Uses of Class
org.hkijena.jipipe.JIPipe

Packages that use JIPipe

Package	Description
org.hkijena.jipipe
org.hkijena.jipipe.api.compartments
org.hkijena.jipipe.api.grouping
org.hkijena.jipipe.api.looping
org.hkijena.jipipe.api.registries
org.hkijena.jipipe.desktop.api.registries
org.hkijena.jipipe.desktop.commons.components
org.hkijena.jipipe.plugins.annotation
org.hkijena.jipipe.plugins.artifacts
org.hkijena.jipipe.plugins.batchassistant
org.hkijena.jipipe.plugins.cellpose
org.hkijena.jipipe.plugins.clij2
org.hkijena.jipipe.plugins.core
org.hkijena.jipipe.plugins.dataenvironment
org.hkijena.jipipe.plugins.dev
org.hkijena.jipipe.plugins.expressions
org.hkijena.jipipe.plugins.filesystem
org.hkijena.jipipe.plugins.forms
org.hkijena.jipipe.plugins.graphannotation
org.hkijena.jipipe.plugins.ij3d
org.hkijena.jipipe.plugins.ijfilaments
org.hkijena.jipipe.plugins.ijmultitemplatematching
org.hkijena.jipipe.plugins.ijocr
org.hkijena.jipipe.plugins.ijtrackmate
org.hkijena.jipipe.plugins.ijweka
org.hkijena.jipipe.plugins.ilastik
org.hkijena.jipipe.plugins.imagej2
org.hkijena.jipipe.plugins.imagejalgorithms
org.hkijena.jipipe.plugins.imagejdatatypes
org.hkijena.jipipe.plugins.imp
org.hkijena.jipipe.plugins.jsonextensionloader
org.hkijena.jipipe.plugins.multiparameters
org.hkijena.jipipe.plugins.napari
org.hkijena.jipipe.plugins.nodetemplate
org.hkijena.jipipe.plugins.omero
org.hkijena.jipipe.plugins.omnipose
org.hkijena.jipipe.plugins.opencv
org.hkijena.jipipe.plugins.parameters
org.hkijena.jipipe.plugins.pipelinerender
org.hkijena.jipipe.plugins.plots
org.hkijena.jipipe.plugins.processes
org.hkijena.jipipe.plugins.python
org.hkijena.jipipe.plugins.r
org.hkijena.jipipe.plugins.scene3d
org.hkijena.jipipe.plugins.settings
org.hkijena.jipipe.plugins.strings
org.hkijena.jipipe.plugins.tables
org.hkijena.jipipe.plugins.tools
org.hkijena.jipipe.plugins.utils

Uses of JIPipe in org.hkijena.jipipe

Methods in org.hkijena.jipipe that return JIPipe

Modifier and Type	Method and Description
static JIPipe	JIPipe.createInstance(org.scijava.Context context) Helper to create JIPipe from a context.
static JIPipe	JIPipe.createLibNoImageJInstance(List<Class<? extends JIPipeJavaPlugin>> plugins) Create a new JIPipe using initializeLibNoImageJ, which is suitable for using limited functions from within non-ImageJ applications.
static JIPipe	JIPipe.ensureInstance() Ensures that JIPipe is initialized and available.
static JIPipe	JIPipe.ensureInstance(org.scijava.Context context) Ensures that JIPipe is initialized and available.
static JIPipe	JIPipe.getInstance()
JIPipe	JIPipeService.ExtensionDiscoveredEvent.getRegistry()
JIPipe	JIPipeDefaultJavaPlugin.getRegistry()
JIPipe	JIPipeJsonPlugin.getRegistry()
JIPipe	JIPipeJavaPlugin.getRegistry() Returns the registry

Methods in org.hkijena.jipipe with parameters of type JIPipe

Modifier and Type	Method and Description
void	JIPipeJavaPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo) Registers custom modules into JIPipe
void	JIPipeDefaultJavaPlugin.setRegistry(JIPipe registry)
void	JIPipeJsonPlugin.setRegistry(JIPipe registry) Sets the registry instance
void	JIPipeJavaPlugin.setRegistry(JIPipe registry) Sets the registry

