Download JIPipe 1.75.1
Image processing
Various nodes that generate statistics on labels
- Node “Merge 2D slices into hyperstack” (inverse operation of “Split into 2D slices”). Intended for more advanced filtering of hyperstack slices.
- Node “Merge small labels” (merges labels with a low number of pixels into a neighboring label index)
- Node “Key/Value Histogram 5D”
- Node “Key/Value threshold statistics 5D”
- Node “Key/Value statistics 5D (fast averages)”
- Node “Key/Value threshold statistics 5D (fast averages)”
- Convolve operators now have normalization parameter
- Convolve operators now support RGB images (same behavior as ImageJ)
Data processing
Node “Filter by annotation” (more compact version of “Split & filter by annotation” that applies the same operation)
Expressions
- New function STRING_FORMAT (C-style string formatting)
- New function NUM (Alternative to TO_NUMBER)
- Expressions that return numbers: valid numeric strings are automatically converted to numbers (before there was an exception if not a Number type is returned)
- Escaping of expressions did not work as expected (errors if sub-strings contained spaces)
User interface
- New “Memory” menu in the status bar that contains all memory-related operations (before was only a gear icon)
- “Reduce memory” moved into the “Memory” menu
- Number editor behaved erratically in non-english locales (now uses the advanced number parser capable of parsing NA and infinity)
Bugfixes and small improvements
Please refer to the commits in the JIPipe GitHub repository to find a list of all bugfixes and improvements.
- Various expression-based nodes now support custom expression variables: Filter labels by statistics, Filter ROI by statistics, Change ROI properties (Expression), Set ROI metadata by statistics (expression), Sort ROI list (expression)
- Numeric function expression now appropriately sets the default variable
- Crop 2D node: expression variables are now all annotated
- “Examples” panel now always shown
- Data processing: empty data batches are removed/ignored (only affects nodes with optional inputs)
- Various exceptions caused by the “Data batches” panel
- Image viewer: Movie/sequence export was not adhering to magnification level (cut-off images)
- Users were able to enable ROI/Mask for “Bright spots segmentation 2D”, “Hessian segmentation 2D” and “Internal gradient segmentation 2D”. Users are now advised to build a custom set of nodes (documentation was added)