org.hkijena.jipipe.plugins.imagejalgorithms.utils.turboreg

Class TurboRegPointHandler

java.lang.Object

ij.gui.Roi

org.hkijena.jipipe.plugins.imagejalgorithms.utils.turboreg.TurboRegPointHandler

All Implemented Interfaces:

Serializable, Cloneable, Iterable<Point>

public class TurboRegPointHandler
extends ij.gui.Roi

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
static int	MAGNIFIER The magnifying tool is set in eleventh position to be coherent with ImageJ.
static int	MOVE_CROSS The moving tool is set in second position to be coherent with the PointPicker_ plugin.
static int	NUM_POINTS The number of points we are willing to deal with is at most 4.

Fields inherited from class ij.gui.Roi

ANGLE, asp_bk, aspect, cachedMask, center, clipboard, clipHeight, clipWidth, clipX, clipY, COMPOSITE, constrain, CONSTRUCTING, defaultColor, defaultFillColor, FERET_ARRAY_POINTOFFSET, FERET_ARRAYSIZE, fillColor, flattenScale, FREELINE, FREEROI, HANDLE_SIZE, handleColor, ic, ignoreClipRect, imp, instanceColor, LINE, lineWidth, mag, MOVING, MOVING_HANDLE, nonScalable, NORMAL, NOT_PASTING, oldHeight, oldWidth, oldX, oldY, onePixelWide, OVAL, overlay, pasteMode, POINT, POLYGON, POLYLINE, previousRoi, RECTANGLE, RESIZING, ROIColor, stroke, strokeColor, TRACED_ROI, type, updateFullWindow, wideLine, xMax, yMax

Constructor Summary

Constructors

Constructor and Description
TurboRegPointHandler(double[][] precisionPoint, TurboRegTransformationType transformation) Keep a local copy of the points and of the transformation.
TurboRegPointHandler(ij.ImagePlus imp, TurboRegTransformationType transformation) Keep a local copy of the ImagePlus object.

Method Summary

Modifier and Type	Method and Description
void	draw(Graphics g) Draw the landmarks.
int	findClosest(int x, int y) Set the current point as that which is closest to (x, y).
Point	getPoint() Return the current point as a Point object.
double[][]	getPoints() Return all landmarks as an array double[transformation / 2][2], except for a rigid-body transformation for which the array has size double[3][2].
void	movePoint(int x, int y) Modify the location of the current point.
void	setCurrentPoint(int currentPoint) Set a new current point.
void	setPoints(double[][] precisionPoint) Set new position for all landmarks, without clipping.
void	setTransformation(TurboRegTransformationType transformation) Reset the landmarks to their initial position for the given transformation.

