org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold

Class CustomAutoThreshold2D16Uv2Algorithm

java.lang.Object

org.hkijena.jipipe.api.parameters.AbstractJIPipeParameterCollection

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.CustomAutoThreshold2D16Uv2Algorithm

All Implemented Interfaces:

JIPipeSlotConfiguration.SlotConfigurationChangedEventListener, JIPipeFunctionallyComparable, JIPipeValidatable, JIPipeAdaptiveParametersAlgorithm, JIPipeDataBatchAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection, JIPipeParameterCollection.ParameterChangedEventListener, JIPipeParameterCollection.ParameterStructureChangedEventListener, JIPipeParameterCollection.ParameterUIChangedEventListener

public class CustomAutoThreshold2D16Uv2Algorithm
extends JIPipeIteratingAlgorithm

Thresholding node that thresholds via an auto threshold

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	CustomAutoThreshold2D16Uv2Algorithm.ThresholdParameters
static class	CustomAutoThreshold2D16Uv2Algorithm.VariableSource

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.BaseDirectoryChangedEventEmitter, JIPipeGraphNode.BaseDirectoryChangedEventListener, JIPipeGraphNode.NodeSlotsChangedEvent, JIPipeGraphNode.NodeSlotsChangedEventEmitter, JIPipeGraphNode.NodeSlotsChangedEventListener, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterChangedEventEmitter, JIPipeParameterCollection.ParameterChangedEventListener, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEventEmitter, JIPipeParameterCollection.ParameterStructureChangedEventListener, JIPipeParameterCollection.ParameterUIChangedEvent, JIPipeParameterCollection.ParameterUIChangedEventEmitter, JIPipeParameterCollection.ParameterUIChangedEventListener

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
CustomAutoThreshold2D16Uv2Algorithm(CustomAutoThreshold2D16Uv2Algorithm other) Copies the algorithm
CustomAutoThreshold2D16Uv2Algorithm(JIPipeNodeInfo info)

Method Summary

Modifier and Type	Method and Description
CustomAutoThreshold2D16Uv2Algorithm.ThresholdParameters	getMaxThresholdParameters()
CustomAutoThreshold2D16Uv2Algorithm.ThresholdParameters	getMinThresholdParameters()
ImageROITargetArea	getSourceArea()
JIPipeTextAnnotationMergeMode	getThresholdAnnotationStrategy()
AutoThreshold2DAlgorithm.SliceThresholdMode	getThresholdMode()
boolean	isAccessPixels()
protected void	runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo) Runs code on one data row
void	setAccessPixels(boolean accessPixels)
void	setSourceArea(ImageROITargetArea sourceArea)
void	setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy)
void	setThresholdMode(AutoThreshold2DAlgorithm.SliceThresholdMode thresholdMode)
boolean	supportsParallelization() Indicates to the algorithm base implementation if parallelization is supported.

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

createUIInputSlotIconDescriptionMenuItems, generateDataBatchesDryRun, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getParallelizationBatchSize, isParallelizationEnabled, isParameterUIVisible, isParameterUIVisible, runParameterSet, runPassThrough, setParallelizationEnabled

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, getUIInputSlotIcon, getUIInputSlotIconBaseDimensions, onParameterChanged, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, canPassThrough, functionallyEquals, getThreadPool, isEnabled, isPassThrough, isPostprocessor, isPreprocessor, loadExample, reportValidity, runPassThrough, setEnabled, setPassThrough, setThreadPool

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

archiveTo, canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, emitNodeSlotsChangedEvent, fromJson, fromJsonNode, getAliasIdInParentGraph, getBaseDirectory, getBaseDirectoryChangedEventEmitter, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getCustomName, getDependencies, getDisplayName, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getNodeSlotsChangedEventEmitter, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDirectory, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isUiLocked, isVisibleIn, onDeserialized, onParameterStructureChanged, onParameterUIChanged, onSlotConfigurationChanged, registerSubParameter, renderInputSlots, renderOutputSlots, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, setUiLocked, toggleSlot, toJson, updateGraphNodeSlots

Methods inherited from class org.hkijena.jipipe.api.parameters.AbstractJIPipeParameterCollection

getParameterChangedEventEmitter, getParameterStructureChangedEventEmitter, getParameterUIChangedEventEmitter

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.nodes.JIPipeAdaptiveParametersAlgorithm

installUIOverrideParameterEditor, installUIParameterOptions

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

emitParameterChangedEvent, emitParameterStructureChangedEvent, emitParameterUIChangedEvent, getContextActions, getParameter, getParameterAccess, getParameterChangedEventEmitter, getParameterStructureChangedEventEmitter, getParameterUIChangedEventEmitter, setParameter

Methods inherited from interface org.hkijena.jipipe.api.JIPipeValidatable

generateValidityReport

Constructor Detail

CustomAutoThreshold2D16Uv2Algorithm

public CustomAutoThreshold2D16Uv2Algorithm(JIPipeNodeInfo info)

Parameters:

info - the info

CustomAutoThreshold2D16Uv2Algorithm

public CustomAutoThreshold2D16Uv2Algorithm(CustomAutoThreshold2D16Uv2Algorithm other)

Copies the algorithm

Parameters:

other - the original

Method Detail

supportsParallelization

public boolean supportsParallelization()

Description copied from interface: JIPipeParallelizedAlgorithm

Indicates to the algorithm base implementation if parallelization is supported. Use this function to indicate to the algorithm to conditionally enable/disable parallelization.

Specified by:

supportsParallelization in interface JIPipeParallelizedAlgorithm

Overrides:

supportsParallelization in class JIPipeIteratingAlgorithm

Returns:

If the algorithm supports automated parallelization.

runIteration

protected void runIteration(JIPipeDataBatch dataBatch,
                            JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeIteratingAlgorithm

Runs code on one data row

Specified by:

runIteration in class JIPipeIteratingAlgorithm

Parameters:

dataBatch - The data interface

progressInfo - the progress info from the run

getThresholdAnnotationStrategy

public JIPipeTextAnnotationMergeMode getThresholdAnnotationStrategy()

setThresholdAnnotationStrategy

public void setThresholdAnnotationStrategy(JIPipeTextAnnotationMergeMode thresholdAnnotationStrategy)

getThresholdMode

public AutoThreshold2DAlgorithm.SliceThresholdMode getThresholdMode()

setThresholdMode

public void setThresholdMode(AutoThreshold2DAlgorithm.SliceThresholdMode thresholdMode)

getSourceArea

public ImageROITargetArea getSourceArea()

setSourceArea

public void setSourceArea(ImageROITargetArea sourceArea)

isAccessPixels

public boolean isAccessPixels()

setAccessPixels

public void setAccessPixels(boolean accessPixels)

getMinThresholdParameters

public CustomAutoThreshold2D16Uv2Algorithm.ThresholdParameters getMinThresholdParameters()

getMaxThresholdParameters

public CustomAutoThreshold2D16Uv2Algorithm.ThresholdParameters getMaxThresholdParameters()