Uses of Class
org.hkijena.jipipe.api.project.JIPipeProject

Packages that use JIPipeProject

Package	Description
org.hkijena.jipipe
org.hkijena.jipipe.api
org.hkijena.jipipe.api.cache
org.hkijena.jipipe.api.compartments
org.hkijena.jipipe.api.compartments.algorithms
org.hkijena.jipipe.api.data.serialization
org.hkijena.jipipe.api.grouping
org.hkijena.jipipe.api.history
org.hkijena.jipipe.api.nodes
org.hkijena.jipipe.api.nodes.database
org.hkijena.jipipe.api.project
org.hkijena.jipipe.api.registries
org.hkijena.jipipe.api.run
org.hkijena.jipipe.desktop.app
org.hkijena.jipipe.desktop.app.cache
org.hkijena.jipipe.desktop.app.cache.importers
org.hkijena.jipipe.desktop.app.compat
org.hkijena.jipipe.desktop.app.datatable
org.hkijena.jipipe.desktop.app.grapheditor.commons
org.hkijena.jipipe.desktop.app.grapheditor.flavors.compartments.actions
org.hkijena.jipipe.desktop.app.grapheditor.flavors.pipeline.actions
org.hkijena.jipipe.desktop.app.project
org.hkijena.jipipe.desktop.app.quickrun
org.hkijena.jipipe.desktop.app.resultanalysis
org.hkijena.jipipe.desktop.app.settings
org.hkijena.jipipe.desktop.app.settings.project
org.hkijena.jipipe.desktop.commons.components
org.hkijena.jipipe.plugins.cellpose
org.hkijena.jipipe.plugins.expressions
org.hkijena.jipipe.plugins.ijfilaments
org.hkijena.jipipe.plugins.ijocr
org.hkijena.jipipe.plugins.ilastik
org.hkijena.jipipe.plugins.nodetemplate
org.hkijena.jipipe.plugins.omero
org.hkijena.jipipe.plugins.omnipose
org.hkijena.jipipe.plugins.parameters.library.graph
org.hkijena.jipipe.plugins.pipelinerender
org.hkijena.jipipe.plugins.python
org.hkijena.jipipe.plugins.r

Uses of JIPipeProject in org.hkijena.jipipe

Methods in org.hkijena.jipipe that return JIPipeProject

Modifier and Type	Method and Description
static JIPipeProject	JIPipe.loadProject(Path fileName) Loads a project
static JIPipeProject	JIPipe.loadProject(Path fileName, JIPipeNotificationInbox notifications) Loads a project
static JIPipeProject	JIPipe.loadProject(Path fileName, JIPipeValidationReport report) Loads a project
static JIPipeProject	JIPipe.loadProject(Path fileName, JIPipeValidationReport report, JIPipeNotificationInbox notifications) Loads a project

Methods in org.hkijena.jipipe with parameters of type JIPipeProject

Modifier and Type	Method and Description
static JIPipeGraphRun	JIPipe.enqueueProject(JIPipeProject project, JIPipeGraphRunConfiguration settings) Runs a project in the current thread.
static JIPipeGraphRun	JIPipe.enqueueProject(JIPipeProject project, Path outputFolder, int threads) Runs a project in a different thread.
static JIPipeGraphRun	JIPipe.runProject(JIPipeProject project, JIPipeGraphRunConfiguration settings) Runs a project in the current thread.
static JIPipeGraphRun	JIPipe.runProject(JIPipeProject project, Path outputFolder, int threads) Runs a project in the current thread.

Uses of JIPipeProject in org.hkijena.jipipe.api

Methods in org.hkijena.jipipe.api that return JIPipeProject

Modifier and Type	Method and Description
JIPipeProject	JIPipeWorkbench.getProject() Returns the current project if this workbench has an associated project

Uses of JIPipeProject in org.hkijena.jipipe.api.cache

Constructors in org.hkijena.jipipe.api.cache with parameters of type JIPipeProject

Constructor and Description
JIPipeLocalProjectMemoryCache(JIPipeProject project)

Uses of JIPipeProject in org.hkijena.jipipe.api.compartments

Methods in org.hkijena.jipipe.api.compartments with parameters of type JIPipeProject

