| Modifier and Type | Method and Description |
|---|---|
static <T extends JIPipeData> |
JIPipe.createData(Class<T> klass,
Object... constructorParameters)
Instantiates a data class with the provided parameters
This method is helpful if output data is constructed based on slot types
|
static <T extends JIPipeData> |
JIPipe.importData(JIPipeReadDataStorage storage,
Class<T> klass,
JIPipeProgressInfo progressInfo)
Imports data of given data type from its output folder.
|
| Modifier and Type | Method and Description |
|---|---|
Set<Class<? extends JIPipeData>> |
JIPipeRegistryIssues.getErroneousDataTypes() |
| Modifier and Type | Method and Description |
|---|---|
void |
JIPipeDefaultJavaExtension.configureDefaultImageJAdapters(Class<? extends JIPipeData> dataClass,
ImageJDataImporter defaultImporter,
ImageJDataExporter defaultExporter)
Sets the default ImageJ adapters
|
void |
JIPipeDefaultJavaExtension.configureDefaultImageJAdapters(Class<? extends JIPipeData> dataClass,
String defaultImporterId,
String defaultExporterId)
Sets the default ImageJ adapters
|
void |
JIPipeDefaultJavaExtension.registerDatatype(String id,
Class<? extends JIPipeData> dataClass,
URL icon,
Class<? extends JIPipeResultDataSlotRowUI> rowUI,
Class<? extends JIPipeResultDataSlotPreview> cellUI,
JIPipeDataOperation... operations)
Registers a new data type
|
void |
JIPipeDefaultJavaExtension.registerDatatype(String id,
Class<? extends JIPipeData> dataClass,
URL icon,
JIPipeDataOperation... operations)
Registers a new data type
|
void |
JIPipeRegistryIssues.setErroneousDataTypes(Set<Class<? extends JIPipeData>> erroneousDataTypes) |
| Modifier and Type | Method and Description |
|---|---|
<T extends JIPipeData> |
JIPipeDataAnnotation.getData(Class<T> klass,
JIPipeProgressInfo progressInfo) |
| Modifier and Type | Method and Description |
|---|---|
Class<? extends JIPipeData> |
JIPipeDataAnnotation.getDataClass() |
| Constructor and Description |
|---|
JIPipeDataAnnotation(String name,
JIPipeData data) |
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeCompartmentOutputData
Represents an
JIPipeCompartmentOutput in the compartment graph. |
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
JIPipeCompartmentOutputData.duplicate(JIPipeProgressInfo progressInfo) |
| Modifier and Type | Method and Description |
|---|---|
default JIPipeData |
ImageJDataImporter.importData(Object object,
ImageJImportParameters parameters,
JIPipeProgressInfo progressInfo)
Imports JIPipe data from ImageJ.
|
| Modifier and Type | Method and Description |
|---|---|
Class<? extends JIPipeData> |
EmptyImageJDataExporter.getExportedJIPipeDataType() |
Class<? extends JIPipeData> |
ImageJDataExporter.getExportedJIPipeDataType() |
Class<? extends JIPipeData> |
DataTableImageJDataExporter.getExportedJIPipeDataType() |
Class<? extends JIPipeData> |
ImageJDataImporter.getImportedJIPipeDataType() |
Class<? extends JIPipeData> |
EmptyImageJDataImporter.getImportedJIPipeDataType() |
Class<? extends JIPipeData> |
DataTableImageJDataImporter.getImportedJIPipeDataType() |
| Modifier and Type | Method and Description |
|---|---|
default List<Object> |
ImageJDataExporter.exportData(JIPipeData data,
ImageJExportParameters parameters,
JIPipeProgressInfo progressInfo)
Converts a JIPipe data type to its corresponding ImageJ data type
|
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeDataSlot
A data slot holds an
JIPipeData instance. |
class |
JIPipeDataTable |
class |
JIPipeEmptyData |
class |
JIPipeInputDataSlot |
class |
JIPipeOutputDataSlot |
class |
JIPipeSerializedJsonObjectData
A base class for
JIPipeData that is serialized from/to JSON for convenience
Ensure that this data type has a copy constructor for the duplicate() function. |
class |
JIPipeSerializedParameterCollectionData
A base class for
JIPipeData that is serialized from/to JSON for convenience
Only valid JIPipeParameter definitions are stored. |
| Modifier and Type | Method and Description |
|---|---|
<T extends JIPipeData> |
JIPipeDataTable.getAllData(Class<T> dataClass,
JIPipeProgressInfo progressInfo)
Gets all the data stored in a specific row.
|
<T extends JIPipeData> |
JIPipeVirtualData.getData(Class<T> klass,
JIPipeProgressInfo progressInfo)
Gets the currently stored data.
|
<T extends JIPipeData> |
JIPipeDataTable.getData(int row,
Class<T> dataClass,
JIPipeProgressInfo progressInfo)
Gets the data stored in a specific row.
|
static <T extends JIPipeData> |
JIPipeSerializedJsonObjectData.importData(JIPipeReadDataStorage storage,
Class<T> klass) |
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
JIPipeDataConverter.convert(JIPipeData input)
Converts the supported input type to the output type
|
JIPipeData |
JIPipeDataTable.duplicate(JIPipeProgressInfo progressInfo) |
JIPipeData |
JIPipeEmptyData.duplicate(JIPipeProgressInfo progressInfo) |
JIPipeData |
JIPipeSerializedJsonObjectData.duplicate(JIPipeProgressInfo progressInfo) |
JIPipeData |
JIPipeSerializedParameterCollectionData.duplicate(JIPipeProgressInfo progressInfo) |
JIPipeData |
JIPipeData.duplicate(JIPipeProgressInfo progressInfo)
Duplicates the data
|
JIPipeData |
JIPipeVirtualData.getData(JIPipeProgressInfo progressInfo)
Gets the currently stored data
|
static JIPipeData |
JIPipeSerializedParameterCollectionData.importData(JIPipeReadDataStorage storage,
JIPipeProgressInfo progressInfo) |
JIPipeData |
JIPipeDataInfo.newInstance(Object... args)
Creates a new instance
|
JIPipeData |
JIPipeDataImportOperation.show(JIPipeDataSlot slot,
JIPipeDataTableMetadataRow row,
String dataAnnotationName,
Path rowStorageFolder,
String compartmentName,
String algorithmName,
String displayName,
JIPipeWorkbench workbench,
JIPipeProgressInfo progressInfo)
Imports the data and shows it
|
JIPipeData |
JIPipeDataDisplayWrapperImportOperation.show(JIPipeDataSlot slot,
JIPipeDataTableMetadataRow row,
String dataAnnotationName,
Path rowStorageFolder,
String compartmentName,
String algorithmName,
String displayName,
JIPipeWorkbench workbench,
JIPipeProgressInfo progressInfo) |
| Modifier and Type | Method and Description |
|---|---|
static Class<? extends JIPipeData> |
JIPipeDataSlotInfo.applyInheritanceConversion(JIPipeDataSlotInfo definition,
Class<? extends JIPipeData> dataClass)
Applies inheritance conversion.
|
static Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> |
JIPipeDataSlotInfo.composeRawInheritanceConversions(Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> outer,
Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> inner)
Creates the composition of two inheritance conversions.
|
static Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> |
JIPipeDataSlotInfo.composeRawInheritanceConversions(Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> outer,
Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> inner)
Creates the composition of two inheritance conversions.
|
Class<? extends JIPipeData> |
JIPipeDataTable.getAcceptedDataType() |
Set<Class<? extends JIPipeData>> |
JIPipeDefaultMutableSlotConfiguration.getAllowedInputSlotTypes() |
Set<Class<? extends JIPipeData>> |
JIPipeMutableSlotConfiguration.getAllowedInputSlotTypes() |
Set<Class<? extends JIPipeData>> |
JIPipeDefaultMutableSlotConfiguration.getAllowedOutputSlotTypes() |
Set<Class<? extends JIPipeData>> |
JIPipeMutableSlotConfiguration.getAllowedOutputSlotTypes() |
Class<? extends JIPipeData> |
JIPipeDataSlotInfo.getDataClass() |
Class<? extends JIPipeData> |
JIPipeVirtualData.getDataClass() |
Class<? extends JIPipeData> |
JIPipeDataInfo.getDataClass() |
Class<? extends JIPipeData> |
JIPipeDataTable.getDataClass(int row)
Gets the true type of the data at given row
|
Class<? extends JIPipeData> |
JIPipeDataConverter.getInputType() |
Class<? extends JIPipeData> |
JIPipeDataConverter.getOutputType() |
static List<Class<? extends JIPipeData>> |
JIPipeData.getSortedList(Collection<Class<? extends JIPipeData>> classes)
Gets name sorted list of data classes
|
static Set<Class<? extends JIPipeData>> |
JIPipeDefaultMutableSlotConfiguration.getUnhiddenRegisteredDataTypes()
Returns a collection of all unhidden slot data types
|
static Map<String,Set<Class<? extends JIPipeData>>> |
JIPipeData.groupByMenuPath(Collection<Class<? extends JIPipeData>> classes)
Groups the data types by their menu path
|
| Modifier and Type | Method and Description |
|---|---|
boolean |
JIPipeDataTable.accepts(JIPipeData data)
Returns true if the slot can carry the provided data.
