org.hkijena.jipipe.extensions.ijtrackmate.display.tracks

Class TracksManagerPlugin2D

java.lang.Object

org.hkijena.jipipe.extensions.imageviewer.JIPipeImageViewerPlugin

org.hkijena.jipipe.extensions.imageviewer.JIPipeImageViewerPlugin2D

org.hkijena.jipipe.extensions.ijtrackmate.display.tracks.TracksManagerPlugin2D

All Implemented Interfaces:

JIPipeWorkbenchAccess, Disposable

public class TracksManagerPlugin2D
extends JIPipeImageViewerPlugin2D

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	TracksManagerPlugin2D.SelectionContextPanel
static class	TracksManagerPlugin2D.SelectionInfoContextPanel

Constructor Summary

Constructors

Constructor and Description
TracksManagerPlugin2D(JIPipeImageViewer viewerPanel)

Method Summary

Modifier and Type	Method and Description
void	addSelectionContextPanel(TracksManagerPlugin2D.SelectionContextPanel panel)
String	getCategory() The tool panel category where this tool is shown
Icon	getCategoryIcon() The icon for the category if a new one must be created
TrackCollectionData	getSelectedTracksOrAll(String title, String message)
List<TracksManagerPlugin2D.SelectionContextPanel>	getSelectionContextPanels()
TrackDrawer	getTrackDrawer()
TrackCollectionData	getTracksCollection()
JList<Integer>	getTracksListControl()
void	initializeSettingsPanel(FormPanel formPanel) Called when the form panel should be recreated
void	onOverlayAdded(Object overlay) Called if an overlay was added
void	onOverlayRemoved(Object overlay) Called if an overlay was removed
void	onSliceChanged(boolean deferUploadSlice) Called when the current slice is changed
void	postprocessDraw(Graphics2D graphics2D, Rectangle renderArea, ImageSliceIndex sliceIndex) Called after the image has been drawn after the image has been drawn
void	postprocessDrawForExport(BufferedImage image, ImageSliceIndex sliceIndex, double magnification) Called while exporting the image slice.
void	removeSelectedTracks(boolean deferUploadSlice)
void	removeSelectionContextPanel(TracksManagerPlugin2D.SelectionContextPanel panel)
void	setTrackCollection(TrackCollectionData tracksCollection)

Methods inherited from class org.hkijena.jipipe.extensions.imageviewer.JIPipeImageViewerPlugin2D

beforeDraw, draw, getCurrentSlice, getCurrentSlicePosition, getViewerPanel2D, uploadSliceToCanvas

Methods inherited from class org.hkijena.jipipe.extensions.imageviewer.JIPipeImageViewerPlugin

getCurrentImage, getCurrentImagePlus, getDataSource, getViewerPanel, getWorkbench, onImageChanged, onOverlaysCleared

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.scijava.Disposable

dispose

Constructor Detail

TracksManagerPlugin2D

public TracksManagerPlugin2D(JIPipeImageViewer viewerPanel)

Method Detail

initializeSettingsPanel

public void initializeSettingsPanel(FormPanel formPanel)

Description copied from class: JIPipeImageViewerPlugin

Called when the form panel should be recreated

Overrides:

initializeSettingsPanel in class JIPipeImageViewerPlugin

Parameters:

formPanel - the form panel

getSelectedTracksOrAll

public TrackCollectionData getSelectedTracksOrAll(String title,
                                                  String message)

getSelectionContextPanels

public List<TracksManagerPlugin2D.SelectionContextPanel> getSelectionContextPanels()

addSelectionContextPanel

public void addSelectionContextPanel(TracksManagerPlugin2D.SelectionContextPanel panel)

removeSelectionContextPanel

public void removeSelectionContextPanel(TracksManagerPlugin2D.SelectionContextPanel panel)

getTrackDrawer

public TrackDrawer getTrackDrawer()

postprocessDraw

public void postprocessDraw(Graphics2D graphics2D,
                            Rectangle renderArea,
                            ImageSliceIndex sliceIndex)

Description copied from class: JIPipeImageViewerPlugin2D

Called after the image has been drawn after the image has been drawn

Overrides:

postprocessDraw in class JIPipeImageViewerPlugin2D

Parameters:

graphics2D - the graphics

renderArea - the render area

sliceIndex - the index of the slice

postprocessDrawForExport

public void postprocessDrawForExport(BufferedImage image,
                                     ImageSliceIndex sliceIndex,
                                     double magnification)

Description copied from class: JIPipeImageViewerPlugin2D

Called while exporting the image slice. Use this to export items handled by postprocessDraw

Overrides:

postprocessDrawForExport in class JIPipeImageViewerPlugin2D

Parameters:

image - the image

sliceIndex - the slice

magnification - the magnification

onSliceChanged

public void onSliceChanged(boolean deferUploadSlice)

Description copied from class: JIPipeImageViewerPlugin2D

Called when the current slice is changed

Overrides:

onSliceChanged in class JIPipeImageViewerPlugin2D

Parameters:

deferUploadSlice - if true, uploading the slice to the canvas should be deferred

getCategory

public String getCategory()

Description copied from class: JIPipeImageViewerPlugin

The tool panel category where this tool is shown

Specified by:

getCategory in class JIPipeImageViewerPlugin

Returns:

the category

getCategoryIcon

public Icon getCategoryIcon()

Description copied from class: JIPipeImageViewerPlugin

The icon for the category if a new one must be created

Specified by:

getCategoryIcon in class JIPipeImageViewerPlugin

Returns:

the icon

setTrackCollection

public void setTrackCollection(TrackCollectionData tracksCollection)

onOverlayAdded

public void onOverlayAdded(Object overlay)

Description copied from class: JIPipeImageViewerPlugin

Called if an overlay was added

Overrides:

onOverlayAdded in class JIPipeImageViewerPlugin

Parameters:

overlay - the overlay

onOverlayRemoved

public void onOverlayRemoved(Object overlay)

Description copied from class: JIPipeImageViewerPlugin

Called if an overlay was removed

Overrides:

onOverlayRemoved in class JIPipeImageViewerPlugin

Parameters:

overlay - the overlay

removeSelectedTracks

public void removeSelectedTracks(boolean deferUploadSlice)

getTracksCollection

public TrackCollectionData getTracksCollection()

getTracksListControl

public JList<Integer> getTracksListControl()