Modifier and Type	Method and Description
JIPipeProjectCompartment	JIPipeExportedCompartment.addTo(JIPipeProject project, String compartmentName) Adds the compartment to a project as the specified compartment name

Uses of JIPipeProject in org.hkijena.jipipe.api.compartments.algorithms

Methods in org.hkijena.jipipe.api.compartments.algorithms that return JIPipeProject

Modifier and Type	Method and Description
JIPipeProject	JIPipeProjectCompartment.getRuntimeProject()

Methods in org.hkijena.jipipe.api.compartments.algorithms with parameters of type JIPipeProject

Modifier and Type	Method and Description
void	JIPipeProjectCompartment.setRuntimeProject(JIPipeProject runtimeProject) Sets the project.

Uses of JIPipeProject in org.hkijena.jipipe.api.data.serialization

Methods in org.hkijena.jipipe.api.data.serialization with parameters of type JIPipeProject

Modifier and Type	Method and Description
void	JIPipeMergedDataTableInfo.add(JIPipeProject project, JIPipeDataSlot dataSlot, JIPipeDataTableInfo table) Adds an JIPipeDataTableInfo

Uses of JIPipeProject in org.hkijena.jipipe.api.grouping

Methods in org.hkijena.jipipe.api.grouping with parameters of type JIPipeProject

Modifier and Type	Method and Description
void	JIPipeGraphWrapperAlgorithm.setRuntimeProject(JIPipeProject runtimeProject)

Uses of JIPipeProject in org.hkijena.jipipe.api.history

Methods in org.hkijena.jipipe.api.history that return JIPipeProject

Modifier and Type	Method and Description
JIPipeProject	JIPipeProjectHistoryJournal.getProject()

Constructors in org.hkijena.jipipe.api.history with parameters of type JIPipeProject

Constructor and Description
JIPipeProjectHistoryJournal(JIPipeProject project, JIPipeRunnableQueue snapshotQueue)

Uses of JIPipeProject in org.hkijena.jipipe.api.nodes

Methods in org.hkijena.jipipe.api.nodes that return JIPipeProject

Modifier and Type	Method and Description
JIPipeProject	JIPipeGraph.getProject() Gets the JIPipeProject if this is a project or project compartment graph.
JIPipeProject	JIPipeGraphNode.getProject()
JIPipeProject	JIPipeGraphNode.getRuntimeProject() Returns the current project associated with the current run

Methods in org.hkijena.jipipe.api.nodes with parameters of type JIPipeProject

Modifier and Type	Method and Description
void	JIPipeGraphNode.setRuntimeProject(JIPipeProject runtimeProject) Sets the current project associated with the current run

Uses of JIPipeProject in org.hkijena.jipipe.api.nodes.database

Methods in org.hkijena.jipipe.api.nodes.database that return JIPipeProject

Modifier and Type	Method and Description
JIPipeProject	JIPipeNodeDatabase.getProject()

Constructors in org.hkijena.jipipe.api.nodes.database with parameters of type JIPipeProject

Constructor and Description
JIPipeNodeDatabase(JIPipeProject project)

Uses of JIPipeProject in org.hkijena.jipipe.api.project

Methods in org.hkijena.jipipe.api.project that return JIPipeProject

Modifier and Type	Method and Description
JIPipeProject	JIPipeProject.Deserializer.deserialize(com.fasterxml.jackson.core.JsonParser jsonParser, com.fasterxml.jackson.databind.DeserializationContext deserializationContext)
JIPipeProject	JIPipeProjectInfoParameters.getProject()
JIPipeProject	JIPipeArchiveProjectRun.getProject()
JIPipeProject	JIPipeProjectTemplate.loadAsProject(JIPipeValidationReport issueReport, JIPipeNotificationInbox inbox) Loads the project
static JIPipeProject	JIPipeProject.loadProject(Path fileName, JIPipeValidationReportContext context, JIPipeValidationReport report) Loads a project from a file
static JIPipeProject	JIPipeProject.loadProject(Path fileName, JIPipeValidationReportContext context, JIPipeValidationReport report, JIPipeNotificationInbox notifications) Loads a project from a file

Methods in org.hkijena.jipipe.api.project with parameters of type JIPipeProject

Modifier and Type	Method and Description
void	JIPipeProject.Serializer.serialize(JIPipeProject project, com.fasterxml.jackson.core.JsonGenerator jsonGenerator, com.fasterxml.jackson.databind.SerializerProvider serializerProvider)
void	JIPipeProjectInfoParameters.setProject(JIPipeProject project)