|
boolean |
JIPipeDataTable.acceptsTrivially(JIPipeData data)
Returns true if the slot can carry the provided data.
|
void |
JIPipeDataTable.addData(JIPipeData value,
JIPipeProgressInfo progressInfo)
Adds a data row
|
void |
JIPipeDataTable.addData(JIPipeData value,
List<JIPipeTextAnnotation> annotations,
JIPipeTextAnnotationMergeMode mergeStrategy,
JIPipeProgressInfo progressInfo)
Adds a data row
|
void |
JIPipeDataTable.addData(JIPipeData data,
List<JIPipeTextAnnotation> annotations,
JIPipeTextAnnotationMergeMode mergeStrategy,
List<JIPipeDataAnnotation> dataAnnotations,
JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy)
Adds data as virtual data reference
|
JIPipeData |
JIPipeDataConverter.convert(JIPipeData input)
Converts the supported input type to the output type
|
static JIPipeInputDataSlot |
JIPipeDataSlot.createSingletonSlot(JIPipeData data,
JIPipeGraphNode node)
Creates a new input slot that contains only one data item
|
void |
JIPipeDataDisplayOperation.display(JIPipeData data,
String displayName,
JIPipeWorkbench workbench,
JIPipeDataSource source)
Shows the data in the UI
|
void |
JIPipeDataTable.setData(int row,
JIPipeData data)
Sets the data of a specific row
|
void |
JIPipeDataTable.setDataAnnotation(int row,
String column,
JIPipeData data)
Sets a data annotation
|
static JIPipeDataTableDataSource |
JIPipeDataTableDataSource.wrap(JIPipeData data,
JIPipeDataSource dataSource)
Ensures that a table data source is present.
|
| Modifier and Type | Method and Description |
|---|---|
boolean |
JIPipeDataTable.accepts(Class<? extends JIPipeData> klass)
Returns true if the slot can carry the provided data.
|
boolean |
JIPipeDataTable.acceptsTrivially(Class<? extends JIPipeData> klass)
Returns true if the slot can carry the provided data.
|
JIPipeDataSlotInfo.Deserializer.Builder |
JIPipeDataSlotInfo.Deserializer.Builder.addInheritanceConversion(Class<? extends JIPipeData> from,
Class<? extends JIPipeData> to) |
JIPipeDataSlotInfo.Deserializer.Builder |
JIPipeDataSlotInfo.Deserializer.Builder.addInheritanceConversion(Class<? extends JIPipeData> from,
Class<? extends JIPipeData> to) |
JIPipeDefaultMutableSlotConfiguration.Builder |
JIPipeDefaultMutableSlotConfiguration.Builder.addInputSlot(String name,
String description,
Class<? extends JIPipeData> klass)
Adds an input slot
|
JIPipeDataSlotInfo |
JIPipeDefaultMutableSlotConfiguration.addInputSlot(String name,
String description,
Class<? extends JIPipeData> dataClass,
boolean user)
Adds a new input slot
|
JIPipeDefaultMutableSlotConfiguration.Builder |
JIPipeDefaultMutableSlotConfiguration.Builder.addInputSlot(String name,
String description,
Class<? extends JIPipeData> klass,
boolean optional)
Adds an input slot
|
JIPipeDefaultMutableSlotConfiguration.Builder |
JIPipeDefaultMutableSlotConfiguration.Builder.addInputSlot(String name,
String description,
Class<? extends JIPipeData> klass,
boolean optional,
boolean userModifiable)
Adds an input slot
|
JIPipeDefaultMutableSlotConfiguration.Builder |
JIPipeDefaultMutableSlotConfiguration.Builder.addOutputSlot(String name,
String description,
Class<? extends JIPipeData> klass,
String inheritedSlot)
Adds an output slot
|
JIPipeDataSlotInfo |
JIPipeDefaultMutableSlotConfiguration.addOutputSlot(String name,
String description,
Class<? extends JIPipeData> dataClass,
String inherited,
boolean user)
Adds a new input slot
|
JIPipeDefaultMutableSlotConfiguration.Builder |
JIPipeDefaultMutableSlotConfiguration.Builder.addOutputSlot(String name,
String description,
Class<? extends JIPipeData> klass,
String inheritedSlot,
Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> inheritanceConversions)
Adds an output slot
|
JIPipeDefaultMutableSlotConfiguration.Builder |
JIPipeDefaultMutableSlotConfiguration.Builder.addOutputSlot(String name,
String description,
Class<? extends JIPipeData> klass,
String inheritedSlot,
Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> inheritanceConversions)
Adds an output slot
|
JIPipeDefaultMutableSlotConfiguration.Builder |
JIPipeDefaultMutableSlotConfiguration.Builder.addOutputSlot(String name,
String description,
Class<? extends JIPipeData> klass,
String inheritedSlot,
Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> inheritanceConversions)
Adds an output slot
|
JIPipeDefaultMutableSlotConfiguration.Builder |
JIPipeDefaultMutableSlotConfiguration.Builder.addOutputSlot(String name,
String description,
Class<? extends JIPipeData> klass,
String inheritedSlot,
Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> inheritanceConversions,
boolean userModifiable)
Adds an output slot
|
JIPipeDefaultMutableSlotConfiguration.Builder |
JIPipeDefaultMutableSlotConfiguration.Builder.addOutputSlot(String name,
String description,
Class<? extends JIPipeData> klass,
String inheritedSlot,
Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> inheritanceConversions,
boolean userModifiable)
Adds an output slot
|
JIPipeDefaultMutableSlotConfiguration.Builder |
JIPipeDefaultMutableSlotConfiguration.Builder.addOutputSlot(String name,
String description,
Class<? extends JIPipeData> klass,
String inheritedSlot,
Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> inheritanceConversions,
boolean userModifiable)
Adds an output slot
|
static Class<? extends JIPipeData> |
JIPipeDataSlotInfo.applyInheritanceConversion(JIPipeDataSlotInfo definition,
Class<? extends JIPipeData> dataClass)
Applies inheritance conversion.
|
boolean |
JIPipeDefaultMutableSlotConfiguration.canCreateCompatibleInputSlot(Class<? extends JIPipeData> acceptedDataType)
Returns if an input slot with specified type can be created
|
boolean |
JIPipeMutableSlotConfiguration.canCreateCompatibleInputSlot(Class<? extends JIPipeData> acceptedDataType) |
boolean |
JIPipeDefaultMutableSlotConfiguration.canCreateCompatibleOutputSlot(Class<? extends JIPipeData> acceptedDataType)
Returns if an output slot with specified type can be created
|
boolean |
JIPipeMutableSlotConfiguration.canCreateCompatibleOutputSlot(Class<? extends JIPipeData> acceptedDataType) |
static Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> |
JIPipeDataSlotInfo.composeRawInheritanceConversions(Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> outer,
Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> inner)
Creates the composition of two inheritance conversions.
|
static Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> |
JIPipeDataSlotInfo.composeRawInheritanceConversions(Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> outer,
Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> inner)
Creates the composition of two inheritance conversions.
|
static Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> |
JIPipeDataSlotInfo.composeRawInheritanceConversions(Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> outer,
Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> inner)
Creates the composition of two inheritance conversions.
|
static Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> |
JIPipeDataSlotInfo.composeRawInheritanceConversions(Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> outer,
Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> inner)
Creates the composition of two inheritance conversions.
|
void |
JIPipeDataTable.convert(Class<? extends JIPipeData> dataClass,
JIPipeProgressInfo progressInfo)
Converts this data table in-place and sets the accepted data type
|
static String |
JIPipeData.getDescriptionOf(Class<? extends JIPipeData> klass)
Returns the description of a data type
|
static JIPipeDataInfo |
JIPipeDataInfo.getInstance(Class<? extends JIPipeData> klass)
Returns a
JIPipeDataInfo instance for the data class. |
static String |
JIPipeData.getMenuPathOf(Class<? extends JIPipeData> klass)
Returns the menu path of the data type
|
static String |
JIPipeData.getNameOf(Class<? extends JIPipeData> klass)
Returns the name of a data type
|
static List<Class<? extends JIPipeData>> |
JIPipeData.getSortedList(Collection<Class<? extends JIPipeData>> classes)
Gets name sorted list of data classes
|
static HTMLText |
JIPipeData.getStorageDocumentation(Class<? extends JIPipeData> klass)
Returns the storage documentation for the data type or null if none was provided.
