public class BioFormatsImporter extends JIPipeSimpleIteratingAlgorithm
JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.Serializer
JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterUIChangedEvent
SLOT_PARAMETERS
Constructor and Description |
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BioFormatsImporter(BioFormatsImporter other)
Copies the algorithm
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BioFormatsImporter(JIPipeNodeInfo info) |
generateDataBatchesDryRun, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getParallelizationBatchSize, isParallelizationEnabled, isParameterUIVisible, isParameterUIVisible, runParameterSet, runPassThrough, setParallelizationEnabled, supportsParallelization
getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, run
canAutoPassThrough, canPassThrough, functionallyEquals, getThreadPool, isEnabled, isPassThrough, isPostprocessor, isPreprocessor, loadExample, runPassThrough, setEnabled, setPassThrough, setThreadPool
archiveTo, canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, fromJson, fromJsonNode, getAliasIdInParentGraph, getBaseDirectory, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getDependencies, getDisplayName, getEventBus, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDirectory, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isVisibleIn, onDeserialized, onParameterChanged, onParameterStructureChanged, onParameterUIChanged, onSlotConfigurationChanged, registerSubParameter, renderInputSlots, renderOutputSlots, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, toggleSlot, toJson, triggerSlotsChangedEvent, updateGraphNodeSlots
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
generateValidityReport
addParameterChangeListener, addParameterChangeListener, getContextActions, getParameter, getParameterAccess, installUIOverrideParameterEditor, installUIParameterOptions, setParameter, triggerParameterChange, triggerParameterStructureChange, triggerParameterUIChange
public BioFormatsImporter(JIPipeNodeInfo info)
info
- the infopublic BioFormatsImporter(BioFormatsImporter other)
other
- the originalprotected void runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo)
JIPipeSimpleIteratingAlgorithm
runIteration
in class JIPipeSimpleIteratingAlgorithm
dataBatch
- The data interfaceprogressInfo
- the progress info from the runpublic void reportValidity(JIPipeIssueReport report)
JIPipeValidatable
reportValidity
in interface JIPipeValidatable
reportValidity
in class JIPipeSimpleIteratingAlgorithm
report
- the report to be added topublic boolean isAutoScale()
public void setAutoScale(boolean autoScale)
public OMEColorMode getColorMode()
public void setColorMode(OMEColorMode colorMode)
public RectangleList getCropRegions()
public void setCropRegions(RectangleList cropRegions)
public ome.xml.model.enums.DimensionOrder getStackOrder()
public void setStackOrder(ome.xml.model.enums.DimensionOrder stackOrder)
public boolean isSplitChannels()
public void setSplitChannels(boolean splitChannels)
public boolean isSplitFocalPlanes()
public void setSplitFocalPlanes(boolean splitFocalPlanes)
public boolean isSplitTimePoints()
public void setSplitTimePoints(boolean splitTimePoints)
public boolean isSwapDimensions()
public void setSwapDimensions(boolean swapDimensions)
public boolean isConcatenate()
public void setConcatenate(boolean concatenate)
public boolean isCrop()
public void setCrop(boolean crop)
public boolean isStitchTiles()
public void setStitchTiles(boolean stitchTiles)
public OptionalAnnotationNameParameter getTitleAnnotation()
public void setTitleAnnotation(OptionalAnnotationNameParameter titleAnnotation)
public boolean isExtractRois()
public void setExtractRois(boolean extractRois)
public boolean isOpenAllSeries()
public void setOpenAllSeries(boolean openAllSeries)
public IntegerList getSeriesToImport()
public void setSeriesToImport(IntegerList seriesToImport)
public OptionalAnnotationNameParameter getSeriesAnnotation()
public void setSeriesAnnotation(OptionalAnnotationNameParameter seriesAnnotation)
public void setToExample(JIPipeWorkbench parent)
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