Constructors in org.hkijena.jipipe.api.project with parameters of type JIPipeProject

Constructor and Description
JIPipeArchiveProjectRun(JIPipeProject project)
JIPipeArchiveProjectToDirectoryRun(JIPipeProject project, Path outputDirectory)
JIPipeArchiveProjectToZIPRun(JIPipeProject project, Path outputFile)

Uses of JIPipeProject in org.hkijena.jipipe.api.registries

Methods in org.hkijena.jipipe.api.registries with parameters of type JIPipeProject

Modifier and Type	Method and Description
boolean	JIPipeNodeTemplateRegistry.addToProject_(JIPipeNodeTemplate template, JIPipeProject project)
void	JIPipeNodeTemplateRegistry.addToProject(Collection<JIPipeNodeTemplate> templates, JIPipeProject project)
boolean	JIPipeNodeTemplateRegistry.addToProject(JIPipeNodeTemplate template, JIPipeProject project)
void	JIPipeNodeTemplateRegistry.editTemplate(JIPipeNodeTemplate target, JIPipeNodeTemplate source, JIPipeProject project)
List<JIPipeNodeTemplate>	JIPipeNodeTemplateRegistry.getAllTemplates(JIPipeProject project) Gets all templates
boolean	JIPipeNodeTemplateRegistry.isInProject(JIPipeNodeTemplate template, JIPipeProject project)
boolean	JIPipeNodeTemplateRegistry.removeFromProject(JIPipeNodeTemplate template, JIPipeProject project)

Uses of JIPipeProject in org.hkijena.jipipe.api.run

Methods in org.hkijena.jipipe.api.run that return JIPipeProject

Modifier and Type	Method and Description
JIPipeProject	JIPipeGraphRun.getProject()

Methods in org.hkijena.jipipe.api.run with parameters of type JIPipeProject

Modifier and Type	Method and Description
boolean	JIPipeProjectRunSet.canResolveAllNodes(JIPipeProject project)
List<JIPipeGraphNode>	JIPipeProjectRunSet.resolveNodes(JIPipeProject project)
static void	JIPipeGraphRun.restoreStoragePaths(JIPipeProject project, Path outputPath) Writes node internal storage paths and output slot storage paths into the graph of the project Used for the legacy result viewer

Constructors in org.hkijena.jipipe.api.run with parameters of type JIPipeProject

Constructor and Description
JIPipeGraphRun(JIPipeProject project, JIPipeGraphRunConfiguration configuration)

Uses of JIPipeProject in org.hkijena.jipipe.desktop.app

Methods in org.hkijena.jipipe.desktop.app that return JIPipeProject

Modifier and Type	Method and Description
static JIPipeProject	JIPipeDesktopProjectWindow.getDefaultTemplateProject() Creates a new project instance based on the current template selection
JIPipeProject	JIPipeDummyWorkbench.getProject()
JIPipeProject	JIPipeDesktopProjectWindow.getProject()
JIPipeProject	JIPipeDesktopProjectWorkbench.getProject()
default JIPipeProject	JIPipeDesktopProjectWorkbenchAccess.getProject()

Methods in org.hkijena.jipipe.desktop.app with parameters of type JIPipeProject

Modifier and Type	Method and Description
static JIPipeDesktopProjectWindow	JIPipeDesktopProjectWindow.getWindowFor(JIPipeProject project) Tries to find the window that belongs to the provided project
void	JIPipeDesktopProjectWindow.loadProject(JIPipeProject project, boolean showIntroduction, boolean isNewProject) Loads a project into the window
static JIPipeDesktopProjectWindow	JIPipeDesktopProjectWindow.newWindow(org.scijava.Context context, JIPipeProject project, boolean showIntroduction, boolean isNewProject) Creates a new window

Constructors in org.hkijena.jipipe.desktop.app with parameters of type JIPipeProject

Constructor and Description
JIPipeDesktopProjectWindow(org.scijava.Context context, JIPipeProject project, boolean showIntroduction, boolean isNewProject)
JIPipeDesktopProjectWorkbench(JIPipeDesktopProjectWindow window, org.scijava.Context context, JIPipeProject project, boolean showIntroduction, boolean isNewProject)
RebuildReportRun(JIPipeProject project, JIPipeDesktopProjectReportUI.ReportSettings reportSettings)

