Modifier and Type | Class and Description |
---|---|
class |
ConvertToAnnotationTable
Removes a specified annotation
|
Modifier and Type | Class and Description |
---|---|
class |
MultiTemplateMatchingAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
MacroWrapperAlgorithm
An algorithm that wraps around an ImageJ macro
|
Modifier and Type | Class and Description |
---|---|
class |
AnalyzeSkeleton2D3DAlgorithm |
class |
FindParticles2D
Converts a mask to ROI and ROI measurements
|
class |
ImageStatisticsAlgorithm
Wrapper around
RoiManager |
class |
ImageStatisticsExpressionAlgorithm
Wrapper around
RoiManager |
Modifier and Type | Class and Description |
---|---|
class |
RollingBallBackgroundEstimator2DAlgorithm
Wrapper around
RankFilters |
Modifier and Type | Class and Description |
---|---|
class |
BinarizeAlgorithm |
class |
ConnectedComponentsLabeling2DAlgorithm |
class |
ConnectedComponentsLabeling3DAlgorithm |
class |
ConvexifyAlgorithm |
class |
DistanceTransformWatershed2DAlgorithm
Wrapper around
EDM |
class |
KeepLargestRegionAlgorithm |
class |
RemoveLargestRegionAlgorithm |
class |
UltimateErodedPoints2DAlgorithm
Wrapper around
EDM |
class |
VolumeOpening2DAlgorithm |
class |
VolumeOpening3DAlgorithm |
class |
Voronoi2DAlgorithm
Wrapper around
EDM |
Modifier and Type | Class and Description |
---|---|
class |
BoxFilter2DAlgorithm
Wrapper around
ImageProcessor |
class |
BoxFilter3DAlgorithm
Wrapper around
GaussianBlur |
class |
GaussianBlur2DAlgorithm
Wrapper around
GaussianBlur |
class |
GaussianBlur3DAlgorithm
Wrapper around
GaussianBlur |
class |
MedianBlurFilter2DAlgorithm
Wrapper around
RankFilters |
class |
MedianBlurFilter3DAlgorithm
Wrapper around
GaussianBlur |
class |
MedianBlurRGB2DAlgorithm
Wrapper around
ImageProcessor |
Modifier and Type | Class and Description |
---|---|
class |
DrawScaleBarAlgorithm |
class |
SetPhysicalDimensionsAlgorithm |
class |
SetPhysicalDimensionsByAnnotationsAlgorithm |
class |
SetPhysicalDimensionsByExpressionsAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
Coloc2Node |
Modifier and Type | Class and Description |
---|---|
class |
ArrangeChannelsAlgorithm
Wrapper around
ChannelArranger |
class |
CombineChannelsToRGBAlgorithm |
class |
InvertColorsAlgorithm
Wrapper around
ImageProcessor |
class |
MergeChannelsAlgorithm
Wrapper around
ImageProcessor |
class |
NewSplitChannelsAlgorithm
Wrapper around
ChannelSplitter |
class |
OverlayImagesAlgorithm
Deprecated.
Use
BlendImagesAlgorithm instead |
class |
RenderImageToRGBAlgorithm |
class |
SetToColorAlgorithm |
class |
SetToValueAlgorithm |
class |
SplitChannelsAlgorithm
Deprecated.
