Uses of Class
org.hkijena.jipipe.api.annotation.JIPipeTextAnnotation

Packages that use JIPipeTextAnnotation

Package	Description
org.hkijena.jipipe.api.annotation
org.hkijena.jipipe.api.data
org.hkijena.jipipe.api.data.serialization
org.hkijena.jipipe.api.nodes.algorithm
org.hkijena.jipipe.api.nodes.iterationstep
org.hkijena.jipipe.plugins.annotation.algorithms
org.hkijena.jipipe.plugins.cellpose.legacy.algorithms
org.hkijena.jipipe.plugins.cellpose.utils
org.hkijena.jipipe.plugins.clij2.algorithms
org.hkijena.jipipe.plugins.expressions
org.hkijena.jipipe.plugins.filesystem.datasources
org.hkijena.jipipe.plugins.forms.algorithms
org.hkijena.jipipe.plugins.ij3d.nodes.roi3d
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.forms
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.io
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.measure
org.hkijena.jipipe.plugins.imagejalgorithms.utils
org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.io
org.hkijena.jipipe.plugins.imagejdatatypes.util
org.hkijena.jipipe.plugins.omero.parameters
org.hkijena.jipipe.plugins.parameters.library.primitives.optional
org.hkijena.jipipe.plugins.python
org.hkijena.jipipe.plugins.python.algorithms.jython
org.hkijena.jipipe.plugins.python.algorithms.python
org.hkijena.jipipe.plugins.r
org.hkijena.jipipe.plugins.scene3d.nodes
org.hkijena.jipipe.plugins.tables.datatypes
org.hkijena.jipipe.plugins.utils.algorithms
org.hkijena.jipipe.plugins.utils.algorithms.datatable

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.api.annotation

Methods in org.hkijena.jipipe.api.annotation that return types with arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
static List<JIPipeTextAnnotation>	JIPipeTextAnnotation.extractAnnotationsFromPython(org.python.core.PyDictionary annotationDict) Sets annotations from a Python dictionary
static List<JIPipeTextAnnotation>	JIPipeTextAnnotation.mapToAnnotationList(Map<String,String> map) Converts an annotation map to a list
List<JIPipeTextAnnotation>	JIPipeTextAnnotationMergeMode.merge(Collection<JIPipeTextAnnotation> annotations) Ensures that a list of annotations has unique names.

Methods in org.hkijena.jipipe.api.annotation with parameters of type JIPipeTextAnnotation

Modifier and Type	Method and Description
int	JIPipeTextAnnotation.compareTo(JIPipeTextAnnotation o)
boolean	JIPipeTextAnnotation.nameEquals(JIPipeTextAnnotation other) Returns true if the names are equal
static boolean	JIPipeTextAnnotation.nameEquals(JIPipeTextAnnotation lhs, JIPipeTextAnnotation rhs) Returns true if both have the same name.

Method parameters in org.hkijena.jipipe.api.annotation with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
static Map<String,String>	JIPipeTextAnnotation.annotationListToMap(Collection<JIPipeTextAnnotation> annotations, JIPipeTextAnnotationMergeMode mergeStrategy) Converts a set of annotations to a map
static org.python.core.PyDictionary	JIPipeTextAnnotation.annotationListToPython(Collection<JIPipeTextAnnotation> annotations) Converts a list of annotations into a Python dictionary
static org.python.core.PyDictionary	JIPipeTextAnnotation.annotationMapToPython(Map<String,JIPipeTextAnnotation> annotationMap) Converts a map of annotations into a Python dictionary
List<JIPipeTextAnnotation>	JIPipeTextAnnotationMergeMode.merge(Collection<JIPipeTextAnnotation> annotations) Ensures that a list of annotations has unique names.
void	JIPipeTextAnnotationMergeMode.mergeInto(Map<String,JIPipeTextAnnotation> target, Collection<JIPipeTextAnnotation> annotations) Ensures that a list of annotations has unique names.
void	JIPipeTextAnnotationMergeMode.mergeInto(Map<String,JIPipeTextAnnotation> target, Collection<JIPipeTextAnnotation> annotations) Ensures that a list of annotations has unique names.
static void	JIPipeTextAnnotation.setAnnotationsFromPython(org.python.core.PyDictionary annotationDict, Map<String,JIPipeTextAnnotation> target) Sets annotations from a Python dictionary

