Uses of Class
org.hkijena.jipipe.api.AddJIPipeCitation

Packages that use AddJIPipeCitation

Package	Description
org.hkijena.jipipe.plugins.ij3d.nodes.binary
org.hkijena.jipipe.plugins.ij3d.nodes.features
org.hkijena.jipipe.plugins.ij3d.nodes.filters
org.hkijena.jipipe.plugins.ij3d.nodes.segmentation
org.hkijena.jipipe.plugins.ijfilaments.nodes.measure
org.hkijena.jipipe.plugins.ijocr.nodes
org.hkijena.jipipe.plugins.ilastik.nodes
org.hkijena.jipipe.plugins.imagej2.datatypes.shapes
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.binary
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.detect
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.features
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.generate
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.labels
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.labels.filter
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.math.distancemap
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.math.local
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.morphology
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.modify
org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold.local
org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.annotate
org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.io
org.hkijena.jipipe.plugins.strings.nodes.json
org.hkijena.jipipe.plugins.strings.nodes.xml
org.hkijena.jipipe.plugins.tables.nodes.statistics

Uses of AddJIPipeCitation in org.hkijena.jipipe.plugins.ij3d.nodes.binary

Classes in org.hkijena.jipipe.plugins.ij3d.nodes.binary with annotations of type AddJIPipeCitation

Modifier and Type	Class and Description
class	ErodedVolumeFraction3DAlgorithm

Uses of AddJIPipeCitation in org.hkijena.jipipe.plugins.ij3d.nodes.features

Classes in org.hkijena.jipipe.plugins.ij3d.nodes.features with annotations of type AddJIPipeCitation

Modifier and Type	Class and Description
class	EdgeFilter3DAlgorithm
class	SymmetryFilter3DAlgorithm

Uses of AddJIPipeCitation in org.hkijena.jipipe.plugins.ij3d.nodes.filters

Classes in org.hkijena.jipipe.plugins.ij3d.nodes.filters with annotations of type AddJIPipeCitation

Modifier and Type	Class and Description
class	Fast3DFiltersAdaptiveAlgorithm
class	Fast3DFiltersCloseAlgorithm
class	Fast3DFiltersLocalMaxAlgorithm
class	Fast3DFiltersMaxAlgorithm
class	Fast3DFiltersMeanAlgorithm
class	Fast3DFiltersMedianAlgorithm
class	Fast3DFiltersMinAlgorithm
class	Fast3DFiltersOpenAlgorithm
class	Fast3DFiltersSobelAlgorithm
class	Fast3DFiltersTopHatAlgorithm
class	Fast3DFiltersVarianceAlgorithm

Uses of AddJIPipeCitation in org.hkijena.jipipe.plugins.ij3d.nodes.segmentation

Classes in org.hkijena.jipipe.plugins.ij3d.nodes.segmentation with annotations of type AddJIPipeCitation

Modifier and Type	Class and Description
class	ConstantSpotSegmentation3DAlgorithm
class	DifferenceSpotSegmentation3DAlgorithm
class	GaussianFitSpotSegmentation3DAlgorithm
class	HysteresisSegmentation3DAlgorithm
class	LocalMeanSpotSegmentation3DAlgorithm
class	NucleiSegmentation3DAlgorithm

Uses of AddJIPipeCitation in org.hkijena.jipipe.plugins.ijfilaments.nodes.measure

Classes in org.hkijena.jipipe.plugins.ijfilaments.nodes.measure with annotations of type AddJIPipeCitation

Modifier and Type	Class and Description
class	MeasureEdgesAlgorithm
class	MeasureFilamentsAlgorithm
class	MeasureVerticesAlgorithm

Uses of AddJIPipeCitation in org.hkijena.jipipe.plugins.ijocr.nodes

Classes in org.hkijena.jipipe.plugins.ijocr.nodes with annotations of type AddJIPipeCitation

Modifier and Type	Class and Description
class	TesseractOCRAlgorithm

Uses of AddJIPipeCitation in org.hkijena.jipipe.plugins.ilastik.nodes

Classes in org.hkijena.jipipe.plugins.ilastik.nodes with annotations of type AddJIPipeCitation

