Uses of Class
org.hkijena.jipipe.api.environments.JIPipeEnvironment

Packages that use JIPipeEnvironment

Package	Description
org.hkijena.jipipe
org.hkijena.jipipe.api.environments
org.hkijena.jipipe.api.nodes
org.hkijena.jipipe.api.registries
org.hkijena.jipipe.desktop.api.environments
org.hkijena.jipipe.plugins.cellpose.algorithms
org.hkijena.jipipe.plugins.cellpose.legacy.algorithms
org.hkijena.jipipe.plugins.ijfilaments.environments
org.hkijena.jipipe.plugins.ijfilaments.nodes.generate
org.hkijena.jipipe.plugins.ijfilaments.settings
org.hkijena.jipipe.plugins.ilastik.environments
org.hkijena.jipipe.plugins.ilastik.nodes
org.hkijena.jipipe.plugins.ilastik.settings
org.hkijena.jipipe.plugins.omero
org.hkijena.jipipe.plugins.omero.nodes.annotate
org.hkijena.jipipe.plugins.omero.nodes.datasources
org.hkijena.jipipe.plugins.omero.nodes.download
org.hkijena.jipipe.plugins.omero.nodes.manage
org.hkijena.jipipe.plugins.omero.nodes.navigate
org.hkijena.jipipe.plugins.omero.nodes.upload
org.hkijena.jipipe.plugins.omnipose.algorithms
org.hkijena.jipipe.plugins.omnipose.legacy.algorithms
org.hkijena.jipipe.plugins.processes
org.hkijena.jipipe.plugins.python
org.hkijena.jipipe.plugins.python.adapter
org.hkijena.jipipe.plugins.python.algorithms.python
org.hkijena.jipipe.plugins.r
org.hkijena.jipipe.plugins.r.algorithms
org.hkijena.jipipe.plugins.settings

Uses of JIPipeEnvironment in org.hkijena.jipipe

Methods in org.hkijena.jipipe with type parameters of type JIPipeEnvironment

Modifier and Type	Method and Description
<T extends JIPipeEnvironment,U extends ListParameter<T>> void	JIPipeDefaultJavaPlugin.registerEnvironment(Class<T> environmentClass, Class<U> listClass, ExternalEnvironmentSettings settings, String id, String name, String description, Icon icon) Registers a new environment type.

Method parameters in org.hkijena.jipipe with type arguments of type JIPipeEnvironment

Modifier and Type	Method and Description
void	JIPipeDefaultJavaPlugin.registerEnvironmentInstaller(Class<? extends JIPipeEnvironment> environmentClass, Class<? extends JIPipeExternalEnvironmentInstaller> installerClass, Icon icon) Registers an installer for a given environment

Uses of JIPipeEnvironment in org.hkijena.jipipe.api.environments

Subclasses of JIPipeEnvironment in org.hkijena.jipipe.api.environments

Modifier and Type	Class and Description
class	JIPipeArtifactEnvironment An environment that can be filled with an artifact
class	JIPipeArtifactProcessEnvironment An artifact environment that points at an executable

Methods in org.hkijena.jipipe.api.environments that return JIPipeEnvironment

Modifier and Type	Method and Description
abstract JIPipeEnvironment	JIPipeExternalEnvironmentInstaller.getInstalledEnvironment() Returns the final environment after installation

Methods in org.hkijena.jipipe.api.environments that return types with arguments of type JIPipeEnvironment

Modifier and Type	Method and Description
List<JIPipeEnvironment>	ExternalEnvironmentSettings.getPresetsListInterface(Class<?> environmentClass) Returns the presets.

Method parameters in org.hkijena.jipipe.api.environments with type arguments of type JIPipeEnvironment

Modifier and Type	Method and Description
void	ExternalEnvironmentSettings.setPresetsListInterface(List<JIPipeEnvironment> presets, Class<?> environmentClass) Sets the presets This is an interface class for easy access

Constructors in org.hkijena.jipipe.api.environments with parameters of type JIPipeEnvironment

Constructor and Description
JIPipeEnvironment(JIPipeEnvironment other)

Uses of JIPipeEnvironment in org.hkijena.jipipe.api.nodes

Method parameters in org.hkijena.jipipe.api.nodes with type arguments of type JIPipeEnvironment