|
class |
SplitRGBChannelsAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
CLAHEContrastEnhancer
Applies CLAHE image enhancing
|
class |
HistogramContrastEnhancerAlgorithm
This class is based on
ContrastEnhancer
This class is not very portable, so I adapted the code here |
Modifier and Type | Class and Description |
---|---|
class |
ConvertImageTo16BitAlgorithm |
class |
ConvertImageTo32BitAlgorithm |
class |
ConvertImageTo8BitAlgorithm |
class |
ConvertImageToHSBAlgorithm |
class |
ConvertImageToLABAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
ConvolveByImage2DAlgorithm
Wrapper around
Convolver |
class |
ConvolveByParameter2DAlgorithm
Wrapper around
Convolver |
Modifier and Type | Class and Description |
---|---|
class |
ImageStackFromFolder
Loads an image data from a file via IJ.openFile()
|
class |
OMEImageFromImagePlus |
Modifier and Type | Class and Description |
---|---|
class |
CreateStackAlgorithm |
class |
ExpressionSlicerAlgorithm |
class |
HyperstackSlicerAlgorithm |
class |
InputImagesToMontage |
class |
MontageToStackAlgorithm
Implementation of
MontageMaker |
class |
NewZProjectorAlgorithm
Wrapper around
ZProjector |
class |
ReorderDimensionsAlgorithm
Algorithm that reorders Hyperstack dimensions
|
class |
ResliceAlgorithm |
class |
SplitByDimensionAlgorithm |
class |
StackCombinerAlgorithm |
class |
StackInverterAlgorithm
Wrapper around
ImageProcessor |
class |
StackSplitterAlgorithm
Wrapper around
ChannelArranger |
class |
StackTo2DAlgorithm
Wrapper around
ImageProcessor |
class |
StackToDimensionMergerAlgorithm
Wrapper around
ImageProcessor |
class |
StackToMontageAlgorithm
Implementation of
MontageMaker |
class |
ZProjectorAlgorithm
Wrapper around
ZProjector |
Modifier and Type | Class and Description |
---|---|
class |
SobelEdgeDetectorAlgorithm
Wrapper around
ImageProcessor |
Modifier and Type | Class and Description |
---|---|
class |
DirectionalFilter2DAlgorithm |
class |
FrangiVesselnessFeatures
Applies CLAHE image enhancing
|
class |
LocalMaxima2DAlgorithm
Wrapper around
MaximumFinder |
Modifier and Type | Class and Description |
---|---|
class |
FFT2DForwardTransform
Applies a FFT forward transformation
|
class |
FFT2DInverseTransform
Applies a FFT forward transformation
|
class |
FFT2DSwapQuadrants
Applies a FFT forward transformation
|
Modifier and Type | Class and Description |
---|---|
class |
ExportImage2Algorithm |
class |
ExportImageAlgorithm |
class |
ExportROIAlgorithm |
class |
ExportTableAlgorithm |
class |
ExportTableAsXLSXAlgorithm |
class |
ImagePlusFromGUI
Imports
ImagePlusData from the GUI |
class |
ImagePlusToGUI
Imports
ImagePlusData from the GUI |
class |
ResultsTableFromGUI
Imports
ImagePlusData from the GUI |
class |
ResultsTableToGUI
Imports
ImagePlusData from the GUI |
class |
ROIFromGUI
Imports
ImagePlusData from the GUI |
class |
ROIToGUI
Imports
ImagePlusData from the GUI |
class |
RunImageJExporterAlgorithm |
class |
RunImageJImporterAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
AnnotateWithOverlapMeasureLabelsAlgorithm |
class |
CropLabelsAlgorithm |
class |
DilateLabelsAlgorithm |
class |
ExpandLabelsAlgorithm |
class |
ExtractLabelStatisticsAlgorithm |
class |
GetLabelBoundariesAlgorithm |
class |
KeepLargestLabelAlgorithm |
class |
LabelsToRGBAlgorithm |
class |
LabelsToROIAlgorithm |
class |
MergeLabelsAlgorithm |
class |
OverlapMeasureLabelsAlgorithm |
class |
RemapLabelsAlgorithm |
class |
ReplaceLabelsAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
FilterLabelsByExpression2DAlgorithm |
class |
FilterLabelsByExpression3DAlgorithm |
class |
FilterLabelsByIdAlgorithm |
class |
FilterLabelsByMaskAlgorithm |
class |
FilterLabelsByOverlapAlgorithm |
class |
FilterLabelsByStatisticsAlgorithm
Wrapper around
RoiManager |
