org.hkijena.jipipe.plugins.ijfilaments.nodes.modify

Class ConnectVerticesAlgorithm

java.lang.Object

org.hkijena.jipipe.api.parameters.AbstractJIPipeParameterCollection

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.algorithm.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.algorithm.JIPipeIteratingAlgorithm

org.hkijena.jipipe.plugins.ijfilaments.nodes.modify.ConnectVerticesAlgorithm

All Implemented Interfaces:

JIPipeSlotConfiguration.SlotConfigurationChangedEventListener, JIPipeFunctionallyComparable, JIPipeIterationStepAlgorithm, JIPipeAdaptiveParametersAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection, JIPipeParameterCollection.ParameterChangedEventListener, JIPipeParameterCollection.ParameterStructureChangedEventListener, JIPipeParameterCollection.ParameterUIChangedEventListener, JIPipeValidatable

public class ConnectVerticesAlgorithm
extends JIPipeIteratingAlgorithm

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	ConnectVerticesAlgorithm.EdgeCandidate

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.BaseDirectoryChangedEventEmitter, JIPipeGraphNode.BaseDirectoryChangedEventListener, JIPipeGraphNode.NodeSlotsChangedEvent, JIPipeGraphNode.NodeSlotsChangedEventEmitter, JIPipeGraphNode.NodeSlotsChangedEventListener, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterChangedEventEmitter, JIPipeParameterCollection.ParameterChangedEventListener, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEventEmitter, JIPipeParameterCollection.ParameterStructureChangedEventListener, JIPipeParameterCollection.ParameterUIChangedEvent, JIPipeParameterCollection.ParameterUIChangedEventEmitter, JIPipeParameterCollection.ParameterUIChangedEventListener

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.algorithm.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
ConnectVerticesAlgorithm(ConnectVerticesAlgorithm other)
ConnectVerticesAlgorithm(JIPipeNodeInfo info)

Method Summary

Modifier and Type	Method and Description
JIPipeExpressionParameter	getFilterFunction()
OptionalIntegerParameter	getLimitConnections()
OptionalColorParameter	getNewEdgeColor()
StringAndStringPairParameter.List	getNewEdgeMetadata()
JIPipeExpressionParameter	getScoringFunction()
OptionalJIPipeExpressionParameter	getSourceVertexFilter()
OptionalJIPipeExpressionParameter	getTargetVertexFilter()
boolean	isConnectAcrossC()
boolean	isConnectAcrossT()
boolean	isEnable3D()
boolean	isEnforceEdgesWithinMask()
boolean	isFindPath()
boolean	isIgnoreLimitConnectionsForSource()
boolean	isIgnoreLimitConnectionsForTarget()
boolean	isParameterUIVisible(JIPipeParameterTree tree, JIPipeParameterAccess access) Allows to override the visibility of parameters inside the UI
boolean	isRequireDirection()
protected void	runIteration(JIPipeSingleIterationStep iterationStep, JIPipeIterationContext iterationContext, JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo) Runs code on one data row
void	setConnectAcrossC(boolean connectAcrossC)
void	setConnectAcrossT(boolean connectAcrossT)
void	setEnable3D(boolean enable3D)
void	setEnforceEdgesWithinMask(boolean enforceEdgesWithinMask)
void	setFilterFunction(JIPipeExpressionParameter filterFunction)
void	setFindPath(boolean findPath)
void	setIgnoreLimitConnectionsForSource(boolean ignoreLimitConnectionsForSource)
void	setIgnoreLimitConnectionsForTarget(boolean ignoreLimitConnectionsForTarget)
void	setLimitConnections(OptionalIntegerParameter limitConnections)
void	setNewEdgeColor(OptionalColorParameter newEdgeColor)
void	setNewEdgeMetadata(StringAndStringPairParameter.List newEdgeMetadata)
void	setRequireDirection(boolean requireDirection)
void	setScoringFunction(JIPipeExpressionParameter scoringFunction)
void	setSourceVertexFilter(OptionalJIPipeExpressionParameter sourceVertexFilter)
void	setTargetVertexFilter(OptionalJIPipeExpressionParameter targetVertexFilter)

Methods inherited from class org.hkijena.jipipe.api.nodes.algorithm.JIPipeIteratingAlgorithm

createUIInputSlotIconDescriptionMenuItems, generateDataBatchesGenerationResult, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getLocalParallelizationNumThreads, getParallelizationBatchSize, isAllowEmptyIterationStep, isParameterUIVisible, runParameterSet, runPassThrough, setLocalParallelizationNumThreads, supportsParallelization

Methods inherited from class org.hkijena.jipipe.api.nodes.algorithm.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, getUIInputSlotIcon, getUIInputSlotIconBaseDimensions, onParameterChanged, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, canPassThrough, functionallyEquals, getDefaultCustomExpressionVariables, getRuntimePartition, isEnabled, isEnableDefaultCustomExpressionVariables, isPassThrough, isPostprocessor, isPreprocessor, isSkipped, loadExample, onDeserialized, reportValidity, runPassThrough, setEnabled, setPassThrough, setRuntimePartition, setSkipped

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

archiveTo, canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, emitNodeSlotsChangedEvent, fromJson, getAliasIdInParentGraph, getBaseDirectory, getBaseDirectoryChangedEventEmitter, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getCustomName, getDependencies, getDisplayName, getEnvironmentDependencies, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getName, getNewScratch, getNodeSlotsChangedEventEmitter, getNodeUILocationPerViewModePerCompartment, getNodeUILocationWithin, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProject, getProjectCompartment, getProjectDataDirs, getProjectDirectory, getRuntimeProject, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getTextDescription, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isUiLocked, isVisibleIn, onSlotConfigurationChanged, renderInputSlots, renderOutputSlots, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setNodeUILocationPerViewModePerCompartment, setNodeUILocationWithin, setNodeUILocationWithin, setParentGraph, setProjectDirectory, setRuntimeProject, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, setUiLocked, toggleSlot, toJson, updateGraphNodeSlots

