org.hkijena.jipipe.plugins.r

Interface REnvironmentAccessNode

All Known Implementing Classes:

ImportRDatasetAlgorithm, IteratingRScriptAlgorithm, MergingRScriptAlgorithm

public interface REnvironmentAccessNode

Interface that should be used by nodes that access the OMERO credentials environments

Method Summary

Modifier and Type	Method and Description
default REnvironment	getConfiguredREnvironment() Gets the correct R environment.
OptionalREnvironment	getOverrideEnvironment()
default void	reportConfiguredREnvironmentValidity(JIPipeValidationReportContext context, JIPipeValidationReport report) Generates a validity report entry if the configured environment has an issue

Method Detail

getOverrideEnvironment

OptionalREnvironment getOverrideEnvironment()

getConfiguredREnvironment

default REnvironment getConfiguredREnvironment()

Gets the correct R environment. Adheres to the chain of overrides.

Returns:

the environment

reportConfiguredREnvironmentValidity

default void reportConfiguredREnvironmentValidity(JIPipeValidationReportContext context,
                                                  JIPipeValidationReport report)

Generates a validity report entry if the configured environment has an issue

Parameters:

context - the context

report - the report