Modifier and Type	Class and Description
class	IlastikAutoContextAlgorithm
class	IlastikObjectClassificationAlgorithm
class	IlastikPixelClassificationAlgorithm
class	IlastikPredictionMapsObjectClassificationAlgorithm
class	IlastikSegmentationImageObjectClassificationAlgorithm

Uses of AddJIPipeCitation in org.hkijena.jipipe.plugins.imagej2.datatypes.shapes

Classes in org.hkijena.jipipe.plugins.imagej2.datatypes.shapes with annotations of type AddJIPipeCitation

Modifier and Type	Class and Description
class	PeriodicLineImageJ2ShapeData

Uses of AddJIPipeCitation in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.binary

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.binary with annotations of type AddJIPipeCitation

Modifier and Type	Class and Description
class	ConnectedComponentsLabeling2DAlgorithm
class	ConnectedComponentsLabeling3DAlgorithm
class	ConvexifyAlgorithm
class	KeepLargestRegionAlgorithm
class	RemoveLargestRegionAlgorithm
class	VolumeOpening2DAlgorithm
class	VolumeOpening3DAlgorithm

Uses of AddJIPipeCitation in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.detect

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.detect with annotations of type AddJIPipeCitation

Modifier and Type	Class and Description
class	FastCircularHoughSegmentation2DAlgorithm Segments using a Hough circle transform This code is based on ...
class	GlobalLinesHoughDetection2DAlgorithm
class	LineSegmentsHoughDetection2DAlgorithm
class	LinesHoughDetection2DAlgorithm

Uses of AddJIPipeCitation in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.features

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.features with annotations of type AddJIPipeCitation

Modifier and Type	Class and Description
class	AlternatingMorphologicalFilters2DAlgorithm
class	MorphologicalFeatureContrast2DAlgorithm
class	MorphologicalTextureContrast2DAlgorithm

Uses of AddJIPipeCitation in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.generate

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.generate with annotations of type AddJIPipeCitation

Modifier and Type	Class and Description
class	GenerateStructureElement2DAlgorithm Wrapper around ImageProcessor
class	GenerateStructureElement3DAlgorithm Wrapper around ImageProcessor

Uses of AddJIPipeCitation in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.labels

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.labels with annotations of type AddJIPipeCitation

Modifier and Type	Class and Description
class	CropLabelsAlgorithm
class	DilateLabelsAlgorithm
class	ExpandLabelsAlgorithm
class	GetLabelBoundariesAlgorithm
class	KeepLargestLabelAlgorithm
class	LabelsToMaskAlgorithm
class	LabelsToRGBAlgorithm
class	LabelsToROIAlgorithm
class	MergeLabelsAlgorithm
class	RemapLabelsAlgorithm
class	ReplaceLabelsAlgorithm

Uses of AddJIPipeCitation in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.labels.filter

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.labels.filter with annotations of type AddJIPipeCitation

Modifier and Type	Class and Description
class	FilterLabelsByExpression2DAlgorithm
class	FilterLabelsByExpression3DAlgorithm
class	FilterLabelsByIdAlgorithm
class	FilterLabelsByMaskAlgorithm
class	FilterLabelsByOverlapAlgorithm
class	RemoveBorderLabelsAlgorithm
class	RemoveLargestLabelAlgorithm

Uses of AddJIPipeCitation in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.math.distancemap

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.math.distancemap with annotations of type AddJIPipeCitation

Modifier and Type	Class and Description
class	ChamferDistanceMap2DAlgorithm
class	ChamferDistanceMap3DAlgorithm
class	GeodesicDistanceMap2DAlgorithm
class	LabelChamferDistanceMap3DAlgorithm

Uses of AddJIPipeCitation in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.math.local

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.math.local with annotations of type AddJIPipeCitation

