeExpressionParameter targetVertexFilter)

Methods inherited from class org.hkijena.jipipe.api.nodes.algorithm.JIPipeIteratingAlgorithm

createUIInputSlotIconDescriptionMenuItems, generateDataBatchesGenerationResult, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getLocalParallelizationNumThreads, getParallelizationBatchSize, isAllowEmptyIterationStep, isParameterUIVisible, isParameterUIVisible, runParameterSet, runPassThrough, setLocalParallelizationNumThreads, supportsParallelization

Methods inherited from class org.hkijena.jipipe.api.nodes.algorithm.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, getUIInputSlotIcon, getUIInputSlotIconBaseDimensions, onParameterChanged, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, canPassThrough, functionallyEquals, getDefaultCustomExpressionVariables, getRuntimePartition, isEnabled, isEnableDefaultCustomExpressionVariables, isPassThrough, isPostprocessor, isPreprocessor, isSkipped, loadExample, onDeserialized, reportValidity, runPassThrough, setEnabled, setPassThrough, setRuntimePartition, setSkipped

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

archiveTo, canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, emitNodeSlotsChangedEvent, fromJson, getAliasIdInParentGraph, getBaseDirectory, getBaseDirectoryChangedEventEmitter, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getCustomName, getDependencies, getDisplayName, getEnvironmentDependencies, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getName, getNewScratch, getNodeSlotsChangedEventEmitter, getNodeUILocationPerViewModePerCompartment, getNodeUILocationWithin, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProject, getProjectCompartment, getProjectDataDirs, getProjectDirectory, getRuntimeProject, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getTextDescription, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isUiLocked, isVisibleIn, onSlotConfigurationChanged, renderInputSlots, renderOutputSlots, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setNodeUILocationPerViewModePerCompartment, setNodeUILocationWithin, setNodeUILocationWithin, setParentGraph, setProjectDirectory, setRuntimeProject, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, setUiLocked, toggleSlot, toJson, updateGraphNodeSlots

Methods inherited from class org.hkijena.jipipe.api.parameters.AbstractJIPipeParameterCollection

getParameterChangedEventEmitter, getParameterStructureChangedEventEmitter, getParameterUIChangedEventEmitter, onParameterStructureChanged, onParameterUIChanged, registerSubParameter, registerSubParameters

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.nodes.iterationstep.JIPipeIterationStepAlgorithm

generateDataBatchesDryRun

Methods inherited from interface org.hkijena.jipipe.api.nodes.JIPipeAdaptiveParametersAlgorithm

installUIOverrideParameterEditor, installUIParameterOptions

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

deserializeFromJsonNode, emitParameterChangedEvent, emitParameterStructureChangedEvent, emitParameterUIChangedEvent, getContextActions, getParameter, getParameterAccess, getParameterChangedEventEmitter, getParameterStructureChangedEventEmitter, getParameterUIChangedEventEmitter, serializeToJsonFile, serializeToJsonGenerator, serializeToJsonString, setParameter

Methods inherited from interface org.hkijena.jipipe.api.validation.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection.ParameterUIChangedEventListener

onParameterUIChanged

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection.ParameterStructureChangedEventListener

onParameterStructureChanged

Constructor Detail

ConnectVerticesFastAlgorithm

public ConnectVerticesFastAlgorithm(JIPipeNodeInfo info)

ConnectVerticesFastAlgorithm

public ConnectVerticesFastAlgorithm(ConnectVerticesFastAlgorithm other)

Method Detail

getNewEdgeMetadata

public StringAndStringPairParameter.List getNewEdgeMetadata()

setNewEdgeMetadata

public void setNewEdgeMetadata(StringAndStringPairParameter.List newEdgeMetadata)

isIgnoreLimitConnectionsForSource

public boolean isIgnoreLimitConnectionsForSource()

setIgnoreLimitConnectionsForSource

public void setIgnoreLimitConnectionsForSource(boolean ignoreLimitConnectionsForSource)

isIgnoreLimitConnectionsForTarget

public boolean isIgnoreLimitConnectionsForTarget()

setIgnoreLimitConnectionsForTarget

public void setIgnoreLimitConnectionsForTarget(boolean ignoreLimitConnectionsForTarget)

getCandidateVertexValueLimit

public Vector2dParameter getCandidateVertexValueLimit()

setCandidateVertexValueLimit

public void setCandidateVertexValueLimit(Vector2dParameter candidateVertexValueLimit)

getCandidateVertexDegreeLimit

public Vector2iParameter getCandidateVertexDegreeLimit()

setCandidateVertexDegreeLimit

public void setCandidateVertexDegreeLimit(Vector2iParameter candidateVertexDegreeLimit)

getLimitConnectionsLengthSortOrder

public SortOrder getLimitConnectionsLengthSortOrder()

setLimitConnectionsLengthSortOrder

public void setLimitConnectionsLengthSortOrder(SortOrder limitConnectionsLengthSortOrder)

getLimitConnections

public OptionalIntegerParameter getLimitConnections()

setLimitConnections

public void setLimitConnections(OptionalIntegerParameter limitConnections)

isIgnoreIfHasPath

public boolean isIgnoreIfHasPath()

setIgnoreIfHasPath

public void setIgnoreIfHasPath(boolean ignoreIfHasPath)

getLengthRange

public Vector2dParameter getLengthRange()

setLengthRange

public void setLengthRange(Vector2dParameter lengthRange)

isEnforceEdgesWithinMask

public boolean isEnforceEdgesWithinMask()

setEnforceEdgesWithinMask

public void setEnforceEdgesWithinMask(boolean enforceEdgesWithinMask)

getNewEdgeColor

public OptionalColorParameter getNewEdgeColor()

setNewEdgeColor

public void setNewEdgeColor(OptionalColorParameter newEdgeColor)

getSourceVertexFilter

public OptionalJIPipeExpressionParameter getSourceVertexFilter()

setSourceVertexFilter

public void setSourceVertexFilter(OptionalJIPipeExpressionParameter sourceVertexFilter)

getTargetVertexFilter

public OptionalJIPipeExpressionParameter getTargetVertexFilter()

setTargetVertexFilter

public void setTargetVertexFilter(OptionalJIPipeExpressionParameter targetVertexFilter)

isConnectAcrossC

public boolean isConnectAcrossC()

setConnectAcrossC

public void setConnectAcrossC(boolean connectAcrossC)

isConnectAcrossT

public boolean isConnectAcrossT()

setConnectAcrossT

public void setConnectAcrossT(boolean connectAcrossT)

isEnable3D

public boolean isEnable3D()

setEnable3D

public void setEnable3D(boolean enable3D)

runIteration

protected void runIteration(JIPipeSingleIterationStep iterationStep,
                            JIPipeIterationContext iterationContext,
                            JIPipeGraphNodeRunContext runContext,
                            JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeIteratingAlgorithm

Runs code on one data row

Specified by:

runIteration in class JIPipeIteratingAlgorithm

Parameters:

iterationStep - The data interface

iterationContext - The iteration context

runContext - the run context

progressInfo - the progress info from the run