Uses of JIPipeProject in org.hkijena.jipipe.desktop.app.cache

Methods in org.hkijena.jipipe.desktop.app.cache that return JIPipeProject

Modifier and Type	Method and Description
JIPipeProject	JIPipeDesktopLegacyCacheDataViewerWindow.getProject()

Uses of JIPipeProject in org.hkijena.jipipe.desktop.app.cache.importers

Constructors in org.hkijena.jipipe.desktop.app.cache.importers with parameters of type JIPipeProject

Constructor and Description
JIPipeDesktopImportCachedSlotOutputRun(JIPipeProject project, JIPipeGraphNode graphNode, Path inputFolder)

Uses of JIPipeProject in org.hkijena.jipipe.desktop.app.compat

Methods in org.hkijena.jipipe.desktop.app.compat that return JIPipeProject

Modifier and Type	Method and Description
JIPipeProject	JIPipeDesktopRunSingleAlgorithmWindow.getProject()

Uses of JIPipeProject in org.hkijena.jipipe.desktop.app.datatable

Methods in org.hkijena.jipipe.desktop.app.datatable with parameters of type JIPipeProject

Modifier and Type	Method and Description
void	JIPipeDesktopExtendedMultiDataTableModel.add(JIPipeProject project, Store<JIPipeDataTable> dataTableStore) Adds an JIPipeDataTableInfo

Uses of JIPipeProject in org.hkijena.jipipe.desktop.app.grapheditor.commons

Methods in org.hkijena.jipipe.desktop.app.grapheditor.commons that return JIPipeProject

Modifier and Type	Method and Description
JIPipeProject	JIPipeDesktopGraphEditorRunManager.getProject()

Constructors in org.hkijena.jipipe.desktop.app.grapheditor.commons with parameters of type JIPipeProject

Constructor and Description
JIPipeDesktopGraphEditorRunManager(JIPipeProject project, JIPipeDesktopGraphCanvasUI canvasUI, JIPipeDesktopGraphNodeUI nodeUI, JIPipeDesktopDockPanel dockPanel, boolean allowChangePanels)

Uses of JIPipeProject in org.hkijena.jipipe.desktop.app.grapheditor.flavors.compartments.actions

Constructors in org.hkijena.jipipe.desktop.app.grapheditor.flavors.compartments.actions with parameters of type JIPipeProject

Constructor and Description
JIPipeDesktopCompartmentsGraphEditorRunManager(JIPipeProject project, JIPipeDesktopGraphCanvasUI canvasUI, JIPipeDesktopGraphNodeUI nodeUI, JIPipeDesktopDockPanel dockPanel, boolean allowChangePanels)

Uses of JIPipeProject in org.hkijena.jipipe.desktop.app.grapheditor.flavors.pipeline.actions

Constructors in org.hkijena.jipipe.desktop.app.grapheditor.flavors.pipeline.actions with parameters of type JIPipeProject

Constructor and Description
JIPipeDesktopPipelineGraphEditorRunManager(JIPipeProject project, JIPipeDesktopGraphCanvasUI canvasUI, JIPipeDesktopGraphNodeUI nodeUI, JIPipeDesktopDockPanel dockPanel, boolean allowChangePanels)

Uses of JIPipeProject in org.hkijena.jipipe.desktop.app.project

Constructors in org.hkijena.jipipe.desktop.app.project with parameters of type JIPipeProject

Constructor and Description
JIPipeDesktopLoadResultDirectoryIntoCacheRun(JIPipeWorkbench workbench, JIPipeProject project, Path resultPath, boolean clearBefore)
JIPipeDesktopLoadResultZipIntoCacheRun(JIPipeWorkbench workbench, JIPipeProject project, Path resultPath, boolean clearBefore)
JIPipeDesktopSaveProjectAndCacheToDirectoryRun(JIPipeDesktopWorkbench workbench, JIPipeProject project, Path outputPath, boolean addAsRecentProject)
JIPipeDesktopSaveProjectAndCacheToZipRun(JIPipeDesktopWorkbench workbench, JIPipeProject project, Path zipFile)

