public class ExtendedObject3DVoxels
extends mcib3d.geom.Object3DVoxels
Object3DVoxels that comes with some additional loading methodsareaContactUnit, areaContactVoxels, areaNbVoxels, bx, by, bz, comment, compare, contours, currentQuantifImage, cx, cy, cz, eigen, feret, feret1, feret2, integratedDensity, kdtreeContours, labelImage, meanDensity, MEASURE_AREA_PIX, MEASURE_AREA_UNIT, MEASURE_COMPACTNESS_UNITS, MEASURE_COMPACTNESS_VOXELS, MEASURE_DC_AVG, MEASURE_DC_SD, MEASURE_INTENSITY_AVG, MEASURE_INTENSITY_MAX, MEASURE_INTENSITY_MEDIAN, MEASURE_INTENSITY_MIN, MEASURE_INTENSITY_SD, MEASURE_MAIN_ELONGATION, MEASURE_NONE, MEASURE_VOLUME_PIX, MEASURE_VOLUME_UNIT, miniLabelImage, multiThread, name, pixmax, pixmin, resXY, resZ, s002, s003, s004, s011, s012, s013, s020, s021, s022, s030, s031, s040, s101, s102, s103, s110, s111, s112, s120, s121, s130, s200, s201, s202, s210, s211, s220, s300, s301, s310, s400, sigma, type, units, value, verbose, volume, xmax, xmin, ymax, ymin, zmax, zmin| Constructor and Description |
|---|
ExtendedObject3DVoxels() |
ExtendedObject3DVoxels(mcib3d.image3d.ImageHandler ima) |
ExtendedObject3DVoxels(mcib3d.image3d.ImageHandler imaSeg,
mcib3d.image3d.ImageHandler imaRaw) |
ExtendedObject3DVoxels(mcib3d.image3d.ImageHandler ima,
int val) |
ExtendedObject3DVoxels(ij.ImagePlus plus,
int val) |
ExtendedObject3DVoxels(ij.ImageStack stack,
int val) |
ExtendedObject3DVoxels(int val) |
ExtendedObject3DVoxels(List<mcib3d.geom.Voxel3D> al) |
ExtendedObject3DVoxels(mcib3d.geom.Object3D other) |
ExtendedObject3DVoxels(mcib3d.geom.Object3DVoxels other) |
| Modifier and Type | Method and Description |
|---|---|
void |
loadObjectFromStream(InputStream stream,
String name)
Loads the voxels from a stream
|
void |
saveObjectToStream(OutputStream stream)
Saves the voxels to a stream
|
addVoxels, addVoxelsIntersection, addVoxelsIntersection, addVoxelsUnion, addVoxelsUnion, computeBounding, computeCenter, computeContours, computeMassCenter, computeMassCenter, computeMoments2, computeMoments3, computeMoments4, computeMomentsInertia, copyObject, createEllipsoidPixel, createRoi, createSphereUnit, dilate, draw, draw, draw, draw, draw, draw, draw, drawContours, drawContoursXY, getAreaPixelsCorrected, getColoc, getColocVoxels, getCompactnessCorrected, getConnexComponents, getDiscreteCompactness, getFirstVoxel, getInterior3DFill, getPixelMax, getPixMedianValue, getRandomVoxel, getSphericityCorrected, getValueArray, getVoxelInsideBoundingBox, getVoxels, hasOneVoxelColoc, hasOneVoxelValueRange, isConnex, listValues, listValues, listVoxels, listVoxels, listVoxels, loadObject, pcColoc2, removeVoxels, rotate, saveObject, saveObjectZip, setContours, setShowStatus, setVoxels, substractObject, translate, translateangle, b_closed, b_open, centerInside, compareTo, computeContours, computeEigen, computeMeshSurface, createIntersectionImage, createIntersectionImage, createSegImage, createSegImage, createSegImageMini2D, disjointBox, distBorderPixel, distBorderUnit, distBorderUnit, distCenter2DUnit, distCenterBorderUnit, distCenterPixel, distCenterUnit, distHausdorffUnit, distPixelBorder, distPixelBorderUnit, distPixelBorderUnit, distPixelCenter, distPixelCenter, draw, drawAt, drawLink, edgeContact, edgeImage, getAreaPixels, getAreaUnit, getArrayValues, getBoundingBox, getBoundingOriented, getCalibration, getCenterAsArray, getCenterAsPoint, getCenterAsVector, getCenterAsVectorUnit, getCenterUnit, getCenterX, getCenterY, getCenterZ, getClosedObject, getComment, getCompactness, getCompactness, getContours, getConvexObject, getConvexObject, getConvexPolygonRoi, getConvexSurface, getDilatedObject, getDistCenterMax, getDistCenterMaxPixel, getDistCenterMean, getDistCenterMeanPixel, getDistCenterMin, getDistCenterMinPixel, getDistCenterSigma, getDistCenterSigmaPixel, getEllipsoid, getErodedObject, getFeret, getFeretVoxel1, getFeretVoxel2, getGeometricInvariants, getHomogeneousInvariants, getIntegratedDensity, getIntegratedDensity, getIntersectionBox, getIntersectionObject, getLabelImage, getLayerEVFObject, getLayerEVFObject, getLayerObject, getMainAxis, getMainElongation, getMassCenterX, getMassCenterY, getMassCenterZ, getMatrixAxes, getMaxLabelImage, getMeanPixValueAroundBarycenter, getMeasure, getMedianElongation, getMoments3D, getMomentsRaw2, getMomentsRaw3, getMomentsRaw4, getName, getNbMoments3D, getNumbering, getObject3DSurface, getObject3DVoxels, getOpenedObject, getPixCenterValue, getPixelBorder, getPixMaxValue, getPixMeanValue, getPixMeanValueContour, getPixMinValue, getPixModeNonZero, getPixModeValue, getPixStdDevValue, getQuantilePixValue, getRadiusMoments, getRatioBox, getRatioEllipsoid, getResXY, getResZ, getSphericity, getSphericity, getType, getUnits, getValue, getValueAxis, getVectorAxis, getVolumeBoundingBoxOrientedPixel, getVolumeBoundingBoxPixel, getVolumeEllipseUnit, getVolumePixels, getVolumeUnit, getXmax, getXmin, getYmax, getYmin, getZmax, getZmin, includedInZonesNone, includedInZonesOneMore, includedInZonesOneOnly, includes, includesBox, includesMarkersNone, includesMarkersOneMore, includesMarkersOneOnly, init, inside, inside, insideAll, insideBounding, insideBounding, insideBounding, insideOne, isContour, isEmpty, listVoxels, listVoxelsByDistance, loadInfo, overlapBox, pcColoc, pcColocSum, pointPixelBorder, radiusCenter, radiusCenter, radiusCenter, radiusPixel, regular, resetQuantifImage, saveInfo, setCalibration, setCalibration, setComment, setLabelImage, setName, setNewCenter, setNewCenter, setNewCenter, setResXY, setResZ, setType, setUnits, setValue, surfaceContact, toString, touchBorders, touchBorders, vectorBorderBorder, vectorBorderBorder, vectorCenterBorder, vectorPixelBorder, vectorPixelBorder, vectorPixelBorder, vectorPixelUnitBorder, vectorPixelUnitBorder, vectorPixelUnitBorder, vectorPixelUnitBorder, VoxelsBorderBorderpublic ExtendedObject3DVoxels()
public ExtendedObject3DVoxels(int val)
public ExtendedObject3DVoxels(mcib3d.image3d.ImageHandler ima,
int val)
public ExtendedObject3DVoxels(mcib3d.image3d.ImageHandler ima)
public ExtendedObject3DVoxels(mcib3d.image3d.ImageHandler imaSeg,
mcib3d.image3d.ImageHandler imaRaw)
public ExtendedObject3DVoxels(ij.ImagePlus plus,
int val)
public ExtendedObject3DVoxels(ij.ImageStack stack,
int val)
public ExtendedObject3DVoxels(List<mcib3d.geom.Voxel3D> al)
public ExtendedObject3DVoxels(mcib3d.geom.Object3DVoxels other)
public ExtendedObject3DVoxels(mcib3d.geom.Object3D other)
public void saveObjectToStream(OutputStream stream)
stream - the streampublic void loadObjectFromStream(InputStream stream, String name)
stream - the input streamname - the nameCopyright © 2020–2025 Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute (HKI). All rights reserved.