Modifier and Type	Method and Description
void	JIPipeGraphNode.getEnvironmentDependencies(List<JIPipeEnvironment> target) Gathers all known external environments

Uses of JIPipeEnvironment in org.hkijena.jipipe.api.registries

Methods in org.hkijena.jipipe.api.registries that return types with arguments of type JIPipeEnvironment

Modifier and Type	Method and Description
List<JIPipeEnvironment>	JIPipeExternalEnvironmentRegistry.getPresets(Class<?> environmentClass) Gets the presets of an environment

Methods in org.hkijena.jipipe.api.registries with parameters of type JIPipeEnvironment

Modifier and Type	Method and Description
void	JIPipeExternalEnvironmentRegistry.addPreset(Class<?> environmentClass, JIPipeEnvironment preset) Adds a new preset into the storage of the environment class

Method parameters in org.hkijena.jipipe.api.registries with type arguments of type JIPipeEnvironment

Modifier and Type	Method and Description
List<JIPipeExternalEnvironmentRegistry.InstallerEntry>	JIPipeExternalEnvironmentRegistry.getInstallers(Class<? extends JIPipeEnvironment> environmentClass) Returns a sorted list of installer items for the environment
void	JIPipeExternalEnvironmentRegistry.registerEnvironment(Class<? extends JIPipeEnvironment> environmentClass, ExternalEnvironmentSettings settings) Registers an environment and its corresponding settings
void	JIPipeExternalEnvironmentRegistry.registerInstaller(Class<? extends JIPipeEnvironment> environmentClass, Class<? extends JIPipeExternalEnvironmentInstaller> installerClass, Icon icon) Registers an installer

Uses of JIPipeEnvironment in org.hkijena.jipipe.desktop.api.environments

Classes in org.hkijena.jipipe.desktop.api.environments with type parameters of type JIPipeEnvironment

Modifier and Type	Class and Description
class	JIPipeDesktopEasyInstallExternalEnvironmentInstaller<T extends JIPipeEnvironment> Environment installer that extracts a premade package of the environment and generates the appropriate environment Supported are .tar.gz and .zip archives that should contain the hierarchy of files as expected in the environment installation directory.

Methods in org.hkijena.jipipe.desktop.api.environments that return JIPipeEnvironment

Modifier and Type	Method and Description
JIPipeEnvironment	JIPipeDesktopEasyInstallExternalEnvironmentInstaller.getInstalledEnvironment()

Uses of JIPipeEnvironment in org.hkijena.jipipe.plugins.cellpose.algorithms

Method parameters in org.hkijena.jipipe.plugins.cellpose.algorithms with type arguments of type JIPipeEnvironment

Modifier and Type	Method and Description
void	Cellpose2InferenceAlgorithm.getEnvironmentDependencies(List<JIPipeEnvironment> target)
void	Cellpose2TrainingAlgorithm.getEnvironmentDependencies(List<JIPipeEnvironment> target)

Uses of JIPipeEnvironment in org.hkijena.jipipe.plugins.cellpose.legacy.algorithms

Method parameters in org.hkijena.jipipe.plugins.cellpose.legacy.algorithms with type arguments of type JIPipeEnvironment

Modifier and Type	Method and Description
void	LegacyCellpose2TrainingAlgorithm.getEnvironmentDependencies(List<JIPipeEnvironment> target) Deprecated.
void	Cellpose1InferenceAlgorithm.getEnvironmentDependencies(List<JIPipeEnvironment> target) Deprecated.
void	Cellpose1TrainingAlgorithm.getEnvironmentDependencies(List<JIPipeEnvironment> target) Deprecated.
void	LegacyCellpose2InferenceAlgorithm.getEnvironmentDependencies(List<JIPipeEnvironment> target) Deprecated.