Uses of JIPipeProject in org.hkijena.jipipe.desktop.app.quickrun

Methods in org.hkijena.jipipe.desktop.app.quickrun that return JIPipeProject

Modifier and Type	Method and Description
JIPipeProject	JIPipeDesktopQuickRun.getProject() The project where the run was created

Constructors in org.hkijena.jipipe.desktop.app.quickrun with parameters of type JIPipeProject

Constructor and Description
JIPipeDesktopQuickRun(JIPipeProject project, JIPipeGraphNode targetNode, JIPipeDesktopQuickRunSettings settings)
JIPipeDesktopQuickRun(JIPipeProject project, List<JIPipeGraphNode> targetNodes, JIPipeDesktopQuickRunSettings settings)
JIPipeDesktopQuickRunSettings(JIPipeProject project) Creates a new instance

Uses of JIPipeProject in org.hkijena.jipipe.desktop.app.resultanalysis

Constructors in org.hkijena.jipipe.desktop.app.resultanalysis with parameters of type JIPipeProject

Constructor and Description
JIPipeDesktopMergedResultDataSlotTableUI(JIPipeDesktopProjectWorkbench projectWorkbench, JIPipeProject project, Path storagePath, List<JIPipeDataSlot> slots)
JIPipeDesktopResultAlgorithmTree(JIPipeDesktopProjectWorkbench workbenchUI, JIPipeProject project, Path storagePath)
JIPipeDesktopResultDataSlotTableUI(JIPipeDesktopProjectWorkbench projectWorkbench, JIPipeProject project, Path storagePath, JIPipeDataSlot slot)
JIPipeDesktopResultUI(JIPipeDesktopProjectWorkbench workbenchUI, JIPipeProject project, Path storagePath)

Uses of JIPipeProject in org.hkijena.jipipe.desktop.app.settings

Methods in org.hkijena.jipipe.desktop.app.settings that return JIPipeProject

Modifier and Type	Method and Description
JIPipeProject	JIPipeDesktopRunSetListCellRenderer.getProject()

Constructors in org.hkijena.jipipe.desktop.app.settings with parameters of type JIPipeProject

Constructor and Description
JIPipeDesktopProjectSettingsUI(JIPipeProject project, JIPipeDesktopWorkbench workbench) Creates a new instance
JIPipeDesktopRunSetListCellRenderer(JIPipeProject project, JIPipeProjectRunSetsConfiguration runSetsConfiguration)
ProjectDirectoriesSettingsSheetWrapper(JIPipeProject project)
ProjectMetadataSettingsSheetWrapper(JIPipeProject project)
ProjectParametersSettingsSheetWrapper(JIPipeProject project)
ProjectPermissionsSettingsSheetWrapper(JIPipeProject project)

Uses of JIPipeProject in org.hkijena.jipipe.desktop.app.settings.project

Methods in org.hkijena.jipipe.desktop.app.settings.project that return JIPipeProject

Modifier and Type	Method and Description
JIPipeProject	JIPipeDesktopMergedProjectSettings.getProject()
JIPipeProject	JIPipeDesktopProjectOverviewRunManager.getProject()

Constructors in org.hkijena.jipipe.desktop.app.settings.project with parameters of type JIPipeProject

Constructor and Description
JIPipeDesktopMergedProjectSettings(JIPipeProject project)
JIPipeDesktopMergedProjectSettingsUserDirectories(JIPipeProject project)
JIPipeDesktopProjectOverviewRunManager(JIPipeProject project, JIPipeDesktopDockPanel dockPanel, JIPipeDesktopProjectOverviewUI projectOverviewUI, List<JIPipeAlgorithm> nodes, boolean allowChangePanels)

Uses of JIPipeProject in org.hkijena.jipipe.desktop.commons.components

Constructors in org.hkijena.jipipe.desktop.commons.components with parameters of type JIPipeProject

Constructor and Description
JIPipeDesktopProjectOutputTreePanel(JIPipeProject project)

Uses of JIPipeProject in org.hkijena.jipipe.plugins.cellpose

Methods in org.hkijena.jipipe.plugins.cellpose with parameters of type JIPipeProject