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.api.data

Methods in org.hkijena.jipipe.api.data that return JIPipeTextAnnotation

Modifier and Type	Method and Description
JIPipeTextAnnotation	JIPipeDataTable.getTextAnnotation(int row, int column) Gets an annotation at a specific index
JIPipeTextAnnotation	JIPipeDataTable.getTextAnnotation(int row, String column) Gets an annotation at a specific column
JIPipeTextAnnotation	JIPipeDataTable.getTextAnnotationOr(int row, String name, JIPipeTextAnnotation orElse) Returns the annotation of specified type or the alternative value.

Methods in org.hkijena.jipipe.api.data that return types with arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
List<JIPipeTextAnnotation>	JIPipeDataTable.getAllTextAnnotations() Gets the list of all text annotations
Map<String,JIPipeTextAnnotation>	JIPipeDataTable.getAnnotationMap(int row) Deprecated. Use getTextAnnotationMap instead
protected List<JIPipeTextAnnotation>	JIPipeDataTable.getOrCreateTextAnnotationColumnArray_(String columnName) Gets the annotation column or creates it Ensures that the output size is equal to getRowCount() NOT THREAD-SAFE, REQUIRES A WRITE LOCK!
protected List<JIPipeTextAnnotation>	JIPipeDataTable.getTextAnnotationColumnArray_(String columnName) Gets the annotation column or creates it DOES NOT ENSURE that the output size is equal to getRowCount() NOT THREAD-SAFE, REQUIRES A WRITE LOCK!
Map<String,JIPipeTextAnnotation>	JIPipeDataTable.getTextAnnotationMap(int row) Returns annotations of a row as map
List<JIPipeTextAnnotation>	JIPipeDataTable.getTextAnnotations(Collection<Integer> rows) Gets the list of annotations for specific data rows
List<JIPipeTextAnnotation>	JIPipeDataTable.getTextAnnotations(int row) Gets the list of annotations for a specific data row

Methods in org.hkijena.jipipe.api.data with parameters of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	JIPipeDataTable.addAnnotationToAllData(JIPipeTextAnnotation annotation, boolean overwrite) Deprecated. use addTextAnnotationToAllData()
void	JIPipeDataTable.addTextAnnotationToAllData(JIPipeTextAnnotation annotation, boolean overwrite) Adds an annotation to all existing data
JIPipeTextAnnotation	JIPipeDataTable.getTextAnnotationOr(int row, String name, JIPipeTextAnnotation orElse) Returns the annotation of specified type or the alternative value.
void	JIPipeDataTable.setTextAnnotation(int row, JIPipeTextAnnotation annotation) Sets a text annotation