Uses of JIPipeEnvironment in org.hkijena.jipipe.plugins.ijfilaments.environments

Subclasses of JIPipeEnvironment in org.hkijena.jipipe.plugins.ijfilaments.environments

Modifier and Type	Class and Description
class	TSOAXEnvironment Parameter that describes a TSOAX environment

Uses of JIPipeEnvironment in org.hkijena.jipipe.plugins.ijfilaments.nodes.generate

Method parameters in org.hkijena.jipipe.plugins.ijfilaments.nodes.generate with type arguments of type JIPipeEnvironment

Modifier and Type	Method and Description
void	TSOAXAlgorithm.getEnvironmentDependencies(List<JIPipeEnvironment> target)

Uses of JIPipeEnvironment in org.hkijena.jipipe.plugins.ijfilaments.settings

Methods in org.hkijena.jipipe.plugins.ijfilaments.settings that return types with arguments of type JIPipeEnvironment

Modifier and Type	Method and Description
List<JIPipeEnvironment>	TSOAXApplicationSettings.getPresetsListInterface(Class<?> environmentClass)

Method parameters in org.hkijena.jipipe.plugins.ijfilaments.settings with type arguments of type JIPipeEnvironment

Modifier and Type	Method and Description
void	TSOAXApplicationSettings.setPresetsListInterface(List<JIPipeEnvironment> presets, Class<?> environmentClass)

Uses of JIPipeEnvironment in org.hkijena.jipipe.plugins.ilastik.environments

Subclasses of JIPipeEnvironment in org.hkijena.jipipe.plugins.ilastik.environments

Modifier and Type	Class and Description
class	IlastikEnvironment Parameter that describes a Python environment

Uses of JIPipeEnvironment in org.hkijena.jipipe.plugins.ilastik.nodes

Method parameters in org.hkijena.jipipe.plugins.ilastik.nodes with type arguments of type JIPipeEnvironment

Modifier and Type	Method and Description
void	IlastikAutoContextAlgorithm.getEnvironmentDependencies(List<JIPipeEnvironment> target)
void	IlastikPredictionMapsObjectClassificationAlgorithm.getEnvironmentDependencies(List<JIPipeEnvironment> target)
void	IlastikObjectClassificationAlgorithm.getEnvironmentDependencies(List<JIPipeEnvironment> target)
void	IlastikPixelClassificationAlgorithm.getEnvironmentDependencies(List<JIPipeEnvironment> target)
void	IlastikSegmentationImageObjectClassificationAlgorithm.getEnvironmentDependencies(List<JIPipeEnvironment> target)

Uses of JIPipeEnvironment in org.hkijena.jipipe.plugins.ilastik.settings

Methods in org.hkijena.jipipe.plugins.ilastik.settings that return types with arguments of type JIPipeEnvironment

Modifier and Type	Method and Description
List<JIPipeEnvironment>	IlastikPluginApplicationSettings.getPresetsListInterface(Class<?> environmentClass)

Method parameters in org.hkijena.jipipe.plugins.ilastik.settings with type arguments of type JIPipeEnvironment

Modifier and Type	Method and Description
void	IlastikPluginApplicationSettings.setPresetsListInterface(List<JIPipeEnvironment> presets, Class<?> environmentClass)

Uses of JIPipeEnvironment in org.hkijena.jipipe.plugins.omero

Subclasses of JIPipeEnvironment in org.hkijena.jipipe.plugins.omero

Modifier and Type	Class and Description
class	OMEROCredentialsEnvironment

Methods in org.hkijena.jipipe.plugins.omero that return types with arguments of type JIPipeEnvironment

Modifier and Type	Method and Description
List<JIPipeEnvironment>	OMEROPluginApplicationSettings.getPresetsListInterface(Class<?> environmentClass)

Method parameters in org.hkijena.jipipe.plugins.omero with type arguments of type JIPipeEnvironment

Modifier and Type	Method and Description
void	OMEROPluginApplicationSettings.setPresetsListInterface(List<JIPipeEnvironment> presets, Class<?> environmentClass)

Uses of JIPipeEnvironment in org.hkijena.jipipe.plugins.omero.nodes.annotate

Method parameters in org.hkijena.jipipe.plugins.omero.nodes.annotate with type arguments of type JIPipeEnvironment

Modifier and Type	Method and Description
void	AnnotateOMEROImageReferenceAlgorithm.getEnvironmentDependencies(List<JIPipeEnvironment> target)
void	AnnotateOMEROProjectReferenceAlgorithm.getEnvironmentDependencies(List<JIPipeEnvironment> target)
void	AnnotateOMERODatasetReferenceAlgorithm.getEnvironmentDependencies(List<JIPipeEnvironment> target)