Modifier and Type	Method and Description
static PythonEnvironment	CellposePlugin.getCP2Environment(JIPipeProject project, OptionalPythonEnvironment nodeEnvironment)
static PythonEnvironment	CellposePlugin.getCP3Environment(JIPipeProject project, OptionalPythonEnvironment nodeEnvironment)

Uses of JIPipeProject in org.hkijena.jipipe.plugins.expressions

Methods in org.hkijena.jipipe.plugins.expressions with parameters of type JIPipeProject

Modifier and Type	Method and Description
JIPipeExpressionVariablesMap	JIPipeExpressionVariablesMap.putGlobalVariables(JIPipeProject project)

Uses of JIPipeProject in org.hkijena.jipipe.plugins.ijfilaments

Methods in org.hkijena.jipipe.plugins.ijfilaments with parameters of type JIPipeProject

Modifier and Type	Method and Description
static TSOAXEnvironment	FilamentsPlugin.getTSOAXEnvironment(JIPipeProject project, OptionalTSOAXEnvironment nodeEnvironment)

Uses of JIPipeProject in org.hkijena.jipipe.plugins.ijocr

Methods in org.hkijena.jipipe.plugins.ijocr with parameters of type JIPipeProject

Modifier and Type	Method and Description
static TesseractOCREnvironment	OCRPlugin.getTesseractOCREnvironment(JIPipeProject project, OptionalTesseractOCREnvironment nodeEnvironment)

Uses of JIPipeProject in org.hkijena.jipipe.plugins.ilastik

Methods in org.hkijena.jipipe.plugins.ilastik with parameters of type JIPipeProject

Modifier and Type	Method and Description
static IlastikEnvironment	IlastikPlugin.getEnvironment(JIPipeProject project, OptionalIlastikEnvironment nodeEnvironment)

Uses of JIPipeProject in org.hkijena.jipipe.plugins.nodetemplate

Methods in org.hkijena.jipipe.plugins.nodetemplate that return JIPipeProject

Modifier and Type	Method and Description
JIPipeProject	NodeTemplateBox.getProject()

Uses of JIPipeProject in org.hkijena.jipipe.plugins.omero

Methods in org.hkijena.jipipe.plugins.omero with parameters of type JIPipeProject

Modifier and Type	Method and Description
static OMEROCredentialsEnvironment	OMEROPlugin.getEnvironment(JIPipeProject project, OptionalOMEROCredentialsEnvironment nodeEnvironment)

Uses of JIPipeProject in org.hkijena.jipipe.plugins.omnipose

Methods in org.hkijena.jipipe.plugins.omnipose with parameters of type JIPipeProject

Modifier and Type	Method and Description
static PythonEnvironment	OmniposePlugin.getEnvironment(JIPipeProject project, OptionalPythonEnvironment nodeEnvironment)

Uses of JIPipeProject in org.hkijena.jipipe.plugins.parameters.library.graph

Methods in org.hkijena.jipipe.plugins.parameters.library.graph with parameters of type JIPipeProject

Modifier and Type	Method and Description
JIPipeGraphNode	GraphNodeReferenceParameter.resolve(JIPipeProject project)

Uses of JIPipeProject in org.hkijena.jipipe.plugins.pipelinerender

Methods in org.hkijena.jipipe.plugins.pipelinerender that return JIPipeProject

Modifier and Type	Method and Description
JIPipeProject	RenderPipelineRun.getProject()

Constructors in org.hkijena.jipipe.plugins.pipelinerender with parameters of type JIPipeProject

Constructor and Description
RenderPipelineRun(JIPipeProject project, Path outputPath, RenderPipelineRunSettings settings)

Uses of JIPipeProject in org.hkijena.jipipe.plugins.python

Methods in org.hkijena.jipipe.plugins.python with parameters of type JIPipeProject

Modifier and Type	Method and Description
static JIPipePythonAdapterLibraryEnvironment	CorePythonPlugin.getAdapterEnvironment(JIPipeProject project)
static PythonEnvironment	CorePythonPlugin.getEnvironment(JIPipeProject project, OptionalPythonEnvironment nodeEnvironment)

Uses of JIPipeProject in org.hkijena.jipipe.plugins.r

Methods in org.hkijena.jipipe.plugins.r with parameters of type JIPipeProject

Modifier and Type	Method and Description
static REnvironment	RPlugin.getEnvironment(JIPipeProject project, OptionalREnvironment nodeEnvironment)