Method parameters in org.hkijena.jipipe.api.data with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	JIPipeDataTable.addData(JIPipeDataItemStore virtualData, List<JIPipeTextAnnotation> annotations, JIPipeTextAnnotationMergeMode mergeStrategy, JIPipeDataContext context, JIPipeProgressInfo progressInfo) Adds data as virtual data reference
void	JIPipeDataTable.addData(JIPipeDataItemStore virtualData, List<JIPipeTextAnnotation> annotations, JIPipeTextAnnotationMergeMode mergeStrategy, JIPipeProgressInfo progressInfo) Deprecated. use the overload with the context
void	JIPipeDataTable.addData(JIPipeDataItemStore virtualData, List<JIPipeTextAnnotation> annotations, JIPipeTextAnnotationMergeMode mergeStrategy, List<JIPipeDataAnnotation> dataAnnotations, JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy, JIPipeDataContext context, JIPipeProgressInfo progressInfo) Adds data as virtual data reference
void	JIPipeDataTable.addData(JIPipeDataItemStore virtualData, List<JIPipeTextAnnotation> annotations, JIPipeTextAnnotationMergeMode mergeStrategy, List<JIPipeDataAnnotation> dataAnnotations, JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy, JIPipeProgressInfo progressInfo) Deprecated. use the overload with the context
void	JIPipeDataTable.addData(JIPipeData value, List<JIPipeTextAnnotation> annotations, JIPipeTextAnnotationMergeMode mergeStrategy, JIPipeDataContext context, JIPipeProgressInfo progressInfo) Adds a data row
void	JIPipeDataTable.addData(JIPipeData value, List<JIPipeTextAnnotation> annotations, JIPipeTextAnnotationMergeMode mergeStrategy, JIPipeProgressInfo progressInfo) Deprecated. use the overload with the context
void	JIPipeDataTable.addData(JIPipeData data, List<JIPipeTextAnnotation> annotations, JIPipeTextAnnotationMergeMode mergeStrategy, List<JIPipeDataAnnotation> dataAnnotations, JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy, JIPipeDataContext context, JIPipeProgressInfo progressInfo) Adds data as virtual data reference
void	JIPipeDataTable.addData(JIPipeData data, List<JIPipeTextAnnotation> annotations, JIPipeTextAnnotationMergeMode mergeStrategy, List<JIPipeDataAnnotation> dataAnnotations, JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy, JIPipeProgressInfo progressInfo) Deprecated. use the overload with the context

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.api.data.serialization

Methods in org.hkijena.jipipe.api.data.serialization that return types with arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
List<JIPipeTextAnnotation>	JIPipeDataTableRowInfo.getTextAnnotations()

Method parameters in org.hkijena.jipipe.api.data.serialization with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	JIPipeDataTableRowInfo.setAnnotations(List<JIPipeTextAnnotation> annotations) Compatibility function to allow reading tables in an older format
void	JIPipeDataTableRowInfo.setTextAnnotations(List<JIPipeTextAnnotation> textAnnotations) Sets annotations
void	JIPipeDataTableRowInfo.setTraits(List<JIPipeTextAnnotation> annotations) Compatibility function to allow reading tables in an older format

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.api.nodes.algorithm

Method parameters in org.hkijena.jipipe.api.nodes.algorithm with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	JIPipeIteratingMissingDataGeneratorAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	JIPipeSingleIterationAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	JIPipeMergingAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	JIPipeMissingDataGeneratorAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	JIPipeSimpleIteratingAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	JIPipeIteratingAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
abstract void	JIPipeParameterSlotAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations) Runs a parameter set iteration

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.api.nodes.iterationstep

Methods in org.hkijena.jipipe.api.nodes.iterationstep that return JIPipeTextAnnotation

Modifier and Type	Method and Description
JIPipeTextAnnotation	JIPipeMultiIterationStep.getMergedTextAnnotation(String name) Returns a merged annotation
JIPipeTextAnnotation	JIPipeSingleIterationStep.getMergedTextAnnotation(String name) Returns a merged annotation

Methods in org.hkijena.jipipe.api.nodes.iterationstep that return types with arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
List<JIPipeTextAnnotation>	JIPipeMultiIterationStep.getInputTextAnnotations(JIPipeDataSlot slot) Gets the original annotations of given slot This returns all annotations (of all rows)
List<JIPipeTextAnnotation>	JIPipeSingleIterationStep.getInputTextAnnotations(JIPipeDataSlot slot) Gets the original annotations of given slot
List<JIPipeTextAnnotation>	JIPipeMultiIterationStep.getInputTextAnnotations(JIPipeDataSlot slot, Collection<Integer> rows) Gets the original annotations of given slot
List<JIPipeTextAnnotation>	JIPipeMultiIterationStep.getInputTextAnnotations(JIPipeDataSlot slot, int row) Gets the original annotations of given slot
List<JIPipeTextAnnotation>	JIPipeMultiIterationStep.getInputTextAnnotations(String slotName) Gets the original annotations of given slot This returns all annotations (of all rows)
List<JIPipeTextAnnotation>	JIPipeSingleIterationStep.getInputTextAnnotations(String slotName) Gets the original annotations of given slot
List<JIPipeTextAnnotation>	JIPipeMultiIterationStep.getInputTextAnnotations(String slotName, Collection<Integer> rows) Gets the original annotations of given slot
List<JIPipeTextAnnotation>	JIPipeMultiIterationStep.getInputTextAnnotations(String slotName, int row) Gets the original annotations of given slot
Map<String,JIPipeTextAnnotation>	JIPipeMultiIterationStep.getMergedTextAnnotations() Gets the list of annotations.
Map<String,JIPipeTextAnnotation>	JIPipeSingleIterationStep.getMergedTextAnnotations() Gets the list of annotations.