|
static String |
JIPipeData.getStorageSchema(Class<? extends JIPipeData> klass)
Returns the URL pointing to a JSON schema that describes the storage of the data type.
|
static Map<String,Set<Class<? extends JIPipeData>>> |
JIPipeData.groupByMenuPath(Collection<Class<? extends JIPipeData>> classes)
Groups the data types by their menu path
|
static boolean |
JIPipeData.isCommon(Class<? extends JIPipeData> klass)
Returns true if this data is commonly used (only for UI)
|
static boolean |
JIPipeData.isHeavy(Class<? extends JIPipeData> klass)
Returns true if this data is considered as having a large size
|
static boolean |
JIPipeData.isHidden(Class<? extends JIPipeData> klass)
Returns true if this data should be be accessible by the user
|
JIPipeDefaultMutableSlotConfiguration.Builder |
JIPipeDefaultMutableSlotConfiguration.Builder.restrictInputTo(Collection<Class<? extends JIPipeData>> types)
Restricts the slot to specified data types
|
JIPipeDefaultMutableSlotConfiguration.Builder |
JIPipeDefaultMutableSlotConfiguration.Builder.restrictOutputTo(Collection<Class<? extends JIPipeData>> types)
Restricts the slot to specified data types
|
void |
JIPipeDataTable.setAcceptedDataType(Class<? extends JIPipeData> slotDataType)
Sets the accepted slot type
Please note that this method can cause issues when running the graph
|
void |
JIPipeDefaultMutableSlotConfiguration.setAllowedInputSlotTypes(Set<Class<? extends JIPipeData>> allowedInputSlotTypes) |
void |
JIPipeDefaultMutableSlotConfiguration.setAllowedOutputSlotTypes(Set<Class<? extends JIPipeData>> allowedOutputSlotTypes) |
void |
JIPipeDataSlotInfo.setInheritanceConversionsFromRaw(Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> inheritanceConversions) |
void |
JIPipeDataSlotInfo.setInheritanceConversionsFromRaw(Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> inheritanceConversions) |
| Constructor and Description |
|---|
JIPipeVirtualData(JIPipeData data)
Create virtual data from data
|
| Constructor and Description |
|---|
ImportDataRun(Path rowStorageFolder,
Class<? extends JIPipeData> dataType,
JIPipeDataTableMetadataRow metadataRow) |
JIPipeDataSlotInfo(Class<? extends JIPipeData> dataClass,
JIPipeSlotType slotType) |
JIPipeDataSlotInfo(Class<? extends JIPipeData> dataClass,
JIPipeSlotType slotType,
String name,
String description) |
JIPipeDataSlotInfo(Class<? extends JIPipeData> dataClass,
JIPipeSlotType slotType,
String name,
String description,
String inheritedSlot) |
JIPipeDataSlotInfo(Class<? extends JIPipeData> dataClass,
JIPipeSlotType slotType,
String name,
String description,
String inheritedSlot,
boolean optional) |
JIPipeDataTable(Class<? extends JIPipeData> acceptedDataType) |
JIPipeVirtualData(Class<? extends JIPipeData> dataClass,
Path virtualStoragePath,
String stringRepresentation)
Creates a custom virtual data.
|
| Modifier and Type | Method and Description |
|---|---|
<T extends JIPipeData> |
JIPipeDataBatch.getInputData(JIPipeDataSlot slot,
Class<T> dataClass,
JIPipeProgressInfo progressInfo)
Gets stored data from an input slot
|
<T extends JIPipeData> |
JIPipeMergingDataBatch.getInputData(JIPipeDataSlot slot,
Class<T> dataClass,
JIPipeProgressInfo progressInfo)
Gets stored data from an input slot
|
<T extends JIPipeData> |
JIPipeDataBatch.getInputData(String slotName,
Class<T> dataClass,
JIPipeProgressInfo progressInfo)
Gets stored data from an input slot
|
<T extends JIPipeData> |
JIPipeMergingDataBatch.getInputData(String slotName,
Class<T> dataClass,
JIPipeProgressInfo progressInfo)
Gets stored data from an input slot
|
| Modifier and Type | Method and Description |
|---|---|
Class<? extends JIPipeData> |
DefaultJIPipeInputSlot.value() |
Class<? extends JIPipeData> |
DefaultJIPipeOutputSlot.value() |
| Modifier and Type | Method and Description |
|---|---|
void |
JIPipeDataBatch.addOutputData(JIPipeDataSlot slot,
JIPipeData data,
JIPipeProgressInfo progressInfo)
Writes output data into the provided slot
Please note that annotations that are added to all annotations should be set up till this point
|
void |
JIPipeMergingDataBatch.addOutputData(JIPipeDataSlot slot,
JIPipeData data,
JIPipeProgressInfo progressInfo)
Writes output data into the provided slot
Please note that annotations that are added to all annotations should be set up till this point
|
void |
JIPipeDataBatch.addOutputData(JIPipeDataSlot slot,
JIPipeData data,
List<JIPipeTextAnnotation> additionalAnnotations,
JIPipeTextAnnotationMergeMode mergeStrategy,
JIPipeProgressInfo progressInfo)
Writes output data into the provided slot
Please note that annotations that are added to all annotations should be set up till this point
|
void |
JIPipeMergingDataBatch.addOutputData(JIPipeDataSlot slot,
JIPipeData data,
List<JIPipeTextAnnotation> additionalAnnotations,
JIPipeTextAnnotationMergeMode mergeStrategy,
JIPipeProgressInfo progressInfo)
Writes output data into the provided slot
Please note that annotations that are added to all annotations should be set up till this point
|
void |
JIPipeDataBatch.addOutputData(JIPipeDataSlot slot,
JIPipeData data,
List<JIPipeTextAnnotation> additionalAnnotations,
JIPipeTextAnnotationMergeMode mergeStrategy,
List<JIPipeDataAnnotation> additionalDataAnnotations,
JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy,
JIPipeProgressInfo progressInfo)
Writes output data into the provided slot
Please note that annotations that are added to all annotations should be set up till this point
|
void |
JIPipeMergingDataBatch.addOutputData(JIPipeDataSlot slot,
JIPipeData data,
List<JIPipeTextAnnotation> additionalAnnotations,
JIPipeTextAnnotationMergeMode mergeStrategy,
List<JIPipeDataAnnotation> additionalDataAnnotations,
JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy,
JIPipeProgressInfo progressInfo)
Writes output data into the provided slot
Please note that annotations that are added to all annotations should be set up till this point
|
void |
JIPipeDataBatch.addOutputData(String slotName,
JIPipeData data,
JIPipeProgressInfo progressInfo)
Writes output data into the provided slot
Please note that annotations should be set up till this point
|
void |
JIPipeMergingDataBatch.addOutputData(String slotName,
JIPipeData data,
JIPipeProgressInfo progressInfo)
Writes output data into the provided slot
Please note that annotations should be set up till this point
|
void |
JIPipeMergingDataBatch.addOutputData(String slotName,
JIPipeData data,
List<JIPipeTextAnnotation> additionalAnnotations,
JIPipeProgressInfo progressInfo)
Writes output data into the provided slot
Please note that annotations should be set up till this point
|
void |
JIPipeDataBatch.addOutputData(String slotName,
JIPipeData data,
List<JIPipeTextAnnotation> additionalAnnotations,
JIPipeTextAnnotationMergeMode mergeStrategy,
JIPipeProgressInfo progressInfo)
Writes output data into the provided slot
Please note that annotations should be set up till this point
|
void |
JIPipeMergingDataBatch.addOutputData(String slotName,
