org.hkijena.jipipe.extensions.imageviewer.plugins.roimanager

Class ROIManagerPlugin

java.lang.Object

org.hkijena.jipipe.extensions.imageviewer.plugins.ImageViewerPanelPlugin

org.hkijena.jipipe.extensions.imageviewer.plugins.roimanager.ROIManagerPlugin

All Implemented Interfaces:

JIPipeWorkbenchAccess

public class ROIManagerPlugin
extends ImageViewerPanelPlugin

Constructor Summary

Constructors

Constructor and Description
ROIManagerPlugin(ImageViewerPanel viewerPanel)

Method Summary

Modifier and Type	Method and Description
void	addSelectionContextPanel(ROIManagerPluginSelectionContextPanel panel)
void	clearROIs(boolean deferUploadSlice)
void	createPalettePanel(FormPanel formPanel) Called when the form panel should be recreated
ij.process.ImageProcessor	draw(int c, int z, int t, ij.process.ImageProcessor processor) Draws the image in the processor
void	exportROIsToManager()
void	exportROIsToManager(ROIListData rois)
String	getCategory() The tool panel category where this tool is shown
Icon	getCategoryIcon() The icon for the category if a new one must be created
RoiDrawer	getRoiDrawer()
JList<Roi>	getRoiListControl()
ROIListData	getRois()
ROIListData	getSelectedROIOrAll(String title, String message)
List<ROIManagerPluginSelectionContextPanel>	getSelectionContextPanels()
void	importROIs(ROIListData rois, boolean deferUploadSlice)
void	importROIsFromManager(boolean deferUploadSlice)
boolean	isFilterListHideInvisible()
boolean	isFilterListOnlySelected()
void	onImageChanged() Called when the current image is changed
void	onSliceChanged(boolean deferUploadSlice) Called when the current slice is changed
void	postprocessDraw(Graphics2D graphics2D, Rectangle renderArea, ImageSliceIndex sliceIndex) Called after the image has been drawn after the image has been drawn
void	postprocessDrawForExport(BufferedImage image, ImageSliceIndex sliceIndex, double magnification) Called while exporting the image slice.
void	removeSelectedROIs(boolean deferUploadSlice)
void	removeSelectionContextPanel(ROIManagerPluginSelectionContextPanel panel)
void	setFilterListHideInvisible(boolean filterListHideInvisible)
void	setFilterListOnlySelected(boolean filterListOnlySelected)
void	setRois(ROIListData rois, boolean deferUploadSlice)
void	setSelectedROI(Collection<Roi> select, boolean force)
void	updateListModel()
void	updateListModel(boolean deferUploadSlice, Collection<Roi> excludeFromFilter)

Methods inherited from class org.hkijena.jipipe.extensions.imageviewer.plugins.ImageViewerPanelPlugin

beforeDraw, getCurrentImage, getCurrentSlice, getCurrentSlicePosition, getViewerPanel, getWorkbench, uploadSliceToCanvas

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ROIManagerPlugin

public ROIManagerPlugin(ImageViewerPanel viewerPanel)

Method Detail

onImageChanged

public void onImageChanged()

Description copied from class: ImageViewerPanelPlugin

Called when the current image is changed

Overrides:

onImageChanged in class ImageViewerPanelPlugin

createPalettePanel

public void createPalettePanel(FormPanel formPanel)

Description copied from class: ImageViewerPanelPlugin

Called when the form panel should be recreated

Overrides:

createPalettePanel in class ImageViewerPanelPlugin

Parameters:

formPanel - the form panel

getSelectedROIOrAll

public ROIListData getSelectedROIOrAll(String title,
                                       String message)

getSelectionContextPanels

public List<ROIManagerPluginSelectionContextPanel> getSelectionContextPanels()

addSelectionContextPanel

public void addSelectionContextPanel(ROIManagerPluginSelectionContextPanel panel)

removeSelectionContextPanel

public void removeSelectionContextPanel(ROIManagerPluginSelectionContextPanel panel)

draw

public ij.process.ImageProcessor draw(int c,
                                      int z,
                                      int t,
                                      ij.process.ImageProcessor processor)

Description copied from class: ImageViewerPanelPlugin

Draws the image in the processor

Overrides:

draw in class ImageViewerPanelPlugin

Parameters:

c - c position

z - z position

t - t position

processor - the processor

Returns:

the modified processor

postprocessDraw

public void postprocessDraw(Graphics2D graphics2D,
                            Rectangle renderArea,
                            ImageSliceIndex sliceIndex)

Description copied from class: ImageViewerPanelPlugin

Called after the image has been drawn after the image has been drawn

Overrides:

postprocessDraw in class ImageViewerPanelPlugin

Parameters:

graphics2D - the graphics

renderArea - the render area

sliceIndex - the index of the slice

getRoiDrawer

public RoiDrawer getRoiDrawer()

postprocessDrawForExport

public void postprocessDrawForExport(BufferedImage image,
                                     ImageSliceIndex sliceIndex,
                                     double magnification)

Description copied from class: ImageViewerPanelPlugin

Called while exporting the image slice. Use this to export items handled by postprocessDraw

Overrides:

postprocessDrawForExport in class ImageViewerPanelPlugin

Parameters:

image - the image

sliceIndex - the slice

magnification - the magnification

onSliceChanged

public void onSliceChanged(boolean deferUploadSlice)

Description copied from class: ImageViewerPanelPlugin

Called when the current slice is changed

Overrides:

onSliceChanged in class ImageViewerPanelPlugin

Parameters:

deferUploadSlice - if true, uploading the slice to the canvas should be deferred

getCategory

public String getCategory()

Description copied from class: ImageViewerPanelPlugin

The tool panel category where this tool is shown

Specified by:

getCategory in class ImageViewerPanelPlugin

Returns:

the category

getCategoryIcon

public Icon getCategoryIcon()

Description copied from class: ImageViewerPanelPlugin

The icon for the category if a new one must be created

Specified by:

getCategoryIcon in class ImageViewerPanelPlugin

Returns:

the icon

importROIs

public void importROIs(ROIListData rois,
                       boolean deferUploadSlice)

removeSelectedROIs

public void removeSelectedROIs(boolean deferUploadSlice)

clearROIs

public void clearROIs(boolean deferUploadSlice)

getRois

public ROIListData getRois()

setRois

public void setRois(ROIListData rois,
                    boolean deferUploadSlice)

exportROIsToManager

public void exportROIsToManager()

exportROIsToManager

public void exportROIsToManager(ROIListData rois)

importROIsFromManager

public void importROIsFromManager(boolean deferUploadSlice)

isFilterListHideInvisible

public boolean isFilterListHideInvisible()

setFilterListHideInvisible

public void setFilterListHideInvisible(boolean filterListHideInvisible)

isFilterListOnlySelected

public boolean isFilterListOnlySelected()

setFilterListOnlySelected

public void setFilterListOnlySelected(boolean filterListOnlySelected)

updateListModel

public void updateListModel()

updateListModel

public void updateListModel(boolean deferUploadSlice,
                            Collection<Roi> excludeFromFilter)

getRoiListControl

public JList<Roi> getRoiListControl()

setSelectedROI

public void setSelectedROI(Collection<Roi> select,
                           boolean force)