Methods in org.hkijena.jipipe.api.nodes.iterationstep with parameters of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	JIPipeMultiIterationStep.addMergedTextAnnotation(JIPipeTextAnnotation annotation, JIPipeTextAnnotationMergeMode strategy) Adds an annotation to the annotation list
void	JIPipeSingleIterationStep.addMergedTextAnnotation(JIPipeTextAnnotation annotation, JIPipeTextAnnotationMergeMode strategy) Adds an annotation to the annotation list

Method parameters in org.hkijena.jipipe.api.nodes.iterationstep with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	JIPipeSingleIterationStep.addMergedTextAnnotations(Collection<JIPipeTextAnnotation> annotations, JIPipeTextAnnotationMergeMode strategy) Adds annotations to the merged annotation storage of this interface.
void	JIPipeMultiIterationStep.addMergedTextAnnotations(List<JIPipeTextAnnotation> annotations, JIPipeTextAnnotationMergeMode strategy) Adds annotations to the merged annotation storage of this interface.
void	JIPipeMultiIterationStep.addOutputData(JIPipeOutputDataSlot slot, JIPipeDataItemStore data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode mergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
void	JIPipeMultiIterationStep.addOutputData(JIPipeOutputDataSlot slot, JIPipeDataItemStore data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode annotationMergeStrategy, List<JIPipeDataAnnotation> additionalDataAnnotations, JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy, JIPipeProgressInfo progressInfo)
void	JIPipeSingleIterationStep.addOutputData(JIPipeOutputDataSlot slot, JIPipeDataItemStore virtualData, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode mergeStrategy, List<JIPipeDataAnnotation> additionalDataAnnotations, JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
void	JIPipeMultiIterationStep.addOutputData(JIPipeOutputDataSlot slot, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode mergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
void	JIPipeSingleIterationStep.addOutputData(JIPipeOutputDataSlot slot, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode mergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
void	JIPipeMultiIterationStep.addOutputData(JIPipeOutputDataSlot slot, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode mergeStrategy, List<JIPipeDataAnnotation> additionalDataAnnotations, JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
void	JIPipeSingleIterationStep.addOutputData(JIPipeOutputDataSlot slot, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode mergeStrategy, List<JIPipeDataAnnotation> additionalDataAnnotations, JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
void	JIPipeMultiIterationStep.addOutputData(String slotName, JIPipeDataItemStore data, JIPipeTextAnnotationMergeMode annotationMergeStrategy, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations should be set up till this point
void	JIPipeMultiIterationStep.addOutputData(String slotName, JIPipeDataItemStore data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations should be set up till this point
void	JIPipeMultiIterationStep.addOutputData(String slotName, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations should be set up till this point
void	JIPipeMultiIterationStep.addOutputData(String slotName, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode annotationMergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations should be set up till this point
void	JIPipeSingleIterationStep.addOutputData(String slotName, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode mergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations should be set up till this point
void	JIPipeMultiIterationStep.addOutputData(String slotName, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode mergeStrategy, List<JIPipeDataAnnotation> additionalDataAnnotations, JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations should be set up till this point
void	JIPipeSingleIterationStep.addOutputData(String slotName, JIPipeData data, List<JIPipeTextAnnotation> additionalAnnotations, JIPipeTextAnnotationMergeMode mergeStrategy, List<JIPipeDataAnnotation> additionalDataAnnotations, JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy, JIPipeProgressInfo progressInfo) Writes output data into the provided slot Please note that annotations should be set up till this point
void	JIPipeMultiIterationStep.setMergedTextAnnotations(Map<String,JIPipeTextAnnotation> annotations)
void	JIPipeSingleIterationStep.setMergedTextAnnotations(Map<String,JIPipeTextAnnotation> annotations)