Methods inherited from class org.hkijena.jipipe.api.parameters.AbstractJIPipeParameterCollection

getParameterChangedEventEmitter, getParameterStructureChangedEventEmitter, getParameterUIChangedEventEmitter, onParameterStructureChanged, onParameterUIChanged, registerSubParameter, registerSubParameters

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.nodes.iterationstep.JIPipeIterationStepAlgorithm

generateDataBatchesDryRun

Methods inherited from interface org.hkijena.jipipe.api.nodes.JIPipeAdaptiveParametersAlgorithm

installUIOverrideParameterEditor, installUIParameterOptions

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

deserializeFromJsonNode, emitParameterChangedEvent, emitParameterStructureChangedEvent, emitParameterUIChangedEvent, getContextActions, getParameter, getParameterAccess, getParameterChangedEventEmitter, getParameterStructureChangedEventEmitter, getParameterUIChangedEventEmitter, serializeToJsonFile, serializeToJsonGenerator, serializeToJsonString, setParameter

Methods inherited from interface org.hkijena.jipipe.api.validation.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection.ParameterUIChangedEventListener

onParameterUIChanged

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection.ParameterStructureChangedEventListener

onParameterStructureChanged

Constructor Detail

ConnectVerticesAlgorithm

public ConnectVerticesAlgorithm(JIPipeNodeInfo info)

ConnectVerticesAlgorithm

public ConnectVerticesAlgorithm(ConnectVerticesAlgorithm other)

Method Detail

isIgnoreLimitConnectionsForSource

public boolean isIgnoreLimitConnectionsForSource()

setIgnoreLimitConnectionsForSource

public void setIgnoreLimitConnectionsForSource(boolean ignoreLimitConnectionsForSource)

isIgnoreLimitConnectionsForTarget

public boolean isIgnoreLimitConnectionsForTarget()

setIgnoreLimitConnectionsForTarget

public void setIgnoreLimitConnectionsForTarget(boolean ignoreLimitConnectionsForTarget)

getScoringFunction

public JIPipeExpressionParameter getScoringFunction()

setScoringFunction

public void setScoringFunction(JIPipeExpressionParameter scoringFunction)

getLimitConnections

public OptionalIntegerParameter getLimitConnections()

setLimitConnections

public void setLimitConnections(OptionalIntegerParameter limitConnections)

getSourceVertexFilter

public OptionalJIPipeExpressionParameter getSourceVertexFilter()

setSourceVertexFilter

public void setSourceVertexFilter(OptionalJIPipeExpressionParameter sourceVertexFilter)

getTargetVertexFilter

public OptionalJIPipeExpressionParameter getTargetVertexFilter()

setTargetVertexFilter

public void setTargetVertexFilter(OptionalJIPipeExpressionParameter targetVertexFilter)

isFindPath

public boolean isFindPath()

setFindPath

public void setFindPath(boolean findPath)

getNewEdgeMetadata

public StringAndStringPairParameter.List getNewEdgeMetadata()

setNewEdgeMetadata

public void setNewEdgeMetadata(StringAndStringPairParameter.List newEdgeMetadata)

isParameterUIVisible

public boolean isParameterUIVisible(JIPipeParameterTree tree,
                                    JIPipeParameterAccess access)

Description copied from interface: JIPipeParameterCollection

Allows to override the visibility of parameters inside the UI

Specified by:

isParameterUIVisible in interface JIPipeParameterCollection

Overrides:

isParameterUIVisible in class JIPipeIteratingAlgorithm

Parameters:

tree - the parameter tree that is used to access this parameter

access - the parameter

Returns:

if the parameter is visible inside the UI

isEnforceEdgesWithinMask

public boolean isEnforceEdgesWithinMask()

setEnforceEdgesWithinMask

public void setEnforceEdgesWithinMask(boolean enforceEdgesWithinMask)

getNewEdgeColor

public OptionalColorParameter getNewEdgeColor()

setNewEdgeColor

public void setNewEdgeColor(OptionalColorParameter newEdgeColor)

isRequireDirection

public boolean isRequireDirection()

setRequireDirection

public void setRequireDirection(boolean requireDirection)

getFilterFunction

public JIPipeExpressionParameter getFilterFunction()

setFilterFunction

public void setFilterFunction(JIPipeExpressionParameter filterFunction)

isConnectAcrossC

public boolean isConnectAcrossC()

setConnectAcrossC

public void setConnectAcrossC(boolean connectAcrossC)

isConnectAcrossT

public boolean isConnectAcrossT()

setConnectAcrossT

public void setConnectAcrossT(boolean connectAcrossT)

isEnable3D

public boolean isEnable3D()

setEnable3D

public void setEnable3D(boolean enable3D)

runIteration

protected void runIteration(JIPipeSingleIterationStep iterationStep,
                            JIPipeIterationContext iterationContext,
                            JIPipeGraphNodeRunContext runContext,
                            JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeIteratingAlgorithm

Runs code on one data row

Specified by:

runIteration in class JIPipeIteratingAlgorithm

Parameters:

iterationStep - The data interface

iterationContext - The iteration context

runContext - the run context

progressInfo - the progress info from the run