Modifier and Type | Class and Description |
---|---|
class |
AnnotateWithAnnotationTable
Algorithm that merges the annotations of all inputs and outputs the data with the shared annotations
|
class |
AnnotateWithData |
class |
OverwriteAnnotations |
Modifier and Type | Class and Description |
---|---|
class |
Cellpose2SegmentationInferenceAlgorithm |
class |
Cellpose2TrainingAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
Cellpose3DenoiseInferenceAlgorithm |
class |
Cellpose3DenoiseTrainingAlgorithm |
class |
Cellpose3SegmentationInferenceAlgorithm |
class |
Cellpose3SegmentationTrainingAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
Cellpose1TrainingAlgorithm
Deprecated.
|
class |
LegacyCellpose2TrainingAlgorithm
Deprecated.
|
Modifier and Type | Class and Description |
---|---|
class |
ConcatenatePaths
Applies subfolder navigation to each input folder
|
class |
CopyPath
Applies subfolder navigation to each input folder
|
class |
ExportData |
class |
ExportDataTable |
class |
RelativizePaths
Applies subfolder navigation to each input folder
|
Modifier and Type | Class and Description |
---|---|
class |
IteratingFormProcessorAlgorithm |
class |
MergingFormProcessorAlgorithm |
class |
SimpleIteratingFormProcessorAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
ErodedVolumeFraction3DAlgorithm |
class |
Watershed3DSplittingAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
SetOverlay3DAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
Roi3DToLabelsAlgorithm |
class |
Roi3DToMaskAlgorithm |
class |
Roi3DToRGBAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
FilterRoi3DByOverlapAlgorithm |
class |
FilterRoi3DByStatisticsAlgorithm
Wrapper around
RoiManager |
Modifier and Type | Class and Description |
---|---|
class |
ExtractRoi3DRelationStatisticsAlgorithm |
class |
ExtractRoi3DStatisticsAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
SetROI3DMetadataFromTableAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
ChangeRoi3DPropertiesFromExpressionsAlgorithm |
class |
ChangeRoi3DPropertiesFromTableAlgorithm |
class |
ColorRoi3DByStatisticsAlgorithm
Wrapper around
RoiManager |
Modifier and Type | Class and Description |
---|---|
class |
RemoveBorderRoi3DAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
SplitRoi3DIntoConnectedComponentsAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
ConstantSpotSegmentation3DAlgorithm |
class |
DifferenceSpotSegmentation3DAlgorithm |
class |
GaussianFitSpotSegmentation3DAlgorithm |
class |
IterativeThreshold3DAlgorithm |
class |
LocalMeanSpotSegmentation3DAlgorithm |
class |
Watershed3DSegmentationAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
ConvertFilamentsToLabels2Algorithm |
class |
ConvertFilamentsToLabelsAlgorithm |
class |
ConvertFilamentsToMaskAlgorithm |
class |
ConvertFilamentsToRGBAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
RemoveBorderFilaments |
Modifier and Type | Class and Description |
---|---|
class |
SkeletonToSimplifiedFilamentsFijiAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
ConnectVerticesAlgorithm |
class |
ConnectVerticesFastAlgorithm |
class |
SetVertexMetadataFromImageAlgorithm |
class |
SetVertexPhysicalSizeFromImageAlgorithm |
class |
SetVertexRadiusFromImageAlgorithm |
class |
SetVertexValueFromImageAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
SetOverlayFilamentsAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
CopyFilamentsAcrossZCTAlgorithm |
class |
FixOverlapsNonBranchingAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
MultiTemplateMatchingAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
SpotDetectorNode |
class |
SpotsToRGBNode |
Modifier and Type | Class and Description |
---|---|
class |
FollowSpotsPerTrackNode |
class |
TrackingNode |
class |
TracksToRGBNode |
Modifier and Type | Class and Description |
---|---|
class |
ImportWekaModelFromFileAlgorithm |
class |
WekaClassification2DAlgorithm |
class |
WekaClassification3DAlgorithm |
class |
WekaTrainingLabels2DAlgorithm |
class |
WekaTrainingMask2DAlgorithm |