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.plugins.annotation.algorithms

Method parameters in org.hkijena.jipipe.plugins.annotation.algorithms with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
String	AnnotationFilterExpression.generateAnnotationValue(Collection<JIPipeTextAnnotation> annotations, JIPipeExpressionVariablesMap variableSet) Generates an annotation value
void	RemoveArrayAnnotationsAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	GenerateRandomUniqueAnnotation.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	RemoveNAAnnotationColumnsAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	AnnotateWithAnnotationTable.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
boolean	AnnotationFilterExpression.test(Collection<JIPipeTextAnnotation> annotations, String dataString, JIPipeExpressionVariablesMap variables) Evaluates the expression as boolean

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.plugins.cellpose.legacy.algorithms

Method parameters in org.hkijena.jipipe.plugins.cellpose.legacy.algorithms with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
static void	Cellpose1InferenceAlgorithm.extractCellposeOutputs(JIPipeMultiIterationStep iterationStep, JIPipeProgressInfo progressInfo, Path outputRoiOutline, Path outputLabels, Path outputFlows, Path outputProbabilities, Path outputStyles, List<JIPipeTextAnnotation> annotationList, CellposeSegmentationOutputSettings_Old outputParameters) Deprecated.

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.plugins.cellpose.utils

Methods in org.hkijena.jipipe.plugins.cellpose.utils that return types with arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
List<JIPipeTextAnnotation>	CellposeModelInfo.getAnnotationList()

Method parameters in org.hkijena.jipipe.plugins.cellpose.utils with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
static CellposeModelInfo	CellposeUtils.createModelInfo(List<JIPipeTextAnnotation> textAnnotations, CellposeModelData modelData, Path workDirectory, JIPipeProgressInfo modelProgress)
void	CellposeModelInfo.setAnnotationList(List<JIPipeTextAnnotation> annotationList)

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.plugins.clij2.algorithms

Method parameters in org.hkijena.jipipe.plugins.clij2.algorithms with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	Clij2ExecuteKernelIterating.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	Clij2ExecuteKernelSimpleIterating.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.plugins.expressions

Methods in org.hkijena.jipipe.plugins.expressions that return JIPipeTextAnnotation

Modifier and Type	Method and Description
JIPipeTextAnnotation	NamedTextAnnotationGeneratorExpression.generateTextAnnotation(Collection<JIPipeTextAnnotation> annotations, JIPipeExpressionVariablesMap variableSet) Generates an annotation
JIPipeTextAnnotation	AnnotationQueryExpression.queryFirst(Collection<JIPipeTextAnnotation> annotations) Generates an annotation value

Methods in org.hkijena.jipipe.plugins.expressions that return types with arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
List<JIPipeTextAnnotation>	AnnotationQueryExpression.queryAll(Collection<JIPipeTextAnnotation> annotations) Returns all annotations that match the query