Modifier and Type	Class and Description
class	ExtendedMaxima2DAlgorithm
class	ExtendedMaxima3DAlgorithm
class	ExtendedMinima2DAlgorithm
class	ExtendedMinima3DAlgorithm
class	ImposeMaxima2DAlgorithm
class	ImposeMaxima3DAlgorithm
class	RegionalMaxima2DAlgorithm
class	RegionalMaxima3DAlgorithm
class	RegionalMinima2DAlgorithm
class	RegionalMinima3DAlgorithm

Uses of AddJIPipeCitation in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.morphology

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.morphology with annotations of type AddJIPipeCitation

Modifier and Type	Class and Description
class	FindHoles2DAlgorithm
class	GrayscaleAttributeFiltering2DAlgorithm
class	GrayscaleAttributeFiltering3DAlgorithm
class	Morphology2DAlgorithm Wrapper around ImageProcessor
class	Morphology3DAlgorithm Wrapper around ImageProcessor

Uses of AddJIPipeCitation in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.modify

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.roi.modify with annotations of type AddJIPipeCitation

Modifier and Type	Class and Description
class	OutlineRoiConcaveHullMoreiraSantosAlgorithm

Uses of AddJIPipeCitation in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold.local

Classes in org.hkijena.jipipe.plugins.imagejalgorithms.nodes.threshold.local with annotations of type AddJIPipeCitation

Modifier and Type	Class and Description
class	ContrastLocalAutoThreshold2DAlgorithm Segmenter node that thresholds via an auto threshold Based on code from fiji.threshold.Auto_Local_Threshold
class	NiblackLocalAutoThreshold2DAlgorithm Segmenter node that thresholds via an auto threshold Based on code from fiji.threshold.Auto_Local_Threshold
class	PhansalkarLocalAutoThreshold2DAlgorithm Segmenter node that thresholds via an auto threshold Based on code from fiji.threshold.Auto_Local_Threshold
class	SauvolaLocalAutoThreshold2DAlgorithm Segmenter node that thresholds via an auto threshold Based on code from fiji.threshold.Auto_Local_Threshold

Uses of AddJIPipeCitation in org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.annotate

Classes in org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.annotate with annotations of type AddJIPipeCitation

Modifier and Type	Class and Description
class	BioFormatsAnnotatorAlgorithm BioFormats importer wrapper

Uses of AddJIPipeCitation in org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.io

Classes in org.hkijena.jipipe.plugins.imagejdatatypes.algorithms.io with annotations of type AddJIPipeCitation

Modifier and Type	Class and Description
class	BioFormatsExporter2Algorithm
class	BioFormatsExporterAlgorithm Deprecated.
class	BioFormatsImporterAlgorithm BioFormats importer wrapper
class	ExportImagePlusAsOMEZARRAlgorithm
class	ImportImagePlusAlgorithm Loads an image data from a file via IJ.openFile()
class	ImportOMEZARRFromURIAsImagePlusAlgorithm
class	ImportOMEZARRFromZipDirectoryAsImagePlusAlgorithm

Uses of AddJIPipeCitation in org.hkijena.jipipe.plugins.strings.nodes.json

Classes in org.hkijena.jipipe.plugins.strings.nodes.json with annotations of type AddJIPipeCitation

Modifier and Type	Class and Description
class	AnnotateWithJsonDataAlgorithm
class	ExtractJsonDataAsTableAlgorithm
class	ExtractTextFromJsonAlgorithm

Uses of AddJIPipeCitation in org.hkijena.jipipe.plugins.strings.nodes.xml

Classes in org.hkijena.jipipe.plugins.strings.nodes.xml with annotations of type AddJIPipeCitation

Modifier and Type	Class and Description
class	AnnotateWithXPathDataAlgorithm
class	ExtractTextFromXMLAlgorithm
class	ExtractXPathDataAsTableAlgorithm

Uses of AddJIPipeCitation in org.hkijena.jipipe.plugins.tables.nodes.statistics

Classes in org.hkijena.jipipe.plugins.tables.nodes.statistics with annotations of type AddJIPipeCitation

Modifier and Type	Class and Description
class	DBSCANClusteringAlgorithm
class	FuzzyKMeansClusteringAlgorithm
class	KMeansClusteringAlgorithm