org.hkijena.jipipe.extensions.imageviewer

Class ImageViewerPanel2D

java.lang.Object

java.awt.Component

java.awt.Container

javax.swing.JComponent

javax.swing.JPanel

org.hkijena.jipipe.extensions.imageviewer.ImageViewerPanel2D

All Implemented Interfaces:

ImageObserver, MenuContainer, Serializable, Accessible, JIPipeWorkbenchAccess

public class ImageViewerPanel2D
extends JPanel
implements JIPipeWorkbenchAccess

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JPanel

JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields inherited from class javax.swing.JComponent

listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors

Constructor and Description
ImageViewerPanel2D(JIPipeImageViewer imageViewer) Initializes a new image viewer

Method Summary

Modifier and Type	Method and Description
void	copyCurrentSliceToClipboard()
void	dispose()
void	exportAllSlicesToPNG()
void	exportCurrentSliceToPNG()
void	exportVideo()
void	fitImageToScreen()
ij.process.ImageProcessor	generateSlice(int c, int z, int t, double magnification, boolean withPostprocessing) Generates a slice
JSpinner	getAnimationSpeedControl()
ImageViewerPanelCanvas2D	getCanvas()
ij.process.ImageProcessor	getCurrentSlice()
ImageSliceIndex	getCurrentSliceIndex() Returns the currently viewed slice position
ij.process.ImageStatistics	getCurrentSliceStats()
ImageCanvas	getExportDummyCanvas() A dummy ImageCanvas that is needed by some visualization algorithms for magnification Its magnification should be permanently 1.0
double	getExportedMagnification() Returns the magnification that export/render methods should apply
ImagePlusData	getImage()
ij.ImagePlus	getImagePlus()
JIPipeImageViewer	getImageViewer()
ImageViewer2DUISettings	getSettings()
ij.process.ImageStatistics	getSliceStats(ImageSliceIndex sliceIndex)
JToolBar	getToolBar()
JIPipeRunnerQueue	getViewerRunnerQueue()
JIPipeWorkbench	getWorkbench()
ImageCanvas	getZoomedDummyCanvas() A dummy ImageCanvas that is needed by some visualization algorithms for magnification It is updated by ImageViewerPanelCanvas2D Please do not make any changes to the display properties here, as the image viewer has its own canvas
void	refreshFormPanel()
void	refreshSlice()
void	setImage(ImagePlusData image)
void	uploadSliceToCanvas()

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

ImageViewerPanel2D

public ImageViewerPanel2D(JIPipeImageViewer imageViewer)

Initializes a new image viewer

Parameters:

imageViewer - the viewer

Method Detail

getWorkbench

public JIPipeWorkbench getWorkbench()

Specified by:

getWorkbench in interface JIPipeWorkbenchAccess

getSettings

public ImageViewer2DUISettings getSettings()

dispose

public void dispose()

getViewerRunnerQueue

public JIPipeRunnerQueue getViewerRunnerQueue()

getToolBar

public JToolBar getToolBar()

getExportedMagnification

public double getExportedMagnification()

Returns the magnification that export/render methods should apply

Returns:

the magnification

exportCurrentSliceToPNG

public void exportCurrentSliceToPNG()

copyCurrentSliceToClipboard

public void copyCurrentSliceToClipboard()

exportAllSlicesToPNG

public void exportAllSlicesToPNG()

exportVideo

public void exportVideo()

getZoomedDummyCanvas

public ImageCanvas getZoomedDummyCanvas()

A dummy ImageCanvas that is needed by some visualization algorithms for magnification It is updated by ImageViewerPanelCanvas2D Please do not make any changes to the display properties here, as the image viewer has its own canvas

Returns:

the dummy canvas

getExportDummyCanvas

public ImageCanvas getExportDummyCanvas()

A dummy ImageCanvas that is needed by some visualization algorithms for magnification Its magnification should be permanently 1.0

Returns:

the dummy canvas

getImagePlus

public ij.ImagePlus getImagePlus()

refreshFormPanel

public void refreshFormPanel()

getAnimationSpeedControl

public JSpinner getAnimationSpeedControl()

getCurrentSliceIndex

public ImageSliceIndex getCurrentSliceIndex()

Returns the currently viewed slice position

Returns:

the slice position. Zero-based indices

getImageViewer

public JIPipeImageViewer getImageViewer()

refreshSlice

public void refreshSlice()

generateSlice

public ij.process.ImageProcessor generateSlice(int c,
                                               int z,
                                               int t,
                                               double magnification,
                                               boolean withPostprocessing)

Generates a slice

Parameters:

c - the channel location

z - the depth location

t - the frame location

magnification - the magnification

withPostprocessing - if postprocessing (export postprocessing) should be applied

Returns:

the new slice

uploadSliceToCanvas

public void uploadSliceToCanvas()

getCanvas

public ImageViewerPanelCanvas2D getCanvas()

fitImageToScreen

public void fitImageToScreen()

getImage

public ImagePlusData getImage()

setImage

public void setImage(ImagePlusData image)

getCurrentSlice

public ij.process.ImageProcessor getCurrentSlice()

getCurrentSliceStats

public ij.process.ImageStatistics getCurrentSliceStats()

getSliceStats

public ij.process.ImageStatistics getSliceStats(ImageSliceIndex sliceIndex)