org.hkijena.jipipe.extensions.ijfilaments.nodes.generate

Class SkeletonToSimplifiedFilamentsFijiAlgorithm

java.lang.Object

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

org.hkijena.jipipe.extensions.ijfilaments.nodes.generate.SkeletonToSimplifiedFilamentsFijiAlgorithm

All Implemented Interfaces:

JIPipeFunctionallyComparable, JIPipeValidatable, JIPipeAdaptiveParametersAlgorithm, JIPipeDataBatchAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection

public class SkeletonToSimplifiedFilamentsFijiAlgorithm
extends JIPipeIteratingAlgorithm

Nested Class Summary

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterUIChangedEvent

Field Summary

Fields

Modifier and Type	Field and Description
static JIPipeDataSlotInfo	REFERENCE_INPUT_SLOT
static JIPipeDataSlotInfo	ROI_INPUT_SLOT

Fields inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
SkeletonToSimplifiedFilamentsFijiAlgorithm(JIPipeNodeInfo info)
SkeletonToSimplifiedFilamentsFijiAlgorithm(SkeletonToSimplifiedFilamentsFijiAlgorithm other)

Method Summary

Modifier and Type	Method and Description
AnalyzeSkeleton2D3DAlgorithm.CycleRemovalMethod	getPruneCyclesMethod()
AnalyzeSkeleton2D3DAlgorithm.EndRemovalMethod	getPruneEndsMethod()
protected void	runIteration(JIPipeDataBatch dataBatch, JIPipeProgressInfo progressInfo) Runs code on one data row
void	setPruneCyclesMethod(AnalyzeSkeleton2D3DAlgorithm.CycleRemovalMethod pruneCyclesMethod)
void	setPruneEndsMethod(AnalyzeSkeleton2D3DAlgorithm.EndRemovalMethod pruneEndsMethod)

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

createUIInputSlotIconDescriptionMenuItems, generateDataBatchesDryRun, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getParallelizationBatchSize, isParallelizationEnabled, isParameterUIVisible, isParameterUIVisible, runParameterSet, runPassThrough, setParallelizationEnabled, supportsParallelization

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, getUIInputSlotIcon, getUIInputSlotIconBaseDimensions, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, canPassThrough, functionallyEquals, getThreadPool, isEnabled, isPassThrough, isPostprocessor, isPreprocessor, loadExample, reportValidity, runPassThrough, setEnabled, setPassThrough, setThreadPool

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

archiveTo, canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, fromJson, fromJsonNode, getAliasIdInParentGraph, getBaseDirectory, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getDependencies, getDisplayName, getEventBus, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDirectory, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isVisibleIn, onDeserialized, onParameterChanged, onParameterStructureChanged, onParameterUIChanged, onSlotConfigurationChanged, registerSubParameter, renderInputSlots, renderOutputSlots, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, toggleSlot, toJson, triggerSlotsChangedEvent, updateGraphNodeSlots

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

addParameterChangeListener, addParameterChangeListener, getContextActions, getParameter, getParameterAccess, installUIOverrideParameterEditor, installUIParameterOptions, setParameter, triggerParameterChange, triggerParameterStructureChange, triggerParameterUIChange

Field Detail

ROI_INPUT_SLOT

public static final JIPipeDataSlotInfo ROI_INPUT_SLOT

REFERENCE_INPUT_SLOT

public static final JIPipeDataSlotInfo REFERENCE_INPUT_SLOT

Constructor Detail

SkeletonToSimplifiedFilamentsFijiAlgorithm

public SkeletonToSimplifiedFilamentsFijiAlgorithm(JIPipeNodeInfo info)

SkeletonToSimplifiedFilamentsFijiAlgorithm

public SkeletonToSimplifiedFilamentsFijiAlgorithm(SkeletonToSimplifiedFilamentsFijiAlgorithm other)

Method Detail

runIteration

protected void runIteration(JIPipeDataBatch dataBatch,
                            JIPipeProgressInfo progressInfo)

Description copied from class: JIPipeIteratingAlgorithm

Runs code on one data row

Specified by:

runIteration in class JIPipeIteratingAlgorithm

Parameters:

dataBatch - The data interface

progressInfo - the progress info from the run

getPruneCyclesMethod

public AnalyzeSkeleton2D3DAlgorithm.CycleRemovalMethod getPruneCyclesMethod()

setPruneCyclesMethod

public void setPruneCyclesMethod(AnalyzeSkeleton2D3DAlgorithm.CycleRemovalMethod pruneCyclesMethod)

getPruneEndsMethod

public AnalyzeSkeleton2D3DAlgorithm.EndRemovalMethod getPruneEndsMethod()

setPruneEndsMethod

public void setPruneEndsMethod(AnalyzeSkeleton2D3DAlgorithm.EndRemovalMethod pruneEndsMethod)