class |
WekaTrainingMask2DAlgorithm2 |
class |
WekaTrainingROI2DAlgorithm |
class |
WekaTrainingROI3DAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
IlastikAutoContextAlgorithm |
class |
IlastikObjectClassificationAlgorithm |
class |
IlastikPixelClassificationAlgorithm |
class |
IlastikPredictionMapsObjectClassificationAlgorithm |
class |
IlastikSegmentationImageObjectClassificationAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
MacroWrapperAlgorithm
An algorithm that wraps around an ImageJ macro
|
Modifier and Type | Class and Description |
---|---|
class |
AnalyzeSkeleton2D3DAlgorithm |
class |
ImageStatisticsAlgorithm
Wrapper around
RoiManager |
Modifier and Type | Class and Description |
---|---|
class |
BitwiseLogicalOperationAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
CopyPhysicalDimensionsBetweenImagesAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
Coloc2Node |
Modifier and Type | Class and Description |
---|---|
class |
MergeHSBChannelsAlgorithm |
class |
MergeLABChannelsAlgorithm |
class |
MergeRGBChannelsAlgorithm |
class |
SplitChannelsByTableAlgorithm
Wrapper around
ChannelSplitter |
Modifier and Type | Class and Description |
---|---|
class |
ImageToTableColumnAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
ConvolveByImage2DAlgorithm
Wrapper around
Convolver |
Modifier and Type | Class and Description |
---|---|
class |
OMEImageFromImagePlus |
Modifier and Type | Class and Description |
---|---|
class |
StackCombinerAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
FFTCustomFilter |
Modifier and Type | Class and Description |
---|---|
class |
DrawMaskAlgorithm |
class |
DrawROIAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
GenerateMissingImageFromMathExpression2D
Wrapper around
ImageProcessor |
class |
GenerateMissingTablesAlgorithm
Deprecated.
|
class |
GenerateMissingTablesAlgorithm2 |
class |
GenerateMissingZeroImage
Wrapper around
ImageProcessor |
Modifier and Type | Class and Description |
---|---|
class |
ExportImageDirectorySlotAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
AnnotateWithOverlapMeasureLabelsAlgorithm |
class |
ExtractLabelStatisticsAlgorithm |
class |
MergeLabelsAlgorithm |
class |
OverlapMeasureLabelsAlgorithm |
class |
ReplaceLabelsByTableAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
FilterLabelsByMaskAlgorithm |
class |
FilterLabelsByOverlapAlgorithm |
class |
FilterLabelsByStatisticsAlgorithm
Wrapper around
RoiManager |
Modifier and Type | Class and Description |
---|---|
class |
SetLUTFromImageAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
ImageComparer2DAlgorithm
Deprecated.
|
class |
LegacyImageCalculator2DAlgorithm
Deprecated.
|
Modifier and Type | Class and Description |
---|---|
class |
GeodesicDistanceMap2DAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
ImposeMaxima2DAlgorithm |
class |
ImposeMaxima3DAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
SetImageMetadataFromTableAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
MorphologicalReconstruction2DAlgorithm |
class |
MorphologicalReconstruction3DAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
SetOverlayAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
SimpleImageRegistrationAlgorithm
Port of
Register_Virtual_Stack_MT |
Modifier and Type | Class and Description |
---|---|
class |
TurboRegRegistration2DReferencedAlgorithm
Port of
Register_Virtual_Stack_MT |
Modifier and Type | Class and Description |
---|---|
class |
CropToRoiAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
AssembleExtractedROIAlgorithm |
class |
ExtractFromROIAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
ExtractImageInRoiAlgorithm |
class |
ROIToLabelsByNameAlgorithm |
class |
ROIToLabelsExpressionAlgorithm |
class |
RoiToMaskAlgorithm
Wrapper around
RoiManager |
class |
RoiToRGBAlgorithm
Wrapper around
RoiDrawer |
Modifier and Type | Class and Description |
---|---|
class |
DrawLineOvalRectangleRoiAlgorithm |
class |
DrawOvalRoiAlgorithm
Deprecated.
|
class |
DrawRectangleRoiAlgorithm
Deprecated.
