org.hkijena.jipipe.extensions.ij3d.nodes.segmentation

Class ConstantSpotSegmentation3DAlgorithm

java.lang.Object

org.hkijena.jipipe.api.nodes.JIPipeGraphNode

org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

org.hkijena.jipipe.extensions.ij3d.nodes.segmentation.SpotSegmentation3DAlgorithm

org.hkijena.jipipe.extensions.ij3d.nodes.segmentation.ConstantSpotSegmentation3DAlgorithm

All Implemented Interfaces:

JIPipeFunctionallyComparable, JIPipeValidatable, JIPipeAdaptiveParametersAlgorithm, JIPipeDataBatchAlgorithm, JIPipeParallelizedAlgorithm, JIPipeParameterCollection

public class ConstantSpotSegmentation3DAlgorithm
extends SpotSegmentation3DAlgorithm

Nested Class Summary

Nested classes/interfaces inherited from class org.hkijena.jipipe.extensions.ij3d.nodes.segmentation.SpotSegmentation3DAlgorithm

SpotSegmentation3DAlgorithm.SpotSegmentationMethod, SpotSegmentation3DAlgorithm.SpotSegmentationSettings

Nested classes/interfaces inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

JIPipeGraphNode.BaseDirectoryChangedEvent, JIPipeGraphNode.Serializer

Nested classes/interfaces inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

JIPipeParameterCollection.ParameterChangedEvent, JIPipeParameterCollection.ParameterStructureChangedEvent, JIPipeParameterCollection.ParameterUIChangedEvent

Field Summary

Fields inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

SLOT_PARAMETERS

Constructor Summary

Constructors

Constructor and Description
ConstantSpotSegmentation3DAlgorithm(ConstantSpotSegmentation3DAlgorithm other)
ConstantSpotSegmentation3DAlgorithm(JIPipeNodeInfo info)

Method Summary

Modifier and Type	Method and Description
protected mcib3d.image3d.segment.LocalThresholder	createThresholder()
int	getLocalBackground()
void	setLocalBackground(int localBackground)

Methods inherited from class org.hkijena.jipipe.extensions.ij3d.nodes.segmentation.SpotSegmentation3DAlgorithm

getMaxVolumePixels, getMinVolumePixels, getSeedSegmentationSettings, getSeedsThreshold, getSpotSegmentationSettings, isEnableWatershed, isOutput32bit, runIteration, setEnableWatershed, setMaxVolumePixels, setMinVolumePixels, setOutput32bit, setSeedsThreshold

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeIteratingAlgorithm

createUIInputSlotIconDescriptionMenuItems, generateDataBatchesDryRun, getAdaptiveParameterSettings, getDataBatchGenerationSettings, getGenerationSettingsInterface, getParallelizationBatchSize, isParallelizationEnabled, isParameterUIVisible, isParameterUIVisible, runParameterSet, runPassThrough, setParallelizationEnabled, supportsParallelization

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeParameterSlotAlgorithm

getDataInputSlotCount, getDataInputSlots, getFirstInputSlot, getNonParameterInputSlots, getParameterSlot, getParameterSlotAlgorithmSettings, getUIInputSlotIcon, getUIInputSlotIconBaseDimensions, run

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm

canAutoPassThrough, canPassThrough, functionallyEquals, getThreadPool, isEnabled, isPassThrough, isPostprocessor, isPreprocessor, loadExample, reportValidity, runPassThrough, setEnabled, setPassThrough, setThreadPool

Methods inherited from class org.hkijena.jipipe.api.nodes.JIPipeGraphNode

archiveTo, canUserDelete, clearLocations, clearSlotData, copySlotConfiguration, duplicate, fromJson, fromJsonNode, getAliasIdInParentGraph, getBaseDirectory, getCategory, getCompartmentDisplayName, getCompartmentUUIDInGraphAsString, getCompartmentUUIDInParentGraph, getCustomDescription, getDependencies, getDisplayName, getEventBus, getFirstOutputSlot, getInfo, getInputSlot, getInputSlotMap, getInputSlotOrder, getInputSlots, getInputSlotsWithRole, getInternalStoragePath, getLastInputSlot, getLastOutputSlot, getLocations, getLocationWithin, getName, getNewScratch, getOpenInputSlots, getOutputSlot, getOutputSlotMap, getOutputSlots, getOutputSlotsWithRole, getParentGraph, getProjectCompartment, getProjectDirectory, getScratchBaseDirectory, getSlotConfiguration, getStoragePath, getUUIDInParentGraph, hasInputSlot, hasOutputSlot, isBookmarked, isVisibleIn, onDeserialized, onParameterChanged, onParameterStructureChanged, onParameterUIChanged, onSlotConfigurationChanged, registerSubParameter, renderInputSlots, renderOutputSlots, setBaseDirectory, setBookmarked, setCustomDescription, setCustomName, setInfo, setInternalStoragePath, setLocations, setLocationWithin, setLocationWithin, setParentGraph, setProjectDirectory, setScratchBaseDirectory, setSlotConfiguration, setStoragePath, toggleSlot, toJson, triggerSlotsChangedEvent, updateGraphNodeSlots

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.hkijena.jipipe.api.JIPipeValidatable

generateValidityReport

Methods inherited from interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection

addParameterChangeListener, addParameterChangeListener, getContextActions, getParameter, getParameterAccess, installUIOverrideParameterEditor, installUIParameterOptions, setParameter, triggerParameterChange, triggerParameterStructureChange, triggerParameterUIChange

Constructor Detail

ConstantSpotSegmentation3DAlgorithm

public ConstantSpotSegmentation3DAlgorithm(JIPipeNodeInfo info)

ConstantSpotSegmentation3DAlgorithm

public ConstantSpotSegmentation3DAlgorithm(ConstantSpotSegmentation3DAlgorithm other)

Method Detail

getLocalBackground

public int getLocalBackground()

setLocalBackground

public void setLocalBackground(int localBackground)

createThresholder

protected mcib3d.image3d.segment.LocalThresholder createThresholder()

Specified by:

createThresholder in class SpotSegmentation3DAlgorithm