JIPipeData data,
List<JIPipeTextAnnotation> additionalAnnotations,
JIPipeTextAnnotationMergeMode annotationMergeStrategy,
JIPipeProgressInfo progressInfo)
Writes output data into the provided slot
Please note that annotations should be set up till this point
|
void |
JIPipeDataBatch.addOutputData(String slotName,
JIPipeData data,
List<JIPipeTextAnnotation> additionalAnnotations,
JIPipeTextAnnotationMergeMode mergeStrategy,
List<JIPipeDataAnnotation> additionalDataAnnotations,
JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy,
JIPipeProgressInfo progressInfo)
Writes output data into the provided slot
Please note that annotations should be set up till this point
|
void |
JIPipeMergingDataBatch.addOutputData(String slotName,
JIPipeData data,
List<JIPipeTextAnnotation> additionalAnnotations,
JIPipeTextAnnotationMergeMode mergeStrategy,
List<JIPipeDataAnnotation> additionalDataAnnotations,
JIPipeDataAnnotationMergeMode dataAnnotationMergeStrategy,
JIPipeProgressInfo progressInfo)
Writes output data into the provided slot
Please note that annotations should be set up till this point
|
| Constructor and Description |
|---|
DefaultJIPipeInputSlot(Class<? extends JIPipeData> value,
String slotName,
String description,
boolean autoCreate,
boolean optional,
JIPipeDataSlotRole role) |
DefaultJIPipeOutputSlot(Class<? extends JIPipeData> value,
String slotName,
String description,
String inheritedSlot,
boolean autoCreate,
JIPipeDataSlotRole role) |
| Modifier and Type | Method and Description |
|---|---|
<T extends JIPipeData> |
JIPipeDatatypeRegistry.convert(JIPipeData inputData,
Class<T> outputDataType)
Converts the input data to the output data type
|
<T extends JIPipeData> |
JIPipeNodeRegistry.getDataSourcesFor(Class<? extends T> dataClass)
Returns data source algorithms that can generate the specified data type
|
| Modifier and Type | Method and Description |
|---|---|
List<Class<? extends JIPipeData>> |
JIPipeDatatypeRegistry.findDataTypes(Predicate<Class<?>> predicate)
Returns all
JIPipeData classes that satisfy the provided predicate |
List<Class<? extends JIPipeData>> |
JIPipeDatatypeRegistry.findDataTypesByInterfaces(Class<?>... interfaces)
Returns all
JIPipeData classes that satisfy the provided interfaces |
Class<? extends JIPipeData> |
JIPipeDatatypeRegistry.getById(String id)
Returns the data class with specified ID
|
Map<String,Set<Class<? extends JIPipeData>>> |
JIPipeDatatypeRegistry.getDataTypesByMenuPaths()
Gets the registered data types, grouped by their menu paths
|
Set<Class<? extends JIPipeData>> |
JIPipeDefaultNodeRegistrationTask.getDependencyDatatypeClasses() |
Map<String,Class<? extends JIPipeData>> |
JIPipeDatatypeRegistry.getRegisteredDataTypes()
Gets all registered data types
|
Map<String,Class<? extends JIPipeData>> |
JIPipeDatatypeRegistry.getUnhiddenRegisteredDataTypes()
Gets all data types that are not hidden
|
| Modifier and Type | Method and Description |
|---|---|
<T extends JIPipeData> |
JIPipeDatatypeRegistry.convert(JIPipeData inputData,
Class<T> outputDataType)
Converts the input data to the output data type
|
| Modifier and Type | Method and Description |
|---|---|
Set<ImageJDataExporter> |
JIPipeImageJAdapterRegistry.getAvailableExporters(Class<? extends JIPipeData> dataClass,
boolean includeConvertible)
Returns all exporter instances that
|
Set<ImageJDataImporter> |
JIPipeImageJAdapterRegistry.getAvailableImporters(Class<? extends JIPipeData> dataClass,
boolean includeConvertible)
Returns all importer instances that
|
int |
JIPipeDatatypeRegistry.getConversionDistance(Class<? extends JIPipeData> inputDataType,
Class<? extends JIPipeData> outputDataType)
Returns the number of conversion steps.
|
int |
JIPipeDatatypeRegistry.getConversionDistance(Class<? extends JIPipeData> inputDataType,
Class<? extends JIPipeData> outputDataType)
Returns the number of conversion steps.
|
ImageJDataExporter |
JIPipeImageJAdapterRegistry.getDefaultExporterFor(Class<? extends JIPipeData> dataClass)
Gets the default exporter for a data class
|
ImageJDataImporter |
JIPipeImageJAdapterRegistry.getDefaultImporterFor(Class<? extends JIPipeData> dataClass)
Gets the default importer for a data class
|
ImageIcon |
JIPipeDatatypeRegistry.getIconFor(Class<? extends JIPipeData> klass)
Returns the icon for a datatype
|
URL |
JIPipeDatatypeRegistry.getIconURLFor(Class<? extends JIPipeData> klass) |
String |
JIPipeDatatypeRegistry.getIdOf(Class<? extends JIPipeData> dataClass)
Gets the ID of the data type
|
JIPipeDependency |
JIPipeDatatypeRegistry.getSourceOf(Class<? extends JIPipeData> dataClass)
Returns the source that registered that data type
|
boolean |
JIPipeDatatypeRegistry.hasDataType(Class<? extends JIPipeData> dataClass)
Returns true if the specified data type class is registered
|
boolean |
JIPipeDatatypeRegistry.isConvertible(Class<? extends JIPipeData> inputDataType,
Class<? extends JIPipeData> outputDataType)
Returns true if the input data type can be converted into the output data type.
|
boolean |
JIPipeDatatypeRegistry.isConvertible(Class<? extends JIPipeData> inputDataType,
Class<? extends JIPipeData> outputDataType)
Returns true if the input data type can be converted into the output data type.
|
boolean |
JIPipeDatatypeRegistry.isRegistered(Class<? extends JIPipeData> klass) |
static boolean |
JIPipeDatatypeRegistry.isTriviallyConvertible(Class<? extends JIPipeData> inputDataType,
Class<? extends JIPipeData> outputDataType)
Returns true if the input data type can be trivially converted into the output data type.
|
static boolean |
JIPipeDatatypeRegistry.isTriviallyConvertible(Class<? extends JIPipeData> inputDataType,
Class<? extends JIPipeData> outputDataType)
Returns true if the input data type can be trivially converted into the output data type.
|
void |
JIPipeDatatypeRegistry.register(String id,
Class<? extends JIPipeData> klass,
JIPipeDependency source)
Registers a data type
|
void |
JIPipeDatatypeRegistry.registerIcon(Class<? extends JIPipeData> klass,
URL resourcePath)
Registers a custom icon for a datatype
|
void |
JIPipeDatatypeRegistry.registerResultSlotUI(Class<? extends JIPipeData> klass,
Class<? extends JIPipeResultDataSlotRowUI> uiClass)
Registers a custom UI for a result data slot
|
void |
JIPipeDatatypeRegistry.registerResultTableCellUI(Class<? extends JIPipeData> klass,
Class<? extends JIPipeResultDataSlotPreview> renderer)
Registers a custom renderer for the data displayed in the dataslot result table
|
void |
JIPipeImageJAdapterRegistry.setDefaultExporterFor(Class<? extends JIPipeData> dataClass,
String id)
Sets the default exporter for a data type
|
void |
JIPipeImageJAdapterRegistry.setDefaultImporterFor(Class<? extends JIPipeData> dataClass,
String id)
Sets the default importer for a data type
|
void |
JIPipeDefaultNodeRegistrationTask.setDependencyDatatypeClasses(Set<Class<? extends JIPipeData>> dependencyDatatypeClasses)
Sets dependency data classes.
