Tutorials

Tutorials

Here you can find the list of all tutorials. If you are new, we recommend to begin with the basic tutorial about adding and running nodes.

Recommended tutorial for beginners

Adding and running nodes

Explains how to add new nodes into a project and use them to load an image file. Afterwards, the project is saved.

Grouping nodes (2/2)

Explains how to use filesystem nodes to automatically detect and load all images in a directory.

Grouping nodes (1/2)

Explains how to group a set of nodes into a single group node

Exporting data

Explains how to export data into human- and machine-readable formats

Creating node templates

Node templates are a feature that allows to store the settings and connections of one or multiple nodes into a dedicated list. This can greatly speed up the creation of new pipelines.

Creating and connecting compartments

Explains how to add new nodes via the algorithm finder into a project and use them to import an image file.

Changing the temporary directory

JIPipe stores intermediate results into a temporary directory. If the operating system drive has a low capacity, JIPipe might not be able to allocate the necessary hard-drive space. This tutorial shows how to move the temporary directory to a custom path.

Changing node parameters

Explains how to change the settings of nodes to modify their behavior.

Cellpose training

Explains how to utilize the Cellpose nodes for segmentation and transfer learning

Cellpose segmentation

Explains how to utilize the Cellpose nodes for segmentation