Constructors in org.hkijena.jipipe with parameters of type JIPipe

Constructor and Description
DatatypeRegisteredEvent(JIPipe registry, String id)
ExtensionDiscoveredEvent(JIPipe registry, JIPipeDependency extension)

Uses of JIPipe in org.hkijena.jipipe.api.compartments

Methods in org.hkijena.jipipe.api.compartments with parameters of type JIPipe

Modifier and Type	Method and Description
void	JIPipeCompartmentsPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.api.grouping

Methods in org.hkijena.jipipe.api.grouping with parameters of type JIPipe

Modifier and Type	Method and Description
void	GroupingPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.api.looping

Methods in org.hkijena.jipipe.api.looping with parameters of type JIPipe

Modifier and Type	Method and Description
void	LoopingPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.api.registries

Methods in org.hkijena.jipipe.api.registries that return JIPipe

Modifier and Type	Method and Description
JIPipe	JIPipeNodeTemplateRegistry.getJiPipe()
JIPipe	JIPipeArtifactsRegistry.getJiPipe()
JIPipe	JIPipeGraphEditorToolRegistry.getJiPipe()
JIPipe	JIPipeRecentProjectsRegistry.getJiPipe()
JIPipe	JIPipeProjectSettingsRegistry.getJIPipe()
JIPipe	JIPipePluginRegistry.getJIPipe()
JIPipe	JIPipeMetadataRegistry.getJIPipe()
JIPipe	JIPipeExternalEnvironmentRegistry.getJIPipe()
JIPipe	JIPipeUtilityRegistry.getJIPipe()
JIPipe	JIPipeDatatypeRegistry.getJIPipe()
JIPipe	JIPipeApplicationSettingsRegistry.getJIPipe()
JIPipe	JIPipeParameterTypeRegistry.getJIPipe()
JIPipe	JIPipeImageJAdapterRegistry.getJIPipe()
JIPipe	JIPipeExpressionRegistry.getJIPipe()
JIPipe	JIPipeNodeRegistry.getJIPipe()

Constructors in org.hkijena.jipipe.api.registries with parameters of type JIPipe

Constructor and Description
JIPipeApplicationSettingsRegistry(JIPipe jiPipe)
JIPipeArtifactsRegistry(JIPipe jiPipe)
JIPipeDatatypeRegistry(JIPipe jiPipe) Creates a new instance
JIPipeExpressionRegistry(JIPipe jiPipe)
JIPipeExternalEnvironmentRegistry(JIPipe jiPipe)
JIPipeGraphEditorToolRegistry(JIPipe jiPipe)
JIPipeImageJAdapterRegistry(JIPipe jiPipe)
JIPipeMetadataRegistry(JIPipe jiPipe)
JIPipeNodeRegistry(JIPipe jiPipe) Creates a new registry
JIPipeNodeTemplateRegistry(JIPipe jiPipe)
JIPipeParameterTypeRegistry(JIPipe jiPipe)
JIPipePluginRegistry(JIPipe jiPipe)
JIPipeProjectSettingsRegistry(JIPipe jiPipe)
JIPipeProjectTemplateRegistry(JIPipe jiPipe)
JIPipeRecentProjectsRegistry(JIPipe jiPipe)
JIPipeUtilityRegistry(JIPipe jiPipe)

Uses of JIPipe in org.hkijena.jipipe.desktop.api.registries

Methods in org.hkijena.jipipe.desktop.api.registries that return JIPipe

Modifier and Type	Method and Description
JIPipe	JIPipeCustomMenuRegistry.getJIPipe()

Constructors in org.hkijena.jipipe.desktop.api.registries with parameters of type JIPipe

Constructor and Description
JIPipeCustomMenuRegistry(JIPipe jiPipe)