class |
RemoveBorderLabelsAlgorithm |
class |
RemoveLargestLabelAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
ApplyLUTAlgorithm |
class |
LUTInverterAlgorithm |
class |
RemoveLUTAlgorithm |
class |
SetLUTFromColorMapAlgorithm |
class |
SetLUTFromColorsAlgorithm |
class |
SetLUTFromImageAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
ApplyColorMathExpression2DExpression |
class |
ApplyMath2DAlgorithm
Wrapper around
ImageProcessor |
class |
ApplyMathExpression2DAlgorithm
Wrapper around
ImageProcessor |
class |
ApplyTransform2DAlgorithm
Wrapper around
ImageProcessor |
class |
ApplyVectorMathExpression2DAlgorithm
Wrapper around
ImageProcessor |
class |
DivideByMaximumAlgorithm
Wrapper around
ImageProcessor |
class |
Hessian2DAlgorithm
Wrapper around
EDM |
class |
ImageCalculator2DAlgorithm
Wrapper around
ImageProcessor |
class |
ImageCalculator2DExpression |
class |
RemoveNaNFilter2DAlgorithm
Wrapper around
RankFilters |
Modifier and Type | Class and Description |
---|---|
class |
ApplyDistanceTransform2DAlgorithm
Wrapper around
EDM |
class |
ChamferDistanceMap2DAlgorithm |
class |
ChamferDistanceMap3DAlgorithm |
class |
GeodesicDistanceMap2DAlgorithm |
class |
LabelChamferDistanceMap3DAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
ExtendedMaxima2DAlgorithm |
class |
ExtendedMaxima3DAlgorithm |
class |
ExtendedMinima2DAlgorithm |
class |
ExtendedMinima3DAlgorithm |
class |
ImposeMaxima2DAlgorithm |
class |
ImposeMaxima3DAlgorithm |
class |
LocalImageCalculator2DExpression |
class |
LocalMaximumFilter2DAlgorithm
Wrapper around
RankFilters |
class |
LocalMaximumFilter3DAlgorithm
Wrapper around
RankFilters |
class |
LocalMinimumFilter2DAlgorithm
Wrapper around
RankFilters |
class |
LocalMinimumFilter3DAlgorithm
Wrapper around
RankFilters |
class |
LocalVarianceFilter2DAlgorithm
Wrapper around
RankFilters |
class |
LocalVarianceFilter3DAlgorithm
Wrapper around
RankFilters |
class |
RegionalMaxima2DAlgorithm |
class |
RegionalMaxima3DAlgorithm |
class |
RegionalMinima2DAlgorithm |
class |
RegionalMinima3DAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
FindHoles2DAlgorithm |
class |
GrayscaleAttributeFiltering2DAlgorithm |
class |
GrayscaleAttributeFiltering3DAlgorithm |
class |
MorphologicalReconstruction2DAlgorithm |
class |
MorphologicalReconstruction3DAlgorithm |
class |
Morphology2DAlgorithm
Wrapper around
ImageProcessor |
class |
Morphology3DAlgorithm
Wrapper around
ImageProcessor |
class |
MorphologyFillHoles2DAlgorithm
Wrapper around
ImageProcessor |
class |
MorphologyOutline2DAlgorithm
Wrapper around
ImageProcessor |
class |
MorphologySkeletonize2DAlgorithm
Wrapper around
ImageProcessor |
class |
MorphologySkeletonize3DAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
AddNoise2DAlgorithm
Wrapper around
ImageProcessor |
class |
AddSaltAndPepperNoise2DAlgorithm
Wrapper around
ImageProcessor |
class |
DespeckleFilter2DAlgorithm
Wrapper around
RankFilters |
class |
RemoveOutliersFilter2DAlgorithm
Wrapper around
RankFilters |
Modifier and Type | Class and Description |
---|---|
class |
MSEBlockFlowAlgorithm
Adapted from
MSEBlockFlow , as the methods there are all protected/private |
class |
MSEGaussianFlowAlgorithm
Adapted from
MSEGaussianFlow , as the methods there are all protected/private |
class |
PMCCBlockFlowAlgorithm
Adapted from
PMCCBlockFlow , as the methods there are all protected/private |
Modifier and Type | Class and Description |
---|---|
class |
ExtractOverlayAlgorithm |
class |
RemoveOverlayAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
DrawScaleBarRoiAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
RoiStatisticsAlgorithm
Wrapper around
RoiManager |
Modifier and Type | Class and Description |
---|---|
class |
ClassicWatershedSegmentationAlgorithm |