|
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
ImplicitResultsTableDataConverter.convert(JIPipeData input) |
| Modifier and Type | Method and Description |
|---|---|
Class<? extends JIPipeData> |
ImplicitResultsTableDataConverter.getInputType() |
Class<? extends JIPipeData> |
ImplicitResultsTableDataConverter.getOutputType() |
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
ImplicitResultsTableDataConverter.convert(JIPipeData input) |
| Modifier and Type | Class and Description |
|---|---|
class |
DataBatchStatusData |
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
DataBatchStatusData.duplicate(JIPipeProgressInfo progressInfo) |
| Modifier and Type | Method and Description |
|---|---|
Class<? extends JIPipeData> |
CellposeSizeModelImageJExporter.getExportedJIPipeDataType() |
Class<? extends JIPipeData> |
CellposeModelImageJExporter.getExportedJIPipeDataType() |
Class<? extends JIPipeData> |
CellposeSizeModelImageJImporter.getImportedJIPipeDataType() |
Class<? extends JIPipeData> |
CellposeModelImageJImporter.getImportedJIPipeDataType() |
| Modifier and Type | Class and Description |
|---|---|
class |
CellposeModelData
Wrapper around Cellpose models
|
class |
CellposeSizeModelData
Wrapper around Cellpose models
|
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
CellposeModelData.duplicate(JIPipeProgressInfo progressInfo) |
JIPipeData |
CellposeSizeModelData.duplicate(JIPipeProgressInfo progressInfo) |
| Modifier and Type | Method and Description |
|---|---|
Class<? extends JIPipeData> |
CLIIJ2DataToImageWindowImageJExporter.getExportedJIPipeDataType() |
Class<? extends JIPipeData> |
CLIJ2DataFromImageWindowImageJImporter.getImportedJIPipeDataType() |
| Modifier and Type | Class and Description |
|---|---|
class |
CLIJImageData
Contains a CLIJ image
|
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
ImagePlusDataToCLIJImageDataConverter.convert(JIPipeData input) |
JIPipeData |
CLIJImageToImagePlusDataConverter.convert(JIPipeData input) |
JIPipeData |
CLIJImageData.duplicate(JIPipeProgressInfo progressInfo) |
| Modifier and Type | Method and Description |
|---|---|
Class<? extends JIPipeData> |
ImagePlusDataToCLIJImageDataConverter.getInputType() |
Class<? extends JIPipeData> |
CLIJImageToImagePlusDataConverter.getInputType() |
Class<? extends JIPipeData> |
ImagePlusDataToCLIJImageDataConverter.getOutputType() |
Class<? extends JIPipeData> |
CLIJImageToImagePlusDataConverter.getOutputType() |
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
ImagePlusDataToCLIJImageDataConverter.convert(JIPipeData input) |
JIPipeData |
CLIJImageToImagePlusDataConverter.convert(JIPipeData input) |
| Constructor and Description |
|---|
CLIJImageToImagePlusDataConverter(Class<? extends JIPipeData> outputType) |
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
OpenContainingFolderDataImportOperation.show(JIPipeDataSlot slot,
JIPipeDataTableMetadataRow row,
String dataAnnotationName,
Path rowStorageFolder,
String compartmentName,
String algorithmName,
String displayName,
JIPipeWorkbench workbench,
JIPipeProgressInfo progressInfo) |
JIPipeData |
CopyContainingFolderDataImportOperation.show(JIPipeDataSlot slot,
JIPipeDataTableMetadataRow row,
String dataAnnotationName,
Path rowStorageFolder,
String compartmentName,
String algorithmName,
String displayName,
JIPipeWorkbench workbench,
JIPipeProgressInfo progressInfo) |
JIPipeData |
OpenInNativeApplicationDataImportOperation.show(JIPipeDataSlot slot,
JIPipeDataTableMetadataRow row,
String dataAnnotationName,
Path rowStorageFolder,
String compartmentName,
String algorithmName,
String displayName,
JIPipeWorkbench workbench,
JIPipeProgressInfo progressInfo) |
| Modifier and Type | Method and Description |
|---|---|
void |
OpenTextInJIPipeDataOperation.display(JIPipeData data,
String displayName,
JIPipeWorkbench workbench,
JIPipeDataSource source) |
void |
DefaultDataDisplayOperation.display(JIPipeData data,
String displayName,
JIPipeWorkbench workbench,
JIPipeDataSource source) |
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
ImplicitPathTypeConverter.convert(JIPipeData input) |
| Modifier and Type | Method and Description |
|---|---|
Class<? extends JIPipeData> |
ImplicitPathTypeConverter.getInputType() |
Class<? extends JIPipeData> |
ImplicitPathTypeConverter.getOutputType() |
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
ImplicitPathTypeConverter.convert(JIPipeData input) |
| Constructor and Description |
|---|
ImplicitPathTypeConverter(Class<? extends JIPipeData> inputType,
Class<? extends JIPipeData> outputType) |
ImplicitPathTypeConverter(Class<? extends JIPipeData> inputType,
Class<? extends JIPipeData> outputType) |
| Modifier and Type | Method and Description |
|---|---|
Class<? extends JIPipeData> |
PathDataToTableImageJExporter.getExportedJIPipeDataType() |
Class<? extends JIPipeData> |
PathDataFromTableImageJImporter.getImportedJIPipeDataType() |
| Modifier and Type | Class and Description |
|---|---|
class |
FileData
Data containing a file
|
class |
FolderData
Data that stores a folder
|
class |
PathData
Encapsulates a
Path |
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
PathData.duplicate(JIPipeProgressInfo progressInfo) |
| Modifier and Type | Method and Description |
|---|---|
void |
OpenPathDataOperation.display(JIPipeData data,
String displayName,
JIPipeWorkbench workbench,
JIPipeDataSource source) |
void |
CopyPathDataOperation.display(JIPipeData data,
String displayName,
JIPipeWorkbench workbench,
JIPipeDataSource source) |
| Modifier and Type | Class and Description |
|---|---|
class |
BooleanFormData |
class |
DoubleFormData |
class |
EnumFormData |
class |
FormData
Base class for any form data.
|
class |
GroupHeaderFormData |
class |
IntegerFormData |
class |
ParameterFormData
|
class |
PathFormData |
class |
StringFormData |
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
IntegerFormData.duplicate(JIPipeProgressInfo progressInfo) |
JIPipeData |
DoubleFormData.duplicate(JIPipeProgressInfo progressInfo) |
JIPipeData |
EnumFormData.duplicate(JIPipeProgressInfo progressInfo) |
JIPipeData |
BooleanFormData.duplicate(JIPipeProgressInfo progressInfo) |
JIPipeData |
GroupHeaderFormData.duplicate(JIPipeProgressInfo progressInfo) |
JIPipeData |
StringFormData.duplicate(JIPipeProgressInfo progressInfo) |
JIPipeData |
PathFormData.duplicate(JIPipeProgressInfo progressInfo) |
| Modifier and Type | Class and Description |
|---|---|
class |
ModelData |
class |
SpotDetectorData |
class |
SpotsCollectionData |
class |
SpotTrackerData |
class |
TrackCollectionData |
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
ModelData.duplicate(JIPipeProgressInfo progressInfo) |
JIPipeData |
SpotTrackerData.duplicate(JIPipeProgressInfo progressInfo) |
JIPipeData |
SpotDetectorData.duplicate(JIPipeProgressInfo progressInfo) |
| Modifier and Type | Method and Description |
|---|---|
void |
TrackSchemeDataDisplayOperation.display(JIPipeData data,
String displayName,
JIPipeWorkbench workbench,
JIPipeDataSource source) |
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
SpotsToRoiConverter.convert(JIPipeData input) |
| Modifier and Type | Method and Description |
|---|---|
Class<? extends JIPipeData> |
SpotsToRoiConverter.getInputType() |
Class<? extends JIPipeData> |
SpotsToRoiConverter.getOutputType() |
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
SpotsToRoiConverter.convert(JIPipeData input) |
| Modifier and Type | Class and Description |
|---|---|
class |
WekaModelData
Wrapper around Cellpose models
|
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
WekaModelData.duplicate(JIPipeProgressInfo progressInfo) |
| Modifier and Type | Method and Description |
|---|---|
void |
ImageJ2OpNodeInfo.addInputSlotForModuleItem(ModuleItem<?> item,
Class<? extends JIPipeData> dataClass) |
void |
ImageJ2OpNodeInfo.addOutputSlotForModuleItem(ModuleItem<?> item,
Class<? extends JIPipeData> dataClass) |
| Modifier and Type | Method and Description |
|---|---|
Class<? extends JIPipeData> |
IJ2DataToImageWindowImageJExporter.getExportedJIPipeDataType() |
Class<? extends JIPipeData> |
IJ2DataFromImageWindowImageJImporter.getImportedJIPipeDataType() |
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
ImageJ1ToImageJ2Converter.convert(JIPipeData input) |
JIPipeData |
ImageJ2ToImageJ1Converter.convert(JIPipeData input) |
| Modifier and Type | Method and Description |
|---|---|
Class<? extends JIPipeData> |
ImageJ1ToImageJ2Converter.getInputType() |
Class<? extends JIPipeData> |
ImageJ2ToImageJ1Converter.getInputType() |
Class<? extends JIPipeData> |
ImageJ1ToImageJ2Converter.getOutputType() |
Class<? extends JIPipeData> |
ImageJ2ToImageJ1Converter.getOutputType() |
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
ImageJ1ToImageJ2Converter.convert(JIPipeData input) |
JIPipeData |
ImageJ2ToImageJ1Converter.convert(JIPipeData input) |
| Modifier and Type | Class and Description |
|---|---|
class |
ImageJ2DatasetData |
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
ImageJ2DatasetData.duplicate(JIPipeProgressInfo progressInfo) |
| Modifier and Type | Class and Description |
|---|---|
class |
BorderImageJ2OutOfBoundsFactoryData |
class |
EmptyImageJ2OutOfBoundsFactory |
class |
ImageJ2OutOfBoundsFactoryData |
class |
MirrorImageJ2OutOfBoundsFactoryData |
class |
PeriodicImageJ2OutOfBoundsFactoryData |
| Modifier and Type | Class and Description |
|---|---|
class |
ByteConstantValueImageJ2OutOfBoundsFactoryData |
class |
DoubleConstantValueImageJ2OutOfBoundsFactoryData |
class |
FloatConstantValueImageJ2OutOfBoundsFactoryData |
class |
IntegerConstantValueImageJ2OutOfBoundsFactoryData |
class |
LongConstantValueImageJ2OutOfBoundsFactoryData |
class |
ShortConstantValueImageJ2OutOfBoundsFactoryData |
| Modifier and Type | Class and Description |
|---|---|
class |
CenteredRectangleImageJ2ShapeData |
class |
DiamondImageJ2ShapeData |
class |
DiamondTipsImageJ2ShapeData |
class |
EmptyImageJ2ShapeData |
class |
HorizontalLineImageJ2ShapeData |
class |
HyperSphereImageJ2ShapeData |
class |
ImageJ2ShapeData |
class |
PairOfPointsImageJ2ShapeData |
class |
PeriodicLineImageJ2ShapeData |
class |
RectangleImageJ2ShapeData |
| Modifier and Type | Class and Description |
|---|---|
class |
DataSlotModuleInput<ModuleDataType,JIPipeDataType extends JIPipeData> |
| Modifier and Type | Class and Description |
|---|---|
class |
DataSlotModuleOutput<ModuleDataType,JIPipeDataType extends JIPipeData> |
| Modifier and Type | Field and Description |
|---|---|
static Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> |
ImageJAlgorithmsExtension.ADD_MASK_QUALIFIER
Conversion rules that convert any input data type into their respective mask data type
|
static Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> |
ImageJAlgorithmsExtension.ADD_MASK_QUALIFIER
Conversion rules that convert any input data type into their respective mask data type
|
static Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> |
ImageJAlgorithmsExtension.DECREASE_DIMENSION_CONVERSION
Conversion rules convert higher-dimensional data to a lower-dimensional counterpart.