Uses of JIPipe in org.hkijena.jipipe.desktop.commons.components

Methods in org.hkijena.jipipe.desktop.commons.components that return JIPipe

Modifier and Type	Method and Description
JIPipe	JIPipeDesktopSplashScreen.getJIPipe()

Methods in org.hkijena.jipipe.desktop.commons.components with parameters of type JIPipe

Modifier and Type	Method and Description
void	JIPipeDesktopSplashScreen.setJIPipe(JIPipe registry)

Uses of JIPipe in org.hkijena.jipipe.plugins.annotation

Methods in org.hkijena.jipipe.plugins.annotation with parameters of type JIPipe

Modifier and Type	Method and Description
void	AnnotationsPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.artifacts

Methods in org.hkijena.jipipe.plugins.artifacts with parameters of type JIPipe

Modifier and Type	Method and Description
void	ArtifactsPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.batchassistant

Methods in org.hkijena.jipipe.plugins.batchassistant with parameters of type JIPipe

Modifier and Type	Method and Description
void	BatchAssistantPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.cellpose

Methods in org.hkijena.jipipe.plugins.cellpose with parameters of type JIPipe

Modifier and Type	Method and Description
void	CellposePlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.clij2

Methods in org.hkijena.jipipe.plugins.clij2 with parameters of type JIPipe

Modifier and Type	Method and Description
void	CLIJPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.core

Methods in org.hkijena.jipipe.plugins.core with parameters of type JIPipe

Modifier and Type	Method and Description
void	CorePlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.dataenvironment

Methods in org.hkijena.jipipe.plugins.dataenvironment with parameters of type JIPipe

Modifier and Type	Method and Description
void	DataDirectoriesPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.dev

Methods in org.hkijena.jipipe.plugins.dev with parameters of type JIPipe

Modifier and Type	Method and Description
void	DevelopmentPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.expressions

Methods in org.hkijena.jipipe.plugins.expressions with parameters of type JIPipe

Modifier and Type	Method and Description
void	ExpressionPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.filesystem

Methods in org.hkijena.jipipe.plugins.filesystem with parameters of type JIPipe

Modifier and Type	Method and Description
void	FilesystemPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.forms

Methods in org.hkijena.jipipe.plugins.forms with parameters of type JIPipe

Modifier and Type	Method and Description
void	FormsPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.graphannotation

Methods in org.hkijena.jipipe.plugins.graphannotation with parameters of type JIPipe

Modifier and Type	Method and Description
void	GraphAnnotationPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.ij3d

Methods in org.hkijena.jipipe.plugins.ij3d with parameters of type JIPipe

Modifier and Type	Method and Description
void	IJ3DPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.ijfilaments

Methods in org.hkijena.jipipe.plugins.ijfilaments with parameters of type JIPipe

Modifier and Type	Method and Description
void	FilamentsPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.ijmultitemplatematching

Methods in org.hkijena.jipipe.plugins.ijmultitemplatematching with parameters of type JIPipe

Modifier and Type	Method and Description
void	MultiTemplateMatchingPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.ijocr

Methods in org.hkijena.jipipe.plugins.ijocr with parameters of type JIPipe

Modifier and Type	Method and Description
void	OCRPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.ijtrackmate

Methods in org.hkijena.jipipe.plugins.ijtrackmate with parameters of type JIPipe

Modifier and Type	Method and Description
void	TrackMatePlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.ijweka

Methods in org.hkijena.jipipe.plugins.ijweka with parameters of type JIPipe

Modifier and Type	Method and Description
void	WekaPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.ilastik

Methods in org.hkijena.jipipe.plugins.ilastik with parameters of type JIPipe

Modifier and Type	Method and Description
void	IlastikPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.imagej2

Methods in org.hkijena.jipipe.plugins.imagej2 with parameters of type JIPipe

Modifier and Type	Method and Description
void	ImageJ2Plugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.imagejalgorithms

Methods in org.hkijena.jipipe.plugins.imagejalgorithms with parameters of type JIPipe

Modifier and Type	Method and Description
void	ImageJAlgorithmsPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.imagejdatatypes

