Examples

Track analysis of unlabeled nematodes

Live worms of the species C. elegans were recorded via transmitted light microscopy. The resulting time-series images are analyzed by a JIPipe pipeline.

Project + Data

Using the Weka segmentation nodes

A small example showcasing how to utilize the Trainable Weka Segmentation nodes.

Tutorial: cellpose training

Accompanying data and project for the tutorial ‘Cellpose training’.

Tutorial: cellpose segmentation

Accompanying data and project for the tutorial ‘Cellpose segmentation’.

Tutorial: integrating ImageJ macros

Accompanying data and project for the tutorial ‘Integrating ImageJ macros’.

Tutorial: applying multiple parameter sets

Accompanying data and project for the tutorial ‘Applying multiple parameter sets’.

Tutorial: Annotating data with measurements

Accompanying data and project for the tutorial ‘Annotating data with measurements’.

Tutorial: Exporting data

Accompanying data and project for the tutorial ‘Exporting data’.

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