2D data remains 2D data.
|
static Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> |
ImageJAlgorithmsExtension.DECREASE_DIMENSION_CONVERSION
Conversion rules convert higher-dimensional data to a lower-dimensional counterpart.
2D data remains 2D data.
|
static Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> |
ImageJAlgorithmsExtension.REMOVE_MASK_QUALIFIER
Conversion rules from mask data types to their respective 8-bit types
|
static Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> |
ImageJAlgorithmsExtension.REMOVE_MASK_QUALIFIER
Conversion rules from mask data types to their respective 8-bit types
|
static Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> |
ImageJAlgorithmsExtension.TO_2D_CONVERSION
Conversion rules convert higher-dimensional data to their 2D counterparts
|
static Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> |
ImageJAlgorithmsExtension.TO_2D_CONVERSION
Conversion rules convert higher-dimensional data to their 2D counterparts
|
static Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> |
ImageJAlgorithmsExtension.TO_3D_CONVERSION
Conversion rules convert data to their 3D counterparts
|
static Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> |
ImageJAlgorithmsExtension.TO_3D_CONVERSION
Conversion rules convert data to their 3D counterparts
|
static Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> |
ImageJAlgorithmsExtension.TO_COLOR_RGB_CONVERSION
Conversion rules that convert color types into colored images
|
static Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> |
ImageJAlgorithmsExtension.TO_COLOR_RGB_CONVERSION
Conversion rules that convert color types into colored images
|
static Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> |
ImageJAlgorithmsExtension.TO_GRAYSCALE_CONVERSION
Conversion rules that convert color types into greyscale
|
static Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> |
ImageJAlgorithmsExtension.TO_GRAYSCALE_CONVERSION
Conversion rules that convert color types into greyscale
|
static Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> |
ImageJAlgorithmsExtension.TO_GRAYSCALE32F_CONVERSION
Conversion rules that convert color types into colored images
|
static Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> |
ImageJAlgorithmsExtension.TO_GRAYSCALE32F_CONVERSION
Conversion rules that convert color types into colored images
|
| Modifier and Type | Class and Description |
|---|---|
class |
MaskDrawerFormData
Structural
FormData for drawing masks |
class |
ROIDrawerFormData
Structural
FormData for drawing ROIs |
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
MaskDrawerFormData.duplicate(JIPipeProgressInfo progressInfo) |
JIPipeData |
ROIDrawerFormData.duplicate(JIPipeProgressInfo progressInfo) |
| Constructor and Description |
|---|
SimpleImageAndRoiIteratingAlgorithm(JIPipeNodeInfo info,
Class<? extends ImagePlusData> inputClass,
Class<? extends ImagePlusData> outputClass,
String outputInheritance,
Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> inheritanceConversions) |
SimpleImageAndRoiIteratingAlgorithm(JIPipeNodeInfo info,
Class<? extends ImagePlusData> inputClass,
Class<? extends ImagePlusData> outputClass,
String outputInheritance,
Map<Class<? extends JIPipeData>,Class<? extends JIPipeData>> inheritanceConversions) |
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
OMEImageToROITypeConverter.convert(JIPipeData input) |
JIPipeData |
PlotToImageTypeConverter.convert(JIPipeData input) |
JIPipeData |
LUTToImageTypeConverter.convert(JIPipeData input) |
JIPipeData |
ImplicitImageTypeConverter.convert(JIPipeData input) |
JIPipeData |
ImagePlusToOMEImageTypeConverter.convert(JIPipeData input) |
JIPipeData |
OMEImageToImagePlusTypeConverter.convert(JIPipeData input) |
JIPipeData |
OmeImageToOMEXMLTypeConverter.convert(JIPipeData input) |
JIPipeData |
ImageToLUTTypeConverter.convert(JIPipeData input) |
| Modifier and Type | Method and Description |
|---|---|
Class<? extends JIPipeData> |
OMEImageToROITypeConverter.getInputType() |
Class<? extends JIPipeData> |
PlotToImageTypeConverter.getInputType() |
Class<? extends JIPipeData> |
LUTToImageTypeConverter.getInputType() |
Class<? extends JIPipeData> |
ImplicitImageTypeConverter.getInputType() |
Class<? extends JIPipeData> |
ImagePlusToOMEImageTypeConverter.getInputType() |
Class<? extends JIPipeData> |
OMEImageToImagePlusTypeConverter.getInputType() |
Class<? extends JIPipeData> |
OmeImageToOMEXMLTypeConverter.getInputType() |
Class<? extends JIPipeData> |
ImageToLUTTypeConverter.getInputType() |
Class<? extends JIPipeData> |
OMEImageToROITypeConverter.getOutputType() |
Class<? extends JIPipeData> |
PlotToImageTypeConverter.getOutputType() |
Class<? extends JIPipeData> |
LUTToImageTypeConverter.getOutputType() |
Class<? extends JIPipeData> |
ImplicitImageTypeConverter.getOutputType() |
Class<? extends JIPipeData> |
ImagePlusToOMEImageTypeConverter.getOutputType() |
Class<? extends JIPipeData> |
OMEImageToImagePlusTypeConverter.getOutputType() |
Class<? extends JIPipeData> |
OmeImageToOMEXMLTypeConverter.getOutputType() |
Class<? extends JIPipeData> |
ImageToLUTTypeConverter.getOutputType() |
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
OMEImageToROITypeConverter.convert(JIPipeData input) |
JIPipeData |
PlotToImageTypeConverter.convert(JIPipeData input) |
JIPipeData |
LUTToImageTypeConverter.convert(JIPipeData input) |
JIPipeData |
ImplicitImageTypeConverter.convert(JIPipeData input) |
JIPipeData |
ImagePlusToOMEImageTypeConverter.convert(JIPipeData input) |
JIPipeData |
OMEImageToImagePlusTypeConverter.convert(JIPipeData input) |
JIPipeData |
OmeImageToOMEXMLTypeConverter.convert(JIPipeData input) |
JIPipeData |
ImageToLUTTypeConverter.convert(JIPipeData input) |
| Constructor and Description |
|---|
ImplicitImageTypeConverter(Class<? extends JIPipeData> inputType,
Class<? extends JIPipeData> outputType) |
ImplicitImageTypeConverter(Class<? extends JIPipeData> inputType,
Class<? extends JIPipeData> outputType) |
| Modifier and Type | Method and Description |
|---|---|
Class<? extends JIPipeData> |
ImagePlusDataToImageWindowImageJExporter.getExportedJIPipeDataType() |
Class<? extends JIPipeData> |
RoiManagerImageJExporter.getExportedJIPipeDataType() |
Class<? extends JIPipeData> |
OMEImageToImageWindowImageJExporter.getExportedJIPipeDataType() |
Class<? extends JIPipeData> |
OMEImageFromImageWindowImageJImporter.getImportedJIPipeDataType() |
Class<? extends JIPipeData> |
ImagePlusDataFromImageWindowImageJImporter.getImportedJIPipeDataType() |
Class<? extends JIPipeData> |
RoiManagerImageJImporter.getImportedJIPipeDataType() |
| Modifier and Type | Class and Description |
|---|---|
class |
ImagePlusData
ImageJ image
|
class |
LUTData |
class |
OMEImageData
Data that is a representation of all information saved in Bio-Formats
|
class |
ROIListData
Contains
Roi |
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
LUTData.duplicate(JIPipeProgressInfo progressInfo) |
JIPipeData |
OMEImageData.duplicate(JIPipeProgressInfo progressInfo) |
JIPipeData |
ROIListData.duplicate(JIPipeProgressInfo progressInfo) |
JIPipeData |
ImagePlusData.duplicate(JIPipeProgressInfo progressInfo) |
| Modifier and Type | Interface and Description |
|---|---|
interface |
ColorImageData
Annotates a data type as color image
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImagePlusColorData
A colored image without dimension.