Methods inherited from class ij.gui.Roi

abortModification, abortPaste, addRoiListener, clipRectMargin, clone, contains, containsPoint, convertLineToArea, convertToPolygon, copyAttributes, create, create, drawOverlay, drawPixels, drawPixels, enableSubPixelResolution, endPaste, equals, getAngle, getAngle, getAntiAlias, getBoundingRect, getBounds, getColor, getContainedFloatPoints, getContainedPoints, getContourCentroid, getConvexHull, getCornerDiameter, getCPosition, getCurrentPasteMode, getDebugInfo, getDefaultFillColor, getDefaultGroup, getDefaultHandleSize, getDefaultStrokeWidth, getDrawOffset, getFeretsDiameter, getFeretValues, getFillColor, getFloatAngle, getFloatBounds, getFloatConvexHull, getFloatHeight, getFloatPolygon, getFloatPolygon, getFloatWidth, getGroup, getGroupName, getGroupNames, getHandleSize, getHashCode, getImage, getImageID, getInterpolatedPolygon, getInterpolatedPolygon, getInterpolatedPolygon, getInverse, getLength, getListeners, getMagnification, getMask, getName, getPasteMode, getPolygon, getPosition, getPreviousRoi, getProperties, getProperty, getPropertyCount, getPrototypeOverlay, getRotationCenter, getRoundRectArcSize, getScaledStroke, getScaleStrokeWidth, getState, getStatistics, getStroke, getStrokeColor, getStrokeWidth, getTPosition, getType, getTypeAsString, getXBase, getYBase, getZPosition, grow, handleMouseDown, handleMouseDrag, handleMouseUp, hasHyperStackPosition, isActiveOverlayRoi, isArea, isCursor, isDrawingTool, isHandle, isInteger, isLine, isLineOrPoint, isVisible, iterator, lineCircleIntersection, magnificationForSubPixel, magnificationForSubPixel, mouseDownInHandle, mouseDragged, mouseMoved, mouseReleased, moveHandle, notifyListeners, nudge, nudgeCorner, offScreenX, offScreenXD, offScreenY, offScreenYD, removeRoiListener, resetDefaultHandleSize, saveGroupNames, screenX, screenXD, screenY, screenYD, setAntiAlias, setBounds, setColor, setCornerDiameter, setDefaultColor, setDefaultFillColor, setDefaultGroup, setDefaultStrokeWidth, setDrawOffset, setFillColor, setFlattenScale, setGroup, setGroupName, setGroupNames, setHandleSize, setIgnoreClipRect, setImage, setInstanceColor, setIsCursor, setLineWidth, setLocation, setLocation, setName, setNonScalable, setPasteMode, setPosition, setPosition, setPosition, setPreviousRoi, setProperties, setProperty, setPrototypeOverlay, setRenderingHint, setRotationCenter, setRoundRectArcSize, setStroke, setStrokeColor, setStrokeWidth, setStrokeWidth, setUnscalableStrokeWidth, showStatus, size, startPaste, subPixelResolution, temporarilyHide, toFloat, toInt, toInt, toIntR, toString, translate, update, updateClipRect, updateWideLine, useLineSubpixelConvention, xor

Methods inherited from class java.lang.Object

finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.lang.Iterable

forEach, spliterator

Field Detail

MAGNIFIER

public static final int MAGNIFIER

The magnifying tool is set in eleventh position to be coherent with ImageJ.

See Also:

Constant Field Values

MOVE_CROSS

public static final int MOVE_CROSS

The moving tool is set in second position to be coherent with the PointPicker_ plugin.

See Also:

Constant Field Values

NUM_POINTS

public static final int NUM_POINTS

The number of points we are willing to deal with is at most 4.

See Also:

Constant Field Values

Constructor Detail

TurboRegPointHandler

public TurboRegPointHandler(double[][] precisionPoint,
                            TurboRegTransformationType transformation)

Keep a local copy of the points and of the transformation.

TurboRegPointHandler

public TurboRegPointHandler(ij.ImagePlus imp,
                            TurboRegTransformationType transformation)

Keep a local copy of the ImagePlus object. Set the landmarks to their initial position for the given transformation.

Parameters:

imp - ImagePlus object.

transformation - Transformation code.

Method Detail

draw

public void draw(Graphics g)

Draw the landmarks. Outline the current point if the window has focus.

Overrides:

draw in class ij.gui.Roi

Parameters:

g - Graphics environment.

findClosest

public int findClosest(int x,
                       int y)

Set the current point as that which is closest to (x, y).

Parameters:

x - Horizontal coordinate in canvas units.

y - Vertical coordinate in canvas units.

getPoint

public Point getPoint()

Return the current point as a Point object.

getPoints

public double[][] getPoints()

Return all landmarks as an array double[transformation / 2][2], except for a rigid-body transformation for which the array has size double[3][2].

setPoints

public void setPoints(double[][] precisionPoint)

Set new position for all landmarks, without clipping.

Parameters:

precisionPoint - New coordinates in canvas units.

movePoint

public void movePoint(int x,
                      int y)

Modify the location of the current point. Clip the admissible range to the image size.

Parameters:

x - Desired new horizontal coordinate in canvas units.

y - Desired new vertical coordinate in canvas units.

setCurrentPoint

public void setCurrentPoint(int currentPoint)

Set a new current point.

Parameters:

currentPoint - New current point index.

setTransformation

public void setTransformation(TurboRegTransformationType transformation)

Reset the landmarks to their initial position for the given transformation.

Parameters:

transformation - Transformation code.