Uses of JIPipeEnvironment in org.hkijena.jipipe.plugins.omero.nodes.datasources

Method parameters in org.hkijena.jipipe.plugins.omero.nodes.datasources with type arguments of type JIPipeEnvironment

Modifier and Type	Method and Description
void	OMEROImageReferenceDataSource.getEnvironmentDependencies(List<JIPipeEnvironment> target)
void	OMERODatasetReferenceDataSource.getEnvironmentDependencies(List<JIPipeEnvironment> target)
void	OMEROProjectReferenceDataSource.getEnvironmentDependencies(List<JIPipeEnvironment> target)

Uses of JIPipeEnvironment in org.hkijena.jipipe.plugins.omero.nodes.download

Method parameters in org.hkijena.jipipe.plugins.omero.nodes.download with type arguments of type JIPipeEnvironment

Modifier and Type	Method and Description
void	DownloadOMEROImageAlgorithm.getEnvironmentDependencies(List<JIPipeEnvironment> target)
void	DownloadOMEROTableAlgorithm.getEnvironmentDependencies(List<JIPipeEnvironment> target)

Uses of JIPipeEnvironment in org.hkijena.jipipe.plugins.omero.nodes.manage

Method parameters in org.hkijena.jipipe.plugins.omero.nodes.manage with type arguments of type JIPipeEnvironment

Modifier and Type	Method and Description
void	OMEROCreateDatasetAlgorithm.getEnvironmentDependencies(List<JIPipeEnvironment> target)

Uses of JIPipeEnvironment in org.hkijena.jipipe.plugins.omero.nodes.navigate

Method parameters in org.hkijena.jipipe.plugins.omero.nodes.navigate with type arguments of type JIPipeEnvironment

Modifier and Type	Method and Description
void	OMEROListGroupsAlgorithm.getEnvironmentDependencies(List<JIPipeEnvironment> target)
void	OMEROListDatasetsAlgorithm.getEnvironmentDependencies(List<JIPipeEnvironment> target)
void	OMEROListProjectsAlgorithm.getEnvironmentDependencies(List<JIPipeEnvironment> target)
void	OMEROListImagesAlgorithm.getEnvironmentDependencies(List<JIPipeEnvironment> target)

Uses of JIPipeEnvironment in org.hkijena.jipipe.plugins.omero.nodes.upload

Method parameters in org.hkijena.jipipe.plugins.omero.nodes.upload with type arguments of type JIPipeEnvironment

Modifier and Type	Method and Description
void	UploadOMEROImageAlgorithm.getEnvironmentDependencies(List<JIPipeEnvironment> target)
void	UploadOMEROTableAlgorithm.getEnvironmentDependencies(List<JIPipeEnvironment> target)

Uses of JIPipeEnvironment in org.hkijena.jipipe.plugins.omnipose.algorithms

Method parameters in org.hkijena.jipipe.plugins.omnipose.algorithms with type arguments of type JIPipeEnvironment

Modifier and Type	Method and Description
void	Omnipose0TrainingAlgorithm.getEnvironmentDependencies(List<JIPipeEnvironment> target)
void	Omnipose0InferenceAlgorithm.getEnvironmentDependencies(List<JIPipeEnvironment> target)

Uses of JIPipeEnvironment in org.hkijena.jipipe.plugins.omnipose.legacy.algorithms

Method parameters in org.hkijena.jipipe.plugins.omnipose.legacy.algorithms with type arguments of type JIPipeEnvironment

Modifier and Type	Method and Description
void	LegacyOmnipose0TrainingAlgorithm.getEnvironmentDependencies(List<JIPipeEnvironment> target) Deprecated.
void	LegacyOmnipose0InferenceAlgorithm.getEnvironmentDependencies(List<JIPipeEnvironment> target) Deprecated.