Methods in org.hkijena.jipipe.plugins.imagejdatatypes with parameters of type JIPipe

Modifier and Type	Method and Description
void	ImageJDataTypesPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.imp

Methods in org.hkijena.jipipe.plugins.imp with parameters of type JIPipe

Modifier and Type	Method and Description
void	ImpPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.jsonextensionloader

Methods in org.hkijena.jipipe.plugins.jsonextensionloader with parameters of type JIPipe

Modifier and Type	Method and Description
void	JsonExtensionLoaderPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)
void	JsonExtensionLoaderPlugin.setRegistry(JIPipe registry)

Constructors in org.hkijena.jipipe.plugins.jsonextensionloader with parameters of type JIPipe

Constructor and Description
JsonExtensionRegistrationTask(JIPipe registry, Path filePath, com.fasterxml.jackson.databind.JsonNode jsonNode)

Uses of JIPipe in org.hkijena.jipipe.plugins.multiparameters

Methods in org.hkijena.jipipe.plugins.multiparameters with parameters of type JIPipe

Modifier and Type	Method and Description
void	MultiParametersPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)
void	MultiParameterAlgorithmsPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.napari

Methods in org.hkijena.jipipe.plugins.napari with parameters of type JIPipe

Modifier and Type	Method and Description
void	NapariPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.nodetemplate

Methods in org.hkijena.jipipe.plugins.nodetemplate with parameters of type JIPipe

Modifier and Type	Method and Description
void	NodeTemplateBoxToolPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.omero

Methods in org.hkijena.jipipe.plugins.omero with parameters of type JIPipe

Modifier and Type	Method and Description
void	OMEROPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.omnipose

Methods in org.hkijena.jipipe.plugins.omnipose with parameters of type JIPipe

Modifier and Type	Method and Description
void	OmniposePlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.opencv

Methods in org.hkijena.jipipe.plugins.opencv with parameters of type JIPipe

Modifier and Type	Method and Description
void	OpenCvPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.parameters

Methods in org.hkijena.jipipe.plugins.parameters with parameters of type JIPipe

Modifier and Type	Method and Description
void	StandardParametersPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.pipelinerender

Methods in org.hkijena.jipipe.plugins.pipelinerender with parameters of type JIPipe

Modifier and Type	Method and Description
void	PipelineRenderPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.plots

Methods in org.hkijena.jipipe.plugins.plots with parameters of type JIPipe

Modifier and Type	Method and Description
void	PlotsPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.processes

Methods in org.hkijena.jipipe.plugins.processes with parameters of type JIPipe

Modifier and Type	Method and Description
void	ProcessesPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.python

Methods in org.hkijena.jipipe.plugins.python with parameters of type JIPipe

Modifier and Type	Method and Description
void	PythonPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)
void	CorePythonPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.r

Methods in org.hkijena.jipipe.plugins.r with parameters of type JIPipe

Modifier and Type	Method and Description
void	RPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.scene3d

Methods in org.hkijena.jipipe.plugins.scene3d with parameters of type JIPipe

Modifier and Type	Method and Description
void	Scene3DPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.settings

Methods in org.hkijena.jipipe.plugins.settings with parameters of type JIPipe

Modifier and Type	Method and Description
void	StandardSettingsPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.strings

Methods in org.hkijena.jipipe.plugins.strings with parameters of type JIPipe

Modifier and Type	Method and Description
void	StringsPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.tables

Methods in org.hkijena.jipipe.plugins.tables with parameters of type JIPipe

Modifier and Type	Method and Description
void	TablesPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.tools

Methods in org.hkijena.jipipe.plugins.tools with parameters of type JIPipe

Modifier and Type	Method and Description
void	ToolsPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)

Uses of JIPipe in org.hkijena.jipipe.plugins.utils

Methods in org.hkijena.jipipe.plugins.utils with parameters of type JIPipe

Modifier and Type	Method and Description
void	UtilitiesPlugin.register(JIPipe jiPipe, org.scijava.Context context, JIPipeProgressInfo progressInfo)