|
class |
DrawScaleBarRoiAlgorithm |
class |
DrawTextRoiAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
FilterROIByOverlapAlgorithm |
class |
FilterRoiByStatisticsAlgorithm
Wrapper around
RoiManager |
class |
FilterRoiByStatisticsScriptAlgorithm
Wrapper around
RoiManager |
class |
RemoveBorderRoisAlgorithm
Wrapper around
RoiManager |
Modifier and Type | Class and Description |
---|---|
class |
GenerateMissingRoiListsAlgorithm |
class |
ReferencedAppendRectangularRoiAlgorithm
Deprecated.
|
Modifier and Type | Class and Description |
---|---|
class |
ExtractRoi2DRelationStatisticsAlgorithm |
class |
ExtractROIProfileAlgorithm |
class |
RoiStatisticsAlgorithm
Wrapper around
RoiManager |
Modifier and Type | Class and Description |
---|---|
class |
FilterAndMergeRoiByStatisticsScriptAlgorithm
Wrapper around
RoiManager |
class |
MergeRoiListsOrderedAlgorithm
Wrapper around
RoiManager |
class |
MergeRoiListsPairwiseOrAlgorithm
Wrapper around
RoiManager |
Modifier and Type | Class and Description |
---|---|
class |
ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm |
class |
ChangeRoiPropertiesFromExpressionsAlgorithm
Wrapper around
RoiManager |
class |
ChangeRoiPropertiesFromTableAlgorithm
Wrapper around
RoiManager |
class |
ColorRoiByStatisticsAlgorithm
Wrapper around
RoiManager |
class |
EnlargeShrinkRoiAlgorithm
Wrapper around
RoiManager |
class |
RoiFloodFillAlgorithm
Wrapper around
RoiManager |
class |
RotateRoiAlgorithm
Wrapper around
RoiManager |
class |
SetRoiImageAlgorithm
Wrapper around
RoiManager |
Modifier and Type | Class and Description |
---|---|
class |
SetRoiMetadataByStatisticsAlgorithm
Wrapper around
RoiManager |
class |
SetROIMetadataFromTableAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
RegisterRoiToImageByBrightnessAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
SortAndExtractRoiByStatisticsAlgorithm
Deprecated.
|
class |
SortAndExtractRoiByStatisticsAlgorithm2
Wrapper around
RoiManager |
class |
SortRoiListByExpressionsAndMeasurementsAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
SplitRoiConnectedComponentsAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
SeededWatershedSegmentationAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
AverageKeyValueThresholdStatisticsGenerator |
class |
FastKeyValueThresholdStatisticsGenerator |
class |
KeyValueAveragesGenerator |
class |
KeyValueHistogramGenerator |
class |
KeyValueThresholdPartitionAveragesGenerator |
class |
KeyValueThresholdPartitionGenerator |
class |
KeyValueThresholdStatisticsGenerator |
Modifier and Type | Class and Description |
---|---|
class |
IterativeThresholdByROIStatistics2DAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
LineMirror2DFromRoiAlgorithm |
class |
MergeImagesAlgorithm |
class |
TransformEqualizeDimensionsAlgorithm |
class |
TransformEqualizeDimensionsToMaxAlgorithm |
class |
Warp2DAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
AnnotateDataWithImagePropertiesAlgorithm
Adds data annotations that contain the image properties
|
Modifier and Type | Class and Description |
---|---|
class |
SetImpAlphaChannelAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
MergeParametersAlgorithm |
class |
MultiplyParametersAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
UploadOMEROImageToDatasetAlgorithm |
class |
UploadOMEROTableAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
Omnipose0InferenceAlgorithm |
class |
Omnipose0TrainingAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
LegacyOmnipose0TrainingAlgorithm
Deprecated.
|
Modifier and Type | Class and Description |
---|---|
class |
InpaintingAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
AnnotateDataWithTableValues |
Modifier and Type | Class and Description |
---|---|
class |
MergeTableColumnsSupplementAlgorithm
Algorithm that integrates columns
|
class |
MergeTableColumnsSupplementMergingAlgorithm
Algorithm that integrates columns
|
Modifier and Type | Class and Description |
---|---|
class |
UsePlaceholderForMissingDataAlgorithm |
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