org.hkijena.jipipe.extensions.ijtrackmate.display.spots

Class SpotsManagerPlugin

java.lang.Object

org.hkijena.jipipe.extensions.imageviewer.plugins.ImageViewerPanelPlugin

org.hkijena.jipipe.extensions.ijtrackmate.display.spots.SpotsManagerPlugin

All Implemented Interfaces:

JIPipeWorkbenchAccess

public class SpotsManagerPlugin
extends ImageViewerPanelPlugin

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	SpotsManagerPlugin.SelectionContextPanel
static class	SpotsManagerPlugin.SelectionInfoContextPanel

Constructor Summary

Constructors

Constructor and Description
SpotsManagerPlugin(ImageViewerPanel viewerPanel)

Method Summary

Modifier and Type	Method and Description
void	addSelectionContextPanel(SpotsManagerPlugin.SelectionContextPanel panel)
void	createPalettePanel(FormPanel formPanel) Called when the form panel should be recreated
String	getCategory() The tool panel category where this tool is shown
Icon	getCategoryIcon() The icon for the category if a new one must be created
SpotsCollectionData	getSelectedSpotsOrAll(String title, String message)
List<SpotsManagerPlugin.SelectionContextPanel>	getSelectionContextPanels()
SpotDrawer	getSpotDrawer()
SpotsCollectionData	getSpotsCollection()
JList<Spot>	getSpotsListControl()
void	onSliceChanged(boolean deferUploadSlice) Called when the current slice is changed
void	postprocessDraw(Graphics2D graphics2D, Rectangle renderArea, ImageSliceIndex sliceIndex) Called after the image has been drawn after the image has been drawn
void	postprocessDrawForExport(BufferedImage image, ImageSliceIndex sliceIndex, double magnification) Called while exporting the image slice.
void	removeSelectedSpots(boolean deferUploadSlice)
void	removeSelectionContextPanel(SpotsManagerPlugin.SelectionContextPanel panel)
void	setSpotCollection(SpotsCollectionData spots, boolean deferUploadSlice)

Methods inherited from class org.hkijena.jipipe.extensions.imageviewer.plugins.ImageViewerPanelPlugin

beforeDraw, draw, getCurrentImage, getCurrentSlice, getCurrentSlicePosition, getViewerPanel, getWorkbench, onImageChanged, uploadSliceToCanvas

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SpotsManagerPlugin

public SpotsManagerPlugin(ImageViewerPanel viewerPanel)

Method Detail

getSelectedSpotsOrAll

public SpotsCollectionData getSelectedSpotsOrAll(String title,
                                                 String message)

getSelectionContextPanels

public List<SpotsManagerPlugin.SelectionContextPanel> getSelectionContextPanels()

addSelectionContextPanel

public void addSelectionContextPanel(SpotsManagerPlugin.SelectionContextPanel panel)

removeSelectionContextPanel

public void removeSelectionContextPanel(SpotsManagerPlugin.SelectionContextPanel panel)

getSpotDrawer

public SpotDrawer getSpotDrawer()

postprocessDraw

public void postprocessDraw(Graphics2D graphics2D,
                            Rectangle renderArea,
                            ImageSliceIndex sliceIndex)

Description copied from class: ImageViewerPanelPlugin

Called after the image has been drawn after the image has been drawn

Overrides:

postprocessDraw in class ImageViewerPanelPlugin

Parameters:

graphics2D - the graphics

renderArea - the render area

sliceIndex - the index of the slice

postprocessDrawForExport

public void postprocessDrawForExport(BufferedImage image,
                                     ImageSliceIndex sliceIndex,
                                     double magnification)

Description copied from class: ImageViewerPanelPlugin

Called while exporting the image slice. Use this to export items handled by postprocessDraw

Overrides:

postprocessDrawForExport in class ImageViewerPanelPlugin

Parameters:

image - the image

sliceIndex - the slice

magnification - the magnification

onSliceChanged

public void onSliceChanged(boolean deferUploadSlice)

Description copied from class: ImageViewerPanelPlugin

Called when the current slice is changed

Overrides:

onSliceChanged in class ImageViewerPanelPlugin

Parameters:

deferUploadSlice - if true, uploading the slice to the canvas should be deferred

getCategory

public String getCategory()

Description copied from class: ImageViewerPanelPlugin

The tool panel category where this tool is shown

Specified by:

getCategory in class ImageViewerPanelPlugin

Returns:

the category

getCategoryIcon

public Icon getCategoryIcon()

Description copied from class: ImageViewerPanelPlugin

The icon for the category if a new one must be created

Specified by:

getCategoryIcon in class ImageViewerPanelPlugin

Returns:

the icon

createPalettePanel

public void createPalettePanel(FormPanel formPanel)

Description copied from class: ImageViewerPanelPlugin

Called when the form panel should be recreated

Overrides:

createPalettePanel in class ImageViewerPanelPlugin

Parameters:

formPanel - the form panel

setSpotCollection

public void setSpotCollection(SpotsCollectionData spots,
                              boolean deferUploadSlice)

removeSelectedSpots

public void removeSelectedSpots(boolean deferUploadSlice)

getSpotsCollection

public SpotsCollectionData getSpotsCollection()

getSpotsListControl

public JList<Spot> getSpotsListControl()