class |
RidgeDetector2DAlgorithm |
class |
SeededWatershedSegmentationAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
LaplacianSharpen2DAlgorithm
Wrapper around
ImageProcessor |
Modifier and Type | Class and Description |
---|---|
class |
HistogramGenerator
Algorithm that generates
ResultsTableData as histogram |
Modifier and Type | Class and Description |
---|---|
class |
AutoThreshold2DAlgorithm
Thresholding node that thresholds via an auto threshold
|
class |
CustomAutoThreshold2D16UAlgorithm
Thresholding node that thresholds via an auto threshold
|
class |
CustomAutoThreshold2D32FAlgorithm
Thresholding node that thresholds via an auto threshold
|
class |
CustomAutoThreshold2D8UAlgorithm
Thresholding node that thresholds via an auto threshold
|
class |
ManualThreshold16U2DAlgorithm
Wrapper around
ImageProcessor |
class |
ManualThreshold32F2DAlgorithm
Wrapper around
ImageProcessor |
class |
ManualThreshold8U2DAlgorithm
Wrapper around
ImageProcessor |
class |
PercentileThreshold8U2DAlgorithm
Wrapper around
ImageProcessor |
class |
ThresholdByAnnotation2DAlgorithm
Wrapper around
ImageProcessor |
Modifier and Type | Class and Description |
---|---|
class |
ColorThresholdExpression2D |
class |
ManualHSBThreshold2DAlgorithm |
class |
ManualLABThreshold2DAlgorithm |
class |
ManualRGBThreshold2DAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
BernsenLocalAutoThreshold2DAlgorithm
Segmenter node that thresholds via an auto threshold
Based on code from
Auto_Local_Threshold |
class |
ContrastLocalAutoThreshold2DAlgorithm
Segmenter node that thresholds via an auto threshold
Based on code from
Auto_Local_Threshold |
class |
LocalAutoThreshold2DAlgorithm
Segmenter node that thresholds via an auto threshold
Based on code from
Auto_Local_Threshold |
class |
NiblackLocalAutoThreshold2DAlgorithm
Segmenter node that thresholds via an auto threshold
Based on code from
Auto_Local_Threshold |
class |
PhansalkarLocalAutoThreshold2DAlgorithm
Segmenter node that thresholds via an auto threshold
Based on code from
Auto_Local_Threshold |
class |
SauvolaLocalAutoThreshold2DAlgorithm
Segmenter node that thresholds via an auto threshold
Based on code from
Auto_Local_Threshold |
Modifier and Type | Class and Description |
---|---|
class |
AddBorder2DAlgorithm |
class |
TransformCrop2DAlgorithm
Wrapper around
ImageProcessor |
class |
TransformEqualCanvasSize2DAlgorithm |
class |
TransformEqualizeDimensionsAlgorithm |
class |
TransformExpandCanvas2DAlgorithm |
class |
TransformFlip2DAlgorithm
Wrapper around
ImageProcessor |
class |
TransformRotate2DAlgorithm
Wrapper around
ImageProcessor |
class |
TransformRotateFree2DAlgorithm
Wrapper around
ImageProcessor |
class |
TransformScale2DAlgorithm
Wrapper around
ImageProcessor |
class |
TransformScale3DAlgorithm
Wrapper around
ImageProcessor |
class |
TransformSetHyperstackDimensionsAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
ApplyDisplayContrastAlgorithm |
class |
BioFormatsExporter |
class |
DisplayRangeCalibrationAlgorithm |
Modifier and Type | Class and Description |
---|---|
class |
BioFormatsImporter
BioFormats importer wrapper
|
class |
ImagePlusFromFile
Loads an image data from a file via IJ.openFile()
|
class |
ImportLUTAsRGBFromFile |
class |
ResultsTableFromFile
Imports
ResultsTableData from a file |
class |
ROIDataFromFile
Loads ROI data from a file via IJ.openFile()
|
Modifier and Type | Class and Description |
---|---|
class |
PlotTablesAlgorithm
Deprecated.
Instead, the new dynamically generated plotting should be utilized
|
Modifier and Type | Class and Description |
---|---|
class |
GenerateColumnAlgorithm
Algorithm that adds or replaces a column by a generated value
|
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