|
class |
ImagePlusColorHSBData
HSV colored image without dimension.
|
class |
ImagePlusColorLABData
LAB colored image without dimension.
|
class |
ImagePlusColorRGBData
RGB colored image without dimension.
|
| Modifier and Type | Interface and Description |
|---|---|
interface |
Image2DData
Annotates an image as 2D image
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImagePlus2DData
2D image
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImagePlus2DColorData
A colored image without dimension.
|
class |
ImagePlus2DColorHSBData
RGB colored 2D image
|
class |
ImagePlus2DColorLABData
RGB colored 2D image
|
class |
ImagePlus2DColorRGBData
RGB colored 2D image
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImagePlus2DGreyscale16UData
16-bit greyscale 2D image
|
class |
ImagePlus2DGreyscale32FData
32 bit float greyscale 2D image
|
class |
ImagePlus2DGreyscale8UData
8-bit greyscale 2D image
|
class |
ImagePlus2DGreyscaleData
Greyscale 2D image
|
class |
ImagePlus2DGreyscaleMaskData
8-bit mask 2D image
|
| Modifier and Type | Interface and Description |
|---|---|
interface |
Image3DData
Annotates an image as 3D image
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImagePlus3DData
3D image
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImagePlus3DColorData
A colored image without dimension.
|
class |
ImagePlus3DColorHSBData
RGB color 3D image
|
class |
ImagePlus3DColorLABData
RGB color 3D image
|
class |
ImagePlus3DColorRGBData
RGB color 3D image
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImagePlus3DGreyscale16UData
16-bit greyscale 3D image
|
class |
ImagePlus3DGreyscale32FData
32-bit floating point greyscale 3D image
|
class |
ImagePlus3DGreyscale8UData
8-bit greyscale 3D image
|
class |
ImagePlus3DGreyscaleData
Greyscale 3D image
|
class |
ImagePlus3DGreyscaleMaskData
8-bit mask 3D image
|
| Modifier and Type | Interface and Description |
|---|---|
interface |
Image4DData
Annotates an image as 2D image
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImagePlus4DData
4D image
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImagePlus4DColorData
A colored image without dimension.
|
class |
ImagePlus4DColorHSBData
RGB color 4D image
|
class |
ImagePlus4DColorLABData
RGB color 4D image
|
class |
ImagePlus4DColorRGBData
RGB color 4D image
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImagePlus4DGreyscale16UData
16-bit greyscale 4D image
|
class |
ImagePlus4DGreyscale32FData
32-bit floating point greyscale 4D image
|
class |
ImagePlus4DGreyscale8UData
8-bit greyscale 4D image
|
class |
ImagePlus4DGreyscaleData
Greyscale 4D image
|
class |
ImagePlus4DGreyscaleMaskData
Mask 4D image
|
| Modifier and Type | Interface and Description |
|---|---|
interface |
Image5DData
Annotates an image as 2D image
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImagePlus5DData
5D image
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImagePlus5DColorData
A colored image without dimension.
|
class |
ImagePlus5DColorHSBData
RGB color 5D image
|
class |
ImagePlus5DColorLABData
RGB color 5D image
|
class |
ImagePlus5DColorRGBData
RGB color 5D image
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImagePlus5DGreyscale16UData
16-bit greyscale 5D image
|
class |
ImagePlus5DGreyscale32FData
32-bit floating point greyscale image
|
class |
ImagePlus5DGreyscale8UData
8-bit greyscale 5D image
|
class |
ImagePlus5DGreyscaleData
Greyscale 5D image
|
class |
ImagePlus5DGreyscaleMaskData
Mask 5D image
|
| Modifier and Type | Interface and Description |
|---|---|
interface |
FFTImageData
Annotates an image as FFT image
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImagePlusFFT2DData
2D image in frequency space
|
class |
ImagePlusFFT3DData
3D image in frequency space
|
class |
ImagePlusFFT4DData
4D image in frequency space
|
class |
ImagePlusFFT5DData
5D image in frequency space
|
class |
ImagePlusFFTData
Image in frequency space
|
| Modifier and Type | Interface and Description |
|---|---|
interface |
GreyscaleImageData
Annotates an image as greyscale image
|
| Modifier and Type | Class and Description |
|---|---|
class |
ImagePlusGreyscale16UData
16-bit greyscale image without dimension.
|
class |
ImagePlusGreyscale32FData
32 bit float greyscale image without dimension.
|
class |
ImagePlusGreyscale8UData
8-bit greyscale image without dimension.
|
class |
ImagePlusGreyscaleData
Greyscale image without dimension.
|
class |
ImagePlusGreyscaleMaskData
8-bit mask without dimension.
|
| Modifier and Type | Method and Description |
|---|---|
void |
AddROIToActiveJIPipeImageViewerDataDisplay.display(JIPipeData data,
String displayName,
JIPipeWorkbench workbench,
JIPipeDataSource source) |
void |
OpenInImageJDataDisplay.display(JIPipeData data,
String displayName,
JIPipeWorkbench workbench,
JIPipeDataSource source) |
void |
AddToROIManagerDataDisplay.display(JIPipeData data,
String displayName,
JIPipeWorkbench workbench,
JIPipeDataSource source) |
void |
AddROIToJIPipeImageViewerDataDisplay.display(JIPipeData data,
String displayName,
JIPipeWorkbench workbench,
JIPipeDataSource source) |
| Modifier and Type | Method and Description |
|---|---|
void |
ImportImageJPathDataOperation.display(JIPipeData data,
String displayName,
JIPipeWorkbench workbench,
JIPipeDataSource source) |
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
ParametersDataToResultsTableDataConverter.convert(JIPipeData input) |
| Modifier and Type | Method and Description |
|---|---|
Class<? extends JIPipeData> |
ParametersDataToResultsTableDataConverter.getInputType() |
Class<? extends JIPipeData> |
ParametersDataToResultsTableDataConverter.getOutputType() |
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
ParametersDataToResultsTableDataConverter.convert(JIPipeData input) |
| Modifier and Type | Class and Description |
|---|---|
class |
ParametersData
Stores the parameters of an algorithm
|
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
ParametersData.duplicate(JIPipeProgressInfo progressInfo) |
| Modifier and Type | Class and Description |
|---|---|
class |
OMERODatasetReferenceData |
class |
OMEROGroupReferenceData
Data that stores a reference to an OMERO project
|
class |
OMEROImageReferenceData |
class |
OMEROProjectReferenceData
Data that stores a reference to an OMERO project
|
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
OMEROGroupReferenceData.duplicate(JIPipeProgressInfo progressInfo) |
JIPipeData |
OMERODatasetReferenceData.duplicate(JIPipeProgressInfo progressInfo) |
JIPipeData |
OMEROImageReferenceData.duplicate(JIPipeProgressInfo progressInfo) |
JIPipeData |
OMEROProjectReferenceData.duplicate(JIPipeProgressInfo progressInfo) |
| Modifier and Type | Method and Description |
|---|---|
void |
OptionalDataAnnotationNameParameter.addAnnotationIfEnabled(Collection<JIPipeDataAnnotation> annotations,
JIPipeData value)
Adds the annotation with given value of the parameter is enabled
|
JIPipeDataAnnotation |
OptionalDataAnnotationNameParameter.createAnnotation(JIPipeData value)
Creates a new annotation with the defined name and value
|
| Constructor and Description |
|---|
JIPipeDataInfoRef(Class<? extends JIPipeData> klass) |
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
PlotToTableConverter.convert(JIPipeData input) |
| Modifier and Type | Method and Description |
|---|---|
Class<? extends JIPipeData> |
PlotToTableConverter.getInputType() |
Class<? extends JIPipeData> |
PlotToTableConverter.getOutputType() |
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
PlotToTableConverter.convert(JIPipeData input) |
| Modifier and Type | Class and Description |
|---|---|
class |
BarBoxAndWhiskerCategoryPlotData
A box and whisker plot
Series table columns: Value (Double), Category (String), Group (String)
Multiple series: Yes
|
class |
BarCategoryPlotData
A bar category plot
Series table columns: Value (Double), Category (String), Group (String)
Multiple series: No
|
class |
BarStatisticalCategoryPlotData
A statistical bar category plot
Series table columns: Value (Double), Category (String), Group (String)
Multiple series: No
|
class |
BoxAndWhiskerCategoryPlotData
Contains data for box and whisker category plots category plots.
