Manual installation

JIPipe is available as standalone ImageJ plugin in *.jar format that you can install into an existing installation of ImageJ.

  1. Download the JIPipe JAR files
  2. Download ImageJ if you have no ImageJ installation, then open the ImageJ plugin folder
    • Windows/Linux: Open the Fiji.app directory and navigate into the plugins folder
    • macOS: Right-click the Fiji icon on the desktop and click Show package contents. Navigate into the plugins folder.
  3. Open the *.zip file you downloaded and extract its contents into the plugins folder.
  4. Start ImageJ. You can find the JIPipe GUI inside the plugin menu (Plugins > JIPipe > JIPipe GUI)
  5. If you use JIPipe the first time, please follow our guide on the first start of JIPipe after the installation is done
  • Windows/Linux: If you want a desktop shortcut (Windows) or an entry in your application menu (Linux), open JIPipe and run Tools > Create launchers

All JIPipe versions

In the following list you can find all JIPipe versions, including older releases.

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