org.hkijena.jipipe.plugins.imagejalgorithms.utils.turboreg

Class TurboRegTransformer

java.lang.Object

org.hkijena.jipipe.plugins.imagejalgorithms.utils.turboreg.TurboRegTransformer

public class TurboRegTransformer
extends Object

Constructor Summary

Constructors

Constructor and Description
TurboRegTransformer(TurboRegImage sourceImg, TurboRegMask sourceMsk, TurboRegPointHandler sourcePh, TurboRegImage targetImg, TurboRegMask targetMsk, TurboRegPointHandler targetPh, TurboRegTransformationType transformation, boolean accelerated, boolean interactive) Keep a local copy of most everything.

Method Summary

Modifier and Type	Method and Description
void	appendTransformation(String pathAndFilename) Append the current landmarks into a text file.
void	doBatchFinalTransform(float[] pixels) Compute the final image.
ij.ImagePlus	doFinalTransform(int width, int height) Compute the final image.
float[]	doFinalTransform(TurboRegImage sourceImg, TurboRegPointHandler sourcePh, TurboRegImage targetImg, TurboRegPointHandler targetPh, TurboRegTransformationType transformation, boolean accelerated) Compute the final image.
void	doRegistration() Refine the landmarks.
String	saveTransformation(String filename) Save the current landmarks into a text file and return the path and name of the file.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TurboRegTransformer

public TurboRegTransformer(TurboRegImage sourceImg,
                           TurboRegMask sourceMsk,
                           TurboRegPointHandler sourcePh,
                           TurboRegImage targetImg,
                           TurboRegMask targetMsk,
                           TurboRegPointHandler targetPh,
                           TurboRegTransformationType transformation,
                           boolean accelerated,
                           boolean interactive)

Keep a local copy of most everything. Select among the pre-stored constants.

Parameters:

targetImg - Target image pyramid.

targetMsk - Target mask pyramid.

sourceImg - Source image pyramid.

sourceMsk - Source mask pyramid.

targetPh - Target TurboRegPointHandler object.

sourcePh - Source TurboRegPointHandler object.

transformation - Transformation code.

accelerated - Trade-off between speed and accuracy.

interactive - Shows or hides the resulting image.

Method Detail

appendTransformation

public void appendTransformation(String pathAndFilename)

Append the current landmarks into a text file. Rigid format.

Parameters:

pathAndFilename - Path and name of the file where batch results are being written.

doBatchFinalTransform

public void doBatchFinalTransform(float[] pixels)

Compute the final image.

doFinalTransform

public ij.ImagePlus doFinalTransform(int width,
                                     int height)

Compute the final image.

doFinalTransform

public float[] doFinalTransform(TurboRegImage sourceImg,
                                TurboRegPointHandler sourcePh,
                                TurboRegImage targetImg,
                                TurboRegPointHandler targetPh,
                                TurboRegTransformationType transformation,
                                boolean accelerated)

Compute the final image.

doRegistration

public void doRegistration()

Refine the landmarks.

saveTransformation

public String saveTransformation(String filename)

Save the current landmarks into a text file and return the path and name of the file. Rigid format.