org.hkijena.jipipe.extensions.imageviewer

Class ImageViewerPanel

java.lang.Object

java.awt.Component

java.awt.Container

javax.swing.JComponent

javax.swing.JPanel

org.hkijena.jipipe.extensions.imageviewer.ImageViewerPanel

All Implemented Interfaces:

ImageObserver, MenuContainer, Serializable, Accessible, JIPipeWorkbenchAccess

public class ImageViewerPanel
extends JPanel
implements JIPipeWorkbenchAccess

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JPanel

JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields inherited from class javax.swing.JComponent

listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors

Constructor and Description
ImageViewerPanel(JIPipeWorkbench workbench) Initializes a new image viewer

Method Summary

Modifier and Type	Method and Description
void	addToOpenPanels()
void	copyCurrentSliceToClipboard()
void	dispose()
void	exportAllSlicesToPNG()
void	exportCurrentSliceToPNG()
void	exportVideo()
<T extends ImageViewerPanelPlugin> T	findPlugin(Class<T> klass)
void	fitImageToScreen()
ij.process.ImageProcessor	generateSlice(int c, int z, int t, double magnification, boolean withPostprocessing) Generates a slice
static ImageViewerPanel	getActiveViewerPanel()
JSpinner	getAnimationSpeedControl()
ImageViewerPanelCanvas	getCanvas()
ij.process.ImageProcessor	getCurrentSlice()
ImageSliceIndex	getCurrentSliceIndex() Returns the currently viewed slice position
ij.process.ImageStatistics	getCurrentSliceStats()
ImageCanvas	getExportDummyCanvas() A dummy ImageCanvas that is needed by some visualization algorithms for magnification Its magnification should be permanently 1.0
double	getExportedMagnification() Returns the magnification that export/render methods should apply
ij.ImagePlus	getImage()
static Set<ImageViewerPanel>	getOpenViewerPanels()
<T extends ImageViewerPanelPlugin> T	getPlugin(Class<T> klass)
List<ImageViewerPanelPlugin>	getPlugins()
ImageViewerUISettings	getSettings()
ij.process.ImageStatistics	getSliceStats(ImageSliceIndex sliceIndex)
JToolBar	getToolBar()
JIPipeWorkbench	getWorkbench()
ImageCanvas	getZoomedDummyCanvas() A dummy ImageCanvas that is needed by some visualization algorithms for magnification It is updated by ImageViewerPanelCanvas Please do not make any changes to the display properties here, as the image viewer has its own canvas
void	refreshFormPanel()
void	refreshImageInfo()
void	refreshSlice()
void	setAsActiveViewerPanel()
void	setImage(ij.ImagePlus image)
void	setPlugins(List<ImageViewerPanelPlugin> plugins)
static ImageViewerPanel	showImage(JIPipeWorkbench workbench, ij.ImagePlus image, String title) Opens the image in a new frame
void	uploadSliceToCanvas()

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

ImageViewerPanel

public ImageViewerPanel(JIPipeWorkbench workbench)

Initializes a new image viewer

Parameters:

workbench - the workbench. Use JIPipeDummyWorkbench if you do not have access to one.

Method Detail

getActiveViewerPanel

public static ImageViewerPanel getActiveViewerPanel()

getOpenViewerPanels

public static Set<ImageViewerPanel> getOpenViewerPanels()

showImage

public static ImageViewerPanel showImage(JIPipeWorkbench workbench,
                                         ij.ImagePlus image,
                                         String title)

Opens the image in a new frame

Parameters:

workbench - the workbench

image - the image

title - the title

Returns:

the panel

getWorkbench

public JIPipeWorkbench getWorkbench()

Specified by:

getWorkbench in interface JIPipeWorkbenchAccess

getSettings

public ImageViewerUISettings getSettings()

getPlugin

public <T extends ImageViewerPanelPlugin> T getPlugin(Class<T> klass)

getPlugins

public List<ImageViewerPanelPlugin> getPlugins()

setPlugins

public void setPlugins(List<ImageViewerPanelPlugin> plugins)

findPlugin

public <T extends ImageViewerPanelPlugin> T findPlugin(Class<T> klass)

setAsActiveViewerPanel

public void setAsActiveViewerPanel()

addToOpenPanels

public void addToOpenPanels()

dispose

public void dispose()

getToolBar

public JToolBar getToolBar()

getExportedMagnification

public double getExportedMagnification()

Returns the magnification that export/render methods should apply

Returns:

the magnification

exportCurrentSliceToPNG

public void exportCurrentSliceToPNG()

copyCurrentSliceToClipboard

public void copyCurrentSliceToClipboard()

exportAllSlicesToPNG

public void exportAllSlicesToPNG()

exportVideo

public void exportVideo()

getZoomedDummyCanvas

public ImageCanvas getZoomedDummyCanvas()

A dummy ImageCanvas that is needed by some visualization algorithms for magnification It is updated by ImageViewerPanelCanvas Please do not make any changes to the display properties here, as the image viewer has its own canvas

Returns:

the dummy canvas

getExportDummyCanvas

public ImageCanvas getExportDummyCanvas()

A dummy ImageCanvas that is needed by some visualization algorithms for magnification Its magnification should be permanently 1.0

Returns:

the dummy canvas

getImage

public ij.ImagePlus getImage()

setImage

public void setImage(ij.ImagePlus image)

refreshFormPanel

public void refreshFormPanel()

getAnimationSpeedControl

public JSpinner getAnimationSpeedControl()

getCurrentSliceIndex

public ImageSliceIndex getCurrentSliceIndex()

Returns the currently viewed slice position

Returns:

the slice position. Zero-based indices

refreshImageInfo

public void refreshImageInfo()

refreshSlice

public void refreshSlice()

generateSlice

public ij.process.ImageProcessor generateSlice(int c,
                                               int z,
                                               int t,
                                               double magnification,
                                               boolean withPostprocessing)

Generates a slice

Parameters:

c - the channel location

z - the depth location

t - the frame location

magnification - the magnification

withPostprocessing - if postprocessing (export postprocessing) should be applied

Returns:

the new slice

uploadSliceToCanvas

public void uploadSliceToCanvas()

getCanvas

public ImageViewerPanelCanvas getCanvas()

fitImageToScreen

public void fitImageToScreen()

getCurrentSlice

public ij.process.ImageProcessor getCurrentSlice()

getCurrentSliceStats

public ij.process.ImageStatistics getCurrentSliceStats()

getSliceStats

public ij.process.ImageStatistics getSliceStats(ImageSliceIndex sliceIndex)