org.hkijena.jipipe.extensions.imageviewer.plugins2d.roimanager

Class ROIManagerPlugin2D

java.lang.Object

org.hkijena.jipipe.extensions.imageviewer.JIPipeImageViewerPlugin

org.hkijena.jipipe.extensions.imageviewer.JIPipeImageViewerPlugin2D

org.hkijena.jipipe.extensions.imageviewer.plugins2d.roimanager.ROIManagerPlugin2D

All Implemented Interfaces:

JIPipeWorkbenchAccess, Disposable

public class ROIManagerPlugin2D
extends JIPipeImageViewerPlugin2D

Constructor Summary

Constructors

Constructor and Description
ROIManagerPlugin2D(JIPipeImageViewer viewerPanel)

Method Summary

Modifier and Type	Method and Description
void	addSelectionContextPanel(ROIManagerPlugin2DSelectionContextPanel panel)
void	clearROIs(boolean deferUploadSlice)
ij.process.ImageProcessor	draw(int c, int z, int t, ij.process.ImageProcessor processor) Draws the image in the processor
void	exportROIsToManager()
void	exportROIsToManager(ROIListData rois)
String	getCategory() The tool panel category where this tool is shown
Icon	getCategoryIcon() The icon for the category if a new one must be created
RoiDrawer	getRoiDrawer()
JList<Roi>	getRoiListControl()
ROIListData	getRois()
ROIListData	getSelectedROIOrAll(String title, String message)
List<ROIManagerPlugin2DSelectionContextPanel>	getSelectionContextPanels()
void	importROIs(ROIListData rois, boolean deferUploadSlice)
void	importROIsFromManager(boolean deferUploadSlice)
void	initializeSettingsPanel(FormPanel formPanel) Called when the form panel should be recreated
boolean	isFilterListHideInvisible()
boolean	isFilterListOnlySelected()
void	onImageChanged() Called when the current image is changed
void	onOverlayAdded(Object overlay) Called if an overlay was added
void	onOverlayRemoved(Object overlay) Called if an overlay was removed
void	onOverlaysCleared() Called if the overlays were cleared
void	onSliceChanged(boolean deferUploadSlice) Called when the current slice is changed
void	postprocessDraw(Graphics2D graphics2D, Rectangle renderArea, ImageSliceIndex sliceIndex) Called after the image has been drawn after the image has been drawn
void	postprocessDrawForExport(BufferedImage image, ImageSliceIndex sliceIndex, double magnification) Called while exporting the image slice.
void	removeSelectedROIs(boolean deferUploadSlice)
void	removeSelectionContextPanel(ROIManagerPlugin2DSelectionContextPanel panel)
void	setFilterListHideInvisible(boolean filterListHideInvisible)
void	setFilterListOnlySelected(boolean filterListOnlySelected)
void	setRois(ROIListData rois, boolean deferUploadSlice)
void	setSelectedROI(Collection<Roi> select, boolean force)
void	updateListModel()
void	updateListModel(boolean deferUploadSlice, Collection<Roi> excludeFromFilter)

Methods inherited from class org.hkijena.jipipe.extensions.imageviewer.JIPipeImageViewerPlugin2D

beforeDraw, getCurrentSlice, getCurrentSlicePosition, getViewerPanel2D, uploadSliceToCanvas

Methods inherited from class org.hkijena.jipipe.extensions.imageviewer.JIPipeImageViewerPlugin

getCurrentImage, getCurrentImagePlus, getDataSource, getViewerPanel, getWorkbench

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.scijava.Disposable

dispose

Constructor Detail

ROIManagerPlugin2D

public ROIManagerPlugin2D(JIPipeImageViewer viewerPanel)

Method Detail

onImageChanged

public void onImageChanged()

Description copied from class: JIPipeImageViewerPlugin

Called when the current image is changed

Overrides:

onImageChanged in class JIPipeImageViewerPlugin

onOverlayAdded

public void onOverlayAdded(Object overlay)

Description copied from class: JIPipeImageViewerPlugin

Called if an overlay was added

Overrides:

onOverlayAdded in class JIPipeImageViewerPlugin

Parameters:

overlay - the overlay

onOverlayRemoved

public void onOverlayRemoved(Object overlay)

Description copied from class: JIPipeImageViewerPlugin

Called if an overlay was removed

Overrides:

onOverlayRemoved in class JIPipeImageViewerPlugin

Parameters:

overlay - the overlay

onOverlaysCleared

public void onOverlaysCleared()

