org.hkijena.jipipe.plugins.imagejalgorithms.utils

Class SimpleRegistrationUtils

java.lang.Object

org.hkijena.jipipe.plugins.imagejalgorithms.utils.SimpleRegistrationUtils

public class SimpleRegistrationUtils
extends Object

Port of Register_Virtual_Stack_MT

Method Summary

Modifier and Type

Method and Description

static void

register(ij.ImagePlus imp1, ij.ImagePlus imp2, ij.ImagePlus imp1mask, ij.ImagePlus imp2mask, mpicbg.trakem2.transform.CoordinateTransform t, Rectangle commonBounds, List<Rectangle> bounds, SimpleImageRegistrationParameters parameters, SIFTParameters siftParameters, bunwarpj.Param elasticParams, JIPipeProgressInfo progressInfo) Register two images with corresponding masks and following the features and registration models.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

register

public static void register(ij.ImagePlus imp1,
                            ij.ImagePlus imp2,
                            ij.ImagePlus imp1mask,
                            ij.ImagePlus imp2mask,
                            mpicbg.trakem2.transform.CoordinateTransform t,
                            Rectangle commonBounds,
                            List<Rectangle> bounds,
                            SimpleImageRegistrationParameters parameters,
                            SIFTParameters siftParameters,
                            bunwarpj.Param elasticParams,
                            JIPipeProgressInfo progressInfo)

Register two images with corresponding masks and following the features and registration models.

Parameters:

imp1 - target image

imp2 - source image (input and output)

imp1mask - target mask

imp2mask - source mask (input and output)

t - coordinate transform

commonBounds - current common bounds of the registration space

bounds - list of bounds for the already registered images

parameters - the parameters