Method parameters in org.hkijena.jipipe.plugins.expressions with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
String	AnnotationGeneratorExpression.generateAnnotationValue(Collection<JIPipeTextAnnotation> annotations, JIPipeExpressionVariablesMap variableSet) Generates an annotation value
Path	DataExportExpressionParameter.generatePath(Path dataDir, Path projectDir, Map<String,Path> projectDataDirs, String dataString, int dataRow, List<JIPipeTextAnnotation> annotationList)
JIPipeTextAnnotation	NamedTextAnnotationGeneratorExpression.generateTextAnnotation(Collection<JIPipeTextAnnotation> annotations, JIPipeExpressionVariablesMap variableSet) Generates an annotation
JIPipeExpressionVariablesMap	JIPipeExpressionVariablesMap.putAnnotations(List<JIPipeTextAnnotation> textAnnotations) Puts annotations into the variables
JIPipeExpressionVariablesMap	JIPipeExpressionVariablesMap.putAnnotations(Map<String,JIPipeTextAnnotation> mergedTextAnnotations) Puts annotations into the variables
JIPipeExpressionVariablesMap	JIPipeExpressionVariablesMap.putAnnotationsIfAbsent(Collection<JIPipeTextAnnotation> textAnnotations)
List<JIPipeTextAnnotation>	AnnotationQueryExpression.queryAll(Collection<JIPipeTextAnnotation> annotations) Returns all annotations that match the query
JIPipeTextAnnotation	AnnotationQueryExpression.queryFirst(Collection<JIPipeTextAnnotation> annotations) Generates an annotation value
boolean	AnnotationGeneratorExpression.test(Collection<JIPipeTextAnnotation> annotations, String dataString, JIPipeExpressionVariablesMap variables) Evaluates the expression as boolean

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.plugins.filesystem.datasources

Method parameters in org.hkijena.jipipe.plugins.filesystem.datasources with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	TemporaryFolderDataSource.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	TemporaryFileDataSource.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.plugins.forms.algorithms

Method parameters in org.hkijena.jipipe.plugins.forms.algorithms with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
static void	IteratingFormProcessorAlgorithm.extractRestoredAnnotations(JIPipeMultiIterationStep iterationStep, Map<String,JIPipeTextAnnotation> preFormAnnotations, JIPipeDataSlot inputSlot, int row, List<JIPipeTextAnnotation> annotations) Extracts original annotations into the annotation list
static void	IteratingFormProcessorAlgorithm.extractRestoredAnnotations(JIPipeMultiIterationStep iterationStep, Map<String,JIPipeTextAnnotation> preFormAnnotations, JIPipeDataSlot inputSlot, int row, List<JIPipeTextAnnotation> annotations) Extracts original annotations into the annotation list

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d

Method parameters in org.hkijena.jipipe.plugins.ij3d.nodes.roi3d with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	ExportROI3DAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations) Deprecated.

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.forms

Method parameters in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.forms with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	DrawMaskAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	DrawROIAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.io

Method parameters in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.io with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	ExportROIAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations) Deprecated.
void	ExportImageAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations) Deprecated.
void	ExportTableAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations) Deprecated.
void	ExportImageDirectorySlotAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.measure

Method parameters in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.measure with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	CountROIAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.plugins.imagejalgorithms.utils

Methods in org.hkijena.jipipe.plugins.imagejalgorithms.utils that return types with arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
List<JIPipeTextAnnotation>	MontageCreator.InputEntry.getAnnotationList()

Method parameters in org.hkijena.jipipe.plugins.imagejalgorithms.utils with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
ij.ImagePlus	MontageCreator.createMontage(List<MontageCreator.InputEntry> inputEntries, List<JIPipeTextAnnotation> annotations, JIPipeExpressionVariablesMap additionalVariables, JIPipeProgressInfo progressInfo)

Constructor parameters in org.hkijena.jipipe.plugins.imagejalgorithms.utils with type arguments of type JIPipeTextAnnotation

Constructor and Description
InputEntry(ij.ImagePlus imagePlus, List<JIPipeTextAnnotation> annotationList, JIPipeExpressionVariablesMap additionalVariables)

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.io

Method parameters in org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.io with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	BioFormatsExporterAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations) Deprecated.