|
class |
CategoryPlotData
Contains data for category plots.
|
class |
HistogramPlotData
Contains data to generate a histogram plot
Series table colums: Value (Numeric)
Multiple series: Yes
|
class |
LineCategoryPlotData
Generates a bar category plot
Series table columns: Value (Double), Category (String), Group (String)
Multiple series: No
|
class |
LineStatisticalCategoryPlotData
Generates a bar category plot
Series table columns: Value (Double), Category (String), Group (String)
Multiple series: No
|
class |
LineXYPlotData
Generates a bar category plot
Series table columns: X (Double), Y (Double)
Multiple series: Yes
|
class |
Pie2DPlotData
Generates a Pie chart
Series table columns: Amount (Double), Category (String)
Multiple series: No
|
class |
Pie3DPlotData
Generates a Pie chart
Series table columns: Amount (Double), Category (String)
Multiple series: No
|
class |
PiePlotData
Contains data for pie plots.
|
class |
PlotData
Contains all necessary data to generate a plot
|
class |
PlotDataSeries
A data series (table) that is rendered as plot series
|
class |
ScatterXYPlotData
A scatter XY plot
Series table columns: X (Double), Y (Double)
Multiple series: Yes
|
class |
StackedBarCategoryPlotData
A stacked bar plot
Series table columns: Value (Double), Category (String), Group (String)
Multiple series: No
|
class |
StatisticalCategoryPlotData
Contains data for statistical plots.
|
class |
XYPlotData
Contains data for XY plots
Any plot has following columns:
X (Double), Y (Double)
|
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
PlotData.duplicate(JIPipeProgressInfo progressInfo) |
| Modifier and Type | Method and Description |
|---|---|
protected JIPipeData |
PlotDataSlotPreview.loadData(Path storageFolder) |
| Modifier and Type | Method and Description |
|---|---|
void |
OpenPlotInJIPipeDataOperation.display(JIPipeData data,
String displayName,
JIPipeWorkbench workbench,
JIPipeDataSource source) |
| Modifier and Type | Class and Description |
|---|---|
class |
JsonData |
class |
StringData
A data type that contains a string
|
class |
XMLData |
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
StringDataConverter.convert(JIPipeData input) |
JIPipeData |
StringData.duplicate(JIPipeProgressInfo progressInfo) |
| Modifier and Type | Method and Description |
|---|---|
Class<? extends JIPipeData> |
StringDataConverter.getInputType() |
Class<? extends JIPipeData> |
StringDataConverter.getOutputType() |
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
StringDataConverter.convert(JIPipeData input) |
| Constructor and Description |
|---|
StringDataConverter(Class<? extends JIPipeData> outputType) |
| Modifier and Type | Interface and Description |
|---|---|
interface |
MutableTableColumn
A
TableColumn that carries data and is therefore mutable |
| Modifier and Type | Class and Description |
|---|---|
class |
TableColumnReference
A table column that references a column within a
ResultsTableData |
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
DoubleArrayColumnToTableConverter.convert(JIPipeData input) |
JIPipeData |
StringArrayColumnToTableConverter.convert(JIPipeData input) |
JIPipeData |
TableColumnReference.duplicate(JIPipeProgressInfo progressInfo) |
| Modifier and Type | Method and Description |
|---|---|
Class<? extends JIPipeData> |
DoubleArrayColumnToTableConverter.getInputType() |
Class<? extends JIPipeData> |
StringArrayColumnToTableConverter.getInputType() |
Class<? extends JIPipeData> |
DoubleArrayColumnToTableConverter.getOutputType() |
Class<? extends JIPipeData> |
StringArrayColumnToTableConverter.getOutputType() |
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
DoubleArrayColumnToTableConverter.convert(JIPipeData input) |
JIPipeData |
StringArrayColumnToTableConverter.convert(JIPipeData input) |
| Modifier and Type | Method and Description |
|---|---|
Class<? extends JIPipeData> |
ResultsTableDataImageJExporter.getExportedJIPipeDataType() |
Class<? extends JIPipeData> |
ResultsTableDataImageJImporter.getImportedJIPipeDataType() |
| Modifier and Type | Interface and Description |
|---|---|
interface |
TableColumn
An
JIPipeData type that represents a column. |
| Modifier and Type | Class and Description |
|---|---|
class |
AnnotationTableData
A special kind of
ResultsTableData that stores annotation columns. |
class |
DoubleArrayTableColumn
TableColumn that contains doubles. |
class |
FloatArrayTableColumn
TableColumn that contains doubles. |
class |
RelabeledTableColumn |
class |
ResultsTableData
Data containing a
ResultsTable |
class |
RowIndexTableColumn
Generates numbers from 0 to row count
|
class |
StringArrayTableColumn
TableColumn that contains doubles. |
class |
ZeroTableColumn
Generates numbers from 0 to row count
|
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
ZeroTableColumn.duplicate(JIPipeProgressInfo progressInfo) |
JIPipeData |
DoubleArrayTableColumn.duplicate(JIPipeProgressInfo progressInfo) |
JIPipeData |
RowIndexTableColumn.duplicate(JIPipeProgressInfo progressInfo) |
JIPipeData |
ResultsTableData.duplicate(JIPipeProgressInfo progressInfo) |
JIPipeData |
StringArrayTableColumn.duplicate(JIPipeProgressInfo progressInfo) |
JIPipeData |
FloatArrayTableColumn.duplicate(JIPipeProgressInfo progressInfo) |
JIPipeData |
RelabeledTableColumn.duplicate(JIPipeProgressInfo progressInfo) |
| Modifier and Type | Method and Description |
|---|---|
static boolean |
TableColumn.isGeneratingTableColumn(Class<? extends JIPipeData> klass)
Returns true if the parameter is a generating table column.
|
static boolean |
TableColumn.isMutableTableColumn(Class<? extends JIPipeData> klass)
Returns true if the parameter is a mutable table column.
|
| Modifier and Type | Method and Description |
|---|---|
void |
OpenResultsTableInJIPipeTabDataOperation.display(JIPipeData data,
String displayName,
JIPipeWorkbench workbench,
JIPipeDataSource source) |
void |
CacheAwareOpenResultsTableInJIPipeDataOperation.display(JIPipeData data,
String displayName,
JIPipeWorkbench workbench,
JIPipeDataSource source) |
void |
OpenResultsTableInImageJDataOperation.display(JIPipeData data,
String displayName,
JIPipeWorkbench workbench,
JIPipeDataSource source) |
| Modifier and Type | Class and Description |
|---|---|
class |
JIPipeOutputData |
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
PathDataToJIPipeOutputConverter.convert(JIPipeData input) |
| Modifier and Type | Method and Description |
|---|---|
Class<? extends JIPipeData> |
PathDataToJIPipeOutputConverter.getInputType() |
Class<? extends JIPipeData> |
PathDataToJIPipeOutputConverter.getOutputType() |
| Modifier and Type | Method and Description |
|---|---|
JIPipeData |
PathDataToJIPipeOutputConverter.convert(JIPipeData input) |
| Modifier and Type | Method and Description |
|---|---|
void |
ImportJIPipeProjectDataOperation.display(JIPipeData data,
String displayName,
JIPipeWorkbench workbench,
JIPipeDataSource source) |
| Modifier and Type | Method and Description |
|---|---|
static JIPipeDataDisplayOperation |
JIPipeDataTableRowUI.getMainOperation(Class<? extends JIPipeData> dataClass) |
| Modifier and Type | Method and Description |
|---|---|
protected Class<? extends JIPipeData> |
JIPipeDataSlotUI.getSlotDataType() |
| Modifier and Type | Method and Description |
|---|---|
protected JIPipeData |
JIPipeAsyncResultDataSlotPreview.loadData(Path storageFolder)
Run in a different thread.
|
| Modifier and Type | Method and Description |
|---|---|
static JIPipeDataImportOperation |
JIPipeDefaultResultDataSlotRowUI.getMainOperation(Class<? extends JIPipeData> dataClass) |
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