Description copied from class: JIPipeImageViewerPlugin

Called if the overlays were cleared

Overrides:

onOverlaysCleared in class JIPipeImageViewerPlugin

initializeSettingsPanel

public void initializeSettingsPanel(FormPanel formPanel)

Description copied from class: JIPipeImageViewerPlugin

Called when the form panel should be recreated

Overrides:

initializeSettingsPanel in class JIPipeImageViewerPlugin

Parameters:

formPanel - the form panel

getSelectedROIOrAll

public ROIListData getSelectedROIOrAll(String title,
                                       String message)

getSelectionContextPanels

public List<ROIManagerPlugin2DSelectionContextPanel> getSelectionContextPanels()

addSelectionContextPanel

public void addSelectionContextPanel(ROIManagerPlugin2DSelectionContextPanel panel)

removeSelectionContextPanel

public void removeSelectionContextPanel(ROIManagerPlugin2DSelectionContextPanel panel)

draw

public ij.process.ImageProcessor draw(int c,
                                      int z,
                                      int t,
                                      ij.process.ImageProcessor processor)

Description copied from class: JIPipeImageViewerPlugin2D

Draws the image in the processor

Overrides:

draw in class JIPipeImageViewerPlugin2D

Parameters:

c - c position

z - z position

t - t position

processor - the processor

Returns:

the modified processor

postprocessDraw

public void postprocessDraw(Graphics2D graphics2D,
                            Rectangle renderArea,
                            ImageSliceIndex sliceIndex)

Description copied from class: JIPipeImageViewerPlugin2D

Called after the image has been drawn after the image has been drawn

Overrides:

postprocessDraw in class JIPipeImageViewerPlugin2D

Parameters:

graphics2D - the graphics

renderArea - the render area

sliceIndex - the index of the slice

getRoiDrawer

public RoiDrawer getRoiDrawer()

postprocessDrawForExport

public void postprocessDrawForExport(BufferedImage image,
                                     ImageSliceIndex sliceIndex,
                                     double magnification)

Description copied from class: JIPipeImageViewerPlugin2D

Called while exporting the image slice. Use this to export items handled by postprocessDraw

Overrides:

postprocessDrawForExport in class JIPipeImageViewerPlugin2D

Parameters:

image - the image

sliceIndex - the slice

magnification - the magnification

onSliceChanged

public void onSliceChanged(boolean deferUploadSlice)

Description copied from class: JIPipeImageViewerPlugin2D

Called when the current slice is changed

Overrides:

onSliceChanged in class JIPipeImageViewerPlugin2D

Parameters:

deferUploadSlice - if true, uploading the slice to the canvas should be deferred

getCategory

public String getCategory()

Description copied from class: JIPipeImageViewerPlugin

The tool panel category where this tool is shown

Specified by:

getCategory in class JIPipeImageViewerPlugin

Returns:

the category

getCategoryIcon

public Icon getCategoryIcon()

Description copied from class: JIPipeImageViewerPlugin

The icon for the category if a new one must be created

Specified by:

getCategoryIcon in class JIPipeImageViewerPlugin

Returns:

the icon

importROIs

public void importROIs(ROIListData rois,
                       boolean deferUploadSlice)

removeSelectedROIs

public void removeSelectedROIs(boolean deferUploadSlice)

clearROIs

public void clearROIs(boolean deferUploadSlice)

getRois

public ROIListData getRois()

setRois

public void setRois(ROIListData rois,
                    boolean deferUploadSlice)

exportROIsToManager

public void exportROIsToManager()

exportROIsToManager

public void exportROIsToManager(ROIListData rois)

importROIsFromManager

public void importROIsFromManager(boolean deferUploadSlice)

isFilterListHideInvisible

public boolean isFilterListHideInvisible()

setFilterListHideInvisible

public void setFilterListHideInvisible(boolean filterListHideInvisible)

isFilterListOnlySelected

public boolean isFilterListOnlySelected()

setFilterListOnlySelected

public void setFilterListOnlySelected(boolean filterListOnlySelected)

updateListModel

public void updateListModel()

updateListModel

public void updateListModel(boolean deferUploadSlice,
                            Collection<Roi> excludeFromFilter)

getRoiListControl

public JList<Roi> getRoiListControl()

setSelectedROI

public void setSelectedROI(Collection<Roi> select,
                           boolean force)