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.plugins.imagejdatatypes.util

Method parameters in org.hkijena.jipipe.plugins.imagejdatatypes.util with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
static void	ImagePlusPropertiesExpressionParameterVariablesInfo.extractValues(JIPipeExpressionVariablesMap variables, ij.ImagePlus imagePlus, Collection<JIPipeTextAnnotation> annotations)

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.plugins.omero.parameters

Method parameters in org.hkijena.jipipe.plugins.omero.parameters with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	OMEROKeyValuePairToAnnotationImporter.createAnnotations(List<JIPipeTextAnnotation> target, omero.gateway.facility.MetadataFacility metadata, omero.gateway.SecurityContext context, omero.gateway.model.DataObject dataObject)
void	OMEROTagToAnnotationImporter.createAnnotations(List<JIPipeTextAnnotation> target, omero.gateway.facility.MetadataFacility metadata, omero.gateway.SecurityContext context, omero.gateway.model.DataObject dataObject)
void	AnnotationsToOMEROKeyValuePairExporter.createKeyValuePairs(Map<String,String> target, Collection<JIPipeTextAnnotation> annotations)
void	AnnotationsToOMEROTagExporter.createTags(Set<String> target, Collection<JIPipeTextAnnotation> annotations)

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.plugins.parameters.library.primitives.optional

Methods in org.hkijena.jipipe.plugins.parameters.library.primitives.optional that return JIPipeTextAnnotation

Modifier and Type	Method and Description
JIPipeTextAnnotation	OptionalTextAnnotationNameParameter.createAnnotation(Collection<String> values) Creates a new annotation with the defined name and value
JIPipeTextAnnotation	OptionalTextAnnotationNameParameter.createAnnotation(String value) Creates a new annotation with the defined name and value
JIPipeTextAnnotation	OptionalTextAnnotationNameParameter.createAnnotation(String[] values) Creates a new annotation with the defined name and value

Method parameters in org.hkijena.jipipe.plugins.parameters.library.primitives.optional with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	OptionalTextAnnotationNameParameter.addAnnotationIfEnabled(Collection<JIPipeTextAnnotation> annotations, Collection<String> values) Adds the annotation with given value of the parameter is enabled
void	OptionalTextAnnotationNameParameter.addAnnotationIfEnabled(Collection<JIPipeTextAnnotation> annotations, String value) Adds the annotation with given value of the parameter is enabled
void	OptionalTextAnnotationNameParameter.addAnnotationIfEnabled(Collection<JIPipeTextAnnotation> annotations, String[] values) Adds the annotation with given value of the parameter is enabled

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.plugins.python

Method parameters in org.hkijena.jipipe.plugins.python with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
static void	PythonUtils.annotationsToPython(StringBuilder code, Collection<JIPipeTextAnnotation> annotations) Converts annotations into Python code.

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.plugins.python.algorithms.jython

Method parameters in org.hkijena.jipipe.plugins.python.algorithms.jython with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	JythonScriptAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.plugins.python.algorithms.python

Method parameters in org.hkijena.jipipe.plugins.python.algorithms.python with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	PythonScriptAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.plugins.r

Method parameters in org.hkijena.jipipe.plugins.r with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
static void	RUtils.textAnnotationsToR(StringBuilder code, Collection<JIPipeTextAnnotation> annotations) Converts annotations into R code.

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.plugins.scene3d.nodes

Method parameters in org.hkijena.jipipe.plugins.scene3d.nodes with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	ExportScene3DToColladaAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations) Deprecated.

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.plugins.tables.datatypes

Methods in org.hkijena.jipipe.plugins.tables.datatypes that return types with arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
List<JIPipeTextAnnotation>	AnnotationTableData.getAnnotations(int row) Gets all annotations at the specified row

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.plugins.utils.algorithms

Method parameters in org.hkijena.jipipe.plugins.utils.algorithms with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	SelectDataTableRowsAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	DataSlicer.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	SortRowsByAnnotationsAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	SortRowsByExpressionAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)
void	SleepAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)

Uses of JIPipeTextAnnotation in org.hkijena.jipipe.plugins.utils.algorithms.datatable

Method parameters in org.hkijena.jipipe.plugins.utils.algorithms.datatable with type arguments of type JIPipeTextAnnotation

Modifier and Type	Method and Description
void	ExtractTableAlgorithm.runParameterSet(JIPipeGraphNodeRunContext runContext, JIPipeProgressInfo progressInfo, List<JIPipeTextAnnotation> parameterAnnotations)