org.hkijena.jipipe.extensions.omero.util

Class OMEROUtils

java.lang.Object

org.hkijena.jipipe.extensions.omero.util.OMEROUtils

public class OMEROUtils
extends Object

Constructor Summary

Constructors

Constructor and Description
OMEROUtils()

Method Summary

Modifier and Type	Method and Description
static Map<String,String>	getKeyValuePairAnnotations(MetadataFacility metadata, SecurityContext context, DataObject dataObject)
static Set<String>	getTagAnnotations(MetadataFacility metadata, SecurityContext context, DataObject dataObject)
static List<Pixels>	importImages(ImportLibrary library, OMEROMetadataStoreClient store, ImportConfig config, ImportCandidates candidates) Copy of importCandidates in ImportLibrary that returns the list of uploaded images.
static ResultsTableData	tableFromOMERO(TableData tableData)
static TableData	tableToOMERO(ResultsTableData resultsTableData)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

OMEROUtils

public OMEROUtils()

Method Detail

tableFromOMERO

public static ResultsTableData tableFromOMERO(TableData tableData)

tableToOMERO

public static TableData tableToOMERO(ResultsTableData resultsTableData)

getKeyValuePairAnnotations

public static Map<String,String> getKeyValuePairAnnotations(MetadataFacility metadata,
                                                            SecurityContext context,
                                                            DataObject dataObject)
                                                     throws DSAccessException,
                                                            DSOutOfServiceException

Throws:

DSAccessException

DSOutOfServiceException

getTagAnnotations

public static Set<String> getTagAnnotations(MetadataFacility metadata,
                                            SecurityContext context,
                                            DataObject dataObject)
                                     throws DSAccessException,
                                            DSOutOfServiceException

Throws:

DSAccessException

DSOutOfServiceException

importImages

public static List<Pixels> importImages(ImportLibrary library,
                                        OMEROMetadataStoreClient store,
                                        ImportConfig config,
                                        ImportCandidates candidates)

Copy of importCandidates in ImportLibrary that returns the list of uploaded images. This method also throws all exceptions.

Parameters:

library - the library

store - the store

config - the config

candidates - the candidates

Returns:

the image instance