Basic
Here you can find a list of tutorials that explain the basic features of JIPipe.
- Importing a directory of images I
- Importing a directory of images II
- Handling multi-channel images I
- Annotations III: Modifying and merging
- Compartments I: Creating and connecting
- Compartments II: Basic image segmentation
- Cache I: Generating and viewing
- Cache II: Managing and exporting
- Annotating data with measurements
- Exporting data I: Machine-readable
- Exporting data II: Human-readable
Explains how to add new nodes into a project and use them to load an image file. Afterwards, the project is saved.
Explains how to add new nodes via the algorithm finder into a project and use them to import an image file.
Explains how to add new nodes via the search bar into a project and use them to import an image file.
Explains how to add new nodes via the node list into a project and use them to import an image file.
Provides instructions on how to change the parameters of an algorithm.
Explains how to use filesystem nodes to automatically detect and load all images in a directory.
Explains how to use filesystem nodes to automatically detect and load all images in a hierarchy of directories.
Explains the process of splitting channels, RGB conversion, channel coloring, and adding comments with image information.
Explains how to add comments with additional information into a pipeline
Explains the processes of annotating with image properties, and filtering based on annotations
Explains further detail about filtering by annotations, including adding and editing slots, and implementing branching processing pathways
Explains how to modify the set of annotations
Explains how to segment pipelines into compartments and transfer data between them
Explains how to apply basic image segmentation on a compartmentalized pipeline
Explains the particle finder, functions for measuring particles, handling of result tables, and simple data plotting
Illustrates how to cache node results to the memory and how to browse through the generated data
Explains how to manage the cache and export cached data into the standard JIPipe format.
Explains how to read and modify physical image dimensions. Additionally, this tutorial explains how to apply look-up tables
Explains the basics of ROI processing in JIPipe.
Illustrates how to use some table processing capabilities included in JIPipe
Explains how to annotate data with measurements for the usage in more advanced pipelines with filters and adaptive pipelines
Explains how to export data into a machine-readable formats
Explains how to export data into a human-readable formats