org.hkijena.jipipe.extensions.imageviewer

Class JIPipeImageViewerPlugin2D

java.lang.Object

org.hkijena.jipipe.extensions.imageviewer.JIPipeImageViewerPlugin

org.hkijena.jipipe.extensions.imageviewer.JIPipeImageViewerPlugin2D

All Implemented Interfaces:

JIPipeWorkbenchAccess, Disposable

Direct Known Subclasses:

AnnotationInfoPlugin2D, GeneralImageViewerPanelPlugin2D, MaskDrawer2DTool, MaskDrawerPlugin2D, ROIManagerPlugin2D, SpotsManagerPlugin2D, TracksManagerPlugin2D

public abstract class JIPipeImageViewerPlugin2D
extends JIPipeImageViewerPlugin

Constructor Summary

Constructors

Constructor and Description
JIPipeImageViewerPlugin2D(JIPipeImageViewer viewerPanel)

Method Summary

Modifier and Type	Method and Description
void	beforeDraw(int c, int z, int t) Called before draw is called
ij.process.ImageProcessor	draw(int c, int z, int t, ij.process.ImageProcessor processor) Draws the image in the processor
ij.process.ImageProcessor	getCurrentSlice()
ImageSliceIndex	getCurrentSlicePosition()
ImageViewerPanel2D	getViewerPanel2D()
void	onSliceChanged(boolean deferUploadSlice) Called when the current slice is changed
void	postprocessDraw(Graphics2D graphics2D, Rectangle renderArea, ImageSliceIndex sliceIndex) Called after the image has been drawn after the image has been drawn
void	postprocessDrawForExport(BufferedImage image, ImageSliceIndex sliceIndex, double magnification) Called while exporting the image slice.
void	uploadSliceToCanvas()

Methods inherited from class org.hkijena.jipipe.extensions.imageviewer.JIPipeImageViewerPlugin

getCategory, getCategoryIcon, getCurrentImage, getCurrentImagePlus, getDataSource, getViewerPanel, getWorkbench, initializeSettingsPanel, onImageChanged, onOverlayAdded, onOverlayRemoved, onOverlaysCleared

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.scijava.Disposable

dispose

Constructor Detail

JIPipeImageViewerPlugin2D

public JIPipeImageViewerPlugin2D(JIPipeImageViewer viewerPanel)

Method Detail

getViewerPanel2D

public ImageViewerPanel2D getViewerPanel2D()

uploadSliceToCanvas

public void uploadSliceToCanvas()

getCurrentSlicePosition

public ImageSliceIndex getCurrentSlicePosition()

getCurrentSlice

public ij.process.ImageProcessor getCurrentSlice()

draw

public ij.process.ImageProcessor draw(int c,
                                      int z,
                                      int t,
                                      ij.process.ImageProcessor processor)

Draws the image in the processor

Parameters:

c - c position

z - z position

t - t position

processor - the processor

Returns:

the modified processor

onSliceChanged

public void onSliceChanged(boolean deferUploadSlice)

Called when the current slice is changed

Parameters:

deferUploadSlice - if true, uploading the slice to the canvas should be deferred

beforeDraw

public void beforeDraw(int c,
                       int z,
                       int t)

Called before draw is called

Parameters:

c - c position

z - z position

t - t position

postprocessDraw

public void postprocessDraw(Graphics2D graphics2D,
                            Rectangle renderArea,
                            ImageSliceIndex sliceIndex)

Called after the image has been drawn after the image has been drawn

Parameters:

graphics2D - the graphics

renderArea - the render area

sliceIndex - the index of the slice

postprocessDrawForExport

public void postprocessDrawForExport(BufferedImage image,
                                     ImageSliceIndex sliceIndex,
                                     double magnification)

Called while exporting the image slice. Use this to export items handled by postprocessDraw

Parameters:

image - the image

sliceIndex - the slice

magnification - the magnification