Uses of JIPipeEnvironment in org.hkijena.jipipe.plugins.processes

Subclasses of JIPipeEnvironment in org.hkijena.jipipe.plugins.processes

Modifier and Type	Class and Description
class	ProcessEnvironment

Methods in org.hkijena.jipipe.plugins.processes that return types with arguments of type JIPipeEnvironment

Modifier and Type	Method and Description
List<JIPipeEnvironment>	JIPipeProcessesPluginApplicationSettings.getPresetsListInterface(Class<?> environmentClass)

Method parameters in org.hkijena.jipipe.plugins.processes with type arguments of type JIPipeEnvironment

Modifier and Type	Method and Description
void	JIPipeProcessesPluginApplicationSettings.setPresetsListInterface(List<JIPipeEnvironment> presets, Class<?> environmentClass)

Uses of JIPipeEnvironment in org.hkijena.jipipe.plugins.python

Subclasses of JIPipeEnvironment in org.hkijena.jipipe.plugins.python

Modifier and Type	Class and Description
class	PythonEnvironment Parameter that describes a Python environment
class	PythonPackageLibraryEnvironment An environment-like type that points to a package

Methods in org.hkijena.jipipe.plugins.python that return types with arguments of type JIPipeEnvironment

Modifier and Type	Method and Description
List<JIPipeEnvironment>	PythonPluginApplicationSettings.getPresetsListInterface(Class<?> environmentClass)

Method parameters in org.hkijena.jipipe.plugins.python with type arguments of type JIPipeEnvironment

Modifier and Type	Method and Description
void	PythonPluginApplicationSettings.setPresetsListInterface(List<JIPipeEnvironment> presets, Class<?> environmentClass)

Uses of JIPipeEnvironment in org.hkijena.jipipe.plugins.python.adapter

Subclasses of JIPipeEnvironment in org.hkijena.jipipe.plugins.python.adapter

Modifier and Type	Class and Description
class	JIPipePythonAdapterLibraryEnvironment Environment that supplies the JIPipe Python adapter library

Methods in org.hkijena.jipipe.plugins.python.adapter that return types with arguments of type JIPipeEnvironment

Modifier and Type	Method and Description
List<JIPipeEnvironment>	JIPipePythonPluginAdapterApplicationSettings.getPresetsListInterface(Class<?> environmentClass)

Method parameters in org.hkijena.jipipe.plugins.python.adapter with type arguments of type JIPipeEnvironment

Modifier and Type	Method and Description
void	JIPipePythonPluginAdapterApplicationSettings.setPresetsListInterface(List<JIPipeEnvironment> presets, Class<?> environmentClass)

Uses of JIPipeEnvironment in org.hkijena.jipipe.plugins.python.algorithms.python

Method parameters in org.hkijena.jipipe.plugins.python.algorithms.python with type arguments of type JIPipeEnvironment

Modifier and Type	Method and Description
void	MergingPythonScriptAlgorithm.getEnvironmentDependencies(List<JIPipeEnvironment> target)
void	IteratingPythonScriptAlgorithm.getEnvironmentDependencies(List<JIPipeEnvironment> target)
void	PythonScriptAlgorithm.getEnvironmentDependencies(List<JIPipeEnvironment> target)

Uses of JIPipeEnvironment in org.hkijena.jipipe.plugins.r

Subclasses of JIPipeEnvironment in org.hkijena.jipipe.plugins.r

Modifier and Type	Class and Description
class	REnvironment

Methods in org.hkijena.jipipe.plugins.r that return types with arguments of type JIPipeEnvironment

Modifier and Type	Method and Description
List<JIPipeEnvironment>	RPluginApplicationSettings.getPresetsListInterface(Class<?> environmentClass)

Method parameters in org.hkijena.jipipe.plugins.r with type arguments of type JIPipeEnvironment

Modifier and Type	Method and Description
void	RPluginApplicationSettings.setPresetsListInterface(List<JIPipeEnvironment> presets, Class<?> environmentClass)

Uses of JIPipeEnvironment in org.hkijena.jipipe.plugins.r.algorithms

Method parameters in org.hkijena.jipipe.plugins.r.algorithms with type arguments of type JIPipeEnvironment

Modifier and Type	Method and Description
void	ImportRDatasetAlgorithm.getEnvironmentDependencies(List<JIPipeEnvironment> target)
void	IteratingRScriptAlgorithm.getEnvironmentDependencies(List<JIPipeEnvironment> target)
void	MergingRScriptAlgorithm.getEnvironmentDependencies(List<JIPipeEnvironment> target)

Uses of JIPipeEnvironment in org.hkijena.jipipe.plugins.settings

Subclasses of JIPipeEnvironment in org.hkijena.jipipe.plugins.settings

Modifier and Type	Class and Description
static class	JIPipeDownloadsApplicationSettings.DownloadEnvironment