org.hkijena.jipipe.extensions.ijtrackmate.display.tracks

Class TracksManagerPlugin

java.lang.Object

org.hkijena.jipipe.extensions.imageviewer.plugins.ImageViewerPanelPlugin

org.hkijena.jipipe.extensions.ijtrackmate.display.tracks.TracksManagerPlugin

All Implemented Interfaces:

JIPipeWorkbenchAccess

public class TracksManagerPlugin
extends ImageViewerPanelPlugin

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	TracksManagerPlugin.SelectionContextPanel
static class	TracksManagerPlugin.SelectionInfoContextPanel

Constructor Summary

Constructors

Constructor and Description
TracksManagerPlugin(ImageViewerPanel viewerPanel)

Method Summary

Modifier and Type	Method and Description
void	addSelectionContextPanel(TracksManagerPlugin.SelectionContextPanel panel)
void	createPalettePanel(FormPanel formPanel) Called when the form panel should be recreated
String	getCategory() The tool panel category where this tool is shown
Icon	getCategoryIcon() The icon for the category if a new one must be created
TrackCollectionData	getSelectedTracksOrAll(String title, String message)
List<TracksManagerPlugin.SelectionContextPanel>	getSelectionContextPanels()
TrackDrawer	getTrackDrawer()
TrackCollectionData	getTracksCollection()
JList<Integer>	getTracksListControl()
void	onSliceChanged(boolean deferUploadSlice) Called when the current slice is changed
void	postprocessDraw(Graphics2D graphics2D, Rectangle renderArea, ImageSliceIndex sliceIndex) Called after the image has been drawn after the image has been drawn
void	postprocessDrawForExport(BufferedImage image, ImageSliceIndex sliceIndex, double magnification) Called while exporting the image slice.
void	removeSelectedTracks(boolean deferUploadSlice)
void	removeSelectionContextPanel(TracksManagerPlugin.SelectionContextPanel panel)
void	setTrackCollection(TrackCollectionData tracksCollection, JIPipeDataTableDataSource dataSource, boolean deferUploadSlice)

Methods inherited from class org.hkijena.jipipe.extensions.imageviewer.plugins.ImageViewerPanelPlugin

beforeDraw, draw, getCurrentImage, getCurrentSlice, getCurrentSlicePosition, getViewerPanel, getWorkbench, onImageChanged, uploadSliceToCanvas

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TracksManagerPlugin

public TracksManagerPlugin(ImageViewerPanel viewerPanel)

Method Detail

createPalettePanel

public void createPalettePanel(FormPanel formPanel)

Description copied from class: ImageViewerPanelPlugin

Called when the form panel should be recreated

Overrides:

createPalettePanel in class ImageViewerPanelPlugin

Parameters:

formPanel - the form panel

getSelectedTracksOrAll

public TrackCollectionData getSelectedTracksOrAll(String title,
                                                  String message)

getSelectionContextPanels

public List<TracksManagerPlugin.SelectionContextPanel> getSelectionContextPanels()

addSelectionContextPanel

public void addSelectionContextPanel(TracksManagerPlugin.SelectionContextPanel panel)

removeSelectionContextPanel

public void removeSelectionContextPanel(TracksManagerPlugin.SelectionContextPanel panel)

getTrackDrawer

public TrackDrawer getTrackDrawer()

postprocessDraw

public void postprocessDraw(Graphics2D graphics2D,
                            Rectangle renderArea,
                            ImageSliceIndex sliceIndex)

Description copied from class: ImageViewerPanelPlugin

Called after the image has been drawn after the image has been drawn

Overrides:

postprocessDraw in class ImageViewerPanelPlugin

Parameters:

graphics2D - the graphics

renderArea - the render area

sliceIndex - the index of the slice

postprocessDrawForExport

public void postprocessDrawForExport(BufferedImage image,
                                     ImageSliceIndex sliceIndex,
                                     double magnification)

Description copied from class: ImageViewerPanelPlugin

Called while exporting the image slice. Use this to export items handled by postprocessDraw

Overrides:

postprocessDrawForExport in class ImageViewerPanelPlugin

Parameters:

image - the image

sliceIndex - the slice

magnification - the magnification

onSliceChanged

public void onSliceChanged(boolean deferUploadSlice)

Description copied from class: ImageViewerPanelPlugin

Called when the current slice is changed

Overrides:

onSliceChanged in class ImageViewerPanelPlugin

Parameters:

deferUploadSlice - if true, uploading the slice to the canvas should be deferred

getCategory

public String getCategory()

Description copied from class: ImageViewerPanelPlugin

The tool panel category where this tool is shown

Specified by:

getCategory in class ImageViewerPanelPlugin

Returns:

the category

getCategoryIcon

public Icon getCategoryIcon()

Description copied from class: ImageViewerPanelPlugin

The icon for the category if a new one must be created

Specified by:

getCategoryIcon in class ImageViewerPanelPlugin

Returns:

the icon

setTrackCollection

public void setTrackCollection(TrackCollectionData tracksCollection,
                               JIPipeDataTableDataSource dataSource,
                               boolean deferUploadSlice)

removeSelectedTracks

public void removeSelectedTracks(boolean deferUploadSlice)

getTracksCollection

public TrackCollectionData getTracksCollection()

getTracksListControl

public JList<Integer> getTracksListControl()